Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27063.t1 | XP_003589467.1 | 97.6 | 379 | 9 | 0 | 66 | 444 | 79 | 457 | 7.90E-203 | 716.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27063.t1 | Q54UB1 | 34.2 | 404 | 241 | 7 | 42 | 441 | 65 | 447 | 5.0e-49 | 196.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27063.t1 | G7I755 | 97.6 | 379 | 9 | 0 | 66 | 444 | 79 | 457 | 5.7e-203 | 716.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047362 | MS.gene27063 | PPI |
| MS.gene27063 | MS.gene054180 | PPI |
| MS.gene004176 | MS.gene27063 | PPI |
| MS.gene27063 | MS.gene002506 | PPI |
| MS.gene27063 | MS.gene99758 | PPI |
| MS.gene27063 | MS.gene30726 | PPI |
| MS.gene27063 | MS.gene059414 | PPI |
| MS.gene01479 | MS.gene27063 | PPI |
| MS.gene054179 | MS.gene27063 | PPI |
| MS.gene77102 | MS.gene27063 | PPI |
| MS.gene27063 | MS.gene066758 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27063.t1 | MTR_1g024920 | 97.625 | 379 | 9 | 0 | 66 | 444 | 79 | 457 | 0.0 | 765 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27063.t1 | AT2G45730 | 59.553 | 403 | 143 | 5 | 46 | 444 | 60 | 446 | 2.97e-149 | 432 |
Find 93 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGCATCCATTGAAAAT+TGG | 0.166239 | 1.1:+731728 | MS.gene27063:CDS |
| ATGGTTGGTGGCCTTCTTAC+TGG | 0.198600 | 1.1:+733234 | MS.gene27063:CDS |
| TCCAGCCTTTATAGCTTTGC+AGG | 0.222527 | 1.1:-735314 | None:intergenic |
| ATTGACTCTTGGAAGGAAAA+TGG | 0.240508 | 1.1:+735358 | MS.gene27063:CDS |
| CTTATCAAATGTTGCGCTAT+TGG | 0.243677 | 1.1:-730700 | None:intergenic |
| ATCTCTCATTCGTCAGAAAA+TGG | 0.252753 | 1.1:+735226 | MS.gene27063:CDS |
| AAGTGCAATTTACATTTAAT+TGG | 0.266218 | 1.1:-735105 | None:intergenic |
| TTTGTATGCAATTCATATCT+TGG | 0.278999 | 1.1:+734405 | MS.gene27063:CDS |
| CAATCTACAGCTTGAGAAAA+TGG | 0.282349 | 1.1:+736091 | MS.gene27063:CDS |
| ACACTGCCGTCGTCATGTTT+TGG | 0.289806 | 1.1:-735076 | None:intergenic |
| GAAAATGGAATTTCTGATCT+TGG | 0.300851 | 1.1:+735241 | MS.gene27063:CDS |
| TATCTTCACCAGTGAGGCTT+TGG | 0.305154 | 1.1:-730335 | None:intergenic |
| TGACATTCTCGTTGTTGATA+TGG | 0.336210 | 1.1:+733215 | MS.gene27063:CDS |
| AAGAGCCTGCAAAGCTATAA+AGG | 0.342065 | 1.1:+735309 | MS.gene27063:CDS |
| GGACGTCTTATGAGTACTTT+TGG | 0.343888 | 1.1:-731198 | None:intergenic |
| CATTAGCCATTGAAAGTAGA+AGG | 0.344540 | 1.1:-733179 | None:intergenic |
| TGCATGCAAATGAGTGCATT+TGG | 0.351990 | 1.1:+736374 | MS.gene27063:CDS |
| TTGATAAGCTTTGAGCGTTC+TGG | 0.356618 | 1.1:+729104 | MS.gene27063:CDS |
| CCAAAATTACCTGAAGATAT+TGG | 0.358571 | 1.1:-735573 | None:intergenic |
| TCCATACTCCATGGCGTCTT+CGG | 0.367629 | 1.1:-728024 | None:intergenic |
| GCATGCAAATGAGTGCATTT+GGG | 0.375049 | 1.1:+736375 | MS.gene27063:CDS |
| AGAAGCATCCATTGAAAATT+GGG | 0.379799 | 1.1:+731729 | MS.gene27063:CDS |
| AGTCTGGTGCAGCAATAATT+AGG | 0.382222 | 1.1:-735480 | None:intergenic |
| CTGCACCAGACTTGGATACT+TGG | 0.382708 | 1.1:+735491 | MS.gene27063:CDS |
| CTCAAGAAATCATTGACTCT+TGG | 0.389186 | 1.1:+735347 | MS.gene27063:CDS |
| ATCTTCACCAGTGAGGCTTT+GGG | 0.389493 | 1.1:-730334 | None:intergenic |
| GGTGCAGTGGCAGAGCGTTT+AGG | 0.395962 | 1.1:+733255 | MS.gene27063:CDS |
| TATTTATCACCAATATCTTC+AGG | 0.407320 | 1.1:+735564 | MS.gene27063:CDS |
| CGTCAGACCGGAAGGATTCA+TGG | 0.409384 | 1.1:+727995 | MS.gene27063:CDS |
| ATTGTCCCTTCTACTTTCAA+TGG | 0.417484 | 1.1:+733173 | MS.gene27063:CDS |
| AAAGGTCACCTTCGAGCAAC+AGG | 0.421884 | 1.1:-731219 | None:intergenic |
| TATTGGTGATAAATAGCAAA+TGG | 0.425158 | 1.1:-735556 | None:intergenic |
| TTGTGACAACAAGTCAGAAA+TGG | 0.435540 | 1.1:-735032 | None:intergenic |
| TTATTTATTGCAGAATTGTA+AGG | 0.438615 | 1.1:+735005 | MS.gene27063:intron |
| ATTGGTGATAAATAGCAAAT+GGG | 0.443406 | 1.1:-735555 | None:intergenic |
| GCCTGCAAAGCTATAAAGGC+TGG | 0.451952 | 1.1:+735313 | MS.gene27063:CDS |
| TCAAAAGACAGTCAACTTAC+CGG | 0.453483 | 1.1:+730270 | MS.gene27063:CDS |
| CTCCATCTTCCAAACTGAAA+AGG | 0.456813 | 1.1:-729162 | None:intergenic |
| AATTATTGCTGCACCAGACT+TGG | 0.465888 | 1.1:+735483 | MS.gene27063:CDS |
| CTCGTTGTTGATATGGTTGG+TGG | 0.492274 | 1.1:+733222 | MS.gene27063:CDS |
| TATATGCAGGCAGGGTGCTA+AGG | 0.496315 | 1.1:+730650 | MS.gene27063:intron |
| CGCTAGAGCTTGCGTCAGAC+CGG | 0.496822 | 1.1:+727983 | MS.gene27063:CDS |
| ATGCATGGGTGAGTTCTTGA+TGG | 0.501143 | 1.1:-736356 | None:intergenic |
| TCAACTTACCGGTGAGTTGA+GGG | 0.503070 | 1.1:+730281 | MS.gene27063:CDS |
| AATACTGCCCAAAGCCTCAC+TGG | 0.508455 | 1.1:+730327 | MS.gene27063:CDS |
| CTGCCACTGCACCAGTAAGA+AGG | 0.508496 | 1.1:-733245 | None:intergenic |
| CCGGTGAGTTGAGGGACAAC+CGG | 0.511377 | 1.1:+730289 | MS.gene27063:CDS |
| AATGTCCAAGTATCCAAGTC+TGG | 0.512151 | 1.1:-735496 | None:intergenic |
| AATGCACTCATTTGCATGCA+TGG | 0.517471 | 1.1:-736371 | None:intergenic |
| TTTGGATCACAGTCTGGCGA+TGG | 0.520170 | 1.1:+729076 | MS.gene27063:intron |
| TAAGAAAACTTCATTCTCAC+AGG | 0.523266 | 1.1:+730719 | MS.gene27063:CDS |
| GTCAACTTACCGGTGAGTTG+AGG | 0.524399 | 1.1:+730280 | MS.gene27063:CDS |
| TCTTGGACAGGCACCATCCA+TGG | 0.531216 | 1.1:+734422 | MS.gene27063:CDS |
| ATGCAATTCATATCTTGGAC+AGG | 0.532059 | 1.1:+734410 | MS.gene27063:CDS |
| ATTCTCGTTGTTGATATGGT+TGG | 0.536995 | 1.1:+733219 | MS.gene27063:CDS |
| CTCAGTTATTTGCAATCCGA+TGG | 0.541352 | 1.1:-736114 | None:intergenic |
| AACACTGAAGACATAAAAGA+TGG | 0.541808 | 1.1:+730231 | MS.gene27063:CDS |
| GCTTTGCAGGCTCTTAGAGC+AGG | 0.543207 | 1.1:-735301 | None:intergenic |
| TCAGTTTGGAAGATGGAGAT+CGG | 0.544718 | 1.1:+729167 | MS.gene27063:CDS |
| GGGGCAGAGTTTGATAAAAG+TGG | 0.553292 | 1.1:-735535 | None:intergenic |
| AAATATCCTCACAATATCCA+TGG | 0.553785 | 1.1:-734439 | None:intergenic |
| GATTGCAAATAACTGAGCCT+TGG | 0.554849 | 1.1:+736120 | MS.gene27063:CDS |
| AGAAATCATTGACTCTTGGA+AGG | 0.556926 | 1.1:+735351 | MS.gene27063:CDS |
| CTCTAGCGAGTTTACTCGCG+AGG | 0.572749 | 1.1:-727968 | None:intergenic |
| GGCTCTTAGAGCAGGAAATG+TGG | 0.580777 | 1.1:-735293 | None:intergenic |
| ATATGCAGGCAGGGTGCTAA+GGG | 0.583496 | 1.1:+730651 | MS.gene27063:intron |
| ACCTGGTATTCGCGTAGCCA+AGG | 0.585659 | 1.1:-736137 | None:intergenic |
| AAGATGGAGATCGGCGTCGA+CGG | 0.591577 | 1.1:+729176 | MS.gene27063:CDS |
| CCGGTTGTCCCTCAACTCAC+CGG | 0.592179 | 1.1:-730289 | None:intergenic |
| AGAGCTTGCGTCAGACCGGA+AGG | 0.594429 | 1.1:+727987 | MS.gene27063:CDS |
| GCCTTGGCTACGCGAATACC+AGG | 0.594448 | 1.1:+736136 | MS.gene27063:CDS |
| TGGCCTTCTTACTGGTGCAG+TGG | 0.596291 | 1.1:+733242 | MS.gene27063:CDS |
| ATGCACTCATTTGCATGCAT+GGG | 0.597902 | 1.1:-736370 | None:intergenic |
| TATTATTGTCGATCAACGAC+CGG | 0.599829 | 1.1:-730308 | None:intergenic |
| ATCCTCACAATATCCATGGA+TGG | 0.603371 | 1.1:-734435 | None:intergenic |
| CATGCAAATGAGTGCATTTG+GGG | 0.609044 | 1.1:+736376 | MS.gene27063:CDS |
| ATTAGCCATTGAAAGTAGAA+GGG | 0.613664 | 1.1:-733178 | None:intergenic |
| CTGATTCAGATTCTTGCGTG+TGG | 0.618711 | 1.1:+733146 | MS.gene27063:intron |
| CACCATCCATGGATATTGTG+AGG | 0.625248 | 1.1:+734433 | MS.gene27063:CDS |
| AATGTGTGCATCAGTCAGCA+TGG | 0.631729 | 1.1:+735198 | MS.gene27063:CDS |
| GCAGTGGCAGAGCGTTTAGG+AGG | 0.634206 | 1.1:+733258 | MS.gene27063:CDS |
| CAGCTTGAGAAAATGGCCAT+CGG | 0.636892 | 1.1:+736098 | MS.gene27063:CDS |
| AAGATATAGAAGACATGCGA+AGG | 0.637003 | 1.1:+730352 | MS.gene27063:CDS |
| TAAGACGTCCTGTTGCTCGA+AGG | 0.647595 | 1.1:+731211 | MS.gene27063:CDS |
| TTGGTGATAAATAGCAAATG+GGG | 0.648921 | 1.1:-735554 | None:intergenic |
| TAAGCGACGAAATCTGCAAG+AGG | 0.655897 | 1.1:+734466 | MS.gene27063:CDS |
| CTTCTATATCTTCACCAGTG+AGG | 0.664706 | 1.1:-730341 | None:intergenic |
| AAAACATGACGACGGCAGTG+TGG | 0.668485 | 1.1:+735078 | MS.gene27063:CDS |
| CAAAATCCAAAACATGACGA+CGG | 0.688465 | 1.1:+735070 | MS.gene27063:CDS |
| TTGTGCATGCAAGTTGCTAG+AGG | 0.695261 | 1.1:-736071 | None:intergenic |
| AGTTTGATAAAAGTGGCAAG+AGG | 0.695485 | 1.1:-735528 | None:intergenic |
| GTGTGCATCAGTCAGCATGG+AGG | 0.745962 | 1.1:+735201 | MS.gene27063:CDS |
| ATGCAAATGAGTGCATTTGG+GGG | 0.767185 | 1.1:+736377 | MS.gene27063:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 727954 | 736436 | 727954 | ID=MS.gene27063 |
| chr1.1 | mRNA | 727954 | 736436 | 727954 | ID=MS.gene27063.t1;Parent=MS.gene27063 |
| chr1.1 | exon | 727954 | 728039 | 727954 | ID=MS.gene27063.t1.exon1;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 727954 | 728039 | 727954 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 729088 | 729197 | 729088 | ID=MS.gene27063.t1.exon2;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 729088 | 729197 | 729088 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 730220 | 730373 | 730220 | ID=MS.gene27063.t1.exon3;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 730220 | 730373 | 730220 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 730659 | 730740 | 730659 | ID=MS.gene27063.t1.exon4;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 730659 | 730740 | 730659 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 731162 | 731232 | 731162 | ID=MS.gene27063.t1.exon5;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 731162 | 731232 | 731162 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 731709 | 731750 | 731709 | ID=MS.gene27063.t1.exon6;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 731709 | 731750 | 731709 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 733155 | 733279 | 733155 | ID=MS.gene27063.t1.exon7;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 733155 | 733279 | 733155 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 734397 | 734487 | 734397 | ID=MS.gene27063.t1.exon8;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 734397 | 734487 | 734397 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 735018 | 735114 | 735018 | ID=MS.gene27063.t1.exon9;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 735018 | 735114 | 735018 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 735193 | 735389 | 735193 | ID=MS.gene27063.t1.exon10;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 735193 | 735389 | 735193 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 735480 | 735585 | 735480 | ID=MS.gene27063.t1.exon11;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 735480 | 735585 | 735480 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 736071 | 736157 | 736071 | ID=MS.gene27063.t1.exon12;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 736071 | 736157 | 736071 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| chr1.1 | exon | 736350 | 736436 | 736350 | ID=MS.gene27063.t1.exon13;Parent=MS.gene27063.t1 |
| chr1.1 | CDS | 736350 | 736436 | 736350 | ID=cds.MS.gene27063.t1;Parent=MS.gene27063.t1 |
| Gene Sequence |
| Protein sequence |