Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056722.t1 | XP_013444892.1 | 95.4 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 1.50E-151 | 545.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056722.t1 | Q6DJI8 | 41.0 | 273 | 129 | 6 | 31 | 279 | 43 | 307 | 1.9e-46 | 187.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056722.t1 | I3S8I0 | 95.4 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 1.1e-151 | 545.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001541 | MS.gene056722 | PPI |
| MS.gene55732 | MS.gene056722 | PPI |
| MS.gene89721 | MS.gene056722 | PPI |
| MS.gene025858 | MS.gene056722 | PPI |
| MS.gene21636 | MS.gene056722 | PPI |
| MS.gene056722 | MS.gene64519 | PPI |
| MS.gene018560 | MS.gene056722 | PPI |
| MS.gene019322 | MS.gene056722 | PPI |
| MS.gene039110 | MS.gene056722 | PPI |
| MS.gene22748 | MS.gene056722 | PPI |
| MS.gene09852 | MS.gene056722 | PPI |
| MS.gene050695 | MS.gene056722 | PPI |
| MS.gene072769 | MS.gene056722 | PPI |
| MS.gene056722 | MS.gene024390 | PPI |
| MS.gene056722 | MS.gene22746 | PPI |
| MS.gene061898 | MS.gene056722 | PPI |
| MS.gene063366 | MS.gene056722 | PPI |
| MS.gene024645 | MS.gene056722 | PPI |
| MS.gene060216 | MS.gene056722 | PPI |
| MS.gene066163 | MS.gene056722 | PPI |
| MS.gene040581 | MS.gene056722 | PPI |
| MS.gene048861 | MS.gene056722 | PPI |
| MS.gene056722 | MS.gene63721 | PPI |
| MS.gene06001 | MS.gene056722 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056722.t1 | MTR_8g031560 | 95.357 | 280 | 13 | 0 | 1 | 280 | 1 | 280 | 0.0 | 550 |
| MS.gene056722.t1 | MTR_8g107310 | 75.601 | 291 | 58 | 3 | 2 | 280 | 3 | 292 | 4.29e-151 | 424 |
| MS.gene056722.t1 | MTR_5g017130 | 39.568 | 139 | 72 | 4 | 147 | 280 | 45 | 176 | 1.02e-19 | 84.3 |
| MS.gene056722.t1 | MTR_1g054675 | 48.438 | 64 | 33 | 0 | 199 | 262 | 43 | 106 | 2.09e-11 | 62.8 |
| MS.gene056722.t1 | MTR_1g080390 | 36.842 | 76 | 48 | 0 | 203 | 278 | 286 | 361 | 2.63e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene056722.t1 | AT3G11400 | 68.056 | 288 | 73 | 4 | 9 | 280 | 10 | 294 | 6.53e-140 | 396 |
| MS.gene056722.t1 | AT3G11400 | 62.540 | 315 | 72 | 5 | 9 | 280 | 10 | 321 | 7.66e-136 | 387 |
| MS.gene056722.t1 | AT5G06000 | 58.276 | 290 | 97 | 6 | 5 | 279 | 6 | 286 | 6.02e-115 | 333 |
| MS.gene056722.t1 | AT4G34110 | 39.048 | 105 | 55 | 3 | 175 | 279 | 195 | 290 | 6.68e-12 | 65.9 |
| MS.gene056722.t1 | AT3G14100 | 40.000 | 90 | 51 | 1 | 194 | 280 | 136 | 225 | 1.24e-11 | 65.1 |
| MS.gene056722.t1 | AT1G49760 | 49.254 | 67 | 33 | 1 | 201 | 267 | 226 | 291 | 3.90e-11 | 63.5 |
| MS.gene056722.t1 | AT1G49760 | 49.254 | 67 | 33 | 1 | 201 | 267 | 226 | 291 | 3.90e-11 | 63.5 |
| MS.gene056722.t1 | AT5G64200 | 35.556 | 90 | 55 | 1 | 186 | 275 | 6 | 92 | 4.15e-11 | 62.8 |
| MS.gene056722.t1 | AT5G64200 | 35.556 | 90 | 55 | 1 | 186 | 275 | 6 | 92 | 4.15e-11 | 62.8 |
| MS.gene056722.t1 | AT1G54080 | 40.000 | 90 | 51 | 1 | 194 | 280 | 140 | 229 | 6.27e-11 | 62.8 |
| MS.gene056722.t1 | AT2G23350 | 41.935 | 93 | 49 | 2 | 175 | 267 | 205 | 292 | 8.62e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCACCGCGTCAGGTAAT+TGG | 0.264924 | 8.4:-65262472 | MS.gene056722:CDS |
| CGACGTGAATGGTCGAAATT+TGG | 0.300840 | 8.4:-65262319 | MS.gene056722:CDS |
| GTTTAGGTTTAGGTTGTTCT+TGG | 0.304313 | 8.4:+65260613 | None:intergenic |
| GTTGAAGCGGGTGCTGCTGC+TGG | 0.324319 | 8.4:+65260952 | None:intergenic |
| ATTTGATGAAGATAATAATA+AGG | 0.324713 | 8.4:-65262410 | MS.gene056722:CDS |
| GGGTGGCCCATTCAACCTTC+AGG | 0.339818 | 8.4:+65260635 | None:intergenic |
| TTTAGGTTTAGGTTGTTCTT+GGG | 0.346207 | 8.4:+65260614 | None:intergenic |
| CTTGAACGTCCTAAGCCTAT+TGG | 0.349362 | 8.4:-65262235 | MS.gene056722:intron |
| GGTTGTGTGAGATTCCTATT+TGG | 0.350671 | 8.4:+65261000 | None:intergenic |
| CCGAAAAGCTCATGCAAATC+AGG | 0.363425 | 8.4:+65260805 | None:intergenic |
| TTACCTGACGCGGTGGTAAC+AGG | 0.379284 | 8.4:+65262476 | None:intergenic |
| GCTTTGTCAACTTTGTCAAC+AGG | 0.382048 | 8.4:-65260714 | MS.gene056722:CDS |
| GAGGCTACGTTGGGGAGAAT+TGG | 0.384767 | 8.4:-65262530 | MS.gene056722:CDS |
| TTTCCTGTTACCACCGCGTC+AGG | 0.388708 | 8.4:-65262479 | MS.gene056722:CDS |
| GGACCCAGATGCTGTTCTTA+TGG | 0.393050 | 8.4:-65261070 | MS.gene056722:CDS |
| GGACTGCAAGGTGTCCAAAT+AGG | 0.396640 | 8.4:-65261014 | MS.gene056722:CDS |
| AGTTACTCGCACAAGGAAAC+TGG | 0.405837 | 8.4:-65262374 | MS.gene056722:CDS |
| ACAATCCCTGAGCAAAAGCC+TGG | 0.406374 | 8.4:-65261093 | MS.gene056722:CDS |
| CCTCGTGTCCTCCGAGAGAT+TGG | 0.415176 | 8.4:+65260831 | None:intergenic |
| TTATGGTATGCAGGACTTGT+GGG | 0.433263 | 8.4:-65261053 | MS.gene056722:CDS |
| ATCTCATCCTGAAGGTTGAA+TGG | 0.441177 | 8.4:-65260642 | MS.gene056722:CDS |
| CCAACCAACGAGGCTACGTT+GGG | 0.453755 | 8.4:-65262539 | MS.gene056722:CDS |
| AGGAGGTACATATGCATTGT+TGG | 0.465772 | 8.4:+65260930 | None:intergenic |
| GCTTGAGAGCTGGTGCAGAT+AGG | 0.483886 | 8.4:-65260906 | MS.gene056722:CDS |
| CATACCATAAGAACAGCATC+TGG | 0.484455 | 8.4:+65261066 | None:intergenic |
| ATGCAGGACTTGTGGGAAGA+AGG | 0.493800 | 8.4:-65261046 | MS.gene056722:CDS |
| ATGCTGTTCTTATGGTATGC+AGG | 0.495611 | 8.4:-65261062 | MS.gene056722:CDS |
| TCTCATCCTGAAGGTTGAAT+GGG | 0.496659 | 8.4:-65260641 | MS.gene056722:CDS |
| AAATAGGAATCTCACACAAC+CGG | 0.499063 | 8.4:-65260998 | MS.gene056722:CDS |
| AGAGAGATACCAATAGGCTT+AGG | 0.499302 | 8.4:+65262226 | None:intergenic |
| CCCAACGTAGCCTCGTTGGT+TGG | 0.509625 | 8.4:+65262539 | None:intergenic |
| TGCAGGACTTGTGGGAAGAA+GGG | 0.515384 | 8.4:-65261045 | MS.gene056722:CDS |
| ATTAACAAACTGAATGGCTA+TGG | 0.523336 | 8.4:-65260673 | MS.gene056722:CDS |
| GGTTTAGGTTGTTCTTGGGG+TGG | 0.525184 | 8.4:+65260618 | None:intergenic |
| GGAATGATGAGAACTCTGTC+CGG | 0.525892 | 8.4:-65260858 | MS.gene056722:CDS |
| GAAGCGGGTGCTGCTGCTGG+AGG | 0.526888 | 8.4:+65260955 | None:intergenic |
| CCTCCGAGAGATTGGTTACC+CGG | 0.528125 | 8.4:+65260839 | None:intergenic |
| CTTTGTCAACTTTGTCAACA+GGG | 0.528739 | 8.4:-65260713 | MS.gene056722:CDS |
| CTTATGGTATGCAGGACTTG+TGG | 0.530657 | 8.4:-65261054 | MS.gene056722:CDS |
| GTAATTGGACCTGACGAAAA+CGG | 0.532144 | 8.4:-65262457 | MS.gene056722:CDS |
| TTAGGTTTAGGTTGTTCTTG+GGG | 0.533486 | 8.4:+65260615 | None:intergenic |
| AGAACAGCATCTGGGTCCCC+AGG | 0.535062 | 8.4:+65261075 | None:intergenic |
| GAATGATGAGAACTCTGTCC+GGG | 0.539563 | 8.4:-65260857 | MS.gene056722:CDS |
| TATGCATTGTTGGTTGAAGC+GGG | 0.539669 | 8.4:+65260940 | None:intergenic |
| TTGGACACCTTGCAGTCCAA+TGG | 0.539847 | 8.4:+65261019 | None:intergenic |
| TCTGCACCAGCTCTCAAGCT+AGG | 0.542595 | 8.4:+65260910 | None:intergenic |
| AGAGCTGGTGCAGATAGGAC+TGG | 0.551252 | 8.4:-65260901 | MS.gene056722:CDS |
| TCTCCCCAACGTAGCCTCGT+TGG | 0.552501 | 8.4:+65262535 | None:intergenic |
| AGAGCTATTAACAAACTGAA+TGG | 0.561521 | 8.4:-65260679 | MS.gene056722:CDS |
| GTGGGAAGAAGGGTGACCAT+TGG | 0.569169 | 8.4:-65261035 | MS.gene056722:CDS |
| CAATCCCTGAGCAAAAGCCT+GGG | 0.573990 | 8.4:-65261092 | MS.gene056722:CDS |
| ATATGCATTGTTGGTTGAAG+CGG | 0.574935 | 8.4:+65260939 | None:intergenic |
| GCGCTGTTGAACGACGTGAA+TGG | 0.578162 | 8.4:-65262330 | MS.gene056722:CDS |
| ACCAACCAACGAGGCTACGT+TGG | 0.578791 | 8.4:-65262540 | MS.gene056722:CDS |
| CCAATCTCTCGGAGGACACG+AGG | 0.579645 | 8.4:-65260831 | MS.gene056722:CDS |
| GAGGGTCAGACATGAGGCGC+AGG | 0.579803 | 8.4:-65260879 | MS.gene056722:CDS |
| GAGCAGAGTATATGTTGCTA+TGG | 0.586610 | 8.4:-65260767 | MS.gene056722:CDS |
| GTACCTCCTAGCTTGAGAGC+TGG | 0.608499 | 8.4:-65260916 | MS.gene056722:CDS |
| TTATCAACAAAATCGTCAGC+CGG | 0.609258 | 8.4:+65260979 | None:intergenic |
| AGGGTGACCATTGGACTGCA+AGG | 0.613965 | 8.4:-65261026 | MS.gene056722:CDS |
| TGTCCGGGTAACCAATCTCT+CGG | 0.618499 | 8.4:-65260842 | MS.gene056722:CDS |
| CTACGACAATCTCATCCTGA+AGG | 0.621391 | 8.4:-65260650 | MS.gene056722:CDS |
| GGACTGGAGGGTCAGACATG+AGG | 0.624231 | 8.4:-65260885 | MS.gene056722:CDS |
| AAAACACTGGCACGAGTAGG+GGG | 0.626917 | 8.4:-65260741 | MS.gene056722:CDS |
| GCTGGTGCAGATAGGACTGG+AGG | 0.628048 | 8.4:-65260898 | MS.gene056722:CDS |
| CAATCTCTCGGAGGACACGA+GGG | 0.632835 | 8.4:-65260830 | MS.gene056722:CDS |
| TCACAACAGTTACTCGCACA+AGG | 0.638520 | 8.4:-65262381 | MS.gene056722:CDS |
| CTGGTGCAGATAGGACTGGA+GGG | 0.640033 | 8.4:-65260897 | MS.gene056722:CDS |
| ATACCATAAGAACAGCATCT+GGG | 0.648596 | 8.4:+65261067 | None:intergenic |
| GATGCTGTGAATGAAGATGT+TGG | 0.655135 | 8.4:-65262295 | MS.gene056722:CDS |
| GCACCAGCTCTCAAGCTAGG+AGG | 0.655438 | 8.4:+65260913 | None:intergenic |
| TGAATGAAGATGTTGGTAGT+CGG | 0.664689 | 8.4:-65262288 | MS.gene056722:CDS |
| GGTCCAATTACCTGACGCGG+TGG | 0.688497 | 8.4:+65262469 | None:intergenic |
| TCAGGTCCAATTACCTGACG+CGG | 0.698146 | 8.4:+65262466 | None:intergenic |
| CTCTGATGAACCAACCAACG+AGG | 0.703156 | 8.4:-65262549 | MS.gene056722:CDS |
| CAACCAACGAGGCTACGTTG+GGG | 0.704528 | 8.4:-65262538 | MS.gene056722:CDS |
| AATCCCTGAGCAAAAGCCTG+GGG | 0.721772 | 8.4:-65261091 | MS.gene056722:CDS |
| CCGGGTAACCAATCTCTCGG+AGG | 0.724245 | 8.4:-65260839 | MS.gene056722:CDS |
| GAATTGGAAGAAGACGACGA+CGG | 0.773946 | 8.4:-65262514 | MS.gene056722:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATAAAAAATTATGGTTAA+GGG | - | chr8.4:65261360-65261379 | MS.gene056722:intron | 15.0% |
| !! | ATTTGATGAAGATAATAATA+AGG | - | chr8.4:65260767-65260786 | MS.gene056722:CDS | 15.0% |
| !!! | GTTTTTGTAAATGAATTTAT+TGG | - | chr8.4:65261802-65261821 | MS.gene056722:intron | 15.0% |
| !! | GACATAAAAAATTATGGTTA+AGG | - | chr8.4:65261359-65261378 | MS.gene056722:intron | 20.0% |
| !! | GTAAATGAATTTATTGGATT+AGG | - | chr8.4:65261808-65261827 | MS.gene056722:intron | 20.0% |
| !!! | GGTTTTGACATAAAAAATTA+TGG | - | chr8.4:65261353-65261372 | MS.gene056722:intron | 20.0% |
| !!! | TTTGTTGATTATATGAACTA+GGG | - | chr8.4:65261671-65261690 | MS.gene056722:intron | 20.0% |
| !!! | TTTTGTTGATTATATGAACT+AGG | - | chr8.4:65261670-65261689 | MS.gene056722:intron | 20.0% |
| ! | ACTAACACGCAATAATTTAA+TGG | + | chr8.4:65261273-65261292 | None:intergenic | 25.0% |
| ! | TATATCTTGCAATTGTTAAC+AGG | - | chr8.4:65262057-65262076 | MS.gene056722:intron | 25.0% |
| ! | TCGAATTTACAAAATCATAG+TGG | - | chr8.4:65261448-65261467 | MS.gene056722:intron | 25.0% |
| !!! | ACCTAAACTAAGTTTTGATT+TGG | + | chr8.4:65261957-65261976 | None:intergenic | 25.0% |
| !!! | TTTACGTTTTTGTTGATTCT+GGG | - | chr8.4:65261044-65261063 | MS.gene056722:CDS | 25.0% |
| !!! | TTTTACGTTTTTGTTGATTC+TGG | - | chr8.4:65261043-65261062 | MS.gene056722:CDS | 25.0% |
| AGAGCTATTAACAAACTGAA+TGG | - | chr8.4:65262498-65262517 | MS.gene056722:CDS | 30.0% | |
| ATGAAACATAGTAGAAGCAA+CGG | + | chr8.4:65261522-65261541 | None:intergenic | 30.0% | |
| ATTAACAAACTGAATGGCTA+TGG | - | chr8.4:65262504-65262523 | MS.gene056722:CDS | 30.0% | |
| CAGTGTAAAATAGTGTGATT+TGG | - | chr8.4:65261216-65261235 | MS.gene056722:intron | 30.0% | |
| CTTGAATAACAAATCATGAG+TGG | - | chr8.4:65261880-65261899 | MS.gene056722:intron | 30.0% | |
| GCCAAATCAAAACTTAGTTT+AGG | - | chr8.4:65261953-65261972 | MS.gene056722:intron | 30.0% | |
| GTTAGTGTCAATATCATGAT+CGG | - | chr8.4:65261302-65261321 | MS.gene056722:intron | 30.0% | |
| TTAAGTGCATGTTGTTATCA+CGG | - | chr8.4:65261384-65261403 | MS.gene056722:intron | 30.0% | |
| ! | ACGCTCAATATTGATTGTAT+TGG | - | chr8.4:65261705-65261724 | MS.gene056722:intron | 30.0% |
| ! | ATCACACTATTTTACACTGT+CGG | + | chr8.4:65261215-65261234 | None:intergenic | 30.0% |
| !! | CACTCATGATTTGTTATTCA+AGG | + | chr8.4:65261882-65261901 | None:intergenic | 30.0% |
| !! | TTGCATTTCAAGTTGTACTT+GGG | - | chr8.4:65261734-65261753 | MS.gene056722:intron | 30.0% |
| !! | TTTGCATTTCAAGTTGTACT+TGG | - | chr8.4:65261733-65261752 | MS.gene056722:intron | 30.0% |
| AAATAGGAATCTCACACAAC+CGG | - | chr8.4:65262179-65262198 | MS.gene056722:intron | 35.0% | |
| AACCCTACGAAGCAATAAAA+CGG | + | chr8.4:65261337-65261356 | None:intergenic | 35.0% | |
| ATACCATAAGAACAGCATCT+GGG | + | chr8.4:65262113-65262132 | None:intergenic | 35.0% | |
| CTTTGTCAACTTTGTCAACA+GGG | - | chr8.4:65262464-65262483 | MS.gene056722:CDS | 35.0% | |
| GATTTCTCTCTCACTTGTAT+AGG | - | chr8.4:65261769-65261788 | MS.gene056722:intron | 35.0% | |
| GTTGCTATGGATAAAAACAC+TGG | - | chr8.4:65262423-65262442 | MS.gene056722:CDS | 35.0% | |
| GTTGCTTCTACTATGTTTCA+TGG | - | chr8.4:65261521-65261540 | MS.gene056722:intron | 35.0% | |
| TTATCAACAAAATCGTCAGC+CGG | + | chr8.4:65262201-65262220 | None:intergenic | 35.0% | |
| TTCAATAGACGAGGTTGAAA+GGG | + | chr8.4:65261995-65262014 | None:intergenic | 35.0% | |
| ! | AATTTCATACGCTGGAGTTT+TGG | - | chr8.4:65261616-65261635 | MS.gene056722:intron | 35.0% |
| ! | ATATGCATTGTTGGTTGAAG+CGG | + | chr8.4:65262241-65262260 | None:intergenic | 35.0% |
| !! | TGAATGAAGATGTTGGTAGT+CGG | - | chr8.4:65260889-65260908 | MS.gene056722:CDS | 35.0% |
| !!! | CTCTCTCTCGTTTTAGTTTT+TGG | - | chr8.4:65261016-65261035 | MS.gene056722:CDS | 35.0% |
| AGAGAGAGAGAGATACCAAT+AGG | + | chr8.4:65260960-65260979 | None:intergenic | 40.0% | |
| AGAGAGATACCAATAGGCTT+AGG | + | chr8.4:65260954-65260973 | None:intergenic | 40.0% | |
| ATAAAAACACTGGCACGAGT+AGG | - | chr8.4:65262433-65262452 | MS.gene056722:CDS | 40.0% | |
| ATCTCATCCTGAAGGTTGAA+TGG | - | chr8.4:65262535-65262554 | MS.gene056722:CDS | 40.0% | |
| ATGCTGTTCTTATGGTATGC+AGG | - | chr8.4:65262115-65262134 | MS.gene056722:intron | 40.0% | |
| CATACCATAAGAACAGCATC+TGG | + | chr8.4:65262114-65262133 | None:intergenic | 40.0% | |
| CTTCAATAGACGAGGTTGAA+AGG | + | chr8.4:65261996-65262015 | None:intergenic | 40.0% | |
| CTTTCAACCTCGTCTATTGA+AGG | - | chr8.4:65261994-65262013 | MS.gene056722:intron | 40.0% | |
| GAGCAGAGTATATGTTGCTA+TGG | - | chr8.4:65262410-65262429 | MS.gene056722:CDS | 40.0% | |
| GATGCTGTGAATGAAGATGT+TGG | - | chr8.4:65260882-65260901 | MS.gene056722:CDS | 40.0% | |
| GCTTTGTCAACTTTGTCAAC+AGG | - | chr8.4:65262463-65262482 | MS.gene056722:CDS | 40.0% | |
| GGTTGTGTGAGATTCCTATT+TGG | + | chr8.4:65262180-65262199 | None:intergenic | 40.0% | |
| GTAATTGGACCTGACGAAAA+CGG | - | chr8.4:65260720-65260739 | MS.gene056722:CDS | 40.0% | |
| TAAAAACACTGGCACGAGTA+GGG | - | chr8.4:65262434-65262453 | MS.gene056722:CDS | 40.0% | |
| TACAAGTGAGAGAGAAATCC+TGG | + | chr8.4:65261768-65261787 | None:intergenic | 40.0% | |
| TCTCATCCTGAAGGTTGAAT+GGG | - | chr8.4:65262536-65262555 | MS.gene056722:CDS | 40.0% | |
| TGTACTTGGGATGAATTACC+AGG | - | chr8.4:65261747-65261766 | MS.gene056722:intron | 40.0% | |
| TTATGGTATGCAGGACTTGT+GGG | - | chr8.4:65262124-65262143 | MS.gene056722:intron | 40.0% | |
| ! | AGGAGGTACATATGCATTGT+TGG | + | chr8.4:65262250-65262269 | None:intergenic | 40.0% |
| ! | TATGCATTGTTGGTTGAAGC+GGG | + | chr8.4:65262240-65262259 | None:intergenic | 40.0% |
| ! | TTCTTGATTCCGTTTTCGTC+AGG | + | chr8.4:65260732-65260751 | None:intergenic | 40.0% |
| !! | CCTGATTTGCATGAGCTTTT+CGG | - | chr8.4:65262372-65262391 | MS.gene056722:CDS | 40.0% |
| !! | GTCCGTTTTATTGCTTCGTA+GGG | - | chr8.4:65261332-65261351 | MS.gene056722:intron | 40.0% |
| !! | TGTCCGTTTTATTGCTTCGT+AGG | - | chr8.4:65261331-65261350 | MS.gene056722:intron | 40.0% |
| AAAAACACTGGCACGAGTAG+GGG | - | chr8.4:65262435-65262454 | MS.gene056722:CDS | 45.0% | |
| AGTGCATGTTGTTATCACGG+TGG | - | chr8.4:65261387-65261406 | MS.gene056722:intron | 45.0% | |
| AGTTACTCGCACAAGGAAAC+TGG | - | chr8.4:65260803-65260822 | MS.gene056722:CDS | 45.0% | |
| CAATCCTCCTTCAATAGACG+AGG | + | chr8.4:65262004-65262023 | None:intergenic | 45.0% | |
| CCGAAAAGCTCATGCAAATC+AGG | + | chr8.4:65262375-65262394 | None:intergenic | 45.0% | |
| CGACGTGAATGGTCGAAATT+TGG | - | chr8.4:65260858-65260877 | MS.gene056722:CDS | 45.0% | |
| CTACGACAATCTCATCCTGA+AGG | - | chr8.4:65262527-65262546 | MS.gene056722:CDS | 45.0% | |
| CTCGTCTATTGAAGGAGGAT+TGG | - | chr8.4:65262002-65262021 | MS.gene056722:intron | 45.0% | |
| CTTATGGTATGCAGGACTTG+TGG | - | chr8.4:65262123-65262142 | MS.gene056722:intron | 45.0% | |
| CTTGAACGTCCTAAGCCTAT+TGG | - | chr8.4:65260942-65260961 | MS.gene056722:CDS | 45.0% | |
| GAATGATGAGAACTCTGTCC+GGG | - | chr8.4:65262320-65262339 | MS.gene056722:CDS | 45.0% | |
| GAATTGGAAGAAGACGACGA+CGG | - | chr8.4:65260663-65260682 | MS.gene056722:CDS | 45.0% | |
| GCAACGGTTTAGTGCATGTT+TGG | + | chr8.4:65261506-65261525 | None:intergenic | 45.0% | |
| GCTTGCTCAATTTCATACGC+TGG | - | chr8.4:65261608-65261627 | MS.gene056722:intron | 45.0% | |
| GGAATGATGAGAACTCTGTC+CGG | - | chr8.4:65262319-65262338 | MS.gene056722:CDS | 45.0% | |
| GTGCATGTTGTTATCACGGT+GGG | - | chr8.4:65261388-65261407 | MS.gene056722:intron | 45.0% | |
| TCAACCTCGTCTATTGAAGG+AGG | - | chr8.4:65261997-65262016 | MS.gene056722:intron | 45.0% | |
| TCACAACAGTTACTCGCACA+AGG | - | chr8.4:65260796-65260815 | MS.gene056722:CDS | 45.0% | |
| ! | CATGAGCTTTTCGGCACTTT+TGG | - | chr8.4:65262381-65262400 | MS.gene056722:CDS | 45.0% |
| AAAACACTGGCACGAGTAGG+GGG | - | chr8.4:65262436-65262455 | MS.gene056722:CDS | 50.0% | |
| AATCCCTGAGCAAAAGCCTG+GGG | - | chr8.4:65262086-65262105 | MS.gene056722:intron | 50.0% | |
| ACAATCCCTGAGCAAAAGCC+TGG | - | chr8.4:65262084-65262103 | MS.gene056722:intron | 50.0% | |
| ATGCAGGACTTGTGGGAAGA+AGG | - | chr8.4:65262131-65262150 | MS.gene056722:intron | 50.0% | |
| CAATCCCTGAGCAAAAGCCT+GGG | - | chr8.4:65262085-65262104 | MS.gene056722:intron | 50.0% | |
| CTCTGATGAACCAACCAACG+AGG | - | chr8.4:65260628-65260647 | MS.gene056722:CDS | 50.0% | |
| GGACCCAGATGCTGTTCTTA+TGG | - | chr8.4:65262107-65262126 | MS.gene056722:intron | 50.0% | |
| TCAGGTCCAATTACCTGACG+CGG | + | chr8.4:65260714-65260733 | None:intergenic | 50.0% | |
| TGCAGGACTTGTGGGAAGAA+GGG | - | chr8.4:65262132-65262151 | MS.gene056722:intron | 50.0% | |
| TGTCCGGGTAACCAATCTCT+CGG | - | chr8.4:65262335-65262354 | MS.gene056722:CDS | 50.0% | |
| TTACCACCGCGTCAGGTAAT+TGG | - | chr8.4:65260705-65260724 | MS.gene056722:CDS | 50.0% | |
| TTGGACACCTTGCAGTCCAA+TGG | + | chr8.4:65262161-65262180 | None:intergenic | 50.0% | |
| ! | AGGCTTTTGCTCAGGGATTG+TGG | + | chr8.4:65262085-65262104 | None:intergenic | 50.0% |
| ! | GGACTGCAAGGTGTCCAAAT+AGG | - | chr8.4:65262163-65262182 | MS.gene056722:intron | 50.0% |
| ACCAACCAACGAGGCTACGT+TGG | - | chr8.4:65260637-65260656 | MS.gene056722:CDS | 55.0% | |
| AGAGCTGGTGCAGATAGGAC+TGG | - | chr8.4:65262276-65262295 | MS.gene056722:CDS | 55.0% | |
| AGGGTGACCATTGGACTGCA+AGG | - | chr8.4:65262151-65262170 | MS.gene056722:intron | 55.0% | |
| CAACCAACGAGGCTACGTTG+GGG | - | chr8.4:65260639-65260658 | MS.gene056722:CDS | 55.0% | |
| CAATCTCTCGGAGGACACGA+GGG | - | chr8.4:65262347-65262366 | MS.gene056722:CDS | 55.0% | |
| CCAACCAACGAGGCTACGTT+GGG | - | chr8.4:65260638-65260657 | MS.gene056722:CDS | 55.0% | |
| CTGGTGCAGATAGGACTGGA+GGG | - | chr8.4:65262280-65262299 | MS.gene056722:CDS | 55.0% | |
| GAGGCTACGTTGGGGAGAAT+TGG | - | chr8.4:65260647-65260666 | MS.gene056722:CDS | 55.0% | |
| GCGCTGTTGAACGACGTGAA+TGG | - | chr8.4:65260847-65260866 | MS.gene056722:CDS | 55.0% | |
| GCTTGAGAGCTGGTGCAGAT+AGG | - | chr8.4:65262271-65262290 | MS.gene056722:CDS | 55.0% | |
| GTACCTCCTAGCTTGAGAGC+TGG | - | chr8.4:65262261-65262280 | MS.gene056722:CDS | 55.0% | |
| GTAGCGAGCCACTGTGATTC+TGG | + | chr8.4:65261417-65261436 | None:intergenic | 55.0% | |
| GTGGGAAGAAGGGTGACCAT+TGG | - | chr8.4:65262142-65262161 | MS.gene056722:intron | 55.0% | |
| TCTGCACCAGCTCTCAAGCT+AGG | + | chr8.4:65262270-65262289 | None:intergenic | 55.0% | |
| TTACCTGACGCGGTGGTAAC+AGG | + | chr8.4:65260704-65260723 | None:intergenic | 55.0% | |
| TTTCCTGTTACCACCGCGTC+AGG | - | chr8.4:65260698-65260717 | MS.gene056722:CDS | 55.0% | |
| ! | CCTCCGAGAGATTGGTTACC+CGG | + | chr8.4:65262341-65262360 | None:intergenic | 55.0% |
| ! | GTGGGTTGCCAGAATCACAG+TGG | - | chr8.4:65261406-65261425 | MS.gene056722:intron | 55.0% |
| ACTGGCACGAGTAGGGGGTT+TGG | - | chr8.4:65262441-65262460 | MS.gene056722:CDS | 60.0% | |
| AGAACAGCATCTGGGTCCCC+AGG | + | chr8.4:65262105-65262124 | None:intergenic | 60.0% | |
| CCAATCTCTCGGAGGACACG+AGG | - | chr8.4:65262346-65262365 | MS.gene056722:CDS | 60.0% | |
| CCCAACGTAGCCTCGTTGGT+TGG | + | chr8.4:65260641-65260660 | None:intergenic | 60.0% | |
| CCGGGTAACCAATCTCTCGG+AGG | - | chr8.4:65262338-65262357 | MS.gene056722:CDS | 60.0% | |
| CCTCGTGTCCTCCGAGAGAT+TGG | + | chr8.4:65262349-65262368 | None:intergenic | 60.0% | |
| GCACCAGCTCTCAAGCTAGG+AGG | + | chr8.4:65262267-65262286 | None:intergenic | 60.0% | |
| GCTGGTGCAGATAGGACTGG+AGG | - | chr8.4:65262279-65262298 | MS.gene056722:CDS | 60.0% | |
| GGACTGGAGGGTCAGACATG+AGG | - | chr8.4:65262292-65262311 | MS.gene056722:CDS | 60.0% | |
| GGGTGGCCCATTCAACCTTC+AGG | + | chr8.4:65262545-65262564 | None:intergenic | 60.0% | |
| GGTCCAATTACCTGACGCGG+TGG | + | chr8.4:65260711-65260730 | None:intergenic | 60.0% | |
| TCTCCCCAACGTAGCCTCGT+TGG | + | chr8.4:65260645-65260664 | None:intergenic | 60.0% | |
| ! | GGTCCCCAGGCTTTTGCTCA+GGG | + | chr8.4:65262092-65262111 | None:intergenic | 60.0% |
| GAGGGTCAGACATGAGGCGC+AGG | - | chr8.4:65262298-65262317 | MS.gene056722:CDS | 65.0% | |
| ! | GGGTCCCCAGGCTTTTGCTC+AGG | + | chr8.4:65262093-65262112 | None:intergenic | 65.0% |
| !! | GTTGAAGCGGGTGCTGCTGC+TGG | + | chr8.4:65262228-65262247 | None:intergenic | 65.0% |
| !! | GAAGCGGGTGCTGCTGCTGG+AGG | + | chr8.4:65262225-65262244 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 65260621 | 65262578 | 65260621 | ID=MS.gene056722 |
| chr8.4 | mRNA | 65260621 | 65262578 | 65260621 | ID=MS.gene056722.t1;Parent=MS.gene056722 |
| chr8.4 | exon | 65262236 | 65262578 | 65262236 | ID=MS.gene056722.t1.exon1;Parent=MS.gene056722.t1 |
| chr8.4 | CDS | 65262236 | 65262578 | 65262236 | ID=cds.MS.gene056722.t1;Parent=MS.gene056722.t1 |
| chr8.4 | exon | 65260621 | 65261120 | 65260621 | ID=MS.gene056722.t1.exon2;Parent=MS.gene056722.t1 |
| chr8.4 | CDS | 65260621 | 65261120 | 65260621 | ID=cds.MS.gene056722.t1;Parent=MS.gene056722.t1 |
| Gene Sequence |
| Protein sequence |
