Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019556.t1 | XP_013444892.1 | 95 | 280 | 14 | 0 | 1 | 280 | 1 | 280 | 2.00E-151 | 545 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019556.t1 | Q6DJI8 | 40.7 | 273 | 130 | 6 | 31 | 279 | 43 | 307 | 1.9e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019556.t1 | I3S8I0 | 95.0 | 280 | 14 | 0 | 1 | 280 | 1 | 280 | 1.4e-151 | 545.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene019556 | MS.gene64519 | PPI |
| MS.gene019556 | MS.gene060216 | PPI |
| MS.gene024645 | MS.gene019556 | PPI |
| MS.gene001541 | MS.gene019556 | PPI |
| MS.gene019556 | MS.gene22748 | PPI |
| MS.gene019556 | MS.gene024390 | PPI |
| MS.gene019556 | MS.gene22746 | PPI |
| MS.gene025858 | MS.gene019556 | PPI |
| MS.gene06001 | MS.gene019556 | PPI |
| MS.gene21636 | MS.gene019556 | PPI |
| MS.gene019556 | MS.gene050695 | PPI |
| MS.gene019556 | MS.gene039110 | PPI |
| MS.gene019556 | MS.gene048861 | PPI |
| MS.gene019556 | MS.gene89721 | PPI |
| MS.gene018560 | MS.gene019556 | PPI |
| MS.gene019556 | MS.gene55732 | PPI |
| MS.gene019556 | MS.gene63721 | PPI |
| MS.gene09852 | MS.gene019556 | PPI |
| MS.gene072769 | MS.gene019556 | PPI |
| MS.gene019556 | MS.gene019322 | PPI |
| MS.gene063366 | MS.gene019556 | PPI |
| MS.gene019556 | MS.gene061898 | PPI |
| MS.gene066163 | MS.gene019556 | PPI |
| MS.gene040581 | MS.gene019556 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019556.t1 | MTR_8g031560 | 95.000 | 280 | 14 | 0 | 1 | 280 | 1 | 280 | 0.0 | 550 |
| MS.gene019556.t1 | MTR_8g107310 | 75.601 | 291 | 58 | 3 | 2 | 280 | 3 | 292 | 3.33e-151 | 424 |
| MS.gene019556.t1 | MTR_5g017130 | 39.568 | 139 | 72 | 4 | 147 | 280 | 45 | 176 | 9.70e-20 | 84.7 |
| MS.gene019556.t1 | MTR_1g054675 | 48.438 | 64 | 33 | 0 | 199 | 262 | 43 | 106 | 1.98e-11 | 62.8 |
| MS.gene019556.t1 | MTR_1g080390 | 36.842 | 76 | 48 | 0 | 203 | 278 | 286 | 361 | 2.61e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene019556.t1 | AT3G11400 | 68.056 | 288 | 73 | 4 | 9 | 280 | 10 | 294 | 4.97e-140 | 396 |
| MS.gene019556.t1 | AT3G11400 | 62.540 | 315 | 72 | 5 | 9 | 280 | 10 | 321 | 7.10e-136 | 387 |
| MS.gene019556.t1 | AT5G06000 | 58.621 | 290 | 96 | 6 | 5 | 279 | 6 | 286 | 3.09e-115 | 334 |
| MS.gene019556.t1 | AT4G34110 | 39.048 | 105 | 55 | 3 | 175 | 279 | 195 | 290 | 6.56e-12 | 65.9 |
| MS.gene019556.t1 | AT3G14100 | 40.000 | 90 | 51 | 1 | 194 | 280 | 136 | 225 | 1.25e-11 | 64.7 |
| MS.gene019556.t1 | AT1G49760 | 49.254 | 67 | 33 | 1 | 201 | 267 | 226 | 291 | 4.23e-11 | 63.5 |
| MS.gene019556.t1 | AT1G49760 | 49.254 | 67 | 33 | 1 | 201 | 267 | 226 | 291 | 4.23e-11 | 63.5 |
| MS.gene019556.t1 | AT5G64200 | 35.556 | 90 | 55 | 1 | 186 | 275 | 6 | 92 | 4.52e-11 | 62.8 |
| MS.gene019556.t1 | AT5G64200 | 35.556 | 90 | 55 | 1 | 186 | 275 | 6 | 92 | 4.52e-11 | 62.8 |
| MS.gene019556.t1 | AT1G54080 | 40.000 | 90 | 51 | 1 | 194 | 280 | 140 | 229 | 6.04e-11 | 62.8 |
| MS.gene019556.t1 | AT2G23350 | 41.935 | 93 | 49 | 2 | 175 | 267 | 205 | 292 | 8.16e-11 | 62.8 |
Find 80 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTAGGTTTAGGTTGTTCT+TGG | 0.273600 | 8.1:+70593992 | None:intergenic |
| CGACGTGAATGGTCGAAATT+TGG | 0.300840 | 8.1:-70595647 | MS.gene019556:CDS |
| TTACCGCCGCGTCAGGTAAT+TGG | 0.306765 | 8.1:-70595800 | MS.gene019556:CDS |
| GTTGAAGCGGGTGCTGCTGC+TGG | 0.324319 | 8.1:+70594331 | None:intergenic |
| ATTTGATGAAGATAATAATA+AGG | 0.324713 | 8.1:-70595738 | MS.gene019556:CDS |
| GAGGCTACGGTGGGGAGAAT+TGG | 0.333279 | 8.1:-70595858 | MS.gene019556:CDS |
| CTTGAACGTCCTAAGCCTAT+TGG | 0.333918 | 8.1:-70595563 | MS.gene019556:intron |
| GGGTGGCCCATTCAACCTTC+AGG | 0.339818 | 8.1:+70594014 | None:intergenic |
| TTTAGGTTTAGGTTGTTCTT+GGG | 0.346207 | 8.1:+70593993 | None:intergenic |
| GGTTGTGTGAGATTCCTATT+TGG | 0.350671 | 8.1:+70594379 | None:intergenic |
| CCGAAAAGCTCATGCAAATC+AGG | 0.363425 | 8.1:+70594184 | None:intergenic |
| GCTTTGTCAACTTTGTCAAC+AGG | 0.382048 | 8.1:-70594093 | MS.gene019556:CDS |
| GGACCCAGATGCTGTTCTTA+TGG | 0.393050 | 8.1:-70594449 | MS.gene019556:CDS |
| GGACTGCAAGGTGTCCAAAT+AGG | 0.396640 | 8.1:-70594393 | MS.gene019556:CDS |
| AGTTACTCGCACAAGGAAAC+TGG | 0.405837 | 8.1:-70595702 | MS.gene019556:CDS |
| ACAATCCCTGAGCAAAAGCC+TGG | 0.406374 | 8.1:-70594472 | MS.gene019556:CDS |
| CCTCGTGTCCTCCGAGAGAT+TGG | 0.415176 | 8.1:+70594210 | None:intergenic |
| TTATGGTATGCAGGACTTGT+GGG | 0.433263 | 8.1:-70594432 | MS.gene019556:CDS |
| TTTCCTCTTACCGCCGCGTC+AGG | 0.433608 | 8.1:-70595807 | MS.gene019556:CDS |
| TTACCTGACGCGGCGGTAAG+AGG | 0.438929 | 8.1:+70595804 | None:intergenic |
| ATCTCATCCTGAAGGTTGAA+TGG | 0.441177 | 8.1:-70594021 | MS.gene019556:CDS |
| AGGAGGTACATATGCATTGT+TGG | 0.465772 | 8.1:+70594309 | None:intergenic |
| GCTTGAGAGCTGGTGCAGAT+AGG | 0.483886 | 8.1:-70594285 | MS.gene019556:CDS |
| CATACCATAAGAACAGCATC+TGG | 0.484455 | 8.1:+70594445 | None:intergenic |
| ATGCAGGACTTGTGGGAAGA+AGG | 0.493800 | 8.1:-70594425 | MS.gene019556:CDS |
| ATGCTGTTCTTATGGTATGC+AGG | 0.495611 | 8.1:-70594441 | MS.gene019556:CDS |
| TCTCATCCTGAAGGTTGAAT+GGG | 0.496659 | 8.1:-70594020 | MS.gene019556:CDS |
| AAATAGGAATCTCACACAAC+CGG | 0.499063 | 8.1:-70594377 | MS.gene019556:CDS |
| AGAGAGATACCAATAGGCTT+AGG | 0.499302 | 8.1:+70595554 | None:intergenic |
| TGCAGGACTTGTGGGAAGAA+GGG | 0.515384 | 8.1:-70594424 | MS.gene019556:CDS |
| ATTAACAAACTGAATGGCTA+TGG | 0.523336 | 8.1:-70594052 | MS.gene019556:CDS |
| GGTTTAGGTTGTTCTTGGGG+TGG | 0.525184 | 8.1:+70593997 | None:intergenic |
| GGAATGATGAGAACTCTGTC+CGG | 0.525892 | 8.1:-70594237 | MS.gene019556:CDS |
| GAAGCGGGTGCTGCTGCTGG+AGG | 0.526888 | 8.1:+70594334 | None:intergenic |
| CCTCCGAGAGATTGGTTACC+CGG | 0.528125 | 8.1:+70594218 | None:intergenic |
| CTTTGTCAACTTTGTCAACA+GGG | 0.528739 | 8.1:-70594092 | MS.gene019556:CDS |
| CTTATGGTATGCAGGACTTG+TGG | 0.530657 | 8.1:-70594433 | MS.gene019556:CDS |
| GTAATTGGACCTGACGAAAA+CGG | 0.532144 | 8.1:-70595785 | MS.gene019556:CDS |
| TTAGGTTTAGGTTGTTCTTG+GGG | 0.533486 | 8.1:+70593994 | None:intergenic |
| AGAACAGCATCTGGGTCCCC+AGG | 0.535062 | 8.1:+70594454 | None:intergenic |
| GAATGATGAGAACTCTGTCC+GGG | 0.539563 | 8.1:-70594236 | MS.gene019556:CDS |
| TATGCATTGTTGGTTGAAGC+GGG | 0.539669 | 8.1:+70594319 | None:intergenic |
| TTGGACACCTTGCAGTCCAA+TGG | 0.539847 | 8.1:+70594398 | None:intergenic |
| TCTGCACCAGCTCTCAAGCT+AGG | 0.542595 | 8.1:+70594289 | None:intergenic |
| AGAGCTGGTGCAGATAGGAC+TGG | 0.551252 | 8.1:-70594280 | MS.gene019556:CDS |
| CCCACCGTAGCCTCGTCGGT+TGG | 0.559262 | 8.1:+70595867 | None:intergenic |
| AGAGCTATTAACAAACTGAA+TGG | 0.561521 | 8.1:-70594058 | MS.gene019556:CDS |
| TGAACCAACCGACGAGGCTA+CGG | 0.562135 | 8.1:-70595871 | MS.gene019556:CDS |
| TCTCCCCACCGTAGCCTCGT+CGG | 0.562637 | 8.1:+70595863 | None:intergenic |
| GTGGGAAGAAGGGTGACCAT+TGG | 0.569169 | 8.1:-70594414 | MS.gene019556:CDS |
| CAATCCCTGAGCAAAAGCCT+GGG | 0.573990 | 8.1:-70594471 | MS.gene019556:CDS |
| ATATGCATTGTTGGTTGAAG+CGG | 0.574935 | 8.1:+70594318 | None:intergenic |
| GCGCTGTTGAACGACGTGAA+TGG | 0.578162 | 8.1:-70595658 | MS.gene019556:CDS |
| CCAATCTCTCGGAGGACACG+AGG | 0.579645 | 8.1:-70594210 | MS.gene019556:CDS |
| GAGGGTCAGACATGAGGCGC+AGG | 0.579803 | 8.1:-70594258 | MS.gene019556:CDS |
| GAGCAGAGTATATGTTGCTA+TGG | 0.586610 | 8.1:-70594146 | MS.gene019556:CDS |
| ACCAACCGACGAGGCTACGG+TGG | 0.590480 | 8.1:-70595868 | MS.gene019556:CDS |
| GTACCTCCTAGCTTGAGAGC+TGG | 0.608499 | 8.1:-70594295 | MS.gene019556:CDS |
| TTATCAACAAAATCGTCAGC+CGG | 0.609258 | 8.1:+70594358 | None:intergenic |
| AGGGTGACCATTGGACTGCA+AGG | 0.613965 | 8.1:-70594405 | MS.gene019556:CDS |
| TGTCCGGGTAACCAATCTCT+CGG | 0.618499 | 8.1:-70594221 | MS.gene019556:CDS |
| CTACGACAATCTCATCCTGA+AGG | 0.621391 | 8.1:-70594029 | MS.gene019556:CDS |
| GGACTGGAGGGTCAGACATG+AGG | 0.624231 | 8.1:-70594264 | MS.gene019556:CDS |
| GCTGGTGCAGATAGGACTGG+AGG | 0.628048 | 8.1:-70594277 | MS.gene019556:CDS |
| CCAACCGACGAGGCTACGGT+GGG | 0.629416 | 8.1:-70595867 | MS.gene019556:CDS |
| CAATCTCTCGGAGGACACGA+GGG | 0.632835 | 8.1:-70594209 | MS.gene019556:CDS |
| TCACAACAGTTACTCGCACA+AGG | 0.638520 | 8.1:-70595709 | MS.gene019556:CDS |
| CTGGTGCAGATAGGACTGGA+GGG | 0.640033 | 8.1:-70594276 | MS.gene019556:CDS |
| AAAACACTGGTACGAGTAGG+GGG | 0.643442 | 8.1:-70594120 | MS.gene019556:CDS |
| ATACCATAAGAACAGCATCT+GGG | 0.648596 | 8.1:+70594446 | None:intergenic |
| GATGCTGTGAATGAAGATGT+TGG | 0.655135 | 8.1:-70595623 | MS.gene019556:CDS |
| GCACCAGCTCTCAAGCTAGG+AGG | 0.655438 | 8.1:+70594292 | None:intergenic |
| CTCTGATGAACCAACCGACG+AGG | 0.659481 | 8.1:-70595877 | MS.gene019556:CDS |
| TGAATGAAGATGTTGGTAGT+CGG | 0.664689 | 8.1:-70595616 | MS.gene019556:CDS |
| TCAGGTCCAATTACCTGACG+CGG | 0.672266 | 8.1:+70595794 | None:intergenic |
| CAACCGACGAGGCTACGGTG+GGG | 0.695139 | 8.1:-70595866 | MS.gene019556:CDS |
| AATCCCTGAGCAAAAGCCTG+GGG | 0.721772 | 8.1:-70594470 | MS.gene019556:CDS |
| CCGGGTAACCAATCTCTCGG+AGG | 0.724245 | 8.1:-70594218 | MS.gene019556:CDS |
| GGTCCAATTACCTGACGCGG+CGG | 0.738944 | 8.1:+70595797 | None:intergenic |
| GAATTGGAAGAAGACGACGA+CGG | 0.773946 | 8.1:-70595842 | MS.gene019556:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTGATGAAGATAATAATA+AGG | - | chr8.1:70594146-70594165 | MS.gene019556:CDS | 15.0% |
| !! | ACAAAAAAAATTATGGTCAA+GGG | - | chr8.1:70594728-70594747 | MS.gene019556:intron | 20.0% |
| !! | CAATTCATAGTTTCAATATA+AGG | + | chr8.1:70594930-70594949 | None:intergenic | 20.0% |
| !! | TTTCTTGATTAAATGAACTA+GGG | - | chr8.1:70595040-70595059 | MS.gene019556:intron | 20.0% |
| !!! | GGTTTTGACAAAAAAAATTA+TGG | - | chr8.1:70594721-70594740 | MS.gene019556:intron | 20.0% |
| !!! | TTTTCTTGATTAAATGAACT+AGG | - | chr8.1:70595039-70595058 | MS.gene019556:intron | 20.0% |
| ! | GACAAAAAAAATTATGGTCA+AGG | - | chr8.1:70594727-70594746 | MS.gene019556:intron | 25.0% |
| ! | TATATCTTGCAATTGTTAAC+AGG | - | chr8.1:70595385-70595404 | MS.gene019556:intron | 25.0% |
| ! | TTGCATTTCAATTTGTACTT+GGG | - | chr8.1:70595103-70595122 | MS.gene019556:intron | 25.0% |
| ! | TTTGCATTTCAATTTGTACT+TGG | - | chr8.1:70595102-70595121 | MS.gene019556:intron | 25.0% |
| !!! | CTCGTTTTAGTTTTAGTTTT+TGG | - | chr8.1:70594403-70594422 | MS.gene019556:CDS | 25.0% |
| !!! | TTTACGTTTTTGTTGATTCT+GGG | - | chr8.1:70594431-70594450 | MS.gene019556:CDS | 25.0% |
| !!! | TTTTACGTTTTTGTTGATTC+TGG | - | chr8.1:70594430-70594449 | MS.gene019556:CDS | 25.0% |
| AACCCTATGAAGCAATAAAA+CGG | + | chr8.1:70594705-70594724 | None:intergenic | 30.0% | |
| AGACACGAGCAATAATTTAA+TGG | + | chr8.1:70594658-70594677 | None:intergenic | 30.0% | |
| AGAGCTATTAACAAACTGAA+TGG | - | chr8.1:70595826-70595845 | MS.gene019556:CDS | 30.0% | |
| ATTAACAAACTGAATGGCTA+TGG | - | chr8.1:70595832-70595851 | MS.gene019556:CDS | 30.0% | |
| CAGTGTAAAATTGTGTGATT+TGG | - | chr8.1:70594601-70594620 | MS.gene019556:intron | 30.0% | |
| CTTGAATAACAAATCATGAG+TGG | - | chr8.1:70595208-70595227 | MS.gene019556:intron | 30.0% | |
| ! | AATTTCATACACTGGAGTTT+TGG | - | chr8.1:70594985-70595004 | MS.gene019556:intron | 30.0% |
| ! | ACCTAAACTAAGTTCTGATT+TGG | + | chr8.1:70595285-70595304 | None:intergenic | 30.0% |
| !! | ATCCGTTTTATTGCTTCATA+GGG | - | chr8.1:70594700-70594719 | MS.gene019556:intron | 30.0% |
| !! | CACTCATGATTTGTTATTCA+AGG | + | chr8.1:70595210-70595229 | None:intergenic | 30.0% |
| AAATAGGAATCTCACACAAC+CGG | - | chr8.1:70595507-70595526 | MS.gene019556:intron | 35.0% | |
| ACGCTCAAGAATGATTGTAT+TGG | - | chr8.1:70595074-70595093 | MS.gene019556:intron | 35.0% | |
| ATAAAAACACTGGTACGAGT+AGG | - | chr8.1:70595761-70595780 | MS.gene019556:CDS | 35.0% | |
| ATACCATAAGAACAGCATCT+GGG | + | chr8.1:70595441-70595460 | None:intergenic | 35.0% | |
| CTTTGTCAACTTTGTCAACA+GGG | - | chr8.1:70595792-70595811 | MS.gene019556:CDS | 35.0% | |
| GCCAAATCAGAACTTAGTTT+AGG | - | chr8.1:70595281-70595300 | MS.gene019556:intron | 35.0% | |
| GTTGCTATGGATAAAAACAC+TGG | - | chr8.1:70595751-70595770 | MS.gene019556:CDS | 35.0% | |
| GTTGCTTCTACTATGTTTCA+TGG | - | chr8.1:70594893-70594912 | MS.gene019556:intron | 35.0% | |
| TAAAAACACTGGTACGAGTA+GGG | - | chr8.1:70595762-70595781 | MS.gene019556:CDS | 35.0% | |
| TCGCATTTGCAAAATCATAG+TGG | - | chr8.1:70594820-70594839 | MS.gene019556:intron | 35.0% | |
| TTATCAACAAAATCGTCAGC+CGG | + | chr8.1:70595529-70595548 | None:intergenic | 35.0% | |
| TTCAATAGACGAGGTTGAAA+GGG | + | chr8.1:70595323-70595342 | None:intergenic | 35.0% | |
| ! | ATATGCATTGTTGGTTGAAG+CGG | + | chr8.1:70595569-70595588 | None:intergenic | 35.0% |
| !! | GATCCGTTTTATTGCTTCAT+AGG | - | chr8.1:70594699-70594718 | MS.gene019556:intron | 35.0% |
| !! | TGAATGAAGATGTTGGTAGT+CGG | - | chr8.1:70594268-70594287 | MS.gene019556:CDS | 35.0% |
| AAAAACACTGGTACGAGTAG+GGG | - | chr8.1:70595763-70595782 | MS.gene019556:CDS | 40.0% | |
| AGAGAGAGAGAGATACCAAT+AGG | + | chr8.1:70594339-70594358 | None:intergenic | 40.0% | |
| AGAGAGATACCAATAGGCTT+AGG | + | chr8.1:70594333-70594352 | None:intergenic | 40.0% | |
| ATCTCATCCTGAAGGTTGAA+TGG | - | chr8.1:70595863-70595882 | MS.gene019556:CDS | 40.0% | |
| ATGCTGTTCTTATGGTATGC+AGG | - | chr8.1:70595443-70595462 | MS.gene019556:intron | 40.0% | |
| CAGTGCTCAATTTCATACAC+TGG | - | chr8.1:70594977-70594996 | MS.gene019556:intron | 40.0% | |
| CATACCATAAGAACAGCATC+TGG | + | chr8.1:70595442-70595461 | None:intergenic | 40.0% | |
| CCAGGATTTCTCACTTGTAT+AGG | - | chr8.1:70595134-70595153 | MS.gene019556:intron | 40.0% | |
| CCTATACAAGTGAGAAATCC+TGG | + | chr8.1:70595137-70595156 | None:intergenic | 40.0% | |
| CTTCAATAGACGAGGTTGAA+AGG | + | chr8.1:70595324-70595343 | None:intergenic | 40.0% | |
| CTTTCAACCTCGTCTATTGA+AGG | - | chr8.1:70595322-70595341 | MS.gene019556:intron | 40.0% | |
| GAGCAGAGTATATGTTGCTA+TGG | - | chr8.1:70595738-70595757 | MS.gene019556:CDS | 40.0% | |
| GATGCTGTGAATGAAGATGT+TGG | - | chr8.1:70594261-70594280 | MS.gene019556:CDS | 40.0% | |
| GCAACGATTTAGTGCATGTT+CGG | + | chr8.1:70594878-70594897 | None:intergenic | 40.0% | |
| GCTTTGTCAACTTTGTCAAC+AGG | - | chr8.1:70595791-70595810 | MS.gene019556:CDS | 40.0% | |
| GGTTGTGTGAGATTCCTATT+TGG | + | chr8.1:70595508-70595527 | None:intergenic | 40.0% | |
| GTAATTGGACCTGACGAAAA+CGG | - | chr8.1:70594099-70594118 | MS.gene019556:CDS | 40.0% | |
| TCAAGGGTTTAAGTGCATGT+TGG | - | chr8.1:70594744-70594763 | MS.gene019556:intron | 40.0% | |
| TCTCATCCTGAAGGTTGAAT+GGG | - | chr8.1:70595864-70595883 | MS.gene019556:CDS | 40.0% | |
| TGTACTTGGGATGAATTACC+AGG | - | chr8.1:70595116-70595135 | MS.gene019556:intron | 40.0% | |
| TTAAGTGCATGTTGGCATCA+TGG | - | chr8.1:70594752-70594771 | MS.gene019556:intron | 40.0% | |
| TTATGGTATGCAGGACTTGT+GGG | - | chr8.1:70595452-70595471 | MS.gene019556:intron | 40.0% | |
| ! | AGGAGGTACATATGCATTGT+TGG | + | chr8.1:70595578-70595597 | None:intergenic | 40.0% |
| ! | TATGCATTGTTGGTTGAAGC+GGG | + | chr8.1:70595568-70595587 | None:intergenic | 40.0% |
| ! | TTCTTGATTCCGTTTTCGTC+AGG | + | chr8.1:70594111-70594130 | None:intergenic | 40.0% |
| !! | CCTGATTTGCATGAGCTTTT+CGG | - | chr8.1:70595700-70595719 | MS.gene019556:CDS | 40.0% |
| AAAACACTGGTACGAGTAGG+GGG | - | chr8.1:70595764-70595783 | MS.gene019556:CDS | 45.0% | |
| AGTTACTCGCACAAGGAAAC+TGG | - | chr8.1:70594182-70594201 | MS.gene019556:CDS | 45.0% | |
| CAATCCTCCTTCAATAGACG+AGG | + | chr8.1:70595332-70595351 | None:intergenic | 45.0% | |
| CCGAAAAGCTCATGCAAATC+AGG | + | chr8.1:70595703-70595722 | None:intergenic | 45.0% | |
| CGACGTGAATGGTCGAAATT+TGG | - | chr8.1:70594237-70594256 | MS.gene019556:CDS | 45.0% | |
| CTACGACAATCTCATCCTGA+AGG | - | chr8.1:70595855-70595874 | MS.gene019556:CDS | 45.0% | |
| CTCGTCTATTGAAGGAGGAT+TGG | - | chr8.1:70595330-70595349 | MS.gene019556:intron | 45.0% | |
| CTTATGGTATGCAGGACTTG+TGG | - | chr8.1:70595451-70595470 | MS.gene019556:intron | 45.0% | |
| CTTGAACGTCCTAAGCCTAT+TGG | - | chr8.1:70594321-70594340 | MS.gene019556:CDS | 45.0% | |
| GAATGATGAGAACTCTGTCC+GGG | - | chr8.1:70595648-70595667 | MS.gene019556:CDS | 45.0% | |
| GAATTGGAAGAAGACGACGA+CGG | - | chr8.1:70594042-70594061 | MS.gene019556:CDS | 45.0% | |
| GGAATGATGAGAACTCTGTC+CGG | - | chr8.1:70595647-70595666 | MS.gene019556:CDS | 45.0% | |
| TCAACCTCGTCTATTGAAGG+AGG | - | chr8.1:70595325-70595344 | MS.gene019556:intron | 45.0% | |
| TCACAACAGTTACTCGCACA+AGG | - | chr8.1:70594175-70594194 | MS.gene019556:CDS | 45.0% | |
| ! | CATGAGCTTTTCGGCACTTT+TGG | - | chr8.1:70595709-70595728 | MS.gene019556:CDS | 45.0% |
| AATCCCTGAGCAAAAGCCTG+GGG | - | chr8.1:70595414-70595433 | MS.gene019556:intron | 50.0% | |
| ACAATCCCTGAGCAAAAGCC+TGG | - | chr8.1:70595412-70595431 | MS.gene019556:intron | 50.0% | |
| AGTGCATGTTGGCATCATGG+TGG | - | chr8.1:70594755-70594774 | MS.gene019556:intron | 50.0% | |
| ATGCAGGACTTGTGGGAAGA+AGG | - | chr8.1:70595459-70595478 | MS.gene019556:intron | 50.0% | |
| CAATCCCTGAGCAAAAGCCT+GGG | - | chr8.1:70595413-70595432 | MS.gene019556:intron | 50.0% | |
| GGACCCAGATGCTGTTCTTA+TGG | - | chr8.1:70595435-70595454 | MS.gene019556:intron | 50.0% | |
| GTGCATGTTGGCATCATGGT+GGG | - | chr8.1:70594756-70594775 | MS.gene019556:intron | 50.0% | |
| GTTGCCAGACAGAATCACAG+TGG | - | chr8.1:70594778-70594797 | MS.gene019556:intron | 50.0% | |
| TCAGGTCCAATTACCTGACG+CGG | + | chr8.1:70594093-70594112 | None:intergenic | 50.0% | |
| TGCAGGACTTGTGGGAAGAA+GGG | - | chr8.1:70595460-70595479 | MS.gene019556:intron | 50.0% | |
| TGTCCGGGTAACCAATCTCT+CGG | - | chr8.1:70595663-70595682 | MS.gene019556:CDS | 50.0% | |
| TTGGACACCTTGCAGTCCAA+TGG | + | chr8.1:70595489-70595508 | None:intergenic | 50.0% | |
| ! | AGGCTTTTGCTCAGGGATTG+TGG | + | chr8.1:70595413-70595432 | None:intergenic | 50.0% |
| ! | GGACTGCAAGGTGTCCAAAT+AGG | - | chr8.1:70595491-70595510 | MS.gene019556:intron | 50.0% |
| ACTGGTACGAGTAGGGGGTT+TGG | - | chr8.1:70595769-70595788 | MS.gene019556:CDS | 55.0% | |
| AGAGCTGGTGCAGATAGGAC+TGG | - | chr8.1:70595604-70595623 | MS.gene019556:CDS | 55.0% | |
| AGGGTGACCATTGGACTGCA+AGG | - | chr8.1:70595479-70595498 | MS.gene019556:intron | 55.0% | |
| CAATCTCTCGGAGGACACGA+GGG | - | chr8.1:70595675-70595694 | MS.gene019556:CDS | 55.0% | |
| CGAGCCACTGTGATTCTGTC+TGG | + | chr8.1:70594785-70594804 | None:intergenic | 55.0% | |
| CTCTGATGAACCAACCGACG+AGG | - | chr8.1:70594007-70594026 | MS.gene019556:CDS | 55.0% | |
| CTGGTGCAGATAGGACTGGA+GGG | - | chr8.1:70595608-70595627 | MS.gene019556:CDS | 55.0% | |
| GCGCTGTTGAACGACGTGAA+TGG | - | chr8.1:70594226-70594245 | MS.gene019556:CDS | 55.0% | |
| GCTTGAGAGCTGGTGCAGAT+AGG | - | chr8.1:70595599-70595618 | MS.gene019556:CDS | 55.0% | |
| GTACCTCCTAGCTTGAGAGC+TGG | - | chr8.1:70595589-70595608 | MS.gene019556:CDS | 55.0% | |
| GTGGGAAGAAGGGTGACCAT+TGG | - | chr8.1:70595470-70595489 | MS.gene019556:intron | 55.0% | |
| TCTGCACCAGCTCTCAAGCT+AGG | + | chr8.1:70595598-70595617 | None:intergenic | 55.0% | |
| TGAACCAACCGACGAGGCTA+CGG | - | chr8.1:70594013-70594032 | MS.gene019556:CDS | 55.0% | |
| TTACCGCCGCGTCAGGTAAT+TGG | - | chr8.1:70594084-70594103 | MS.gene019556:CDS | 55.0% | |
| ! | CCTCCGAGAGATTGGTTACC+CGG | + | chr8.1:70595669-70595688 | None:intergenic | 55.0% |
| AGAACAGCATCTGGGTCCCC+AGG | + | chr8.1:70595433-70595452 | None:intergenic | 60.0% | |
| CCAATCTCTCGGAGGACACG+AGG | - | chr8.1:70595674-70595693 | MS.gene019556:CDS | 60.0% | |
| CCGGGTAACCAATCTCTCGG+AGG | - | chr8.1:70595666-70595685 | MS.gene019556:CDS | 60.0% | |
| CCTCGTGTCCTCCGAGAGAT+TGG | + | chr8.1:70595677-70595696 | None:intergenic | 60.0% | |
| GAGGCTACGGTGGGGAGAAT+TGG | - | chr8.1:70594026-70594045 | MS.gene019556:CDS | 60.0% | |
| GCACCAGCTCTCAAGCTAGG+AGG | + | chr8.1:70595595-70595614 | None:intergenic | 60.0% | |
| GCTGGTGCAGATAGGACTGG+AGG | - | chr8.1:70595607-70595626 | MS.gene019556:CDS | 60.0% | |
| GGACTGGAGGGTCAGACATG+AGG | - | chr8.1:70595620-70595639 | MS.gene019556:CDS | 60.0% | |
| GGGTGGCCCATTCAACCTTC+AGG | + | chr8.1:70595873-70595892 | None:intergenic | 60.0% | |
| GGTCCAATTACCTGACGCGG+CGG | + | chr8.1:70594090-70594109 | None:intergenic | 60.0% | |
| TTACCTGACGCGGCGGTAAG+AGG | + | chr8.1:70594083-70594102 | None:intergenic | 60.0% | |
| TTTCCTCTTACCGCCGCGTC+AGG | - | chr8.1:70594077-70594096 | MS.gene019556:CDS | 60.0% | |
| ! | GGTCCCCAGGCTTTTGCTCA+GGG | + | chr8.1:70595420-70595439 | None:intergenic | 60.0% |
| ACCAACCGACGAGGCTACGG+TGG | - | chr8.1:70594016-70594035 | MS.gene019556:CDS | 65.0% | |
| CAACCGACGAGGCTACGGTG+GGG | - | chr8.1:70594018-70594037 | MS.gene019556:CDS | 65.0% | |
| CCAACCGACGAGGCTACGGT+GGG | - | chr8.1:70594017-70594036 | MS.gene019556:CDS | 65.0% | |
| GAGGGTCAGACATGAGGCGC+AGG | - | chr8.1:70595626-70595645 | MS.gene019556:CDS | 65.0% | |
| TCTCCCCACCGTAGCCTCGT+CGG | + | chr8.1:70594024-70594043 | None:intergenic | 65.0% | |
| ! | GGGTCCCCAGGCTTTTGCTC+AGG | + | chr8.1:70595421-70595440 | None:intergenic | 65.0% |
| !! | GTTGAAGCGGGTGCTGCTGC+TGG | + | chr8.1:70595556-70595575 | None:intergenic | 65.0% |
| CCCACCGTAGCCTCGTCGGT+TGG | + | chr8.1:70594020-70594039 | None:intergenic | 70.0% | |
| !! | GAAGCGGGTGCTGCTGCTGG+AGG | + | chr8.1:70595553-70595572 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 70594000 | 70595906 | 70594000 | ID=MS.gene019556 |
| chr8.1 | mRNA | 70594000 | 70595906 | 70594000 | ID=MS.gene019556.t1;Parent=MS.gene019556 |
| chr8.1 | exon | 70595564 | 70595906 | 70595564 | ID=MS.gene019556.t1.exon1;Parent=MS.gene019556.t1 |
| chr8.1 | CDS | 70595564 | 70595906 | 70595564 | ID=cds.MS.gene019556.t1;Parent=MS.gene019556.t1 |
| chr8.1 | exon | 70594000 | 70594499 | 70594000 | ID=MS.gene019556.t1.exon2;Parent=MS.gene019556.t1 |
| chr8.1 | CDS | 70594000 | 70594499 | 70594000 | ID=cds.MS.gene019556.t1;Parent=MS.gene019556.t1 |
| Gene Sequence |
| Protein sequence |
