Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047001.t1 | XP_003631117.1 | 99.3 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 8.10E-164 | 586.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047001.t1 | Q6DRC4 | 42.0 | 300 | 148 | 9 | 4 | 289 | 3 | 290 | 7.6e-54 | 212.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047001.t1 | G7LE61 | 99.3 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 5.8e-164 | 586.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene06001 | MS.gene047001 | PPI |
| MS.gene001541 | MS.gene047001 | PPI |
| MS.gene047001 | MS.gene072769 | PPI |
| MS.gene047001 | MS.gene019322 | PPI |
| MS.gene025858 | MS.gene047001 | PPI |
| MS.gene047001 | MS.gene061898 | PPI |
| MS.gene21636 | MS.gene047001 | PPI |
| MS.gene047001 | MS.gene64519 | PPI |
| MS.gene047001 | MS.gene060216 | PPI |
| MS.gene047001 | MS.gene024390 | PPI |
| MS.gene047001 | MS.gene063366 | PPI |
| MS.gene047001 | MS.gene22746 | PPI |
| MS.gene047001 | MS.gene024645 | PPI |
| MS.gene047001 | MS.gene09852 | PPI |
| MS.gene066163 | MS.gene047001 | PPI |
| MS.gene047001 | MS.gene050695 | PPI |
| MS.gene040581 | MS.gene047001 | PPI |
| MS.gene047001 | MS.gene22748 | PPI |
| MS.gene047001 | MS.gene039110 | PPI |
| MS.gene047001 | MS.gene048861 | PPI |
| MS.gene047001 | MS.gene89721 | PPI |
| MS.gene047001 | MS.gene018560 | PPI |
| MS.gene047001 | MS.gene55732 | PPI |
| MS.gene047001 | MS.gene63721 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047001.t1 | MTR_8g107310 | 99.315 | 292 | 2 | 0 | 1 | 292 | 1 | 292 | 0.0 | 597 |
| MS.gene047001.t1 | MTR_8g031560 | 76.289 | 291 | 56 | 3 | 3 | 292 | 2 | 280 | 3.07e-160 | 447 |
| MS.gene047001.t1 | MTR_5g017130 | 50.000 | 110 | 52 | 2 | 185 | 292 | 68 | 176 | 1.91e-26 | 102 |
| MS.gene047001.t1 | MTR_4g081510 | 38.462 | 78 | 48 | 0 | 213 | 290 | 46 | 123 | 4.86e-11 | 61.2 |
| MS.gene047001.t1 | MTR_8g022050 | 42.857 | 77 | 44 | 0 | 212 | 288 | 148 | 224 | 6.82e-11 | 62.8 |
| MS.gene047001.t1 | MTR_1g080390 | 36.842 | 76 | 48 | 0 | 215 | 290 | 286 | 361 | 7.70e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047001.t1 | AT3G11400 | 72.973 | 296 | 74 | 5 | 1 | 292 | 1 | 294 | 8.08e-156 | 436 |
| MS.gene047001.t1 | AT3G11400 | 66.873 | 323 | 74 | 5 | 1 | 292 | 1 | 321 | 8.46e-151 | 425 |
| MS.gene047001.t1 | AT5G06000 | 64.626 | 294 | 93 | 6 | 1 | 291 | 1 | 286 | 1.39e-132 | 378 |
| MS.gene047001.t1 | AT1G54080 | 41.111 | 90 | 50 | 1 | 206 | 292 | 140 | 229 | 6.76e-12 | 65.9 |
| MS.gene047001.t1 | AT3G14100 | 41.111 | 90 | 50 | 1 | 206 | 292 | 136 | 225 | 1.04e-11 | 65.5 |
| MS.gene047001.t1 | AT1G54080 | 40.426 | 94 | 49 | 2 | 206 | 292 | 140 | 233 | 2.12e-11 | 64.3 |
Find 107 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAATGCTTAGGTTGTTCT+TGG | 0.243434 | 4.3:+275245 | None:intergenic |
| CAATAAAGGTGCTGTTCTTA+TGG | 0.252283 | 4.3:-275720 | MS.gene047001:CDS |
| GCGCCGTTGAGCGCCGTTCC+TGG | 0.290623 | 4.3:-276170 | MS.gene047001:CDS |
| GTTGCAACAGATGCTGCTCC+TGG | 0.291109 | 4.3:-275602 | MS.gene047001:CDS |
| ATTCGATGATGATGGTAATA+AGG | 0.312148 | 4.3:-276250 | MS.gene047001:CDS |
| GACAGTGGGTCAGCAGTCTT+TGG | 0.317010 | 4.3:+275749 | None:intergenic |
| GACTTCAAGGTGTCCATATA+AGG | 0.326137 | 4.3:-275663 | MS.gene047001:CDS |
| CGGAAAAGCTCAAGCAAATC+AGG | 0.333826 | 4.3:+275437 | None:intergenic |
| ATCAACAAACTCAATGGATA+TGG | 0.334085 | 4.3:-275305 | MS.gene047001:CDS |
| CCAATGCTTAGGTTGTTCTT+GGG | 0.335891 | 4.3:+275246 | None:intergenic |
| GTGATAGGTCCTGATGAAAA+TGG | 0.346524 | 4.3:-276297 | MS.gene047001:CDS |
| TCACCTGACGTGGTGGTAAC+AGG | 0.357484 | 4.3:+276316 | None:intergenic |
| TTATGGTATGCAGGACTTGC+GGG | 0.371975 | 4.3:-275703 | MS.gene047001:CDS |
| GAAGCTAAGGTGGGGAGAAT+TGG | 0.373757 | 4.3:-276367 | MS.gene047001:CDS |
| GGAAGACGATGGCGAAGATC+TGG | 0.395348 | 4.3:-276343 | MS.gene047001:CDS |
| CCACTGTCTCAATTCAATAA+AGG | 0.396074 | 4.3:-275734 | MS.gene047001:CDS |
| CGTCGGTGCCCGCCTCACTA+TGG | 0.408913 | 4.3:-276118 | MS.gene047001:CDS |
| GCTTCAGCTGCCTCAGCAAA+GGG | 0.410110 | 4.3:-275578 | MS.gene047001:CDS |
| ACGCGCGTTGGCAAGTTTGC+GGG | 0.418864 | 4.3:+276203 | None:intergenic |
| TTGCAACAGATGCTGCTCCT+GGG | 0.430137 | 4.3:-275601 | MS.gene047001:CDS |
| CGCCGTTCCTGGCCTAAGTT+CGG | 0.430777 | 4.3:-276159 | MS.gene047001:CDS |
| GGCTTCAGCTGCCTCAGCAA+AGG | 0.431088 | 4.3:-275579 | MS.gene047001:CDS |
| GGAGCAGCATCTGTTGCAAC+AGG | 0.435145 | 4.3:+275605 | None:intergenic |
| ATGCAGGACTTGCGGGAAGA+AGG | 0.440149 | 4.3:-275696 | MS.gene047001:CDS |
| GACGCGCGTTGGCAAGTTTG+CGG | 0.443758 | 4.3:+276202 | None:intergenic |
| ACTGGCATGAGTAGGGGCTT+TGG | 0.446792 | 4.3:-275368 | MS.gene047001:CDS |
| GCTTTGTGAACTTTGTTAGC+AGG | 0.448198 | 4.3:-275346 | MS.gene047001:CDS |
| TCCTCTCCGCACCAGCTCTC+AGG | 0.449264 | 4.3:+275537 | None:intergenic |
| GGGTGGCCCATTCAACTCTC+AGG | 0.454110 | 4.3:+275267 | None:intergenic |
| GCTGAGGCAGCTGAAGCCCC+AGG | 0.456235 | 4.3:+275584 | None:intergenic |
| GAACGATGAGAATTCTGTTC+GGG | 0.459314 | 4.3:-275489 | MS.gene047001:CDS |
| TTTCCTGTTACCACCACGTC+AGG | 0.468496 | 4.3:-276319 | MS.gene047001:CDS |
| GGCTGTGCGAGATCCTTATA+TGG | 0.469555 | 4.3:+275650 | None:intergenic |
| AGTCTTTGGATCCTCCTTGT+TGG | 0.470984 | 4.3:+275763 | None:intergenic |
| GCTGGTGCGGAGAGGACTAC+TGG | 0.480564 | 4.3:-275530 | MS.gene047001:CDS |
| CTGATGAAAATGGAATCAAA+AGG | 0.493183 | 4.3:-276287 | MS.gene047001:CDS |
| CCTTGTGTCCTCCGAGAGGT+TGG | 0.493283 | 4.3:+275463 | None:intergenic |
| GGCGGCAATTCAGTCTGAAC+CGG | 0.495287 | 4.3:-276391 | MS.gene047001:CDS |
| TGCTTAGGTTGTTCTTGGGG+TGG | 0.495372 | 4.3:+275250 | None:intergenic |
| TCTCATCCTGAGAGTTGAAT+GGG | 0.497673 | 4.3:-275273 | MS.gene047001:CDS |
| GCGGGAAGAAGGGTGATCAT+TGG | 0.499819 | 4.3:-275685 | MS.gene047001:CDS |
| GTGCTGTTCTTATGGTATGC+AGG | 0.503047 | 4.3:-275712 | MS.gene047001:CDS |
| CTGAACCGGCGAAGCTAAGG+TGG | 0.503185 | 4.3:-276377 | MS.gene047001:CDS |
| ATCTCATCCTGAGAGTTGAA+TGG | 0.503653 | 4.3:-275274 | MS.gene047001:CDS |
| TCAAAAGACTGGCATGAGTA+GGG | 0.504440 | 4.3:-275375 | MS.gene047001:CDS |
| TTACCACCACGTCAGGTGAT+AGG | 0.508065 | 4.3:-276312 | MS.gene047001:CDS |
| TCTCCCCACCTTAGCTTCGC+CGG | 0.508727 | 4.3:+276372 | None:intergenic |
| TGCAGGACTTGCGGGAAGAA+GGG | 0.508910 | 4.3:-275695 | MS.gene047001:CDS |
| GTTGCTATTGATCAAAAGAC+TGG | 0.519323 | 4.3:-275386 | MS.gene047001:CDS |
| CAATGCTTAGGTTGTTCTTG+GGG | 0.520594 | 4.3:+275247 | None:intergenic |
| AGGGTGATCATTGGACTTCA+AGG | 0.520801 | 4.3:-275676 | MS.gene047001:CDS |
| CTCGAACGCCCCAAACCACT+TGG | 0.521196 | 4.3:-276075 | MS.gene047001:intron |
| AGGGCTATCAACAAACTCAA+TGG | 0.522389 | 4.3:-275311 | MS.gene047001:CDS |
| GAGTACAAATTCGATGATGA+TGG | 0.524262 | 4.3:-276258 | MS.gene047001:CDS |
| TCCGCACCAGCTCTCAGGCT+AGG | 0.528088 | 4.3:+275542 | None:intergenic |
| GGTTTATCAACAAAAGTCTC+AGG | 0.531499 | 4.3:+275626 | None:intergenic |
| TACTGACAGCACCAAAAGGC+CGG | 0.531711 | 4.3:+275417 | None:intergenic |
| CTTATGGTATGCAGGACTTG+CGG | 0.534636 | 4.3:-275704 | MS.gene047001:CDS |
| CTTTGTGAACTTTGTTAGCA+GGG | 0.538694 | 4.3:-275345 | MS.gene047001:CDS |
| GGAACGATGAGAATTCTGTT+CGG | 0.539699 | 4.3:-275490 | MS.gene047001:CDS |
| GCGTTCGAGAAGGATCTCTT+CGG | 0.539858 | 4.3:+276089 | None:intergenic |
| TGCAACAGATGCTGCTCCTG+GGG | 0.541734 | 4.3:-275600 | MS.gene047001:CDS |
| GGCGTCTCCGAACTTAGGCC+AGG | 0.544227 | 4.3:+276152 | None:intergenic |
| GCTAAGGTGGGGAGAATTGG+AGG | 0.546676 | 4.3:-276364 | MS.gene047001:CDS |
| TGATGAAAATGGAATCAAAA+GGG | 0.546960 | 4.3:-276286 | MS.gene047001:CDS |
| GGCAAGTTTGCGGGTTCGAG+TGG | 0.547824 | 4.3:+276212 | None:intergenic |
| AGTCTGAACCGGCGAAGCTA+AGG | 0.552460 | 4.3:-276380 | MS.gene047001:CDS |
| GGCACCGACGTCTTCATGAA+CGG | 0.554768 | 4.3:+276131 | None:intergenic |
| ACCCTACTGACAGCACCAAA+AGG | 0.555974 | 4.3:+275413 | None:intergenic |
| AGGCCAGGAACGGCGCTCAA+CGG | 0.556345 | 4.3:+276167 | None:intergenic |
| GCGTTTGCTGAGACGCGCGT+TGG | 0.556548 | 4.3:+276191 | None:intergenic |
| CCAACCTCTCGGAGGACACA+AGG | 0.558509 | 4.3:-275463 | MS.gene047001:CDS |
| GGTGGAAACCATAGTGAGGC+GGG | 0.568445 | 4.3:+276110 | None:intergenic |
| GTGGTTTGGGGCGTTCGAGA+AGG | 0.575414 | 4.3:+276079 | None:intergenic |
| CTCCGAACTTAGGCCAGGAA+CGG | 0.576631 | 4.3:+276157 | None:intergenic |
| ATCAAAAGACTGGCATGAGT+AGG | 0.579916 | 4.3:-275376 | MS.gene047001:CDS |
| TCCTAGCCTGAGAGCTGGTG+CGG | 0.588822 | 4.3:-275543 | MS.gene047001:CDS |
| TGAACGGCGTCTCCGAACTT+AGG | 0.601313 | 4.3:+276147 | None:intergenic |
| CTTTATTGAATTGAGACAGT+GGG | 0.603664 | 4.3:+275735 | None:intergenic |
| CTGGCTCTGACATGAGGCGG+AGG | 0.610847 | 4.3:-275511 | MS.gene047001:CDS |
| GTACCTCCTAGCCTGAGAGC+TGG | 0.611149 | 4.3:-275548 | MS.gene047001:CDS |
| CAAAAGACTGGCATGAGTAG+GGG | 0.615375 | 4.3:-275374 | MS.gene047001:CDS |
| TGAACCGGCGAAGCTAAGGT+GGG | 0.616663 | 4.3:-276376 | MS.gene047001:CDS |
| GCCTGAGAGCTGGTGCGGAG+AGG | 0.623849 | 4.3:-275538 | MS.gene047001:CDS |
| TACATATGCACCCTTTGCTG+AGG | 0.623928 | 4.3:+275568 | None:intergenic |
| TAGCAGGGAAGATGCTCAGA+GGG | 0.624825 | 4.3:-275330 | MS.gene047001:CDS |
| TTCGAGAAGGATCTCTTCGG+TGG | 0.624825 | 4.3:+276092 | None:intergenic |
| CAACCTCTCGGAGGACACAA+GGG | 0.627480 | 4.3:-275462 | MS.gene047001:CDS |
| CGGTGGAAACCATAGTGAGG+CGG | 0.629968 | 4.3:+276109 | None:intergenic |
| GGACTACTGGCTCTGACATG+AGG | 0.632778 | 4.3:-275517 | MS.gene047001:CDS |
| TGTTCGGGTAACCAACCTCT+CGG | 0.633411 | 4.3:-275474 | MS.gene047001:CDS |
| AATCTAATCAGACATGGCGG+CGG | 0.647531 | 4.3:-276409 | None:intergenic |
| GCACCAGCTCTCAGGCTAGG+AGG | 0.652161 | 4.3:+275545 | None:intergenic |
| GAACCGGCGAAGCTAAGGTG+GGG | 0.653069 | 4.3:-276375 | MS.gene047001:CDS |
| CCTTTATTGAATTGAGACAG+TGG | 0.657041 | 4.3:+275734 | None:intergenic |
| CTACTGGCTCTGACATGAGG+CGG | 0.663022 | 4.3:-275514 | MS.gene047001:CDS |
| GCTCCCTTGTGTCCTCCGAG+AGG | 0.679337 | 4.3:+275459 | None:intergenic |
| GGACCTATCACCTGACGTGG+TGG | 0.679711 | 4.3:+276309 | None:intergenic |
| TTATCAACAAAAGTCTCAGG+CGG | 0.681859 | 4.3:+275629 | None:intergenic |
| TTAGCAGGGAAGATGCTCAG+AGG | 0.686366 | 4.3:-275331 | MS.gene047001:CDS |
| ATCAACAACAGGTTCCAACA+AGG | 0.686562 | 4.3:-275777 | MS.gene047001:intron |
| GGAGAATTGGAGGAAGACGA+TGG | 0.696314 | 4.3:-276354 | MS.gene047001:CDS |
| TCAGGACCTATCACCTGACG+TGG | 0.706707 | 4.3:+276306 | None:intergenic |
| AACAACAGGTTCCAACAAGG+AGG | 0.706807 | 4.3:-275774 | MS.gene047001:intron |
| CTTCGGTGGAAACCATAGTG+AGG | 0.709928 | 4.3:+276106 | None:intergenic |
| TCGGGTAACCAACCTCTCGG+AGG | 0.730211 | 4.3:-275471 | MS.gene047001:CDS |
| GACGCCGTTCATGAAGACGT+CGG | 0.745318 | 4.3:-276135 | MS.gene047001:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACTTTAGATGATGAATTACT+GGG | - | chr4.3:275742-275761 | MS.gene047001:CDS | 25.0% |
| ! | TACTTTAGATGATGAATTAC+TGG | - | chr4.3:275741-275760 | MS.gene047001:CDS | 25.0% |
| ! | TGATGAAAATGGAATCAAAA+GGG | - | chr4.3:275363-275382 | MS.gene047001:CDS | 25.0% |
| !! | GTAATTCATCATCTAAAGTA+AGG | + | chr4.3:275741-275760 | None:intergenic | 25.0% |
| ATCAACAAACTCAATGGATA+TGG | - | chr4.3:276344-276363 | MS.gene047001:CDS | 30.0% | |
| CTGATGAAAATGGAATCAAA+AGG | - | chr4.3:275362-275381 | MS.gene047001:CDS | 30.0% | |
| CTTTATTGAATTGAGACAGT+GGG | + | chr4.3:275917-275936 | None:intergenic | 30.0% | |
| ! | TTCATCATCTAAAGTAAGGA+AGG | + | chr4.3:275737-275756 | None:intergenic | 30.0% |
| !! | ATTCGATGATGATGGTAATA+AGG | - | chr4.3:275399-275418 | MS.gene047001:CDS | 30.0% |
| !! | CTTTTGATTCCATTTTCATC+AGG | + | chr4.3:275364-275383 | None:intergenic | 30.0% |
| !! | TAAAGAGAAAAAGTACCAAG+TGG | + | chr4.3:275592-275611 | None:intergenic | 30.0% |
| ATGCTACAATAGACTAGACT+AGG | + | chr4.3:275823-275842 | None:intergenic | 35.0% | |
| CACAATCACACAAGAATGTT+CGG | - | chr4.3:275692-275711 | MS.gene047001:CDS | 35.0% | |
| CCACTGTCTCAATTCAATAA+AGG | - | chr4.3:275915-275934 | MS.gene047001:intron | 35.0% | |
| CCTTTATTGAATTGAGACAG+TGG | + | chr4.3:275918-275937 | None:intergenic | 35.0% | |
| CTTTGTGAACTTTGTTAGCA+GGG | - | chr4.3:276304-276323 | MS.gene047001:CDS | 35.0% | |
| GAGTACAAATTCGATGATGA+TGG | - | chr4.3:275391-275410 | MS.gene047001:CDS | 35.0% | |
| GGTTTATCAACAAAAGTCTC+AGG | + | chr4.3:276026-276045 | None:intergenic | 35.0% | |
| TCATGATCTGTATCAACAAC+AGG | - | chr4.3:275861-275880 | MS.gene047001:intron | 35.0% | |
| TTATCAACAAAAGTCTCAGG+CGG | + | chr4.3:276023-276042 | None:intergenic | 35.0% | |
| ! | GTTGCTATTGATCAAAAGAC+TGG | - | chr4.3:276263-276282 | MS.gene047001:CDS | 35.0% |
| !! | AAAAAGTACCAAGTGGTTTG+GGG | + | chr4.3:275585-275604 | None:intergenic | 35.0% |
| !! | AGAAAAAGTACCAAGTGGTT+TGG | + | chr4.3:275587-275606 | None:intergenic | 35.0% |
| !! | CAATAAAGGTGCTGTTCTTA+TGG | - | chr4.3:275929-275948 | MS.gene047001:intron | 35.0% |
| !! | GAAAAAGTACCAAGTGGTTT+GGG | + | chr4.3:275586-275605 | None:intergenic | 35.0% |
| AGGGCTATCAACAAACTCAA+TGG | - | chr4.3:276338-276357 | MS.gene047001:CDS | 40.0% | |
| ATCAAAAGACTGGCATGAGT+AGG | - | chr4.3:276273-276292 | MS.gene047001:CDS | 40.0% | |
| ATCAACAACAGGTTCCAACA+AGG | - | chr4.3:275872-275891 | MS.gene047001:intron | 40.0% | |
| ATCTCATCCTGAGAGTTGAA+TGG | - | chr4.3:276375-276394 | MS.gene047001:CDS | 40.0% | |
| GAACGATGAGAATTCTGTTC+GGG | - | chr4.3:276160-276179 | MS.gene047001:CDS | 40.0% | |
| GCTTTGTGAACTTTGTTAGC+AGG | - | chr4.3:276303-276322 | MS.gene047001:CDS | 40.0% | |
| GGAACGATGAGAATTCTGTT+CGG | - | chr4.3:276159-276178 | MS.gene047001:CDS | 40.0% | |
| GTGATAGGTCCTGATGAAAA+TGG | - | chr4.3:275352-275371 | MS.gene047001:CDS | 40.0% | |
| TCAAAAGACTGGCATGAGTA+GGG | - | chr4.3:276274-276293 | MS.gene047001:CDS | 40.0% | |
| TCTCATCCTGAGAGTTGAAT+GGG | - | chr4.3:276376-276395 | MS.gene047001:CDS | 40.0% | |
| ! | GACTTCAAGGTGTCCATATA+AGG | - | chr4.3:275986-276005 | MS.gene047001:intron | 40.0% |
| !!! | CTGATTTGCTTGAGCTTTTC+CGG | - | chr4.3:276213-276232 | MS.gene047001:CDS | 40.0% |
| AACAACAGGTTCCAACAAGG+AGG | - | chr4.3:275875-275894 | MS.gene047001:intron | 45.0% | |
| ACTAGTTATCTAGCGACCAG+GGG | - | chr4.3:275664-275683 | MS.gene047001:CDS | 45.0% | |
| AGGGTGATCATTGGACTTCA+AGG | - | chr4.3:275973-275992 | MS.gene047001:intron | 45.0% | |
| AGTCTTTGGATCCTCCTTGT+TGG | + | chr4.3:275889-275908 | None:intergenic | 45.0% | |
| CAAAAGACTGGCATGAGTAG+GGG | - | chr4.3:276275-276294 | MS.gene047001:CDS | 45.0% | |
| CGGAAAAGCTCAAGCAAATC+AGG | + | chr4.3:276215-276234 | None:intergenic | 45.0% | |
| CTTATGGTATGCAGGACTTG+CGG | - | chr4.3:275945-275964 | MS.gene047001:intron | 45.0% | |
| GTGTGATTGTGTAAATCCCC+TGG | + | chr4.3:275683-275702 | None:intergenic | 45.0% | |
| TACATATGCACCCTTTGCTG+AGG | + | chr4.3:276084-276103 | None:intergenic | 45.0% | |
| TTATGGTATGCAGGACTTGC+GGG | - | chr4.3:275946-275965 | MS.gene047001:intron | 45.0% | |
| ! | AGACTAGTTATCTAGCGACC+AGG | - | chr4.3:275662-275681 | MS.gene047001:CDS | 45.0% |
| ! | GACTAGTTATCTAGCGACCA+GGG | - | chr4.3:275663-275682 | MS.gene047001:CDS | 45.0% |
| ! | GTGCTGTTCTTATGGTATGC+AGG | - | chr4.3:275937-275956 | MS.gene047001:intron | 45.0% |
| ACCCTACTGACAGCACCAAA+AGG | + | chr4.3:276239-276258 | None:intergenic | 50.0% | |
| CTTCGGTGGAAACCATAGTG+AGG | + | chr4.3:275546-275565 | None:intergenic | 50.0% | |
| GAAGCTAAGGTGGGGAGAAT+TGG | - | chr4.3:275282-275301 | MS.gene047001:CDS | 50.0% | |
| GCGTTCGAGAAGGATCTCTT+CGG | + | chr4.3:275563-275582 | None:intergenic | 50.0% | |
| GGAGAATTGGAGGAAGACGA+TGG | - | chr4.3:275295-275314 | MS.gene047001:CDS | 50.0% | |
| GGCTGTGCGAGATCCTTATA+TGG | + | chr4.3:276002-276021 | None:intergenic | 50.0% | |
| TACTGACAGCACCAAAAGGC+CGG | + | chr4.3:276235-276254 | None:intergenic | 50.0% | |
| TAGCAGGGAAGATGCTCAGA+GGG | - | chr4.3:276319-276338 | MS.gene047001:CDS | 50.0% | |
| TGTTCGGGTAACCAACCTCT+CGG | - | chr4.3:276175-276194 | MS.gene047001:CDS | 50.0% | |
| TTACCACCACGTCAGGTGAT+AGG | - | chr4.3:275337-275356 | MS.gene047001:CDS | 50.0% | |
| TTAGCAGGGAAGATGCTCAG+AGG | - | chr4.3:276318-276337 | MS.gene047001:CDS | 50.0% | |
| TTCGAGAAGGATCTCTTCGG+TGG | + | chr4.3:275560-275579 | None:intergenic | 50.0% | |
| TTGCAACAGATGCTGCTCCT+GGG | - | chr4.3:276048-276067 | MS.gene047001:intron | 50.0% | |
| TTTCCTGTTACCACCACGTC+AGG | - | chr4.3:275330-275349 | MS.gene047001:CDS | 50.0% | |
| ! | CTTGAGCTTTTCCGGCCTTT+TGG | - | chr4.3:276221-276240 | MS.gene047001:CDS | 50.0% |
| !!! | GCCTTTTGGTGCTGTCAGTA+GGG | - | chr4.3:276235-276254 | MS.gene047001:CDS | 50.0% |
| ACTGGCATGAGTAGGGGCTT+TGG | - | chr4.3:276281-276300 | MS.gene047001:CDS | 55.0% | |
| AGTCTGAACCGGCGAAGCTA+AGG | - | chr4.3:275269-275288 | MS.gene047001:CDS | 55.0% | |
| ATGCAGGACTTGCGGGAAGA+AGG | - | chr4.3:275953-275972 | MS.gene047001:intron | 55.0% | |
| CAACCTCTCGGAGGACACAA+GGG | - | chr4.3:276187-276206 | MS.gene047001:CDS | 55.0% | |
| CGGTGGAAACCATAGTGAGG+CGG | + | chr4.3:275543-275562 | None:intergenic | 55.0% | |
| CTCCGAACTTAGGCCAGGAA+CGG | + | chr4.3:275495-275514 | None:intergenic | 55.0% | |
| GACAGTGGGTCAGCAGTCTT+TGG | + | chr4.3:275903-275922 | None:intergenic | 55.0% | |
| GACGCCGTTCATGAAGACGT+CGG | - | chr4.3:275514-275533 | MS.gene047001:CDS | 55.0% | |
| GCGGGAAGAAGGGTGATCAT+TGG | - | chr4.3:275964-275983 | MS.gene047001:intron | 55.0% | |
| GCTAAGGTGGGGAGAATTGG+AGG | - | chr4.3:275285-275304 | MS.gene047001:CDS | 55.0% | |
| GCTTCAGCTGCCTCAGCAAA+GGG | - | chr4.3:276071-276090 | MS.gene047001:intron | 55.0% | |
| GGAAGACGATGGCGAAGATC+TGG | - | chr4.3:275306-275325 | MS.gene047001:CDS | 55.0% | |
| GGAGCAGCATCTGTTGCAAC+AGG | + | chr4.3:276047-276066 | None:intergenic | 55.0% | |
| GGCGGCAATTCAGTCTGAAC+CGG | - | chr4.3:275258-275277 | MS.gene047001:CDS | 55.0% | |
| GGTGGAAACCATAGTGAGGC+GGG | + | chr4.3:275542-275561 | None:intergenic | 55.0% | |
| GTTGCAACAGATGCTGCTCC+TGG | - | chr4.3:276047-276066 | MS.gene047001:intron | 55.0% | |
| TCACCTGACGTGGTGGTAAC+AGG | + | chr4.3:275336-275355 | None:intergenic | 55.0% | |
| TCAGGACCTATCACCTGACG+TGG | + | chr4.3:275346-275365 | None:intergenic | 55.0% | |
| TGAACCGGCGAAGCTAAGGT+GGG | - | chr4.3:275273-275292 | MS.gene047001:CDS | 55.0% | |
| TGAACGGCGTCTCCGAACTT+AGG | + | chr4.3:275505-275524 | None:intergenic | 55.0% | |
| TGCAACAGATGCTGCTCCTG+GGG | - | chr4.3:276049-276068 | MS.gene047001:intron | 55.0% | |
| TGCAGGACTTGCGGGAAGAA+GGG | - | chr4.3:275954-275973 | MS.gene047001:intron | 55.0% | |
| !! | CTACTGGCTCTGACATGAGG+CGG | - | chr4.3:276135-276154 | MS.gene047001:CDS | 55.0% |
| !! | GGACTACTGGCTCTGACATG+AGG | - | chr4.3:276132-276151 | MS.gene047001:CDS | 55.0% |
| !! | GGCACCGACGTCTTCATGAA+CGG | + | chr4.3:275521-275540 | None:intergenic | 55.0% |
| !!! | GGCCTTTTGGTGCTGTCAGT+AGG | - | chr4.3:276234-276253 | MS.gene047001:CDS | 55.0% |
| CCAACCTCTCGGAGGACACA+AGG | - | chr4.3:276186-276205 | MS.gene047001:CDS | 60.0% | |
| CCTTGTGTCCTCCGAGAGGT+TGG | + | chr4.3:276189-276208 | None:intergenic | 60.0% | |
| CGCCGTTCCTGGCCTAAGTT+CGG | - | chr4.3:275490-275509 | MS.gene047001:CDS | 60.0% | |
| CTCGAACGCCCCAAACCACT+TGG | - | chr4.3:275574-275593 | MS.gene047001:CDS | 60.0% | |
| CTGAACCGGCGAAGCTAAGG+TGG | - | chr4.3:275272-275291 | MS.gene047001:CDS | 60.0% | |
| GAACCGGCGAAGCTAAGGTG+GGG | - | chr4.3:275274-275293 | MS.gene047001:CDS | 60.0% | |
| GGACCTATCACCTGACGTGG+TGG | + | chr4.3:275343-275362 | None:intergenic | 60.0% | |
| GGCAAGTTTGCGGGTTCGAG+TGG | + | chr4.3:275440-275459 | None:intergenic | 60.0% | |
| GGCTTCAGCTGCCTCAGCAA+AGG | - | chr4.3:276070-276089 | MS.gene047001:intron | 60.0% | |
| GGGTGGCCCATTCAACTCTC+AGG | + | chr4.3:276385-276404 | None:intergenic | 60.0% | |
| GTACCTCCTAGCCTGAGAGC+TGG | - | chr4.3:276101-276120 | MS.gene047001:CDS | 60.0% | |
| TCCTAGCCTGAGAGCTGGTG+CGG | - | chr4.3:276106-276125 | MS.gene047001:CDS | 60.0% | |
| TCGGGTAACCAACCTCTCGG+AGG | - | chr4.3:276178-276197 | MS.gene047001:CDS | 60.0% | |
| TCTCCCCACCTTAGCTTCGC+CGG | + | chr4.3:275280-275299 | None:intergenic | 60.0% | |
| ! | ACGCGCGTTGGCAAGTTTGC+GGG | + | chr4.3:275449-275468 | None:intergenic | 60.0% |
| ! | GACGCGCGTTGGCAAGTTTG+CGG | + | chr4.3:275450-275469 | None:intergenic | 60.0% |
| ! | GTGGTTTGGGGCGTTCGAGA+AGG | + | chr4.3:275573-275592 | None:intergenic | 60.0% |
| AGGCCAGGAACGGCGCTCAA+CGG | + | chr4.3:275485-275504 | None:intergenic | 65.0% | |
| GCACCAGCTCTCAGGCTAGG+AGG | + | chr4.3:276107-276126 | None:intergenic | 65.0% | |
| GCTCCCTTGTGTCCTCCGAG+AGG | + | chr4.3:276193-276212 | None:intergenic | 65.0% | |
| GCTGGTGCGGAGAGGACTAC+TGG | - | chr4.3:276119-276138 | MS.gene047001:CDS | 65.0% | |
| GGCGTCTCCGAACTTAGGCC+AGG | + | chr4.3:275500-275519 | None:intergenic | 65.0% | |
| TCCGCACCAGCTCTCAGGCT+AGG | + | chr4.3:276110-276129 | None:intergenic | 65.0% | |
| TCCTCTCCGCACCAGCTCTC+AGG | + | chr4.3:276115-276134 | None:intergenic | 65.0% | |
| ! | GCGTTTGCTGAGACGCGCGT+TGG | + | chr4.3:275461-275480 | None:intergenic | 65.0% |
| !! | CTGGCTCTGACATGAGGCGG+AGG | - | chr4.3:276138-276157 | MS.gene047001:CDS | 65.0% |
| GCCTGAGAGCTGGTGCGGAG+AGG | - | chr4.3:276111-276130 | MS.gene047001:CDS | 70.0% | |
| GCTGAGGCAGCTGAAGCCCC+AGG | + | chr4.3:276068-276087 | None:intergenic | 70.0% | |
| ! | CGTCGGTGCCCGCCTCACTA+TGG | - | chr4.3:275531-275550 | MS.gene047001:CDS | 70.0% |
| ! | GCGCCGTTGAGCGCCGTTCC+TGG | - | chr4.3:275479-275498 | MS.gene047001:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 275253 | 276418 | 275253 | ID=MS.gene047001 |
| chr4.3 | mRNA | 275253 | 276418 | 275253 | ID=MS.gene047001.t1;Parent=MS.gene047001 |
| chr4.3 | exon | 276076 | 276418 | 276076 | ID=MS.gene047001.t1.exon1;Parent=MS.gene047001.t1 |
| chr4.3 | CDS | 276076 | 276418 | 276076 | ID=cds.MS.gene047001.t1;Parent=MS.gene047001.t1 |
| chr4.3 | exon | 275253 | 275788 | 275253 | ID=MS.gene047001.t1.exon2;Parent=MS.gene047001.t1 |
| chr4.3 | CDS | 275253 | 275788 | 275253 | ID=cds.MS.gene047001.t1;Parent=MS.gene047001.t1 |
| Gene Sequence |
| Protein sequence |
