Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64211.t1 | XP_003589467.1 | 97.4 | 457 | 12 | 0 | 1 | 457 | 1 | 457 | 1.80E-250 | 874.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64211.t1 | Q54UB1 | 32.7 | 444 | 263 | 6 | 14 | 454 | 37 | 447 | 3.0e-57 | 224.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64211.t1 | G7I755 | 97.4 | 457 | 12 | 0 | 1 | 457 | 1 | 457 | 1.3e-250 | 874.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene002506 | MS.gene64211 | PPI |
| MS.gene64211 | MS.gene99758 | PPI |
| MS.gene01479 | MS.gene64211 | PPI |
| MS.gene64211 | MS.gene30726 | PPI |
| MS.gene64211 | MS.gene059414 | PPI |
| MS.gene054179 | MS.gene64211 | PPI |
| MS.gene77102 | MS.gene64211 | PPI |
| MS.gene64211 | MS.gene066758 | PPI |
| MS.gene047362 | MS.gene64211 | PPI |
| MS.gene004176 | MS.gene64211 | PPI |
| MS.gene64211 | MS.gene054180 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64211.t1 | MTR_1g024920 | 97.374 | 457 | 12 | 0 | 1 | 457 | 1 | 457 | 0.0 | 920 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene64211.t1 | AT2G45730 | 62.084 | 451 | 142 | 5 | 10 | 457 | 22 | 446 | 0.0 | 517 |
Find 97 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGCATCCATTGAAAAT+TGG | 0.166239 | 1.3:+1217327 | MS.gene64211:CDS |
| ATGGTTGGTGGCCTTCTTAC+TGG | 0.198600 | 1.3:+1218848 | MS.gene64211:CDS |
| TCCAGCCTTTATAGCTTTGC+AGG | 0.222527 | 1.3:-1220069 | None:intergenic |
| ATTGACTCTTGGAAGGAAAA+TGG | 0.240508 | 1.3:+1220113 | MS.gene64211:CDS |
| CTTATCAAATGTTGCGCTAT+TGG | 0.243677 | 1.3:-1216303 | None:intergenic |
| ATCTCTCATTCGTCAGAAAA+TGG | 0.252753 | 1.3:+1219981 | MS.gene64211:CDS |
| AAGTGCAATTTACATTTAAT+TGG | 0.266218 | 1.3:-1219860 | None:intergenic |
| TTTGTATGCAATTCATATCT+TGG | 0.278999 | 1.3:+1219161 | MS.gene64211:CDS |
| CAATCTACAGCTTGAGAAAA+TGG | 0.282349 | 1.3:+1220846 | MS.gene64211:CDS |
| GAAAATGGAATTTCTGATCT+TGG | 0.300851 | 1.3:+1219996 | MS.gene64211:CDS |
| TATCTTCACCAGTGAGGCTT+TGG | 0.305154 | 1.3:-1215960 | None:intergenic |
| ACACTGCCGTCATCATGTTT+TGG | 0.317670 | 1.3:-1219831 | None:intergenic |
| GGACGTCTTATAAGTACTTT+TGG | 0.334717 | 1.3:-1216800 | None:intergenic |
| TGACATTCTCGTTGTTGATA+TGG | 0.336210 | 1.3:+1218829 | MS.gene64211:CDS |
| AAGAGCCTGCAAAGCTATAA+AGG | 0.342065 | 1.3:+1220064 | MS.gene64211:CDS |
| CATTAGCCATTGAAAGTAGA+AGG | 0.344540 | 1.3:-1218793 | None:intergenic |
| TGCATGCAAATGAGTGCATT+TGG | 0.351990 | 1.3:+1221129 | MS.gene64211:CDS |
| CCAAAATTACCTGAAGATAT+TGG | 0.358571 | 1.3:-1220328 | None:intergenic |
| GCATGCAAATGAGTGCATTT+GGG | 0.375049 | 1.3:+1221130 | MS.gene64211:CDS |
| AGAAGCATCCATTGAAAATT+GGG | 0.379799 | 1.3:+1217328 | MS.gene64211:CDS |
| AGTCTGGTGCAGCAATAATT+AGG | 0.382222 | 1.3:-1220235 | None:intergenic |
| CTGCACCAGACTTGGATACT+TGG | 0.382708 | 1.3:+1220246 | MS.gene64211:CDS |
| CTCAAGAAATCATTGACTCT+TGG | 0.389186 | 1.3:+1220102 | MS.gene64211:CDS |
| ATCTTCACCAGTGAGGCTTT+GGG | 0.389493 | 1.3:-1215959 | None:intergenic |
| GGTGCAGTGGCAGAGCGTTT+AGG | 0.395962 | 1.3:+1218869 | MS.gene64211:CDS |
| TATTTATCACCAATATCTTC+AGG | 0.407320 | 1.3:+1220319 | MS.gene64211:CDS |
| ATTGTCCCTTCTACTTTCAA+TGG | 0.417484 | 1.3:+1218787 | MS.gene64211:CDS |
| AAAGGTCACCTTCGAGCAAC+AGG | 0.421884 | 1.3:-1216821 | None:intergenic |
| TATTGGTGATAAATAGCAAA+TGG | 0.425158 | 1.3:-1220311 | None:intergenic |
| CCATTGATCGGTTGTCCATT+CGG | 0.433164 | 1.3:+1213062 | MS.gene64211:CDS |
| TTGTGACAACAAGTCAGAAA+TGG | 0.435540 | 1.3:-1219787 | None:intergenic |
| TTATTTATTGCAGAATTGTA+AGG | 0.438615 | 1.3:+1219760 | MS.gene64211:intron |
| ATTGGTGATAAATAGCAAAT+GGG | 0.443406 | 1.3:-1220310 | None:intergenic |
| GCCTGCAAAGCTATAAAGGC+TGG | 0.451952 | 1.3:+1220068 | MS.gene64211:CDS |
| TATCATACCTTTGGGTTGAA+AGG | 0.455862 | 1.3:-1213135 | None:intergenic |
| AATTATTGCTGCACCAGACT+TGG | 0.465888 | 1.3:+1220238 | MS.gene64211:CDS |
| ATCATACCTTTGGGTTGAAA+GGG | 0.468984 | 1.3:-1213134 | None:intergenic |
| CAACTTGACACTTCTTCCGA+TGG | 0.475284 | 1.3:+1213095 | MS.gene64211:CDS |
| TATATGCAGGCAGGGTGCTA+AGG | 0.486648 | 1.3:+1216253 | MS.gene64211:intron |
| CTCGTTGTTGATATGGTTGG+TGG | 0.492274 | 1.3:+1218836 | MS.gene64211:CDS |
| ATGCATGGGTGAGTTCTTGA+TGG | 0.501143 | 1.3:-1221111 | None:intergenic |
| CCGGTGAGTTGAGGGACAAC+CGG | 0.506639 | 1.3:+1215914 | MS.gene64211:CDS |
| AATACTGCCCAAAGCCTCAC+TGG | 0.508455 | 1.3:+1215952 | MS.gene64211:CDS |
| CTGCCACTGCACCAGTAAGA+AGG | 0.508496 | 1.3:-1218859 | None:intergenic |
| TCAACTCACCGGTGAGTTGA+GGG | 0.508876 | 1.3:+1215906 | MS.gene64211:CDS |
| AATGTCCAAGTATCCAAGTC+TGG | 0.512151 | 1.3:-1220251 | None:intergenic |
| TGCTCACTGCAGCCATTGAT+CGG | 0.514051 | 1.3:+1213050 | MS.gene64211:CDS |
| AATGCACTCATTTGCATGCA+TGG | 0.517471 | 1.3:-1221126 | None:intergenic |
| TAAGAAAACTTCATTCTCAC+AGG | 0.523266 | 1.3:+1216322 | MS.gene64211:CDS |
| CTATCTCCCTTTCAACCCAA+AGG | 0.524235 | 1.3:+1213128 | MS.gene64211:CDS |
| TCTTGGACAGGCACCATCCA+TGG | 0.531216 | 1.3:+1219178 | MS.gene64211:CDS |
| GTCAACTCACCGGTGAGTTG+AGG | 0.531835 | 1.3:+1215905 | MS.gene64211:CDS |
| ATGCAATTCATATCTTGGAC+AGG | 0.532059 | 1.3:+1219166 | MS.gene64211:CDS |
| ATTCTCGTTGTTGATATGGT+TGG | 0.536995 | 1.3:+1218833 | MS.gene64211:CDS |
| CTCAGTTATTTGCAATCCGA+TGG | 0.541352 | 1.3:-1220869 | None:intergenic |
| AACACTGAAGACATAAAAGA+TGG | 0.541808 | 1.3:+1215856 | MS.gene64211:CDS |
| GCTTTGCAGGCTCTTAGAGC+AGG | 0.543207 | 1.3:-1220056 | None:intergenic |
| CCGAATGGACAACCGATCAA+TGG | 0.550414 | 1.3:-1213062 | None:intergenic |
| GGGGCAGAGTTTGATAAAAG+TGG | 0.553292 | 1.3:-1220290 | None:intergenic |
| AAATATCCTCACAATATCCA+TGG | 0.553785 | 1.3:-1219195 | None:intergenic |
| GATTGCAAATAACTGAGCCT+TGG | 0.554849 | 1.3:+1220875 | MS.gene64211:CDS |
| AGAAATCATTGACTCTTGGA+AGG | 0.556926 | 1.3:+1220106 | MS.gene64211:CDS |
| ATATGCAGGCAGGGTGCTAA+GGG | 0.562125 | 1.3:+1216254 | MS.gene64211:intron |
| AAGAAAAGAGTGACATGGGA+AGG | 0.574636 | 1.3:+1212823 | MS.gene64211:CDS |
| GGCTCTTAGAGCAGGAAATG+TGG | 0.580777 | 1.3:-1220048 | None:intergenic |
| AGATAGAAAAGAAGCGCCAT+CGG | 0.581537 | 1.3:-1213111 | None:intergenic |
| CCGGTTGTCCCTCAACTCAC+CGG | 0.583321 | 1.3:-1215914 | None:intergenic |
| ACCTGGTATTCGCGTAGCCA+AGG | 0.585659 | 1.3:-1220892 | None:intergenic |
| GCCTTGGCTACGCGAATACC+AGG | 0.594448 | 1.3:+1220891 | MS.gene64211:CDS |
| TGGCCTTCTTACTGGTGCAG+TGG | 0.596291 | 1.3:+1218856 | MS.gene64211:CDS |
| ATGCACTCATTTGCATGCAT+GGG | 0.597902 | 1.3:-1221125 | None:intergenic |
| TATTATTGTCGATCAACGAC+CGG | 0.599829 | 1.3:-1215933 | None:intergenic |
| ATCCTCACAATATCCATGGA+TGG | 0.603371 | 1.3:-1219191 | None:intergenic |
| TCACAAGACGGTCAACTCAC+CGG | 0.606124 | 1.3:+1215895 | MS.gene64211:CDS |
| CAATAAGAAAAGAGTGACAT+GGG | 0.607679 | 1.3:+1212819 | MS.gene64211:CDS |
| CATGCAAATGAGTGCATTTG+GGG | 0.609044 | 1.3:+1221131 | MS.gene64211:CDS |
| ATTAGCCATTGAAAGTAGAA+GGG | 0.613664 | 1.3:-1218792 | None:intergenic |
| CTGATTCAGATTCTTGCGTG+TGG | 0.618711 | 1.3:+1218760 | MS.gene64211:intron |
| GAGTTGACCGTCTTGTGACT+CGG | 0.623293 | 1.3:-1215890 | None:intergenic |
| CAAAATCCAAAACATGATGA+CGG | 0.624523 | 1.3:+1219825 | MS.gene64211:CDS |
| CACCATCCATGGATATTGTG+AGG | 0.625248 | 1.3:+1219189 | MS.gene64211:CDS |
| AATGTGTGCATCAGTCAGCA+TGG | 0.631729 | 1.3:+1219953 | MS.gene64211:CDS |
| GCAGTGGCAGAGCGTTTAGG+AGG | 0.634206 | 1.3:+1218872 | MS.gene64211:CDS |
| ACAATAAGAAAAGAGTGACA+TGG | 0.635345 | 1.3:+1212818 | MS.gene64211:CDS |
| CAGCTTGAGAAAATGGCCAT+CGG | 0.636892 | 1.3:+1220853 | MS.gene64211:CDS |
| AAGATATAGAAGACATGCGA+AGG | 0.637003 | 1.3:+1215977 | MS.gene64211:CDS |
| TTCTTAGCCGAGTCACAAGA+CGG | 0.647000 | 1.3:+1215883 | MS.gene64211:CDS |
| TAAGACGTCCTGTTGCTCGA+AGG | 0.647595 | 1.3:+1216813 | MS.gene64211:CDS |
| TTGGTGATAAATAGCAAATG+GGG | 0.648921 | 1.3:-1220309 | None:intergenic |
| TAAGCGACGAAATCTGCAAG+AGG | 0.655897 | 1.3:+1219222 | MS.gene64211:CDS |
| CTTCTATATCTTCACCAGTG+AGG | 0.664706 | 1.3:-1215966 | None:intergenic |
| AAAACATGATGACGGCAGTG+TGG | 0.681492 | 1.3:+1219833 | MS.gene64211:CDS |
| TTGTGCATGCAAGTTGCTAG+AGG | 0.695261 | 1.3:-1220826 | None:intergenic |
| AGTTTGATAAAAGTGGCAAG+AGG | 0.695485 | 1.3:-1220283 | None:intergenic |
| GTCTTGCTTGATATCAACGA+CGG | 0.708481 | 1.3:+1212853 | MS.gene64211:CDS |
| GTGTGCATCAGTCAGCATGG+AGG | 0.745962 | 1.3:+1219956 | MS.gene64211:CDS |
| ATGCAAATGAGTGCATTTGG+GGG | 0.767185 | 1.3:+1221132 | MS.gene64211:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 1212802 | 1221191 | 1212802 | ID=MS.gene64211 |
| chr1.3 | mRNA | 1212802 | 1221191 | 1212802 | ID=MS.gene64211.t1;Parent=MS.gene64211 |
| chr1.3 | exon | 1212802 | 1212911 | 1212802 | ID=MS.gene64211.t1.exon1;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1212802 | 1212911 | 1212802 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1213025 | 1213149 | 1213025 | ID=MS.gene64211.t1.exon2;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1213025 | 1213149 | 1213025 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1215845 | 1215998 | 1215845 | ID=MS.gene64211.t1.exon3;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1215845 | 1215998 | 1215845 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1216262 | 1216343 | 1216262 | ID=MS.gene64211.t1.exon4;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1216262 | 1216343 | 1216262 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1216764 | 1216834 | 1216764 | ID=MS.gene64211.t1.exon5;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1216764 | 1216834 | 1216764 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1217308 | 1217349 | 1217308 | ID=MS.gene64211.t1.exon6;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1217308 | 1217349 | 1217308 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1218769 | 1218893 | 1218769 | ID=MS.gene64211.t1.exon7;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1218769 | 1218893 | 1218769 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1219153 | 1219243 | 1219153 | ID=MS.gene64211.t1.exon8;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1219153 | 1219243 | 1219153 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1219773 | 1219869 | 1219773 | ID=MS.gene64211.t1.exon9;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1219773 | 1219869 | 1219773 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1219948 | 1220144 | 1219948 | ID=MS.gene64211.t1.exon10;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1219948 | 1220144 | 1219948 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1220235 | 1220340 | 1220235 | ID=MS.gene64211.t1.exon11;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1220235 | 1220340 | 1220235 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1220826 | 1220912 | 1220826 | ID=MS.gene64211.t1.exon12;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1220826 | 1220912 | 1220826 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| chr1.3 | exon | 1221105 | 1221191 | 1221105 | ID=MS.gene64211.t1.exon13;Parent=MS.gene64211.t1 |
| chr1.3 | CDS | 1221105 | 1221191 | 1221105 | ID=cds.MS.gene64211.t1;Parent=MS.gene64211.t1 |
| Gene Sequence |
| Protein sequence |