Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002729.t1 | XP_003593912.1 | 99.6 | 745 | 3 | 0 | 23 | 767 | 44 | 788 | 0.00E+00 | 1466.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002729.t1 | Q8LGH4 | 80.8 | 775 | 129 | 3 | 1 | 767 | 26 | 788 | 0.0e+00 | 1218.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002729.t1 | G7IP77 | 99.6 | 745 | 3 | 0 | 23 | 767 | 44 | 788 | 0.0e+00 | 1466.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene25469 | MS.gene002729 | PPI |
MS.gene035311 | MS.gene002729 | PPI |
MS.gene036510 | MS.gene002729 | PPI |
MS.gene073389 | MS.gene002729 | PPI |
MS.gene055864 | MS.gene002729 | PPI |
MS.gene25471 | MS.gene002729 | PPI |
MS.gene34691 | MS.gene002729 | PPI |
MS.gene041539 | MS.gene002729 | PPI |
MS.gene00337 | MS.gene002729 | PPI |
MS.gene35971 | MS.gene002729 | PPI |
MS.gene002729 | MS.gene004599 | PPI |
MS.gene91206 | MS.gene002729 | PPI |
MS.gene58919 | MS.gene002729 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002729.t1 | MTR_2g019260 | 99.609 | 767 | 3 | 0 | 1 | 767 | 22 | 788 | 0.0 | 1584 |
MS.gene002729.t1 | MTR_2g019260 | 99.728 | 735 | 2 | 0 | 1 | 735 | 22 | 756 | 0.0 | 1524 |
MS.gene002729.t1 | MTR_8g056030 | 39.945 | 731 | 406 | 14 | 53 | 763 | 6 | 723 | 3.44e-172 | 513 |
MS.gene002729.t1 | MTR_5g039880 | 40.993 | 705 | 395 | 12 | 70 | 760 | 24 | 721 | 3.11e-169 | 506 |
MS.gene002729.t1 | MTR_6g011700 | 40.028 | 727 | 383 | 16 | 53 | 761 | 4 | 695 | 1.45e-166 | 498 |
MS.gene002729.t1 | MTR_6g011770 | 39.423 | 728 | 386 | 16 | 53 | 761 | 4 | 695 | 3.23e-157 | 474 |
MS.gene002729.t1 | MTR_7g039690 | 39.205 | 704 | 385 | 12 | 70 | 760 | 24 | 697 | 3.90e-155 | 468 |
MS.gene002729.t1 | MTR_7g039660 | 39.149 | 705 | 403 | 14 | 70 | 763 | 23 | 712 | 8.35e-151 | 457 |
MS.gene002729.t1 | MTR_7g108340 | 33.238 | 701 | 422 | 15 | 98 | 765 | 42 | 729 | 5.09e-117 | 370 |
MS.gene002729.t1 | MTR_4g119413 | 33.286 | 709 | 425 | 14 | 94 | 765 | 41 | 738 | 2.40e-116 | 369 |
MS.gene002729.t1 | MTR_2g437390 | 33.287 | 712 | 427 | 14 | 89 | 763 | 34 | 734 | 4.08e-116 | 368 |
MS.gene002729.t1 | MTR_7g039790 | 34.113 | 727 | 432 | 18 | 53 | 760 | 8 | 706 | 7.35e-116 | 367 |
MS.gene002729.t1 | MTR_1g040925 | 38.176 | 592 | 334 | 11 | 186 | 763 | 360 | 933 | 9.20e-114 | 367 |
MS.gene002729.t1 | MTR_1g040925 | 28.989 | 376 | 238 | 10 | 66 | 423 | 25 | 389 | 1.19e-38 | 155 |
MS.gene002729.t1 | MTR_7g445240 | 33.517 | 725 | 423 | 20 | 53 | 760 | 8 | 690 | 3.94e-108 | 346 |
MS.gene002729.t1 | MTR_5g039770 | 35.861 | 633 | 364 | 17 | 143 | 760 | 38 | 643 | 5.05e-108 | 344 |
MS.gene002729.t1 | MTR_1g040995 | 39.216 | 510 | 297 | 8 | 186 | 684 | 360 | 867 | 1.13e-105 | 344 |
MS.gene002729.t1 | MTR_1g040995 | 28.989 | 376 | 238 | 10 | 66 | 423 | 25 | 389 | 1.17e-38 | 155 |
MS.gene002729.t1 | MTR_4g119413 | 30.922 | 553 | 340 | 12 | 94 | 611 | 41 | 586 | 1.70e-76 | 260 |
MS.gene002729.t1 | MTR_5g039890 | 31.116 | 466 | 257 | 10 | 53 | 461 | 4 | 462 | 1.47e-63 | 221 |
MS.gene002729.t1 | MTR_5g040040 | 39.178 | 365 | 175 | 10 | 407 | 763 | 253 | 578 | 2.60e-60 | 214 |
MS.gene002729.t1 | MTR_5g040180 | 31.165 | 369 | 232 | 10 | 67 | 421 | 9 | 369 | 3.17e-44 | 164 |
MS.gene002729.t1 | MTR_1g040965 | 44.000 | 200 | 107 | 4 | 569 | 763 | 11 | 210 | 3.56e-43 | 156 |
MS.gene002729.t1 | MTR_7g039680 | 29.589 | 365 | 225 | 7 | 53 | 406 | 4 | 347 | 3.69e-43 | 160 |
MS.gene002729.t1 | MTR_5g040190 | 31.988 | 322 | 198 | 10 | 67 | 376 | 9 | 321 | 1.81e-40 | 152 |
MS.gene002729.t1 | MTR_7g039430 | 32.099 | 324 | 195 | 10 | 67 | 376 | 9 | 321 | 6.19e-40 | 151 |
MS.gene002729.t1 | MTR_7g039440 | 32.765 | 293 | 180 | 7 | 141 | 421 | 18 | 305 | 2.91e-39 | 148 |
MS.gene002729.t1 | MTR_7g039380 | 30.198 | 202 | 133 | 5 | 67 | 264 | 9 | 206 | 7.75e-25 | 103 |
MS.gene002729.t1 | MTR_5g040230 | 29.630 | 162 | 109 | 3 | 105 | 264 | 109 | 267 | 1.99e-19 | 89.4 |
MS.gene002729.t1 | MTR_7g039770 | 49.367 | 79 | 28 | 2 | 684 | 760 | 117 | 185 | 2.65e-12 | 67.0 |
MS.gene002729.t1 | MTR_7g445230 | 49.367 | 79 | 28 | 2 | 684 | 760 | 117 | 185 | 2.65e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene002729.t1 | AT5G46210 | 80.774 | 775 | 129 | 3 | 1 | 767 | 26 | 788 | 0.0 | 1261 |
MS.gene002729.t1 | AT1G26830 | 40.356 | 731 | 409 | 13 | 50 | 763 | 4 | 724 | 4.33e-177 | 526 |
MS.gene002729.t1 | AT1G69670 | 39.560 | 728 | 419 | 12 | 50 | 763 | 4 | 724 | 5.92e-177 | 526 |
MS.gene002729.t1 | AT1G69670 | 39.560 | 728 | 419 | 12 | 50 | 763 | 4 | 724 | 5.92e-177 | 526 |
MS.gene002729.t1 | AT4G02570 | 32.698 | 734 | 442 | 16 | 72 | 764 | 9 | 731 | 3.66e-120 | 379 |
MS.gene002729.t1 | AT4G02570 | 32.698 | 734 | 442 | 16 | 72 | 764 | 9 | 731 | 3.66e-120 | 379 |
MS.gene002729.t1 | AT4G02570 | 32.698 | 734 | 442 | 16 | 72 | 764 | 9 | 731 | 3.66e-120 | 379 |
MS.gene002729.t1 | AT4G02570 | 32.698 | 734 | 442 | 16 | 72 | 764 | 9 | 731 | 3.66e-120 | 379 |
MS.gene002729.t1 | AT1G02980 | 30.665 | 737 | 451 | 18 | 75 | 764 | 12 | 735 | 7.48e-104 | 336 |
MS.gene002729.t1 | AT1G02980 | 30.665 | 737 | 451 | 18 | 75 | 764 | 12 | 735 | 7.48e-104 | 336 |
MS.gene002729.t1 | AT1G43140 | 30.411 | 730 | 436 | 18 | 72 | 763 | 18 | 713 | 1.58e-92 | 305 |
MS.gene002729.t1 | AT4G12100 | 32.759 | 348 | 204 | 8 | 73 | 406 | 79 | 410 | 6.29e-50 | 182 |
MS.gene002729.t1 | AT3G46910 | 36.170 | 235 | 126 | 6 | 60 | 276 | 16 | 244 | 6.46e-33 | 128 |
MS.gene002729.t1 | AT1G59790 | 25.610 | 328 | 220 | 11 | 97 | 408 | 47 | 366 | 1.36e-18 | 89.0 |
MS.gene002729.t1 | AT1G59790 | 25.237 | 317 | 213 | 11 | 97 | 397 | 47 | 355 | 5.53e-16 | 80.9 |
MS.gene002729.t1 | AT2G04660 | 26.000 | 200 | 142 | 2 | 444 | 638 | 537 | 735 | 1.46e-11 | 68.6 |
Find 166 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATCCCTTCTTGAATTTA+AGG | 0.088937 | 2.1:+67790423 | MS.gene002729:CDS |
TGATCTTTGCATTCATAAAA+TGG | 0.127842 | 2.1:+67783211 | MS.gene002729:CDS |
GTTGGCTGTCTCCCTATTTC+AGG | 0.192113 | 2.1:+67793946 | MS.gene002729:CDS |
CACCAAATATACGGTCAATA+TGG | 0.199641 | 2.1:+67783429 | MS.gene002729:CDS |
TCCCATATTGACCGTATATT+TGG | 0.202482 | 2.1:-67783431 | None:intergenic |
TCGTGGTATAGCCTTGTTTC+TGG | 0.208174 | 2.1:+67783385 | MS.gene002729:CDS |
TTTAAATCAGCTGGTTTAAT+AGG | 0.212702 | 2.1:-67795897 | None:intergenic |
TTGAAAGGCAAACCTGAAAT+AGG | 0.219722 | 2.1:-67793958 | None:intergenic |
ATAGGGTTTCTCTATGCTTA+TGG | 0.229023 | 2.1:+67790252 | MS.gene002729:intron |
TAAACTTCGTGCGGGTAATA+AGG | 0.239914 | 2.1:+67791945 | MS.gene002729:CDS |
ATGCTCAAATGCGTCTTTAA+TGG | 0.244930 | 2.1:-67790503 | None:intergenic |
TGTCTTGTCTTCAAAATTAC+TGG | 0.258979 | 2.1:-67782976 | None:intergenic |
CGGCGGCGCCGCCTCTAATA+TGG | 0.266801 | 2.1:+67781619 | MS.gene002729:CDS |
TTTCCAAGATCGTCAATATC+AGG | 0.294842 | 2.1:+67794635 | MS.gene002729:CDS |
CAAGCTGGAAGGAATGTTTA+AGG | 0.300663 | 2.1:+67792411 | MS.gene002729:CDS |
ATCTGCAGCACTGCAGTCTT+TGG | 0.301773 | 2.1:+67783280 | MS.gene002729:CDS |
GTTAAAGATGTTTACTGCTC+TGG | 0.301775 | 2.1:+67789435 | MS.gene002729:CDS |
CCTGATTGACAGAGAATATC+TGG | 0.307979 | 2.1:+67795935 | MS.gene002729:CDS |
GATAGAAATACAATCAAATC+TGG | 0.313580 | 2.1:-67783314 | None:intergenic |
CGCCCCTCTTTACCGTATAA+AGG | 0.325505 | 2.1:+67794375 | MS.gene002729:CDS |
CGACTTGGAGAAGCTTTATC+AGG | 0.336314 | 2.1:+67783055 | MS.gene002729:CDS |
ATGGGTATTGTACCTTTATA+CGG | 0.337851 | 2.1:-67794387 | None:intergenic |
CTTTGGGAAAATCTGCCTTT+AGG | 0.342861 | 2.1:-67793913 | None:intergenic |
AAACTTCGTGCGGGTAATAA+GGG | 0.344019 | 2.1:+67791946 | MS.gene002729:CDS |
AGCCTTCACCTTGGAGATCA+TGG | 0.344264 | 2.1:-67792272 | None:intergenic |
CTCATGTGGCAAAATTCTTT+AGG | 0.360455 | 2.1:+67793881 | MS.gene002729:CDS |
TCTCCTGATGTATGAACTAA+TGG | 0.362057 | 2.1:-67790353 | None:intergenic |
CTTCCAGCTTGTTTGTGAAC+TGG | 0.365773 | 2.1:-67792399 | None:intergenic |
GTTCAACACAAAACTGTTAC+TGG | 0.371377 | 2.1:+67783500 | MS.gene002729:CDS |
CAAAATTACTGGGCACTGTT+GGG | 0.381314 | 2.1:-67782965 | None:intergenic |
AGCGTTCATGTCTTGACAAC+AGG | 0.381602 | 2.1:+67793566 | MS.gene002729:CDS |
CTTGCTAAAAGACTACTCTT+AGG | 0.384308 | 2.1:+67792220 | MS.gene002729:CDS |
TATACCTGCCATTCTTGATA+AGG | 0.387173 | 2.1:+67790143 | MS.gene002729:CDS |
TCCACATGCTTCAAGTAATC+TGG | 0.392688 | 2.1:-67789553 | None:intergenic |
TAACCTGATATTGACGATCT+TGG | 0.398987 | 2.1:-67794638 | None:intergenic |
AACTGGACAGGGCATTGTTA+TGG | 0.399445 | 2.1:+67790375 | MS.gene002729:CDS |
AGAGCAAGTGCATTCTTTGA+AGG | 0.402989 | 2.1:-67790294 | None:intergenic |
GACTTCAGAAGAGGAATTAG+AGG | 0.407112 | 2.1:+67791969 | MS.gene002729:CDS |
CCAGATATTCTCTGTCAATC+AGG | 0.410647 | 2.1:-67795935 | None:intergenic |
TGAAACAATCACCAAATATA+CGG | 0.427214 | 2.1:+67783420 | MS.gene002729:CDS |
TGAAAGGCAAACCTGAAATA+GGG | 0.432050 | 2.1:-67793957 | None:intergenic |
ACCAAATATACGGTCAATAT+GGG | 0.435228 | 2.1:+67783430 | MS.gene002729:CDS |
ACTAAGCTTTCAAGATATCA+AGG | 0.436910 | 2.1:+67794109 | MS.gene002729:CDS |
TTCTCCAAGTCGCAGGAGTC+GGG | 0.437514 | 2.1:-67783044 | None:intergenic |
AAAAGTTCGTGTTCTACAAA+AGG | 0.437752 | 2.1:+67794190 | MS.gene002729:CDS |
AACCAGCTGATTTAAAGAAA+AGG | 0.437814 | 2.1:+67795904 | MS.gene002729:CDS |
AGGCGGCGCCGCCGCGAGGA+AGG | 0.440714 | 2.1:-67781610 | None:intergenic |
GATCTTTGCATTCATAAAAT+GGG | 0.446839 | 2.1:+67783212 | MS.gene002729:CDS |
TTAAAGATGTTTACTGCTCT+GGG | 0.447364 | 2.1:+67789436 | MS.gene002729:CDS |
ATGAATGCAAAGATCATTGA+CGG | 0.448526 | 2.1:-67783204 | None:intergenic |
CAAGATATCAAGGATTCTAC+TGG | 0.452433 | 2.1:+67794119 | MS.gene002729:CDS |
TCAAAATTACTGGGCACTGT+TGG | 0.453025 | 2.1:-67782966 | None:intergenic |
AGTTCATACATCAGGAGAAC+TGG | 0.453158 | 2.1:+67790358 | MS.gene002729:CDS |
TCTTCCACATCTCTACCCTT+TGG | 0.458927 | 2.1:-67794319 | None:intergenic |
TCATGAATTGAATGTTTACC+AGG | 0.462056 | 2.1:+67793710 | MS.gene002729:CDS |
TATTACTGAACTCTTCCAAC+AGG | 0.462708 | 2.1:+67795510 | MS.gene002729:CDS |
AGAAGCTTCTTAGCAGGTTG+AGG | 0.465867 | 2.1:-67781674 | None:intergenic |
TGAAAGATGTTTGATCTACT+TGG | 0.468770 | 2.1:+67790062 | MS.gene002729:CDS |
TACGAATGATTGACAGTGAA+AGG | 0.468836 | 2.1:+67783528 | MS.gene002729:CDS |
AAAATTCAGATGTACATTCA+AGG | 0.475948 | 2.1:-67789489 | None:intergenic |
TTTAGGTCACTGTGTCCTAA+AGG | 0.476864 | 2.1:+67793898 | MS.gene002729:CDS |
CGCTCATTTCAATGCCTGAT+GGG | 0.486939 | 2.1:-67793547 | None:intergenic |
GAGATTAGCAGCCATATTAG+AGG | 0.491945 | 2.1:-67781630 | None:intergenic |
TACCACGAATCATCAACATT+TGG | 0.492711 | 2.1:-67783370 | None:intergenic |
AAACAACCATTGTGAACTAA+AGG | 0.493443 | 2.1:+67796353 | MS.gene002729:CDS |
AGGCTGCTCTTGACACAACA+TGG | 0.497636 | 2.1:+67790443 | MS.gene002729:CDS |
TTGATGAGAAGCTTCTTAGC+AGG | 0.505221 | 2.1:-67781680 | None:intergenic |
GCAGCACTGCAGTCTTTGGT+TGG | 0.507190 | 2.1:+67783284 | MS.gene002729:CDS |
GTACCTTTATACGGTAAAGA+GGG | 0.508391 | 2.1:-67794378 | None:intergenic |
CTTCTCCAAGTCGCAGGAGT+CGG | 0.508524 | 2.1:-67783045 | None:intergenic |
GGTGAATGCAATTCAGTTGA+AGG | 0.508957 | 2.1:+67794575 | MS.gene002729:intron |
AAAGGGCAAGGATGTGTTTG+AGG | 0.509726 | 2.1:+67792180 | MS.gene002729:intron |
AGGCCATTAGTTCATACATC+AGG | 0.510040 | 2.1:+67790350 | MS.gene002729:CDS |
TCTTTATCAACGGATTGAAA+AGG | 0.513524 | 2.1:+67783241 | MS.gene002729:CDS |
AACTTGGCAATCAACTCTGC+AGG | 0.515108 | 2.1:-67791913 | None:intergenic |
AGGTTTGAGATCGTCGTCCA+TGG | 0.517197 | 2.1:-67781582 | None:intergenic |
GCAACCCGACTCCTGCGACT+TGG | 0.518198 | 2.1:+67783040 | MS.gene002729:CDS |
TGTACCTTTATACGGTAAAG+AGG | 0.518229 | 2.1:-67794379 | None:intergenic |
TGCCCTTGAGTCATTGAGGC+AGG | 0.519952 | 2.1:+67790330 | MS.gene002729:CDS |
ATGAGGAAGTCTGACATCCA+TGG | 0.522877 | 2.1:-67793691 | None:intergenic |
ATACATCAGGAGAACTGGAC+AGG | 0.527967 | 2.1:+67790363 | MS.gene002729:CDS |
GCGAGAACAAAACTCCCATC+AGG | 0.529523 | 2.1:+67793533 | MS.gene002729:CDS |
TCAGATGTACATTCAAGGAA+TGG | 0.531912 | 2.1:-67789484 | None:intergenic |
TATCTCTAGTCGAGAGATGT+TGG | 0.533357 | 2.1:+67783333 | MS.gene002729:CDS |
TTGTGAGGATAATGAAAACT+AGG | 0.536734 | 2.1:+67795464 | MS.gene002729:CDS |
GAGCAAAACCTTATCAAGAA+TGG | 0.537185 | 2.1:-67790151 | None:intergenic |
AAAACCTTATCAAGAATGGC+AGG | 0.537415 | 2.1:-67790147 | None:intergenic |
CATGTATTTCACACCTTCAG+CGG | 0.540716 | 2.1:-67789515 | None:intergenic |
CTTTGCATTCATAAAATGGG+TGG | 0.540904 | 2.1:+67783215 | MS.gene002729:CDS |
GCATCTTATCAATCTCCGTC+AGG | 0.543130 | 2.1:+67790522 | MS.gene002729:CDS |
AGCTTCTTAGCAGGTTGAGG+AGG | 0.543443 | 2.1:-67781671 | None:intergenic |
GTCGAAAACGACGTCGTCGA+AGG | 0.545566 | 2.1:-67781555 | None:intergenic |
ATCCTTCAGACAGTCATCCC+AGG | 0.545646 | 2.1:+67793511 | MS.gene002729:CDS |
CGCCTGGGATGACTGTCTGA+AGG | 0.549291 | 2.1:-67793513 | None:intergenic |
GAGCAGCCTTAAATTCAAGA+AGG | 0.550464 | 2.1:-67790429 | None:intergenic |
GGGCACACTTGATAAAGTCC+TGG | 0.550472 | 2.1:+67791990 | MS.gene002729:CDS |
GGCGCCGCCGCGAGGAAGGT+CGG | 0.550677 | 2.1:-67781606 | None:intergenic |
AGCAGCCTTAAATTCAAGAA+GGG | 0.554319 | 2.1:-67790428 | None:intergenic |
GTCTTGTCTTCAAAATTACT+GGG | 0.555479 | 2.1:-67782975 | None:intergenic |
ATAGAAATACAATCAAATCT+GGG | 0.555611 | 2.1:-67783313 | None:intergenic |
GGTTTCTCTATGCTTATGGA+TGG | 0.557005 | 2.1:+67790256 | MS.gene002729:CDS |
GACCAAATGTTGATGATTCG+TGG | 0.557183 | 2.1:+67783368 | MS.gene002729:CDS |
TGGCCTGCCTCAATGACTCA+AGG | 0.558373 | 2.1:-67790333 | None:intergenic |
CAGTAAACATCTTTAACAGA+TGG | 0.561133 | 2.1:-67789429 | None:intergenic |
ATCTGAGCAAATACAGTGGA+AGG | 0.561281 | 2.1:+67793855 | MS.gene002729:CDS |
TTTGCAGACAAGATTGCAAG+AGG | 0.563201 | 2.1:+67790035 | MS.gene002729:intron |
ATAAAGCTTCTCCAAGTCGC+AGG | 0.568208 | 2.1:-67783051 | None:intergenic |
TCTAGTCGAGAGATGTTGGC+AGG | 0.568237 | 2.1:+67783337 | MS.gene002729:CDS |
TGTGAACTGGCTACCACACT+CGG | 0.568678 | 2.1:-67792386 | None:intergenic |
TTCCAGATTAGGTGAAGCAG+TGG | 0.570830 | 2.1:+67789390 | MS.gene002729:intron |
TTTGCATTCATAAAATGGGT+GGG | 0.576229 | 2.1:+67783216 | MS.gene002729:CDS |
ATATGGCTGCTAATCTCGCT+CGG | 0.576271 | 2.1:+67781636 | MS.gene002729:CDS |
ACGCTCATTTCAATGCCTGA+TGG | 0.576822 | 2.1:-67793548 | None:intergenic |
ACAGGGCATTGTTATGGATG+AGG | 0.579098 | 2.1:+67790381 | MS.gene002729:CDS |
ACATCCATGGGTGGATATGT+TGG | 0.581084 | 2.1:-67793678 | None:intergenic |
AACATGCAACAGATGCCAAA+GGG | 0.584238 | 2.1:+67794304 | MS.gene002729:intron |
TTGGATGATAAACTTCGTGC+GGG | 0.584415 | 2.1:+67791937 | MS.gene002729:CDS |
CCGCCGCGAGGAAGGTCGGT+AGG | 0.585444 | 2.1:-67781602 | None:intergenic |
TAGCCAGTTCACAAACAAGC+TGG | 0.586128 | 2.1:+67792396 | MS.gene002729:CDS |
TATACGGTCAATATGGGACA+TGG | 0.587653 | 2.1:+67783436 | MS.gene002729:CDS |
TGAGGAAGTCTGACATCCAT+GGG | 0.588123 | 2.1:-67793690 | None:intergenic |
TGGGTGGGAATCTTTATCAA+CGG | 0.595371 | 2.1:+67783231 | MS.gene002729:CDS |
TGACAGAGAATATCTGGAGA+GGG | 0.603733 | 2.1:+67795941 | MS.gene002729:CDS |
GGCCTGCCTCAATGACTCAA+GGG | 0.604534 | 2.1:-67790332 | None:intergenic |
ATCTTGGAAAACTCTTTCTG+TGG | 0.605393 | 2.1:-67794622 | None:intergenic |
GTTCAGCCTTTAGTTCACAA+TGG | 0.606777 | 2.1:-67796359 | None:intergenic |
TCCAGATTACTTGAAGCATG+TGG | 0.612759 | 2.1:+67789552 | MS.gene002729:CDS |
CTGGCCAACATATCCACCCA+TGG | 0.617052 | 2.1:+67793674 | MS.gene002729:CDS |
AACTTCGTGCGGGTAATAAG+GGG | 0.617201 | 2.1:+67791947 | MS.gene002729:CDS |
TCGAAGACAAGGAACTGAGA+AGG | 0.619324 | 2.1:+67794144 | MS.gene002729:CDS |
TCAATGCCCTTGAGTCATTG+AGG | 0.623443 | 2.1:+67790326 | MS.gene002729:CDS |
CAGTTCACAAACAAGCTGGA+AGG | 0.623690 | 2.1:+67792400 | MS.gene002729:CDS |
GATGCCAAAGGGTAGAGATG+TGG | 0.624974 | 2.1:+67794315 | MS.gene002729:intron |
TTTGGATGATAAACTTCGTG+CGG | 0.625081 | 2.1:+67791936 | MS.gene002729:CDS |
ACAGTGGAAGGCGTCTCATG+TGG | 0.625966 | 2.1:+67793867 | MS.gene002729:CDS |
TGGTAAACATTCAATTCATG+AGG | 0.627301 | 2.1:-67793708 | None:intergenic |
TTAGAGGCGGCGCCGCCGCG+AGG | 0.627743 | 2.1:-67781614 | None:intergenic |
GAACATGCAACAGATGCCAA+AGG | 0.630147 | 2.1:+67794303 | MS.gene002729:intron |
TCAGTTGAAGGAGACAGTAG+AGG | 0.631451 | 2.1:+67794587 | MS.gene002729:CDS |
GCGTTCATGTCTTGACAACA+GGG | 0.632976 | 2.1:+67793567 | MS.gene002729:CDS |
TTCTACTGGTATCGAAGACA+AGG | 0.634091 | 2.1:+67794133 | MS.gene002729:CDS |
TACCTTTATACGGTAAAGAG+GGG | 0.638692 | 2.1:-67794377 | None:intergenic |
ACTCTGCAATCACTTGCATG+TGG | 0.641153 | 2.1:+67794167 | MS.gene002729:CDS |
TAATAAGGGGACTTCAGAAG+AGG | 0.644293 | 2.1:+67791960 | MS.gene002729:CDS |
GAATGAACCTGAATAAAACC+AGG | 0.646175 | 2.1:-67792008 | None:intergenic |
CTTCTCATCAAGCTCCACAA+AGG | 0.647325 | 2.1:+67781692 | MS.gene002729:CDS |
ATGCAGTTGAAGACCGAGTG+TGG | 0.648552 | 2.1:+67792373 | MS.gene002729:intron |
AGATTACTTGAAGCATGTGG+AGG | 0.650956 | 2.1:+67789555 | MS.gene002729:CDS |
GGAGAAATCCATGATCTCCA+AGG | 0.653599 | 2.1:+67792264 | MS.gene002729:CDS |
TGGCAATCAACTCTGCAGGT+CGG | 0.662336 | 2.1:-67791909 | None:intergenic |
TTGACAGAGAATATCTGGAG+AGG | 0.663051 | 2.1:+67795940 | MS.gene002729:CDS |
GGCTGCTCTTGACACAACAT+GGG | 0.668657 | 2.1:+67790444 | MS.gene002729:CDS |
ATATGTTCTATCCAGAAACA+AGG | 0.671464 | 2.1:-67783396 | None:intergenic |
ATACGGTCAATATGGGACAT+GGG | 0.673693 | 2.1:+67783437 | MS.gene002729:CDS |
ACTTCAGAAGAGGAATTAGA+GGG | 0.674918 | 2.1:+67791970 | MS.gene002729:CDS |
TGAGGAGAAAGATAAAGACA+TGG | 0.677344 | 2.1:+67790399 | MS.gene002729:CDS |
TTCTATCTGAGCAAATACAG+TGG | 0.683202 | 2.1:+67793851 | MS.gene002729:CDS |
TACATCAGGAGAACTGGACA+GGG | 0.684375 | 2.1:+67790364 | MS.gene002729:CDS |
AGAGTGAGAAATGACCTTTG+TGG | 0.684737 | 2.1:-67781706 | None:intergenic |
AAAGAGTGCTTCAATTGACG+CGG | 0.692090 | 2.1:+67792243 | MS.gene002729:CDS |
CTTTATACGGTAAAGAGGGG+CGG | 0.695442 | 2.1:-67794374 | None:intergenic |
ATTAGCAGCCATATTAGAGG+CGG | 0.711323 | 2.1:-67781627 | None:intergenic |
GGAAGTCTGACATCCATGGG+TGG | 0.712438 | 2.1:-67793687 | None:intergenic |
AGGTCGATGCTGCTATTGTG+AGG | 0.737367 | 2.1:+67795449 | MS.gene002729:intron |
AAACCTACCGACCTTCCTCG+CGG | 0.739045 | 2.1:+67781599 | MS.gene002729:CDS |
CCTACCGACCTTCCTCGCGG+CGG | 0.754969 | 2.1:+67781602 | MS.gene002729:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.1 | gene | 67781530 | 67796372 | 67781530 | ID=MS.gene002729 |
chr2.1 | mRNA | 67781530 | 67796372 | 67781530 | ID=MS.gene002729.t1;Parent=MS.gene002729 |
chr2.1 | exon | 67781530 | 67781713 | 67781530 | ID=MS.gene002729.t1.exon1;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67781530 | 67781713 | 67781530 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67782961 | 67783076 | 67782961 | ID=MS.gene002729.t1.exon2;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67782961 | 67783076 | 67782961 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67783203 | 67783549 | 67783203 | ID=MS.gene002729.t1.exon3;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67783203 | 67783549 | 67783203 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67789396 | 67789576 | 67789396 | ID=MS.gene002729.t1.exon4;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67789396 | 67789576 | 67789396 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67790042 | 67790164 | 67790042 | ID=MS.gene002729.t1.exon5;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67790042 | 67790164 | 67790042 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67790256 | 67790543 | 67790256 | ID=MS.gene002729.t1.exon6;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67790256 | 67790543 | 67790256 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67791907 | 67792032 | 67791907 | ID=MS.gene002729.t1.exon7;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67791907 | 67792032 | 67791907 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67792184 | 67792285 | 67792184 | ID=MS.gene002729.t1.exon8;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67792184 | 67792285 | 67792184 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67792379 | 67792432 | 67792379 | ID=MS.gene002729.t1.exon9;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67792379 | 67792432 | 67792379 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67793482 | 67793588 | 67793482 | ID=MS.gene002729.t1.exon10;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67793482 | 67793588 | 67793482 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67793671 | 67793731 | 67793671 | ID=MS.gene002729.t1.exon11;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67793671 | 67793731 | 67793671 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67793836 | 67793967 | 67793836 | ID=MS.gene002729.t1.exon12;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67793836 | 67793967 | 67793836 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67794074 | 67794211 | 67794074 | ID=MS.gene002729.t1.exon13;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67794074 | 67794211 | 67794074 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67794316 | 67794396 | 67794316 | ID=MS.gene002729.t1.exon14;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67794316 | 67794396 | 67794316 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67794576 | 67794656 | 67794576 | ID=MS.gene002729.t1.exon15;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67794576 | 67794656 | 67794576 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67795451 | 67795531 | 67795451 | ID=MS.gene002729.t1.exon16;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67795451 | 67795531 | 67795451 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67795888 | 67795980 | 67795888 | ID=MS.gene002729.t1.exon17;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67795888 | 67795980 | 67795888 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
chr2.1 | exon | 67796334 | 67796372 | 67796334 | ID=MS.gene002729.t1.exon18;Parent=MS.gene002729.t1 |
chr2.1 | CDS | 67796334 | 67796372 | 67796334 | ID=cds.MS.gene002729.t1;Parent=MS.gene002729.t1 |
Gene Sequence |
Protein sequence |