Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002506.t1 | XP_024631490.1 | 94.1 | 306 | 18 | 0 | 1 | 306 | 2 | 307 | 1.80E-166 | 595.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002506.t1 | Q6AY46 | 45.6 | 294 | 145 | 6 | 10 | 300 | 4 | 285 | 6.1e-62 | 239.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002506.t1 | A2Q516 | 94.1 | 306 | 18 | 0 | 1 | 306 | 2 | 307 | 1.3e-166 | 595.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene002506 | MS.gene64211 | PPI |
MS.gene21989 | MS.gene002506 | PPI |
MS.gene002506 | MS.gene30096 | PPI |
MS.gene27063 | MS.gene002506 | PPI |
MS.gene027187 | MS.gene002506 | PPI |
MS.gene64008 | MS.gene002506 | PPI |
MS.gene002506 | MS.gene82633 | PPI |
MS.gene24165 | MS.gene002506 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002506.t1 | MTR_6g047800 | 77.994 | 309 | 62 | 4 | 1 | 303 | 1 | 309 | 1.19e-172 | 480 |
MS.gene002506.t1 | MTR_6g047800 | 79.000 | 300 | 57 | 4 | 10 | 303 | 1 | 300 | 1.20e-169 | 472 |
MS.gene002506.t1 | MTR_2g014590 | 93.074 | 231 | 16 | 0 | 1 | 231 | 2 | 232 | 6.28e-161 | 448 |
MS.gene002506.t1 | MTR_2g014570 | 98.361 | 61 | 1 | 0 | 246 | 306 | 6 | 66 | 2.07e-38 | 130 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002506.t1 | AT5G14600 | 69.182 | 318 | 86 | 2 | 1 | 306 | 1 | 318 | 7.22e-165 | 461 |
Find 57 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTTGCTTGGTTCTTGAATC+TGG | 0.235361 | 2.1:+70533772 | MS.gene002506:CDS |
CTCTAAAGTATTCAACAATA+AGG | 0.250501 | 2.1:+70533627 | MS.gene002506:CDS |
GATTAATCAGTTGTGGAGTT+AGG | 0.260288 | 2.1:+70534746 | MS.gene002506:CDS |
TTGTGGAGTTAGGGACATTC+AGG | 0.262187 | 2.1:+70534756 | MS.gene002506:CDS |
GATTGGATTGGAAAGCCTTT+TGG | 0.269508 | 2.1:+70533604 | MS.gene002506:CDS |
TAGCTCCCACACCAGAATTA+TGG | 0.286409 | 2.1:+70533668 | MS.gene002506:CDS |
GGATTTCCTGATGAGTTTAA+TGG | 0.286421 | 2.1:+70534784 | MS.gene002506:CDS |
AACACTAGAGTCCATAATTC+TGG | 0.292506 | 2.1:-70533679 | None:intergenic |
CAGATGCTGCCCTTTGTTCA+TGG | 0.315015 | 2.1:-70533870 | None:intergenic |
TCCTGATGAGTTTAATGGCT+TGG | 0.351169 | 2.1:+70534789 | MS.gene002506:CDS |
ATGTATTTGGAGATTGTTCC+TGG | 0.387434 | 2.1:+70533751 | MS.gene002506:CDS |
GTGAAGACGAAAAGCTTTCA+TGG | 0.388067 | 2.1:+70536918 | MS.gene002506:CDS |
CTTGAATCTGGAACTGGTAG+TGG | 0.396327 | 2.1:+70533784 | MS.gene002506:CDS |
CGTTGTACTTGTTCGATACA+TGG | 0.406361 | 2.1:-70534907 | None:intergenic |
TTTAAACATTCTGATTGGAT+TGG | 0.406520 | 2.1:+70533592 | MS.gene002506:CDS |
AATGTTTAAAAGCACCTAAA+GGG | 0.409810 | 2.1:-70533579 | None:intergenic |
CTTTGACTACTTCACTTGCT+AGG | 0.430680 | 2.1:+70533809 | MS.gene002506:CDS |
TCTAAAGTATTCAACAATAA+GGG | 0.439227 | 2.1:+70533628 | MS.gene002506:CDS |
ATTAATCAGTTGTGGAGTTA+GGG | 0.447067 | 2.1:+70534747 | MS.gene002506:CDS |
GCCAAGCCATTAAACTCATC+AGG | 0.456967 | 2.1:-70534790 | None:intergenic |
GAATGTTTAAAAGCACCTAA+AGG | 0.458705 | 2.1:-70533580 | None:intergenic |
GATTGCTGTCACGAATTGTT+CGG | 0.459234 | 2.1:-70533486 | None:intergenic |
GGAGATTGTTCCTGGTTGCT+TGG | 0.459797 | 2.1:+70533759 | MS.gene002506:CDS |
TTGGTTCTTGAATCTGGAAC+TGG | 0.463211 | 2.1:+70533778 | MS.gene002506:CDS |
GCACTTCAGTCCTGCTTCAC+AGG | 0.472308 | 2.1:+70534940 | MS.gene002506:CDS |
TTGAATACTTTAGAGCCAAA+AGG | 0.478439 | 2.1:-70533619 | None:intergenic |
AATGTATAAACATGTCCGTT+TGG | 0.481340 | 2.1:-70533841 | None:intergenic |
GAAAGATATAAAGACATTTG+AGG | 0.513281 | 2.1:+70536866 | MS.gene002506:intron |
ATTTGATTTCCATGAACAAA+GGG | 0.526401 | 2.1:+70533861 | MS.gene002506:CDS |
GCTAGGGCAGTTGCGCCAAA+CGG | 0.528305 | 2.1:+70533826 | MS.gene002506:CDS |
CATTTGATTTCCATGAACAA+AGG | 0.531378 | 2.1:+70533860 | MS.gene002506:CDS |
GCGAAAATGCTTAAACAAGA+TGG | 0.531846 | 2.1:+70534865 | MS.gene002506:CDS |
CAATCCTACTTCTTCTGTCA+TGG | 0.536704 | 2.1:+70537004 | MS.gene002506:CDS |
CCTAAAAGTACCTGTGAAGC+AGG | 0.543977 | 2.1:-70534950 | None:intergenic |
GTTAGGGACATTCAGGGTGA+GGG | 0.545604 | 2.1:+70534763 | MS.gene002506:CDS |
TTTGACTACTTCACTTGCTA+GGG | 0.548143 | 2.1:+70533810 | MS.gene002506:CDS |
GAAAGCTGTAACAGTGTCTG+AGG | 0.556493 | 2.1:+70533540 | MS.gene002506:CDS |
TGTGGAGTTAGGGACATTCA+GGG | 0.558563 | 2.1:+70534757 | MS.gene002506:CDS |
TTAAGCAGATTAATCAGTTG+TGG | 0.568079 | 2.1:+70534739 | MS.gene002506:CDS |
GGACTCTAGTGTTAAATCAC+AGG | 0.580184 | 2.1:+70533689 | MS.gene002506:CDS |
AGAGTCCATAATTCTGGTGT+GGG | 0.584035 | 2.1:-70533673 | None:intergenic |
TAGAGTCCATAATTCTGGTG+TGG | 0.585946 | 2.1:-70533674 | None:intergenic |
AGTTAGGGACATTCAGGGTG+AGG | 0.591437 | 2.1:+70534762 | MS.gene002506:CDS |
GGAATGGCTAACCAAGGTTG+AGG | 0.592393 | 2.1:-70534835 | None:intergenic |
GTTATTGTTTACGTAAAACA+TGG | 0.594494 | 2.1:+70533511 | MS.gene002506:CDS |
CTAGCCATGACAGAAGAAGT+AGG | 0.599460 | 2.1:-70537008 | None:intergenic |
AACAAAGGGCAGCATCTGCT+AGG | 0.601675 | 2.1:+70533875 | MS.gene002506:CDS |
AAGAGAAGACAGTGTTCAGA+TGG | 0.602416 | 2.1:+70536966 | MS.gene002506:CDS |
GAACACTGTCTTCTCTTGCA+AGG | 0.615282 | 2.1:-70536960 | None:intergenic |
GATTCAAGAACCAAGCAACC+AGG | 0.619604 | 2.1:-70533769 | None:intergenic |
TGACCTCTAGCCTCATCACA+AGG | 0.640370 | 2.1:-70537032 | None:intergenic |
CATGGCTAGACCTTGTGATG+AGG | 0.646852 | 2.1:+70537022 | MS.gene002506:CDS |
AAAGCTGTAACAGTGTCTGA+GGG | 0.675726 | 2.1:+70533541 | MS.gene002506:CDS |
AGACCTTGTGATGAGGCTAG+AGG | 0.676272 | 2.1:+70537029 | MS.gene002506:CDS |
AGCTTTCATGGAGATGACAG+TGG | 0.682269 | 2.1:+70536930 | MS.gene002506:CDS |
GCTGAAGGAATGGCTAACCA+AGG | 0.691556 | 2.1:-70534841 | None:intergenic |
GATGAGGCTAGAGGTCACAC+AGG | 0.703330 | 2.1:+70537038 | MS.gene002506:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ACATAAAATACAATTAATTT+AGG | + | chr2.1:70536805-70536824 | MS.gene002506:intron | 10.0% |
!! | TGATTTAAATTTCTTATATA+TGG | + | chr2.1:70534554-70534573 | MS.gene002506:intron | 10.0% |
!!! | TTTTTTAGAAACTTAATATA+TGG | + | chr2.1:70534071-70534090 | MS.gene002506:intron | 10.0% |
!! | AAAATCAGAAAATATATATG+AGG | - | chr2.1:70535192-70535211 | None:intergenic | 15.0% |
!! | AGAATAAATAGAATAGAATA+TGG | - | chr2.1:70536772-70536791 | None:intergenic | 15.0% |
!! | GAATAAATAGAATAGAATAT+GGG | - | chr2.1:70536771-70536790 | None:intergenic | 15.0% |
!! | TCGAAAAAATATATATTCAT+TGG | + | chr2.1:70535327-70535346 | MS.gene002506:intron | 15.0% |
!!! | TAATTTGTTAATTATTTGCA+GGG | + | chr2.1:70534696-70534715 | MS.gene002506:intron | 15.0% |
!!! | TAGTTTTGTTATTATGTATT+TGG | + | chr2.1:70533738-70533757 | MS.gene002506:CDS | 15.0% |
!!! | TTAATTTGTTAATTATTTGC+AGG | + | chr2.1:70534695-70534714 | MS.gene002506:intron | 15.0% |
!! | AAGTGCATTTAAAAATAGAT+TGG | - | chr2.1:70535137-70535156 | None:intergenic | 20.0% |
!! | AATTCTTCTAATCAATTCTT+TGG | + | chr2.1:70535751-70535770 | MS.gene002506:intron | 20.0% |
!! | ACTGTATTAAGAGATATAAA+AGG | + | chr2.1:70536674-70536693 | MS.gene002506:intron | 20.0% |
!! | ATTCTTCTAATCAATTCTTT+GGG | + | chr2.1:70535752-70535771 | MS.gene002506:intron | 20.0% |
!! | CATAAGCAAAATATAAACAT+TGG | - | chr2.1:70536845-70536864 | None:intergenic | 20.0% |
!! | CTGTATTAAGAGATATAAAA+GGG | + | chr2.1:70536675-70536694 | MS.gene002506:intron | 20.0% |
!! | TAACAAAATTGTGTAACAAA+GGG | + | chr2.1:70536640-70536659 | MS.gene002506:intron | 20.0% |
!! | TACTTCATTATTCAAAATCT+TGG | + | chr2.1:70534461-70534480 | MS.gene002506:intron | 20.0% |
!! | TATGTTATTAGAAAGTAAAC+AGG | - | chr2.1:70534977-70534996 | None:intergenic | 20.0% |
!! | TGTATTAAGAGATATAAAAG+GGG | + | chr2.1:70536676-70536695 | MS.gene002506:intron | 20.0% |
!! | TTAACTATCCTAATATTTGA+TGG | - | chr2.1:70536188-70536207 | None:intergenic | 20.0% |
!!! | TCTAAAGTATTCAACAATAA+GGG | + | chr2.1:70533628-70533647 | MS.gene002506:CDS | 20.0% |
!!! | TTCATTTTTACTTTGTATGA+AGG | + | chr2.1:70534997-70535016 | MS.gene002506:intron | 20.0% |
! | AAACATTGGAATATGTTAGT+AGG | - | chr2.1:70536831-70536850 | None:intergenic | 25.0% |
! | AAACTACAGAGAATACATTT+CGG | + | chr2.1:70535081-70535100 | MS.gene002506:intron | 25.0% |
! | AACAAAATTGTGTAACAAAG+GGG | + | chr2.1:70536641-70536660 | MS.gene002506:intron | 25.0% |
! | AGCAATAAGAGATAGAAAAA+GGG | + | chr2.1:70535443-70535462 | MS.gene002506:intron | 25.0% |
! | ATAGAATAGAATATGGGAAT+CGG | - | chr2.1:70536765-70536784 | None:intergenic | 25.0% |
! | CTAACAAAATTGTGTAACAA+AGG | + | chr2.1:70536639-70536658 | MS.gene002506:intron | 25.0% |
! | GAAAGATATAAAGACATTTG+AGG | + | chr2.1:70536866-70536885 | MS.gene002506:intron | 25.0% |
! | GAACAATTTGAATTATAAGC+TGG | - | chr2.1:70535900-70535919 | None:intergenic | 25.0% |
! | GTTATTGTTTACGTAAAACA+TGG | + | chr2.1:70533511-70533530 | MS.gene002506:CDS | 25.0% |
! | TCTCTTGATCATAACTAAAA+AGG | - | chr2.1:70535051-70535070 | None:intergenic | 25.0% |
! | TGAATTTATTGATGAAACTC+TGG | + | chr2.1:70535361-70535380 | MS.gene002506:intron | 25.0% |
! | TTCCAAAATAATTTCCTCTA+TGG | + | chr2.1:70536270-70536289 | MS.gene002506:intron | 25.0% |
! | TTTAAACATTCTGATTGGAT+TGG | + | chr2.1:70533592-70533611 | MS.gene002506:CDS | 25.0% |
!! | ATTTGATTTCCATGAACAAA+GGG | + | chr2.1:70533861-70533880 | MS.gene002506:CDS | 25.0% |
!! | CTTAAAGCAATTTTTCTCAA+GGG | - | chr2.1:70535849-70535868 | None:intergenic | 25.0% |
!! | TCTTAAAGCAATTTTTCTCA+AGG | - | chr2.1:70535850-70535869 | None:intergenic | 25.0% |
!! | TTCCATAGAGGAAATTATTT+TGG | - | chr2.1:70536275-70536294 | None:intergenic | 25.0% |
!! | TTCTTTTCTTCCTATGATAA+GGG | + | chr2.1:70534631-70534650 | MS.gene002506:intron | 25.0% |
!! | TTTCTTTTCTTCCTATGATA+AGG | + | chr2.1:70534630-70534649 | MS.gene002506:intron | 25.0% |
!! | TTTTACTAAATAGCGTATCA+CGG | - | chr2.1:70534008-70534027 | None:intergenic | 25.0% |
!!! | AATGTTTAAAAGCACCTAAA+GGG | - | chr2.1:70533582-70533601 | None:intergenic | 25.0% |
!!! | AATTATTTTGGAAATGGAGA+TGG | - | chr2.1:70536263-70536282 | None:intergenic | 25.0% |
!!! | AGAGGAAATTATTTTGGAAA+TGG | - | chr2.1:70536269-70536288 | None:intergenic | 25.0% |
!!! | CTCTAAAGTATTCAACAATA+AGG | + | chr2.1:70533627-70533646 | MS.gene002506:CDS | 25.0% |
!!! | TTTTTCGAACAAGCTAAAAT+GGG | - | chr2.1:70535315-70535334 | None:intergenic | 25.0% |
!!! | TTTTTTCGAACAAGCTAAAA+TGG | - | chr2.1:70535316-70535335 | None:intergenic | 25.0% |
AATCAGAGTTGTGTTACAAA+AGG | + | chr2.1:70535395-70535414 | MS.gene002506:intron | 30.0% | |
AATGTATAAACATGTCCGTT+TGG | - | chr2.1:70533844-70533863 | None:intergenic | 30.0% | |
AGTACTGTTATGATGAATGA+AGG | - | chr2.1:70535716-70535735 | None:intergenic | 30.0% | |
ATCAGAGTTGTGTTACAAAA+GGG | + | chr2.1:70535396-70535415 | MS.gene002506:intron | 30.0% | |
ATTAATCAGTTGTGGAGTTA+GGG | + | chr2.1:70534747-70534766 | MS.gene002506:CDS | 30.0% | |
ATTACCAAGTCTCAAACAAA+AGG | - | chr2.1:70535943-70535962 | None:intergenic | 30.0% | |
ATTCATTGCAATTCTGATCT+TGG | - | chr2.1:70536497-70536516 | None:intergenic | 30.0% | |
ATTTACTGGATAATTGCTTG+TGG | + | chr2.1:70536586-70536605 | MS.gene002506:intron | 30.0% | |
GAAACTTAATATATGGTCCA+AGG | + | chr2.1:70534078-70534097 | MS.gene002506:intron | 30.0% | |
GAATTCTATCAGAATCAGTT+TGG | + | chr2.1:70535279-70535298 | MS.gene002506:intron | 30.0% | |
GAGCAATAAGAGATAGAAAA+AGG | + | chr2.1:70535442-70535461 | MS.gene002506:intron | 30.0% | |
GGTAGTAATTAATGGTTACA+AGG | - | chr2.1:70536476-70536495 | None:intergenic | 30.0% | |
GTACTGTTATGATGAATGAA+GGG | - | chr2.1:70535715-70535734 | None:intergenic | 30.0% | |
TACTGTTATGATGAATGAAG+GGG | - | chr2.1:70535714-70535733 | None:intergenic | 30.0% | |
TAGAATAGAATATGGGAATC+GGG | - | chr2.1:70536764-70536783 | None:intergenic | 30.0% | |
TATCCTAATATTTGATGGAG+AGG | - | chr2.1:70536183-70536202 | None:intergenic | 30.0% | |
TGGATTTATTGACGAAACTT+TGG | + | chr2.1:70536606-70536625 | MS.gene002506:intron | 30.0% | |
TTAAGCAGATTAATCAGTTG+TGG | + | chr2.1:70534739-70534758 | MS.gene002506:CDS | 30.0% | |
TTACCAAGTCTCAAACAAAA+GGG | - | chr2.1:70535942-70535961 | None:intergenic | 30.0% | |
TTACTTTGTATGAAGGTAGA+TGG | + | chr2.1:70535004-70535023 | MS.gene002506:intron | 30.0% | |
TTCTACATAACCCTTATCAT+AGG | - | chr2.1:70534644-70534663 | None:intergenic | 30.0% | |
TTGTCAAATAGCAGTTACAT+AGG | + | chr2.1:70534031-70534050 | MS.gene002506:intron | 30.0% | |
TTGTGCATGAAATTCTACTT+TGG | - | chr2.1:70536030-70536049 | None:intergenic | 30.0% | |
! | AATTTCTGCCATTTCTGTTT+GGG | + | chr2.1:70536206-70536225 | MS.gene002506:intron | 30.0% |
! | CAGTTTTACTCTTGATTTAC+TGG | + | chr2.1:70536572-70536591 | MS.gene002506:intron | 30.0% |
! | CATTTGATTTCCATGAACAA+AGG | + | chr2.1:70533860-70533879 | MS.gene002506:CDS | 30.0% |
! | CTGATCTTGGTAGTAATTAA+TGG | - | chr2.1:70536484-70536503 | None:intergenic | 30.0% |
! | GTGCTTTTAAACATTCTGAT+TGG | + | chr2.1:70533587-70533606 | MS.gene002506:CDS | 30.0% |
! | TAATTTCTGCCATTTCTGTT+TGG | + | chr2.1:70536205-70536224 | MS.gene002506:intron | 30.0% |
!! | AACTTTATTCTGGCTTCAAT+TGG | - | chr2.1:70534150-70534169 | None:intergenic | 30.0% |
!! | AAGAGCGTTTAGAAGATTAA+TGG | - | chr2.1:70535553-70535572 | None:intergenic | 30.0% |
!! | ACTTTATTCTGGCTTCAATT+GGG | - | chr2.1:70534149-70534168 | None:intergenic | 30.0% |
!! | AGTGGAACGATATTTTGAAT+TGG | - | chr2.1:70536138-70536157 | None:intergenic | 30.0% |
!! | GAACGATATTTTGAATTGGA+GGG | - | chr2.1:70536134-70536153 | None:intergenic | 30.0% |
!! | GAATGTTTAAAAGCACCTAA+AGG | - | chr2.1:70533583-70533602 | None:intergenic | 30.0% |
!! | TAAAGTGCTAACTTGTTGAT+TGG | + | chr2.1:70535641-70535660 | MS.gene002506:intron | 30.0% |
!! | TTGAATACTTTAGAGCCAAA+AGG | - | chr2.1:70533622-70533641 | None:intergenic | 30.0% |
AACACTAGAGTCCATAATTC+TGG | - | chr2.1:70533682-70533701 | None:intergenic | 35.0% | |
AATTGCAATGAATAACGACC+TGG | + | chr2.1:70536504-70536523 | MS.gene002506:intron | 35.0% | |
ACAGTGGATAGCAAAAAATG+TGG | - | chr2.1:70534325-70534344 | None:intergenic | 35.0% | |
ACTGTTATGATGAATGAAGG+GGG | - | chr2.1:70535713-70535732 | None:intergenic | 35.0% | |
AGAAAATGCACACAAAGATG+AGG | - | chr2.1:70535215-70535234 | None:intergenic | 35.0% | |
AGAATAGAATATGGGAATCG+GGG | - | chr2.1:70536763-70536782 | None:intergenic | 35.0% | |
AGAGAAGTTTGAATCACAGA+AGG | - | chr2.1:70536355-70536374 | None:intergenic | 35.0% | |
AGGACGACATGATCATTTAT+GGG | - | chr2.1:70535576-70535595 | None:intergenic | 35.0% | |
ATGTATTTGGAGATTGTTCC+TGG | + | chr2.1:70533751-70533770 | MS.gene002506:CDS | 35.0% | |
CATCCTCTCCATCAAATATT+AGG | + | chr2.1:70536177-70536196 | MS.gene002506:intron | 35.0% | |
CCACTATTGATACCTTGTAA+GGG | + | chr2.1:70536055-70536074 | MS.gene002506:intron | 35.0% | |
GAACATGATCAATTCCATAG+AGG | - | chr2.1:70536287-70536306 | None:intergenic | 35.0% | |
GATTAATCAGTTGTGGAGTT+AGG | + | chr2.1:70534746-70534765 | MS.gene002506:CDS | 35.0% | |
GCGAAAATGCTTAAACAAGA+TGG | + | chr2.1:70534865-70534884 | MS.gene002506:CDS | 35.0% | |
GGATTTCCTGATGAGTTTAA+TGG | + | chr2.1:70534784-70534803 | MS.gene002506:CDS | 35.0% | |
TACCAAGTCTCAAACAAAAG+GGG | - | chr2.1:70535941-70535960 | None:intergenic | 35.0% | |
TACCAGTGTTAGAATCAGTT+TGG | + | chr2.1:70536543-70536562 | MS.gene002506:intron | 35.0% | |
TATCAGAAAACAGTTGATCC+AGG | - | chr2.1:70536525-70536544 | None:intergenic | 35.0% | |
TATTTCCTTAGTCACACGTA+AGG | + | chr2.1:70534523-70534542 | MS.gene002506:intron | 35.0% | |
TGCATGAAATTCTACTTTGG+AGG | - | chr2.1:70536027-70536046 | None:intergenic | 35.0% | |
TGTCAGCATAAAGTTCTACA+CGG | - | chr2.1:70534356-70534375 | None:intergenic | 35.0% | |
TTCCATTGAAGAATCTAGTG+CGG | - | chr2.1:70535600-70535619 | None:intergenic | 35.0% | |
TTTGAATCACAGAAGGATTG+AGG | - | chr2.1:70536348-70536367 | None:intergenic | 35.0% | |
! | AATTTTTCTCAAGGGACTGA+AGG | - | chr2.1:70535841-70535860 | None:intergenic | 35.0% |
! | ATTTCTGCCATTTCTGTTTG+GGG | + | chr2.1:70536207-70536226 | MS.gene002506:intron | 35.0% |
! | CCTTACAAGGTATCAATAGT+GGG | - | chr2.1:70536057-70536076 | None:intergenic | 35.0% |
! | TTCTACTTTGGAGGATTTGA+AGG | - | chr2.1:70536018-70536037 | None:intergenic | 35.0% |
! | TTTGACTACTTCACTTGCTA+GGG | + | chr2.1:70533810-70533829 | MS.gene002506:CDS | 35.0% |
!! | AGACTTGGTAATGATTCACA+AGG | + | chr2.1:70535951-70535970 | MS.gene002506:intron | 35.0% |
!! | CTTGGCTGATTCTGTATTTT+TGG | + | chr2.1:70534807-70534826 | MS.gene002506:CDS | 35.0% |
!! | GACTTGGTAATGATTCACAA+GGG | + | chr2.1:70535952-70535971 | MS.gene002506:intron | 35.0% |
!! | GGAACGATATTTTGAATTGG+AGG | - | chr2.1:70536135-70536154 | None:intergenic | 35.0% |
!! | TATTTTGAATTGGAGGGTGT+AGG | - | chr2.1:70536128-70536147 | None:intergenic | 35.0% |
!! | TCAGTTTTTCAGAACCCTTT+AGG | + | chr2.1:70533565-70533584 | MS.gene002506:CDS | 35.0% |
!!! | TTTTTAGAACGTGCCTATGA+AGG | - | chr2.1:70536429-70536448 | None:intergenic | 35.0% |
AAACTCCTTACCAGAGATGA+TGG | - | chr2.1:70535784-70535803 | None:intergenic | 40.0% | |
AAAGCTGTAACAGTGTCTGA+GGG | + | chr2.1:70533541-70533560 | MS.gene002506:CDS | 40.0% | |
AACGCGAGAAAAATCAAGGT+TGG | - | chr2.1:70535523-70535542 | None:intergenic | 40.0% | |
AAGAGAAGACAGTGTTCAGA+TGG | + | chr2.1:70536966-70536985 | MS.gene002506:CDS | 40.0% | |
AATGGTTACAAGGTGCAGAA+TGG | - | chr2.1:70536466-70536485 | None:intergenic | 40.0% | |
AGAGTCCATAATTCTGGTGT+GGG | - | chr2.1:70533676-70533695 | None:intergenic | 40.0% | |
AGCACTTTAGACAAAGTCCT+TGG | - | chr2.1:70535630-70535649 | None:intergenic | 40.0% | |
AGCCAGAATAAAGTTCTGTG+TGG | + | chr2.1:70534155-70534174 | MS.gene002506:intron | 40.0% | |
ATAGTCCATCATCTCTGGTA+AGG | + | chr2.1:70535776-70535795 | MS.gene002506:intron | 40.0% | |
ATCTCTGGTAAGGAGTTTAC+TGG | + | chr2.1:70535786-70535805 | MS.gene002506:intron | 40.0% | |
CAATCCTACTTCTTCTGTCA+TGG | + | chr2.1:70537004-70537023 | MS.gene002506:CDS | 40.0% | |
CAATCTCTATTTCCTCTTCC+TGG | - | chr2.1:70533908-70533927 | None:intergenic | 40.0% | |
CCCACTATTGATACCTTGTA+AGG | + | chr2.1:70536054-70536073 | MS.gene002506:intron | 40.0% | |
CGTTGTACTTGTTCGATACA+TGG | - | chr2.1:70534910-70534929 | None:intergenic | 40.0% | |
CTGAAACGCGAGAAAAATCA+AGG | - | chr2.1:70535527-70535546 | None:intergenic | 40.0% | |
CTTTGACTACTTCACTTGCT+AGG | + | chr2.1:70533809-70533828 | MS.gene002506:CDS | 40.0% | |
GAATAGAATATGGGAATCGG+GGG | - | chr2.1:70536762-70536781 | None:intergenic | 40.0% | |
GAGGACGACATGATCATTTA+TGG | - | chr2.1:70535577-70535596 | None:intergenic | 40.0% | |
GATTGCTGTCACGAATTGTT+CGG | - | chr2.1:70533489-70533508 | None:intergenic | 40.0% | |
GCACTTTAGACAAAGTCCTT+GGG | - | chr2.1:70535629-70535648 | None:intergenic | 40.0% | |
GGACTCTAGTGTTAAATCAC+AGG | + | chr2.1:70533689-70533708 | MS.gene002506:CDS | 40.0% | |
GTACGAGAGGATTTCAAATC+TGG | - | chr2.1:70536233-70536252 | None:intergenic | 40.0% | |
GTCCACACAGAACTTTATTC+TGG | - | chr2.1:70534160-70534179 | None:intergenic | 40.0% | |
GTGAAGACGAAAAGCTTTCA+TGG | + | chr2.1:70536918-70536937 | MS.gene002506:CDS | 40.0% | |
GTGCCAACAATTTCTGTGTT+GGG | - | chr2.1:70534186-70534205 | None:intergenic | 40.0% | |
TAGAGTCCATAATTCTGGTG+TGG | - | chr2.1:70533677-70533696 | None:intergenic | 40.0% | |
TAGCCCAACACAGAAATTGT+TGG | + | chr2.1:70534180-70534199 | MS.gene002506:intron | 40.0% | |
TATGGCCATGTATCCTTCAT+AGG | + | chr2.1:70536413-70536432 | MS.gene002506:intron | 40.0% | |
TCCAAGGATCGATTAATCCA+GGG | + | chr2.1:70534094-70534113 | MS.gene002506:intron | 40.0% | |
TCCATTGAAGAATCTAGTGC+GGG | - | chr2.1:70535599-70535618 | None:intergenic | 40.0% | |
TCCTGATGAGTTTAATGGCT+TGG | + | chr2.1:70534789-70534808 | MS.gene002506:CDS | 40.0% | |
TCTCTGGTAAGGAGTTTACT+GGG | + | chr2.1:70535787-70535806 | MS.gene002506:intron | 40.0% | |
TTCAATGGAACTGTTTCCCA+AGG | + | chr2.1:70535610-70535629 | MS.gene002506:intron | 40.0% | |
! | AAGGTTGGTTGAGAGAGAAT+AGG | - | chr2.1:70535508-70535527 | None:intergenic | 40.0% |
! | ACTGAAAATAACTGCCGACT+AGG | + | chr2.1:70535471-70535490 | MS.gene002506:intron | 40.0% |
! | CCCTTACAAGGTATCAATAG+TGG | - | chr2.1:70536058-70536077 | None:intergenic | 40.0% |
! | CTCCTGATTTTCCTTCTGTA+TGG | + | chr2.1:70536395-70536414 | MS.gene002506:intron | 40.0% |
! | GTCCAAACTGATTCTAACAC+TGG | - | chr2.1:70536548-70536567 | None:intergenic | 40.0% |
! | TTAAGCATTTTCGCAGCTGA+AGG | - | chr2.1:70534859-70534878 | None:intergenic | 40.0% |
! | TTGGTTCTTGAATCTGGAAC+TGG | + | chr2.1:70533778-70533797 | MS.gene002506:CDS | 40.0% |
!! | AGGGACGATTTTGAGAGAAT+AGG | + | chr2.1:70534715-70534734 | MS.gene002506:intron | 40.0% |
!! | GATTGGATTGGAAAGCCTTT+TGG | + | chr2.1:70533604-70533623 | MS.gene002506:CDS | 40.0% |
!! | TTCACAAGGGTTCTGAAGTA+TGG | + | chr2.1:70535965-70535984 | MS.gene002506:intron | 40.0% |
!!! | GCGGGCAGTTTTTTTTTCTT+CGG | - | chr2.1:70536707-70536726 | None:intergenic | 40.0% |
!!! | GGGGGATATCTGGTTTTTTT+GGG | - | chr2.1:70536744-70536763 | None:intergenic | 40.0% |
AACTAACAGAACTGCGACGT+GGG | - | chr2.1:70535669-70535688 | None:intergenic | 45.0% | |
AATCTGGCCCCAAACAGAAA+TGG | - | chr2.1:70536217-70536236 | None:intergenic | 45.0% | |
ACACAGAAATTGTTGGCACC+TGG | + | chr2.1:70534187-70534206 | MS.gene002506:intron | 45.0% | |
ACAGAAATTGTTGGCACCTG+GGG | + | chr2.1:70534189-70534208 | MS.gene002506:intron | 45.0% | |
ACGTGCCTATGAAGGATACA+TGG | - | chr2.1:70536421-70536440 | None:intergenic | 45.0% | |
AGCTTTCATGGAGATGACAG+TGG | + | chr2.1:70536930-70536949 | MS.gene002506:CDS | 45.0% | |
AGGATACATGGCCATACAGA+AGG | - | chr2.1:70536409-70536428 | None:intergenic | 45.0% | |
AGGCTCTCTTAACTCCTAGT+CGG | - | chr2.1:70535488-70535507 | None:intergenic | 45.0% | |
ATAAGCTGGACCACTCGTAA+GGG | - | chr2.1:70535886-70535905 | None:intergenic | 45.0% | |
ATTGAAGAATCTAGTGCGGG+AGG | - | chr2.1:70535596-70535615 | None:intergenic | 45.0% | |
CAAGGGACTGAAGGATGTAA+TGG | - | chr2.1:70535832-70535851 | None:intergenic | 45.0% | |
CACAGAAATTGTTGGCACCT+GGG | + | chr2.1:70534188-70534207 | MS.gene002506:intron | 45.0% | |
CAGAAGGATTGAGGAATTGC+TGG | - | chr2.1:70536339-70536358 | None:intergenic | 45.0% | |
CATCTGCTAGGTAACAAACC+AGG | + | chr2.1:70533887-70533906 | MS.gene002506:intron | 45.0% | |
CTACGAGTATGCTCTTCTCT+AGG | - | chr2.1:70534229-70534248 | None:intergenic | 45.0% | |
CTAGCCATGACAGAAGAAGT+AGG | - | chr2.1:70537011-70537030 | None:intergenic | 45.0% | |
CTAGGTAACAAACCAGGAAG+AGG | + | chr2.1:70533893-70533912 | MS.gene002506:intron | 45.0% | |
GAAAGCTGTAACAGTGTCTG+AGG | + | chr2.1:70533540-70533559 | MS.gene002506:CDS | 45.0% | |
GAACACTGTCTTCTCTTGCA+AGG | - | chr2.1:70536963-70536982 | None:intergenic | 45.0% | |
GAACTCCTTACGTGTGACTA+AGG | - | chr2.1:70534531-70534550 | None:intergenic | 45.0% | |
GAATTGCTGGAAACAGTCAG+AGG | - | chr2.1:70536326-70536345 | None:intergenic | 45.0% | |
GATTCAAGAACCAAGCAACC+AGG | - | chr2.1:70533772-70533791 | None:intergenic | 45.0% | |
GCAGCAATCGTACGAAGATT+TGG | - | chr2.1:70535996-70536015 | None:intergenic | 45.0% | |
GCCAAGCCATTAAACTCATC+AGG | - | chr2.1:70534793-70534812 | None:intergenic | 45.0% | |
GGCCATACAGAAGGAAAATC+AGG | - | chr2.1:70536400-70536419 | None:intergenic | 45.0% | |
GGTGCCAACAATTTCTGTGT+TGG | - | chr2.1:70534187-70534206 | None:intergenic | 45.0% | |
GTCCAAGGATCGATTAATCC+AGG | + | chr2.1:70534093-70534112 | MS.gene002506:intron | 45.0% | |
GTTTGGTTGGACAAGTAGAG+TGG | - | chr2.1:70536156-70536175 | None:intergenic | 45.0% | |
TAAGATTGCCATGGAAGGCA+AGG | - | chr2.1:70536081-70536100 | None:intergenic | 45.0% | |
TAGCTCCCACACCAGAATTA+TGG | + | chr2.1:70533668-70533687 | MS.gene002506:CDS | 45.0% | |
TATAAGCTGGACCACTCGTA+AGG | - | chr2.1:70535887-70535906 | None:intergenic | 45.0% | |
TCCCGCACTAGATTCTTCAA+TGG | + | chr2.1:70535595-70535614 | MS.gene002506:intron | 45.0% | |
TCCCTGGATTAATCGATCCT+TGG | - | chr2.1:70534098-70534117 | None:intergenic | 45.0% | |
TCGCAGTTCTGTTAGTTGGA+TGG | + | chr2.1:70535672-70535691 | MS.gene002506:intron | 45.0% | |
TCTCAAACAAAAGGGGACTG+TGG | - | chr2.1:70535934-70535953 | None:intergenic | 45.0% | |
TGTGGAGTTAGGGACATTCA+GGG | + | chr2.1:70534757-70534776 | MS.gene002506:CDS | 45.0% | |
TTGGGCTCTCTAACTCTTAG+CGG | - | chr2.1:70536726-70536745 | None:intergenic | 45.0% | |
TTGTGGAGTTAGGGACATTC+AGG | + | chr2.1:70534756-70534775 | MS.gene002506:CDS | 45.0% | |
TTTGATGGAGAGGATGCGTT+TGG | - | chr2.1:70536173-70536192 | None:intergenic | 45.0% | |
! | CATTTTCGCAGCTGAAGGAA+TGG | - | chr2.1:70534854-70534873 | None:intergenic | 45.0% |
! | CCTGCTTCACAGGTACTTTT+AGG | + | chr2.1:70534950-70534969 | MS.gene002506:intron | 45.0% |
! | CTAGAGAAGAGCATACTCGT+AGG | + | chr2.1:70534227-70534246 | MS.gene002506:intron | 45.0% |
! | CTTGAATCTGGAACTGGTAG+TGG | + | chr2.1:70533784-70533803 | MS.gene002506:CDS | 45.0% |
! | GGTTGCTTGGTTCTTGAATC+TGG | + | chr2.1:70533772-70533791 | MS.gene002506:CDS | 45.0% |
! | TAGCGGCTTGAATTTTCTCG+TGG | + | chr2.1:70536099-70536118 | MS.gene002506:intron | 45.0% |
! | TTTTGGATCTGCCTCAACCT+TGG | + | chr2.1:70534824-70534843 | MS.gene002506:CDS | 45.0% |
!! | CAAGGGTTCTGAAGTATGGA+CGG | + | chr2.1:70535969-70535988 | MS.gene002506:intron | 45.0% |
!! | CCTAAAAGTACCTGTGAAGC+AGG | - | chr2.1:70534953-70534972 | None:intergenic | 45.0% |
!! | GTCCCCTTTTGTTTGAGACT+TGG | + | chr2.1:70535936-70535955 | MS.gene002506:intron | 45.0% |
!!! | CGGGGGATATCTGGTTTTTT+TGG | - | chr2.1:70536745-70536764 | None:intergenic | 45.0% |
AACAAAGGGCAGCATCTGCT+AGG | + | chr2.1:70533875-70533894 | MS.gene002506:CDS | 50.0% | |
AGACCTTGTGATGAGGCTAG+AGG | + | chr2.1:70537029-70537048 | MS.gene002506:CDS | 50.0% | |
AGTTAGGGACATTCAGGGTG+AGG | + | chr2.1:70534762-70534781 | MS.gene002506:CDS | 50.0% | |
ATGGAGAGGATGCGTTTGGT+TGG | - | chr2.1:70536169-70536188 | None:intergenic | 50.0% | |
CAAACAAAAGGGGACTGTGG+AGG | - | chr2.1:70535931-70535950 | None:intergenic | 50.0% | |
CAACTAACAGAACTGCGACG+TGG | - | chr2.1:70535670-70535689 | None:intergenic | 50.0% | |
CAATTGGGTCCGACTACTAG+CGG | - | chr2.1:70534134-70534153 | None:intergenic | 50.0% | |
CACGTCGCAGTTCTGTTAGT+TGG | + | chr2.1:70535668-70535687 | MS.gene002506:intron | 50.0% | |
CAGATGCTGCCCTTTGTTCA+TGG | - | chr2.1:70533873-70533892 | None:intergenic | 50.0% | |
CATGGCTAGACCTTGTGATG+AGG | + | chr2.1:70537022-70537041 | MS.gene002506:CDS | 50.0% | |
CTACACGGTGTAGTCAACAG+TGG | - | chr2.1:70534341-70534360 | None:intergenic | 50.0% | |
GCCTTCCATGGCAATCTTAG+CGG | + | chr2.1:70536082-70536101 | MS.gene002506:intron | 50.0% | |
GCTGAAGGAATGGCTAACCA+AGG | - | chr2.1:70534844-70534863 | None:intergenic | 50.0% | |
GGAATGGCTAACCAAGGTTG+AGG | - | chr2.1:70534838-70534857 | None:intergenic | 50.0% | |
GGAGATTGTTCCTGGTTGCT+TGG | + | chr2.1:70533759-70533778 | MS.gene002506:CDS | 50.0% | |
GGAGTTGCGACAACTTCTAG+AGG | - | chr2.1:70536379-70536398 | None:intergenic | 50.0% | |
GGGACTGAAGGATGTAATGG+AGG | - | chr2.1:70535829-70535848 | None:intergenic | 50.0% | |
GTTAGGGACATTCAGGGTGA+GGG | + | chr2.1:70534763-70534782 | MS.gene002506:CDS | 50.0% | |
TATGGGAATCGGGGGATATC+TGG | - | chr2.1:70536754-70536773 | None:intergenic | 50.0% | |
TCAAGCCGCTAAGATTGCCA+TGG | - | chr2.1:70536090-70536109 | None:intergenic | 50.0% | |
TGACCTCTAGCCTCATCACA+AGG | - | chr2.1:70537035-70537054 | None:intergenic | 50.0% | |
TGGGCATAGTCCATCATCTC+TGG | + | chr2.1:70535771-70535790 | MS.gene002506:intron | 50.0% | |
TGGGCTCTCTAACTCTTAGC+GGG | - | chr2.1:70536725-70536744 | None:intergenic | 50.0% | |
AAGCCAACTCCTAGGGCCAT+GGG | + | chr2.1:70534268-70534287 | MS.gene002506:intron | 55.0% | |
ACACCACCAAGCCAACTCCT+AGG | + | chr2.1:70534260-70534279 | MS.gene002506:intron | 55.0% | |
CACCACCAAGCCAACTCCTA+GGG | + | chr2.1:70534261-70534280 | MS.gene002506:intron | 55.0% | |
CTACGCTGTAGCGTAACCCA+TGG | - | chr2.1:70534287-70534306 | None:intergenic | 55.0% | |
GATGAGGCTAGAGGTCACAC+AGG | + | chr2.1:70537038-70537057 | MS.gene002506:CDS | 55.0% | |
GCACTTCAGTCCTGCTTCAC+AGG | + | chr2.1:70534940-70534959 | MS.gene002506:CDS | 55.0% | |
GCCGCTAAGATTGCCATGGA+AGG | - | chr2.1:70536086-70536105 | None:intergenic | 55.0% | |
GCTGGAAACAGTCAGAGGCA+TGG | - | chr2.1:70536321-70536340 | None:intergenic | 55.0% | |
GGTCTCAGTTTCGAATCCCC+AGG | - | chr2.1:70534208-70534227 | None:intergenic | 55.0% | |
TAACCCATGGCCCTAGGAGT+TGG | - | chr2.1:70534274-70534293 | None:intergenic | 55.0% | |
TCCCACCATCCGCTAGTAGT+CGG | + | chr2.1:70534122-70534141 | MS.gene002506:intron | 55.0% | |
TCTCGTTCAGCCCTTACGAG+TGG | + | chr2.1:70535873-70535892 | MS.gene002506:intron | 55.0% | |
TGGAAGGCAAGGCCCTTACA+AGG | - | chr2.1:70536070-70536089 | None:intergenic | 55.0% | |
TGTAAGGGCCTTGCCTTCCA+TGG | + | chr2.1:70536070-70536089 | MS.gene002506:intron | 55.0% | |
! | AGATGGCAAGAGCGTACGAG+AGG | - | chr2.1:70536246-70536265 | None:intergenic | 55.0% |
! | TCCGACTACTAGCGGATGGT+GGG | - | chr2.1:70534126-70534145 | None:intergenic | 55.0% |
!! | AGGAGTTGGCTTGGTGGTGT+AGG | - | chr2.1:70534260-70534279 | None:intergenic | 55.0% |
!! | CTACTAGCGGATGGTGGGAT+TGG | - | chr2.1:70534121-70534140 | None:intergenic | 55.0% |
CAAGCCAACTCCTAGGGCCA+TGG | + | chr2.1:70534267-70534286 | MS.gene002506:intron | 60.0% | |
CATGGCCCTAGGAGTTGGCT+TGG | - | chr2.1:70534269-70534288 | None:intergenic | 60.0% | |
GCTAGGGCAGTTGCGCCAAA+CGG | + | chr2.1:70533826-70533845 | MS.gene002506:CDS | 60.0% | |
GTAGCGTAACCCATGGCCCT+AGG | - | chr2.1:70534280-70534299 | None:intergenic | 60.0% | |
TGGGTCCGACTACTAGCGGA+TGG | - | chr2.1:70534130-70534149 | None:intergenic | 60.0% | |
! | GTCCGACTACTAGCGGATGG+TGG | - | chr2.1:70534127-70534146 | None:intergenic | 60.0% |
!! | CGGATGGTGGGATTGGTCCC+TGG | - | chr2.1:70534114-70534133 | None:intergenic | 65.0% |
!! | GGCCCTAGGAGTTGGCTTGG+TGG | - | chr2.1:70534266-70534285 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 70533448 | 70537097 | 70533448 | ID=MS.gene002506 |
chr2.1 | mRNA | 70533448 | 70537097 | 70533448 | ID=MS.gene002506.t1;Parent=MS.gene002506 |
chr2.1 | exon | 70533448 | 70533896 | 70533448 | ID=MS.gene002506.t1.exon1;Parent=MS.gene002506.t1 |
chr2.1 | CDS | 70533448 | 70533896 | 70533448 | ID=cds.MS.gene002506.t1;Parent=MS.gene002506.t1 |
chr2.1 | exon | 70534717 | 70534961 | 70534717 | ID=MS.gene002506.t1.exon2;Parent=MS.gene002506.t1 |
chr2.1 | CDS | 70534717 | 70534961 | 70534717 | ID=cds.MS.gene002506.t1;Parent=MS.gene002506.t1 |
chr2.1 | exon | 70536871 | 70537097 | 70536871 | ID=MS.gene002506.t1.exon3;Parent=MS.gene002506.t1 |
chr2.1 | CDS | 70536871 | 70537097 | 70536871 | ID=cds.MS.gene002506.t1;Parent=MS.gene002506.t1 |
Gene Sequence |
Protein sequence |