Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25469.t1 | PNY10018.1 | 96.6 | 674 | 23 | 0 | 1 | 674 | 52 | 725 | 0.00E+00 | 1291.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25469.t1 | Q9ZVH4 | 81.6 | 674 | 124 | 0 | 1 | 674 | 59 | 732 | 0.0e+00 | 1119.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25469.t1 | A0A2K3P402 | 96.6 | 674 | 23 | 0 | 1 | 674 | 52 | 725 | 0.0e+00 | 1291.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene25469 | 0.842778 | 2.10E-58 | -1.69E-46 |
| MS.gene049368 | MS.gene25469 | 0.809635 | 1.72E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene25469 | 0.805558 | 1.26E-49 | -1.69E-46 |
| MS.gene049801 | MS.gene25469 | 0.806162 | 9.40E-50 | -1.69E-46 |
| MS.gene049983 | MS.gene25469 | 0.844374 | 7.86E-59 | -1.69E-46 |
| MS.gene050551 | MS.gene25469 | 0.808781 | 2.62E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene25469 | 0.845175 | 4.78E-59 | -1.69E-46 |
| MS.gene050941 | MS.gene25469 | 0.823911 | 1.07E-53 | -1.69E-46 |
| MS.gene051147 | MS.gene25469 | 0.82198 | 3.02E-53 | -1.69E-46 |
| MS.gene051184 | MS.gene25469 | 0.805003 | 1.65E-49 | -1.69E-46 |
| MS.gene051490 | MS.gene25469 | 0.81853 | 1.87E-52 | -1.69E-46 |
| MS.gene051541 | MS.gene25469 | 0.834853 | 2.36E-56 | -1.69E-46 |
| MS.gene051800 | MS.gene25469 | 0.832114 | 1.14E-55 | -1.69E-46 |
| MS.gene051852 | MS.gene25469 | 0.807918 | 4.00E-50 | -1.69E-46 |
| MS.gene052016 | MS.gene25469 | 0.814979 | 1.17E-51 | -1.69E-46 |
| MS.gene052052 | MS.gene25469 | 0.821347 | 4.24E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene25469 | 0.821356 | 4.22E-53 | -1.69E-46 |
| MS.gene052463 | MS.gene25469 | 0.860108 | 2.60E-63 | -1.69E-46 |
| MS.gene052493 | MS.gene25469 | 0.844734 | 6.29E-59 | -1.69E-46 |
| MS.gene052609 | MS.gene25469 | 0.832137 | 1.12E-55 | -1.69E-46 |
| MS.gene052674 | MS.gene25469 | 0.800711 | 1.27E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene25469 | 0.802701 | 4.95E-49 | -1.69E-46 |
| MS.gene052775 | MS.gene25469 | 0.805194 | 1.50E-49 | -1.69E-46 |
| MS.gene052776 | MS.gene25469 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene25469 | 0.802642 | 5.09E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene25469 | 0.827557 | 1.47E-54 | -1.69E-46 |
| MS.gene05350 | MS.gene25469 | 0.825752 | 3.95E-54 | -1.69E-46 |
| MS.gene053726 | MS.gene25469 | 0.808036 | 3.77E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene25469 | 0.838206 | 3.30E-57 | -1.69E-46 |
| MS.gene05454 | MS.gene25469 | 0.82938 | 5.32E-55 | -1.69E-46 |
| MS.gene054641 | MS.gene25469 | 0.836183 | 1.09E-56 | -1.69E-46 |
| MS.gene054892 | MS.gene25469 | 0.840623 | 7.78E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene25469 | 0.841681 | 4.10E-58 | -1.69E-46 |
| MS.gene055231 | MS.gene25469 | 0.807119 | 5.91E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene25469 | 0.80385 | 2.86E-49 | -1.69E-46 |
| MS.gene055469 | MS.gene25469 | 0.813229 | 2.84E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene25469 | 0.845121 | 4.95E-59 | -1.69E-46 |
| MS.gene05552 | MS.gene25469 | 0.800878 | 1.17E-48 | -1.69E-46 |
| MS.gene055864 | MS.gene25469 | 0.995884 | 5.91E-221 | -1.69E-46 |
| MS.gene055926 | MS.gene25469 | 0.80511 | 1.56E-49 | -1.69E-46 |
| MS.gene056045 | MS.gene25469 | 0.810286 | 1.24E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene25469 | 0.822667 | 2.10E-53 | -1.69E-46 |
| MS.gene056181 | MS.gene25469 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene056390 | MS.gene25469 | 0.814489 | 1.50E-51 | -1.69E-46 |
| MS.gene056480 | MS.gene25469 | 0.800868 | 1.18E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene25469 | 0.804798 | 1.82E-49 | -1.69E-46 |
| MS.gene056779 | MS.gene25469 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene05686 | MS.gene25469 | 0.801446 | 8.97E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene25469 | 0.820212 | 7.73E-53 | -1.69E-46 |
| MS.gene057360 | MS.gene25469 | 0.81229 | 4.57E-51 | -1.69E-46 |
| MS.gene057915 | MS.gene25469 | 0.809882 | 1.52E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene25469 | 0.808197 | 3.49E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene25469 | 0.864854 | 9.01E-65 | -1.69E-46 |
| MS.gene058095 | MS.gene25469 | 0.812997 | 3.20E-51 | -1.69E-46 |
| MS.gene058289 | MS.gene25469 | 0.872368 | 3.36E-67 | -1.69E-46 |
| MS.gene058292 | MS.gene25469 | 0.816904 | 4.35E-52 | -1.69E-46 |
| MS.gene058429 | MS.gene25469 | 0.853396 | 2.46E-61 | -1.69E-46 |
| MS.gene058758 | MS.gene25469 | 0.819603 | 1.07E-52 | -1.69E-46 |
| MS.gene05897 | MS.gene25469 | 0.809631 | 1.72E-50 | -1.69E-46 |
| MS.gene059170 | MS.gene25469 | 0.806207 | 9.20E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene25469 | 0.848648 | 5.36E-60 | -1.69E-46 |
| MS.gene059439 | MS.gene25469 | 0.815267 | 1.01E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene25469 | 0.819989 | 8.69E-53 | -1.69E-46 |
| MS.gene059965 | MS.gene25469 | 0.808244 | 3.41E-50 | -1.69E-46 |
| MS.gene060167 | MS.gene25469 | 0.801884 | 7.29E-49 | -1.69E-46 |
| MS.gene060191 | MS.gene25469 | 0.833103 | 6.46E-56 | -1.69E-46 |
| MS.gene060259 | MS.gene25469 | 0.803729 | 3.03E-49 | -1.69E-46 |
| MS.gene060380 | MS.gene25469 | 0.820332 | 7.25E-53 | -1.69E-46 |
| MS.gene060400 | MS.gene25469 | 0.810058 | 1.39E-50 | -1.69E-46 |
| MS.gene060435 | MS.gene25469 | 0.84882 | 4.80E-60 | -1.69E-46 |
| MS.gene060520 | MS.gene25469 | 0.810493 | 1.12E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene25469 | 0.85534 | 6.74E-62 | -1.69E-46 |
| MS.gene060777 | MS.gene25469 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene060785 | MS.gene25469 | 0.812656 | 3.80E-51 | -1.69E-46 |
| MS.gene060850 | MS.gene25469 | 0.823168 | 1.60E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene25469 | 0.816527 | 5.28E-52 | -1.69E-46 |
| MS.gene060852 | MS.gene25469 | 0.814677 | 1.36E-51 | -1.69E-46 |
| MS.gene06089 | MS.gene25469 | 0.810752 | 9.86E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene25469 | 0.848943 | 4.44E-60 | -1.69E-46 |
| MS.gene060933 | MS.gene25469 | 0.815079 | 1.11E-51 | -1.69E-46 |
| MS.gene060937 | MS.gene25469 | 0.803946 | 2.74E-49 | -1.69E-46 |
| MS.gene06121 | MS.gene25469 | 0.833375 | 5.53E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene25469 | MS.gene002729 | PPI |
| MS.gene25469 | MS.gene52721 | PPI |
| MS.gene25469 | MS.gene004599 | PPI |
| MS.gene25469 | MS.gene34691 | PPI |
| MS.gene25469 | MS.gene040704 | PPI |
| MS.gene25469 | MS.gene004416 | PPI |
| MS.gene25469 | MS.gene055864 | PPI |
| MS.gene25469 | MS.gene84069 | PPI |
| MS.gene25469 | MS.gene64806 | PPI |
| MS.gene25469 | MS.gene96241 | PPI |
| MS.gene25469 | MS.gene073670 | PPI |
| MS.gene25469 | MS.gene073674 | PPI |
| MS.gene25469 | MS.gene60611 | PPI |
| MS.gene25469 | MS.gene055944 | PPI |
| MS.gene25469 | MS.gene068164 | PPI |
| MS.gene25469 | MS.gene59505 | PPI |
| MS.gene25469 | MS.gene073389 | PPI |
| MS.gene25469 | MS.gene58919 | PPI |
| MS.gene00337 | MS.gene25469 | PPI |
| MS.gene25469 | MS.gene35971 | PPI |
| MS.gene040706 | MS.gene25469 | PPI |
| MS.gene25469 | MS.gene036510 | PPI |
| MS.gene25469 | MS.gene67485 | PPI |
| MS.gene041539 | MS.gene25469 | PPI |
| MS.gene04676 | MS.gene25469 | PPI |
| MS.gene25469 | MS.gene25471 | PPI |
| MS.gene25469 | MS.gene84072 | PPI |
| MS.gene25469 | MS.gene068166 | PPI |
| MS.gene25469 | MS.gene035311 | PPI |
| MS.gene25469 | MS.gene91206 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25469.t1 | MTR_8g056030 | 97.923 | 674 | 14 | 0 | 1 | 674 | 58 | 731 | 0.0 | 1374 |
| MS.gene25469.t1 | MTR_5g039880 | 81.454 | 674 | 125 | 0 | 1 | 674 | 59 | 732 | 0.0 | 1157 |
| MS.gene25469.t1 | MTR_7g039690 | 77.893 | 674 | 125 | 1 | 1 | 674 | 59 | 708 | 0.0 | 1093 |
| MS.gene25469.t1 | MTR_7g039660 | 77.893 | 674 | 138 | 2 | 1 | 674 | 58 | 720 | 0.0 | 1089 |
| MS.gene25469.t1 | MTR_6g011700 | 74.926 | 674 | 145 | 1 | 1 | 674 | 56 | 705 | 0.0 | 1037 |
| MS.gene25469.t1 | MTR_6g011770 | 71.810 | 674 | 166 | 1 | 1 | 674 | 56 | 705 | 0.0 | 989 |
| MS.gene25469.t1 | MTR_1g040925 | 75.753 | 598 | 127 | 2 | 79 | 674 | 360 | 941 | 0.0 | 932 |
| MS.gene25469.t1 | MTR_1g040925 | 72.881 | 295 | 80 | 0 | 1 | 295 | 65 | 359 | 1.21e-146 | 450 |
| MS.gene25469.t1 | MTR_1g040995 | 77.586 | 522 | 115 | 1 | 79 | 598 | 360 | 881 | 0.0 | 838 |
| MS.gene25469.t1 | MTR_1g040995 | 72.881 | 295 | 80 | 0 | 1 | 295 | 65 | 359 | 5.17e-147 | 449 |
| MS.gene25469.t1 | MTR_5g039770 | 56.490 | 678 | 267 | 6 | 1 | 674 | 1 | 654 | 0.0 | 763 |
| MS.gene25469.t1 | MTR_7g039790 | 56.765 | 680 | 261 | 7 | 1 | 674 | 65 | 717 | 0.0 | 760 |
| MS.gene25469.t1 | MTR_7g445240 | 55.030 | 676 | 263 | 6 | 1 | 674 | 65 | 701 | 0.0 | 728 |
| MS.gene25469.t1 | MTR_5g040040 | 64.773 | 528 | 79 | 5 | 147 | 674 | 166 | 586 | 0.0 | 657 |
| MS.gene25469.t1 | MTR_5g039890 | 69.853 | 408 | 78 | 2 | 1 | 363 | 56 | 463 | 0.0 | 569 |
| MS.gene25469.t1 | MTR_2g019260 | 41.194 | 687 | 371 | 14 | 1 | 674 | 126 | 792 | 8.39e-168 | 500 |
| MS.gene25469.t1 | MTR_5g040180 | 71.885 | 313 | 87 | 1 | 1 | 313 | 48 | 359 | 1.11e-162 | 472 |
| MS.gene25469.t1 | MTR_7g039680 | 71.207 | 323 | 69 | 3 | 1 | 322 | 56 | 355 | 1.56e-158 | 461 |
| MS.gene25469.t1 | MTR_2g019260 | 40.553 | 651 | 356 | 13 | 1 | 638 | 126 | 758 | 2.44e-154 | 465 |
| MS.gene25469.t1 | MTR_7g039440 | 71.622 | 296 | 83 | 1 | 18 | 313 | 1 | 295 | 2.78e-153 | 445 |
| MS.gene25469.t1 | MTR_7g039430 | 71.886 | 281 | 78 | 1 | 1 | 281 | 48 | 327 | 1.06e-142 | 420 |
| MS.gene25469.t1 | MTR_5g040190 | 68.683 | 281 | 87 | 1 | 1 | 281 | 48 | 327 | 3.37e-135 | 401 |
| MS.gene25469.t1 | MTR_7g108340 | 35.878 | 655 | 392 | 11 | 38 | 674 | 91 | 735 | 1.83e-130 | 402 |
| MS.gene25469.t1 | MTR_2g437390 | 34.564 | 677 | 409 | 12 | 22 | 674 | 76 | 742 | 1.40e-129 | 400 |
| MS.gene25469.t1 | MTR_4g119413 | 35.000 | 660 | 397 | 11 | 38 | 674 | 94 | 744 | 8.47e-127 | 393 |
| MS.gene25469.t1 | MTR_1g040965 | 81.019 | 216 | 41 | 0 | 459 | 674 | 3 | 218 | 1.43e-122 | 363 |
| MS.gene25469.t1 | MTR_4g119413 | 33.065 | 496 | 306 | 9 | 38 | 510 | 94 | 586 | 1.26e-85 | 281 |
| MS.gene25469.t1 | MTR_5g040230 | 72.956 | 159 | 43 | 0 | 1 | 159 | 109 | 267 | 7.83e-77 | 247 |
| MS.gene25469.t1 | MTR_7g039380 | 71.698 | 159 | 45 | 0 | 1 | 159 | 48 | 206 | 1.59e-76 | 244 |
| MS.gene25469.t1 | MTR_7g039770 | 59.434 | 106 | 41 | 1 | 406 | 509 | 1 | 106 | 3.37e-37 | 137 |
| MS.gene25469.t1 | MTR_7g039770 | 64.130 | 92 | 33 | 0 | 583 | 674 | 105 | 196 | 1.52e-30 | 119 |
| MS.gene25469.t1 | MTR_7g445230 | 59.434 | 106 | 41 | 1 | 406 | 509 | 1 | 106 | 3.37e-37 | 137 |
| MS.gene25469.t1 | MTR_7g445230 | 64.130 | 92 | 33 | 0 | 583 | 674 | 105 | 196 | 1.52e-30 | 119 |
| MS.gene25469.t1 | MTR_5g039820 | 44.512 | 164 | 51 | 2 | 511 | 674 | 1 | 124 | 7.54e-32 | 120 |
| MS.gene25469.t1 | MTR_1g099430 | 40.870 | 115 | 30 | 2 | 560 | 674 | 19 | 95 | 8.00e-17 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene25469.t1 | AT1G26830 | 81.602 | 674 | 124 | 0 | 1 | 674 | 59 | 732 | 0.0 | 1177 |
| MS.gene25469.t1 | AT1G69670 | 80.564 | 674 | 131 | 0 | 1 | 674 | 59 | 732 | 0.0 | 1163 |
| MS.gene25469.t1 | AT1G69670 | 80.564 | 674 | 131 | 0 | 1 | 674 | 59 | 732 | 0.0 | 1163 |
| MS.gene25469.t1 | AT5G46210 | 40.703 | 683 | 380 | 13 | 1 | 674 | 126 | 792 | 1.90e-159 | 479 |
| MS.gene25469.t1 | AT4G02570 | 35.258 | 658 | 395 | 11 | 38 | 674 | 91 | 738 | 5.05e-132 | 406 |
| MS.gene25469.t1 | AT4G02570 | 35.258 | 658 | 395 | 11 | 38 | 674 | 91 | 738 | 5.05e-132 | 406 |
| MS.gene25469.t1 | AT4G02570 | 35.258 | 658 | 395 | 11 | 38 | 674 | 91 | 738 | 5.05e-132 | 406 |
| MS.gene25469.t1 | AT4G02570 | 35.258 | 658 | 395 | 11 | 38 | 674 | 91 | 738 | 5.05e-132 | 406 |
| MS.gene25469.t1 | AT1G02980 | 33.234 | 674 | 416 | 12 | 25 | 674 | 79 | 742 | 5.11e-116 | 365 |
| MS.gene25469.t1 | AT1G02980 | 33.234 | 674 | 416 | 12 | 25 | 674 | 79 | 742 | 5.11e-116 | 365 |
| MS.gene25469.t1 | AT1G43140 | 32.263 | 685 | 418 | 16 | 6 | 674 | 67 | 721 | 1.10e-103 | 332 |
| MS.gene25469.t1 | AT1G59790 | 26.962 | 293 | 201 | 6 | 22 | 308 | 79 | 364 | 3.93e-29 | 120 |
| MS.gene25469.t1 | AT1G59790 | 27.530 | 247 | 170 | 5 | 22 | 262 | 79 | 322 | 1.38e-26 | 112 |
| MS.gene25469.t1 | AT1G59800 | 29.775 | 178 | 120 | 2 | 22 | 196 | 72 | 247 | 3.78e-22 | 97.1 |
| MS.gene25469.t1 | AT4G12100 | 22.388 | 268 | 181 | 8 | 6 | 259 | 118 | 372 | 1.89e-12 | 70.5 |
Find 139 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGGATCCTTCAATCTTTC+AGG | 0.166080 | 8.4:-42967853 | None:intergenic |
| AATATGGTGCTTCACAAATT+TGG | 0.198790 | 8.4:+42967058 | None:intergenic |
| CACAACACTCAATGAATCTT+TGG | 0.228824 | 8.4:-42967522 | None:intergenic |
| TACTCATCGGCTCCTTTCTA+AGG | 0.269735 | 8.4:-42968710 | None:intergenic |
| TTAATCCATATGGAGAATTC+TGG | 0.298338 | 8.4:+42967685 | MS.gene25469:CDS |
| AAACTATACAAGGTTAAAAT+AGG | 0.302125 | 8.4:+42968783 | MS.gene25469:CDS |
| ACAATCATTGGCTTTAGTTA+AGG | 0.303291 | 8.4:+42968677 | MS.gene25469:CDS |
| TGATGATAAATATGAAGATT+TGG | 0.316741 | 8.4:+42967726 | MS.gene25469:CDS |
| CAATCATTGGCTTTAGTTAA+GGG | 0.333046 | 8.4:+42968678 | MS.gene25469:CDS |
| ACGAGGAATTCAAAGCATTC+TGG | 0.343800 | 8.4:-42967957 | None:intergenic |
| GCAGACTTAAAAGCAACCTT+TGG | 0.354772 | 8.4:+42968516 | MS.gene25469:CDS |
| CTGCACTTTGCGAGAAGTTT+CGG | 0.357858 | 8.4:+42968433 | MS.gene25469:CDS |
| TCGGCTACTGAACACACTTC+TGG | 0.360939 | 8.4:+42967345 | MS.gene25469:CDS |
| TAAGAGATGTCTACAATCAT+TGG | 0.371194 | 8.4:+42968665 | MS.gene25469:CDS |
| TCAGTTTACATCAAAATTAG+AGG | 0.377339 | 8.4:+42968251 | MS.gene25469:CDS |
| ATGCGTTTCTTGACCTCTGT+TGG | 0.385513 | 8.4:-42968990 | None:intergenic |
| AGTTTCCTGTTTCTCAGGTT+CGG | 0.385761 | 8.4:-42968829 | None:intergenic |
| TGCCGAGTTTCCTGTTTCTC+AGG | 0.386423 | 8.4:-42968834 | None:intergenic |
| TGGAAGAACTGAACAGGAAA+TGG | 0.387376 | 8.4:+42967173 | MS.gene25469:CDS |
| ACTGTCCAGGTTCTTACAAC+AGG | 0.395150 | 8.4:+42968360 | MS.gene25469:CDS |
| TGAAATGAACTCTGGAGAAC+GGG | 0.408147 | 8.4:-42968004 | None:intergenic |
| GTAGGACCGTCGCCTAAGTC+AGG | 0.411159 | 8.4:-42968333 | None:intergenic |
| GGAATCCGAACCTGAGAAAC+AGG | 0.414007 | 8.4:+42968824 | MS.gene25469:CDS |
| TCATTTATTCCAACCAGATC+AGG | 0.420558 | 8.4:+42967320 | MS.gene25469:CDS |
| TATTACCTTGGCACACATAC+TGG | 0.423807 | 8.4:+42968459 | MS.gene25469:CDS |
| ACAACACTCAATGAATCTTT+GGG | 0.423919 | 8.4:-42967521 | None:intergenic |
| CAGCATTATTGAAAAGCATA+AGG | 0.426039 | 8.4:-42968587 | None:intergenic |
| GATGATAAATATGAAGATTT+GGG | 0.429458 | 8.4:+42967727 | MS.gene25469:CDS |
| AGCCTCTGCACAAACTCAAC+TGG | 0.433380 | 8.4:-42967871 | None:intergenic |
| CATGCTCAGATTAATCCATA+TGG | 0.434059 | 8.4:+42967675 | MS.gene25469:CDS |
| ACTTCACACATAAGGGAATC+TGG | 0.436605 | 8.4:+42967811 | MS.gene25469:CDS |
| AGGAACTGTAGTTGCACAAA+AGG | 0.436933 | 8.4:+42968803 | MS.gene25469:CDS |
| GTCGCCTAAGTCAGGGTGGC+TGG | 0.440169 | 8.4:-42968325 | None:intergenic |
| TACTGATCCTGAAAGATTGA+AGG | 0.441993 | 8.4:+42967846 | MS.gene25469:CDS |
| ACTTGTCATTGTTGAATGCC+AGG | 0.444070 | 8.4:-42967930 | None:intergenic |
| AACTCGGCAGCGAGTGGAGG+AGG | 0.446158 | 8.4:+42968848 | MS.gene25469:CDS |
| AAAGCATAAGGACACACATT+TGG | 0.448174 | 8.4:-42968575 | None:intergenic |
| GGCAGCGAGTGGAGGAGGAC+AGG | 0.448240 | 8.4:+42968853 | MS.gene25469:CDS |
| GAAGTATTATAAACAGCATC+TGG | 0.448249 | 8.4:+42968146 | MS.gene25469:CDS |
| CTAAACCAGAATTCTCCATA+TGG | 0.453764 | 8.4:-42967690 | None:intergenic |
| TAGTGAGGATCATGAAATCT+AGG | 0.463511 | 8.4:+42968898 | MS.gene25469:CDS |
| TATGCCAGCCACCCTGACTT+AGG | 0.464316 | 8.4:+42968321 | MS.gene25469:CDS |
| TGCTTCACAAATTTGGTGAT+AGG | 0.469912 | 8.4:+42967065 | MS.gene25469:CDS |
| TGTAGATGATAAACTTCGTA+AGG | 0.470956 | 8.4:+42968032 | MS.gene25469:CDS |
| AGCAACTGAGATTCCTGCTC+CGG | 0.471327 | 8.4:+42968638 | MS.gene25469:CDS |
| AGGTGATGACTTCACACATA+AGG | 0.478646 | 8.4:+42967803 | MS.gene25469:CDS |
| CAGTCTCGGGATCCATGTAA+TGG | 0.479832 | 8.4:-42967606 | None:intergenic |
| ACTGGTGAAGTTATTGATAG+AGG | 0.485538 | 8.4:+42967388 | MS.gene25469:CDS |
| AACCTCTCAGGACACAATGC+AGG | 0.487006 | 8.4:+42968293 | MS.gene25469:CDS |
| TGAAAAGAAGATTAATAAAG+TGG | 0.488330 | 8.4:+42967627 | MS.gene25469:CDS |
| TCAGTAGCCGAGTCCTGATC+TGG | 0.488597 | 8.4:-42967333 | None:intergenic |
| AGGTTCTTACAACAGGGTCT+TGG | 0.488962 | 8.4:+42968367 | MS.gene25469:CDS |
| TTCATTGAGTGTTGTGATTG+TGG | 0.489826 | 8.4:+42967529 | MS.gene25469:CDS |
| TTCAGCCCGAGTTCATGAAC+AGG | 0.490428 | 8.4:-42967280 | None:intergenic |
| GAGGCGTCTGAATGAGGAAA+TGG | 0.490900 | 8.4:+42967573 | MS.gene25469:CDS |
| CGGTCCTACGCTTACTGTCC+AGG | 0.496060 | 8.4:+42968347 | MS.gene25469:CDS |
| AACTTCGTAAGGGTCTGAAA+GGG | 0.499438 | 8.4:+42968043 | MS.gene25469:CDS |
| GGTGATGACTTCACACATAA+GGG | 0.500163 | 8.4:+42967804 | MS.gene25469:CDS |
| CAGACTTAAAAGCAACCTTT+GGG | 0.500900 | 8.4:+42968517 | MS.gene25469:CDS |
| TGATAGGTTGTACTCAGGAT+TGG | 0.503047 | 8.4:+42967081 | MS.gene25469:CDS |
| AAGACTCCTGTTCATGAACT+CGG | 0.516778 | 8.4:+42967274 | MS.gene25469:CDS |
| TGACCTCTGTTGGATTTGCA+AGG | 0.526865 | 8.4:-42968980 | None:intergenic |
| AAACTTCGTAAGGGTCTGAA+AGG | 0.527114 | 8.4:+42968042 | MS.gene25469:CDS |
| GGGAAGAAATGTCCTTAGAA+AGG | 0.527346 | 8.4:+42968698 | MS.gene25469:CDS |
| ACAAATAGTGAAATGAACTC+TGG | 0.529442 | 8.4:-42968012 | None:intergenic |
| AGCTGAGAGGCGTCTGAATG+AGG | 0.532045 | 8.4:+42967567 | MS.gene25469:CDS |
| TGTAGACATCTCTTAAGATC+CGG | 0.532519 | 8.4:-42968657 | None:intergenic |
| GTGCAGATATTTCCACCGGC+AGG | 0.534110 | 8.4:-42968416 | None:intergenic |
| GAGTATTACGTGCAACCTGC+CGG | 0.536343 | 8.4:+42968401 | MS.gene25469:CDS |
| CTGGTGAAGTTATTGATAGA+GGG | 0.538344 | 8.4:+42967389 | MS.gene25469:CDS |
| ATTGTCGTGGCAAACTAACA+TGG | 0.547488 | 8.4:+42968488 | MS.gene25469:CDS |
| TACAGACATGAAAACCTCTC+AGG | 0.548291 | 8.4:+42968281 | MS.gene25469:CDS |
| GGACAGGAAGCCTCAGATTG+AGG | 0.548487 | 8.4:+42968869 | MS.gene25469:CDS |
| ATGAACTCGGGCTGAATCTG+TGG | 0.550756 | 8.4:+42967287 | MS.gene25469:CDS |
| GGATAGAGTTAGCCATTACA+TGG | 0.551642 | 8.4:+42967594 | MS.gene25469:CDS |
| AAGTTTCGGTCTTATTACCT+TGG | 0.552048 | 8.4:+42968447 | MS.gene25469:CDS |
| AAGACCCTGTTGTAAGAACC+TGG | 0.553834 | 8.4:-42968365 | None:intergenic |
| TTTGGTGATAGGTTGTACTC+AGG | 0.562234 | 8.4:+42967076 | MS.gene25469:CDS |
| CTTAAAAGCAACCTTTGGGA+AGG | 0.563218 | 8.4:+42968521 | MS.gene25469:CDS |
| TGTAAACTGATAGCCACATT+CGG | 0.563890 | 8.4:-42968238 | None:intergenic |
| AAATCTATTGAAGCAGCTCA+AGG | 0.568181 | 8.4:+42967139 | MS.gene25469:CDS |
| TGCTGATAAACTTAGCTACA+AGG | 0.569495 | 8.4:+42968605 | MS.gene25469:CDS |
| AGACTCCTGTTCATGAACTC+GGG | 0.571232 | 8.4:+42967275 | MS.gene25469:CDS |
| CATCTCTTAAGATCCGGAGC+AGG | 0.571367 | 8.4:-42968651 | None:intergenic |
| ACCTTGGCACACATACTGGC+AGG | 0.571727 | 8.4:+42968463 | MS.gene25469:CDS |
| GTGAAATGAACTCTGGAGAA+CGG | 0.575403 | 8.4:-42968005 | None:intergenic |
| ACAGGAAACTCGGCAGCGAG+TGG | 0.580836 | 8.4:+42968842 | MS.gene25469:CDS |
| AGCCACCCTGACTTAGGCGA+CGG | 0.585562 | 8.4:+42968327 | MS.gene25469:CDS |
| TTAAAAGCAACCTTTGGGAA+GGG | 0.586426 | 8.4:+42968522 | MS.gene25469:CDS |
| ACTATCGCCGCCTCAATCTG+AGG | 0.586727 | 8.4:-42968879 | None:intergenic |
| ATAAATATGAAGATTTGGGT+AGG | 0.586773 | 8.4:+42967731 | MS.gene25469:CDS |
| TCCTGCCAGTATGTGTGCCA+AGG | 0.587792 | 8.4:-42968464 | None:intergenic |
| ATACGACAAGATTATAAACC+TGG | 0.588266 | 8.4:+42967912 | MS.gene25469:CDS |
| GGATGATGTAGAGGTTACTC+TGG | 0.590036 | 8.4:+42968074 | MS.gene25469:CDS |
| CATAAGGACACACATTTGGT+AGG | 0.591138 | 8.4:-42968571 | None:intergenic |
| CAGTTTACATCAAAATTAGA+GGG | 0.591739 | 8.4:+42968252 | MS.gene25469:CDS |
| AACCTGAGAAACAGGAAACT+CGG | 0.594659 | 8.4:+42968832 | MS.gene25469:CDS |
| CAAAGTGCAGATATTTCCAC+CGG | 0.598009 | 8.4:-42968420 | None:intergenic |
| ATTCCAACCAGATCAGGACT+CGG | 0.601328 | 8.4:+42967326 | MS.gene25469:CDS |
| ATGCTTCTGACCCTTCCCAA+AGG | 0.602178 | 8.4:-42968532 | None:intergenic |
| CTTAACAATGAGACTTCTCT+CGG | 0.603477 | 8.4:-42968208 | None:intergenic |
| TCACCAACATCTTTACTCAT+CGG | 0.604309 | 8.4:-42968723 | None:intergenic |
| TAGAGATATACTGATGTACA+TGG | 0.604770 | 8.4:+42967225 | MS.gene25469:CDS |
| AATTCTTGAGCATAAACAGA+TGG | 0.606533 | 8.4:-42967451 | None:intergenic |
| GTAGATGATAAACTTCGTAA+GGG | 0.607058 | 8.4:+42968033 | MS.gene25469:CDS |
| CACGTAATACTCGACTGAGT+TGG | 0.607158 | 8.4:-42968390 | None:intergenic |
| CTGTCCAGGTTCTTACAACA+GGG | 0.608852 | 8.4:+42968361 | MS.gene25469:CDS |
| ACCTCTCAGGACACAATGCA+GGG | 0.612857 | 8.4:+42968294 | MS.gene25469:CDS |
| TAGGACCGTCGCCTAAGTCA+GGG | 0.612941 | 8.4:-42968332 | None:intergenic |
| GGAAACTCGGCAGCGAGTGG+AGG | 0.615424 | 8.4:+42968845 | MS.gene25469:CDS |
| GTTAAGCTCAAGACCGAATG+TGG | 0.616613 | 8.4:+42968225 | MS.gene25469:CDS |
| AAAGAAGATTAATAAAGTGG+TGG | 0.620743 | 8.4:+42967630 | MS.gene25469:CDS |
| TAGCCGAGTCCTGATCTGGT+TGG | 0.622232 | 8.4:-42967329 | None:intergenic |
| AGATTGAGGCGGCGATAGTG+AGG | 0.627417 | 8.4:+42968883 | MS.gene25469:CDS |
| GAAATGAACTCTGGAGAACG+GGG | 0.628544 | 8.4:-42968003 | None:intergenic |
| ATAAACAGCATCTGGCAAAG+AGG | 0.630265 | 8.4:+42968154 | MS.gene25469:CDS |
| GTTCAGTAGTAAACTATACA+AGG | 0.638422 | 8.4:+42968773 | MS.gene25469:CDS |
| CAGGAAGCCTCAGATTGAGG+CGG | 0.640359 | 8.4:+42968872 | MS.gene25469:CDS |
| GGTCAACGAGGATGATGTAG+AGG | 0.645668 | 8.4:+42968065 | MS.gene25469:CDS |
| GAGCCGATGAGTAAAGATGT+TGG | 0.646356 | 8.4:+42968720 | MS.gene25469:CDS |
| ACTTCGTAAGGGTCTGAAAG+GGG | 0.649523 | 8.4:+42968044 | MS.gene25469:CDS |
| TTGTCGTGGCAAACTAACAT+GGG | 0.652331 | 8.4:+42968489 | MS.gene25469:CDS |
| GCCCTGCATTGTGTCCTGAG+AGG | 0.655976 | 8.4:-42968295 | None:intergenic |
| TTAGTACATAGTGAACGCAC+TGG | 0.661997 | 8.4:+42967370 | MS.gene25469:CDS |
| TATTACGTGCAACCTGCCGG+TGG | 0.663897 | 8.4:+42968404 | MS.gene25469:CDS |
| TTGTTCCGTCGTGTAACCGA+CGG | 0.664584 | 8.4:+42967763 | MS.gene25469:CDS |
| TGTAGAGGTTACTCTGGACA+AGG | 0.664682 | 8.4:+42968080 | MS.gene25469:CDS |
| ATCCAGTTGAGTTTGTGCAG+AGG | 0.670411 | 8.4:+42967869 | MS.gene25469:CDS |
| GACCGTCGCCTAAGTCAGGG+TGG | 0.696070 | 8.4:-42968329 | None:intergenic |
| TTTCCTTGCAAATCCAACAG+AGG | 0.698003 | 8.4:+42968977 | MS.gene25469:CDS |
| AGAACCTGGACAGTAAGCGT+AGG | 0.706663 | 8.4:-42968351 | None:intergenic |
| TCTATTGAAGCAGCTCAAGG+AGG | 0.716304 | 8.4:+42967142 | MS.gene25469:CDS |
| GGGTCTGAAAGGGGTCAACG+AGG | 0.729389 | 8.4:+42968053 | MS.gene25469:CDS |
| GTTAATGAAATATTCAAACG+AGG | 0.733246 | 8.4:-42967974 | None:intergenic |
| GATGAGTAAAGATGTTGGTG+AGG | 0.734708 | 8.4:+42968725 | MS.gene25469:CDS |
| AAATGAACTCTGGAGAACGG+GGG | 0.742959 | 8.4:-42968002 | None:intergenic |
| ATACTGGCAGGAGATTGTCG+TGG | 0.746214 | 8.4:+42968475 | MS.gene25469:CDS |
| AAAGACCGTCGGTTACACGA+CGG | 0.749089 | 8.4:-42967768 | None:intergenic |
| ATTATCTTAAGAAAGCTGAG+AGG | 0.761790 | 8.4:+42967554 | MS.gene25469:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAACAAAAATGCTAA+TGG | + | chr8.4:42967420-42967439 | MS.gene25469:CDS | 15.0% |
| !! | AAACTATACAAGGTTAAAAT+AGG | + | chr8.4:42968783-42968802 | MS.gene25469:CDS | 20.0% |
| !! | GATGATAAATATGAAGATTT+GGG | + | chr8.4:42967727-42967746 | MS.gene25469:CDS | 20.0% |
| !! | TGAAAAGAAGATTAATAAAG+TGG | + | chr8.4:42967627-42967646 | MS.gene25469:CDS | 20.0% |
| !! | TGATGATAAATATGAAGATT+TGG | + | chr8.4:42967726-42967745 | MS.gene25469:CDS | 20.0% |
| ! | AAAGAAGATTAATAAAGTGG+TGG | + | chr8.4:42967630-42967649 | MS.gene25469:CDS | 25.0% |
| ! | ATAAATATGAAGATTTGGGT+AGG | + | chr8.4:42967731-42967750 | MS.gene25469:CDS | 25.0% |
| ! | ATAACGACAGAAAAATGTAT+CGG | + | chr8.4:42969051-42969070 | MS.gene25469:CDS | 25.0% |
| ! | CAGTTTACATCAAAATTAGA+GGG | + | chr8.4:42968252-42968271 | MS.gene25469:CDS | 25.0% |
| ! | GTTAATGAAATATTCAAACG+AGG | - | chr8.4:42967977-42967996 | None:intergenic | 25.0% |
| ! | TCAGTTTACATCAAAATTAG+AGG | + | chr8.4:42968251-42968270 | MS.gene25469:CDS | 25.0% |
| !! | ATTAATCTTCTTTTCAGTCT+CGG | - | chr8.4:42967623-42967642 | None:intergenic | 25.0% |
| !!! | ACAAAAATGCTAATGGATTT+AGG | + | chr8.4:42967427-42967446 | MS.gene25469:CDS | 25.0% |
| AATTCTTGAGCATAAACAGA+TGG | - | chr8.4:42967454-42967473 | None:intergenic | 30.0% | |
| ACAAATAGTGAAATGAACTC+TGG | - | chr8.4:42968015-42968034 | None:intergenic | 30.0% | |
| ACAACACTCAATGAATCTTT+GGG | - | chr8.4:42967524-42967543 | None:intergenic | 30.0% | |
| ATACGACAAGATTATAAACC+TGG | + | chr8.4:42967912-42967931 | MS.gene25469:CDS | 30.0% | |
| ATTATCTTAAGAAAGCTGAG+AGG | + | chr8.4:42967554-42967573 | MS.gene25469:CDS | 30.0% | |
| GTAGATGATAAACTTCGTAA+GGG | + | chr8.4:42968033-42968052 | MS.gene25469:CDS | 30.0% | |
| GTTCAGTAGTAAACTATACA+AGG | + | chr8.4:42968773-42968792 | MS.gene25469:CDS | 30.0% | |
| TAAGAGATGTCTACAATCAT+TGG | + | chr8.4:42968665-42968684 | MS.gene25469:CDS | 30.0% | |
| TAGAGATATACTGATGTACA+TGG | + | chr8.4:42967225-42967244 | MS.gene25469:CDS | 30.0% | |
| TGTAGATGATAAACTTCGTA+AGG | + | chr8.4:42968032-42968051 | MS.gene25469:CDS | 30.0% | |
| TTAATCCATATGGAGAATTC+TGG | + | chr8.4:42967685-42967704 | MS.gene25469:CDS | 30.0% | |
| ! | CAGCATTATTGAAAAGCATA+AGG | - | chr8.4:42968590-42968609 | None:intergenic | 30.0% |
| ! | CATCTTTTTCTTGCAAGTAT+CGG | - | chr8.4:42968119-42968138 | None:intergenic | 30.0% |
| ! | GAAGTATTATAAACAGCATC+TGG | + | chr8.4:42968146-42968165 | MS.gene25469:CDS | 30.0% |
| ! | TTAATCTTCTTTTCAGTCTC+GGG | - | chr8.4:42967622-42967641 | None:intergenic | 30.0% |
| !! | ACAATCATTGGCTTTAGTTA+AGG | + | chr8.4:42968677-42968696 | MS.gene25469:CDS | 30.0% |
| !! | CAATCATTGGCTTTAGTTAA+GGG | + | chr8.4:42968678-42968697 | MS.gene25469:CDS | 30.0% |
| AAAGCATAAGGACACACATT+TGG | - | chr8.4:42968578-42968597 | None:intergenic | 35.0% | |
| AAATCTATTGAAGCAGCTCA+AGG | + | chr8.4:42967139-42967158 | MS.gene25469:CDS | 35.0% | |
| ACTGGTGAAGTTATTGATAG+AGG | + | chr8.4:42967388-42967407 | MS.gene25469:CDS | 35.0% | |
| CACAACACTCAATGAATCTT+TGG | - | chr8.4:42967525-42967544 | None:intergenic | 35.0% | |
| CAGACTTAAAAGCAACCTTT+GGG | + | chr8.4:42968517-42968536 | MS.gene25469:CDS | 35.0% | |
| CATGCTCAGATTAATCCATA+TGG | + | chr8.4:42967675-42967694 | MS.gene25469:CDS | 35.0% | |
| CTAAACCAGAATTCTCCATA+TGG | - | chr8.4:42967693-42967712 | None:intergenic | 35.0% | |
| CTGGTGAAGTTATTGATAGA+GGG | + | chr8.4:42967389-42967408 | MS.gene25469:CDS | 35.0% | |
| CTTAACAATGAGACTTCTCT+CGG | - | chr8.4:42968211-42968230 | None:intergenic | 35.0% | |
| TACTGATCCTGAAAGATTGA+AGG | + | chr8.4:42967846-42967865 | MS.gene25469:CDS | 35.0% | |
| TAGTGAGGATCATGAAATCT+AGG | + | chr8.4:42968898-42968917 | MS.gene25469:CDS | 35.0% | |
| TCACCAACATCTTTACTCAT+CGG | - | chr8.4:42968726-42968745 | None:intergenic | 35.0% | |
| TCATTTATTCCAACCAGATC+AGG | + | chr8.4:42967320-42967339 | MS.gene25469:CDS | 35.0% | |
| TGCTGATAAACTTAGCTACA+AGG | + | chr8.4:42968605-42968624 | MS.gene25469:CDS | 35.0% | |
| TGTAAACTGATAGCCACATT+CGG | - | chr8.4:42968241-42968260 | None:intergenic | 35.0% | |
| TGTAGACATCTCTTAAGATC+CGG | - | chr8.4:42968660-42968679 | None:intergenic | 35.0% | |
| ! | TCGTATTTTCAAAAGACCGT+CGG | - | chr8.4:42967782-42967801 | None:intergenic | 35.0% |
| ! | TGCTTCACAAATTTGGTGAT+AGG | + | chr8.4:42967065-42967084 | MS.gene25469:CDS | 35.0% |
| ! | TTAAAAGCAACCTTTGGGAA+GGG | + | chr8.4:42968522-42968541 | MS.gene25469:CDS | 35.0% |
| ! | TTCATGAACAGGAGTCTTTT+TGG | - | chr8.4:42967272-42967291 | None:intergenic | 35.0% |
| ! | TTCATTGAGTGTTGTGATTG+TGG | + | chr8.4:42967529-42967548 | MS.gene25469:CDS | 35.0% |
| !! | AAGTTTCGGTCTTATTACCT+TGG | + | chr8.4:42968447-42968466 | MS.gene25469:CDS | 35.0% |
| !! | AGTTTCAGCTGAGTTTTATC+AGG | + | chr8.4:42967492-42967511 | MS.gene25469:CDS | 35.0% |
| AAACTTCGTAAGGGTCTGAA+AGG | + | chr8.4:42968042-42968061 | MS.gene25469:CDS | 40.0% | |
| AACCTGAGAAACAGGAAACT+CGG | + | chr8.4:42968832-42968851 | MS.gene25469:CDS | 40.0% | |
| AACTTCGTAAGGGTCTGAAA+GGG | + | chr8.4:42968043-42968062 | MS.gene25469:CDS | 40.0% | |
| AAGACTCCTGTTCATGAACT+CGG | + | chr8.4:42967274-42967293 | MS.gene25469:CDS | 40.0% | |
| ACTGGATCCTTCAATCTTTC+AGG | - | chr8.4:42967856-42967875 | None:intergenic | 40.0% | |
| ACTTCACACATAAGGGAATC+TGG | + | chr8.4:42967811-42967830 | MS.gene25469:CDS | 40.0% | |
| ACTTGTCATTGTTGAATGCC+AGG | - | chr8.4:42967933-42967952 | None:intergenic | 40.0% | |
| AGGAACTGTAGTTGCACAAA+AGG | + | chr8.4:42968803-42968822 | MS.gene25469:CDS | 40.0% | |
| AGGTGATGACTTCACACATA+AGG | + | chr8.4:42967803-42967822 | MS.gene25469:CDS | 40.0% | |
| ATAAACAGCATCTGGCAAAG+AGG | + | chr8.4:42968154-42968173 | MS.gene25469:CDS | 40.0% | |
| ATTGTCGTGGCAAACTAACA+TGG | + | chr8.4:42968488-42968507 | MS.gene25469:CDS | 40.0% | |
| CAAAGTGCAGATATTTCCAC+CGG | - | chr8.4:42968423-42968442 | None:intergenic | 40.0% | |
| CATAAGGACACACATTTGGT+AGG | - | chr8.4:42968574-42968593 | None:intergenic | 40.0% | |
| GATGAGTAAAGATGTTGGTG+AGG | + | chr8.4:42968725-42968744 | MS.gene25469:CDS | 40.0% | |
| GCAGACTTAAAAGCAACCTT+TGG | + | chr8.4:42968516-42968535 | MS.gene25469:CDS | 40.0% | |
| GGATAGAGTTAGCCATTACA+TGG | + | chr8.4:42967594-42967613 | MS.gene25469:CDS | 40.0% | |
| GGGAAGAAATGTCCTTAGAA+AGG | + | chr8.4:42968698-42968717 | MS.gene25469:CDS | 40.0% | |
| GGTGATGACTTCACACATAA+GGG | + | chr8.4:42967804-42967823 | MS.gene25469:CDS | 40.0% | |
| TACAGACATGAAAACCTCTC+AGG | + | chr8.4:42968281-42968300 | MS.gene25469:CDS | 40.0% | |
| TATTACCTTGGCACACATAC+TGG | + | chr8.4:42968459-42968478 | MS.gene25469:CDS | 40.0% | |
| TGATAGGTTGTACTCAGGAT+TGG | + | chr8.4:42967081-42967100 | MS.gene25469:CDS | 40.0% | |
| TGGAAGAACTGAACAGGAAA+TGG | + | chr8.4:42967173-42967192 | MS.gene25469:CDS | 40.0% | |
| TTAGTACATAGTGAACGCAC+TGG | + | chr8.4:42967370-42967389 | MS.gene25469:CDS | 40.0% | |
| TTGTCGTGGCAAACTAACAT+GGG | + | chr8.4:42968489-42968508 | MS.gene25469:CDS | 40.0% | |
| TTTCCTTGCAAATCCAACAG+AGG | + | chr8.4:42968977-42968996 | MS.gene25469:CDS | 40.0% | |
| ! | ACGAGGAATTCAAAGCATTC+TGG | - | chr8.4:42967960-42967979 | None:intergenic | 40.0% |
| ! | AGTTTCCTGTTTCTCAGGTT+CGG | - | chr8.4:42968832-42968851 | None:intergenic | 40.0% |
| ! | CTTAAAAGCAACCTTTGGGA+AGG | + | chr8.4:42968521-42968540 | MS.gene25469:CDS | 40.0% |
| ! | GAGGCTTTTGTCTGGAAAAA+CGG | + | chr8.4:42968173-42968192 | MS.gene25469:CDS | 40.0% |
| ! | GTGAAATGAACTCTGGAGAA+CGG | - | chr8.4:42968008-42968027 | None:intergenic | 40.0% |
| ! | TCTCATTGAGCGAGACTTTT+TGG | + | chr8.4:42969019-42969038 | MS.gene25469:CDS | 40.0% |
| ! | TGAAATGAACTCTGGAGAAC+GGG | - | chr8.4:42968007-42968026 | None:intergenic | 40.0% |
| ! | TTTGGTGATAGGTTGTACTC+AGG | + | chr8.4:42967076-42967095 | MS.gene25469:CDS | 40.0% |
| !! | CGGTCTTTTGAAAATACGAG+AGG | + | chr8.4:42967783-42967802 | MS.gene25469:CDS | 40.0% |
| !! | CTTTTCTGGAAGAACTGAAC+AGG | + | chr8.4:42967167-42967186 | MS.gene25469:CDS | 40.0% |
| AAGACCCTGTTGTAAGAACC+TGG | - | chr8.4:42968368-42968387 | None:intergenic | 45.0% | |
| ACTGTCCAGGTTCTTACAAC+AGG | + | chr8.4:42968360-42968379 | MS.gene25469:CDS | 45.0% | |
| ACTTCGTAAGGGTCTGAAAG+GGG | + | chr8.4:42968044-42968063 | MS.gene25469:CDS | 45.0% | |
| AGACTCCTGTTCATGAACTC+GGG | + | chr8.4:42967275-42967294 | MS.gene25469:CDS | 45.0% | |
| AGGTTCTTACAACAGGGTCT+TGG | + | chr8.4:42968367-42968386 | MS.gene25469:CDS | 45.0% | |
| ATCCAGTTGAGTTTGTGCAG+AGG | + | chr8.4:42967869-42967888 | MS.gene25469:CDS | 45.0% | |
| ATGCGTTTCTTGACCTCTGT+TGG | - | chr8.4:42968993-42969012 | None:intergenic | 45.0% | |
| ATTCCAACCAGATCAGGACT+CGG | + | chr8.4:42967326-42967345 | MS.gene25469:CDS | 45.0% | |
| CACGTAATACTCGACTGAGT+TGG | - | chr8.4:42968393-42968412 | None:intergenic | 45.0% | |
| CTGCACTTTGCGAGAAGTTT+CGG | + | chr8.4:42968433-42968452 | MS.gene25469:CDS | 45.0% | |
| CTGTCCAGGTTCTTACAACA+GGG | + | chr8.4:42968361-42968380 | MS.gene25469:CDS | 45.0% | |
| GAGCCGATGAGTAAAGATGT+TGG | + | chr8.4:42968720-42968739 | MS.gene25469:CDS | 45.0% | |
| GGATGATGTAGAGGTTACTC+TGG | + | chr8.4:42968074-42968093 | MS.gene25469:CDS | 45.0% | |
| GTTAAGCTCAAGACCGAATG+TGG | + | chr8.4:42968225-42968244 | MS.gene25469:CDS | 45.0% | |
| TCTATTGAAGCAGCTCAAGG+AGG | + | chr8.4:42967142-42967161 | MS.gene25469:CDS | 45.0% | |
| TGACCTCTGTTGGATTTGCA+AGG | - | chr8.4:42968983-42969002 | None:intergenic | 45.0% | |
| TGTAGAGGTTACTCTGGACA+AGG | + | chr8.4:42968080-42968099 | MS.gene25469:CDS | 45.0% | |
| ! | AAATGAACTCTGGAGAACGG+GGG | - | chr8.4:42968005-42968024 | None:intergenic | 45.0% |
| ! | AGCTCAAGGAGGATCTTTTC+TGG | + | chr8.4:42967153-42967172 | MS.gene25469:CDS | 45.0% |
| ! | GAAATGAACTCTGGAGAACG+GGG | - | chr8.4:42968006-42968025 | None:intergenic | 45.0% |
| !! | ACAGGAGTCTTTTTGGCACT+TGG | - | chr8.4:42967265-42967284 | None:intergenic | 45.0% |
| !! | TACTCATCGGCTCCTTTCTA+AGG | - | chr8.4:42968713-42968732 | None:intergenic | 45.0% |
| !! | TGAGCGAGACTTTTTGGAGA+GGG | + | chr8.4:42969025-42969044 | MS.gene25469:CDS | 45.0% |
| !! | TTGAGCGAGACTTTTTGGAG+AGG | + | chr8.4:42969024-42969043 | MS.gene25469:CDS | 45.0% |
| AACCTCTCAGGACACAATGC+AGG | + | chr8.4:42968293-42968312 | MS.gene25469:CDS | 50.0% | |
| ACCTCTCAGGACACAATGCA+GGG | + | chr8.4:42968294-42968313 | MS.gene25469:CDS | 50.0% | |
| AGAACCTGGACAGTAAGCGT+AGG | - | chr8.4:42968354-42968373 | None:intergenic | 50.0% | |
| AGCAACTGAGATTCCTGCTC+CGG | + | chr8.4:42968638-42968657 | MS.gene25469:CDS | 50.0% | |
| AGCCTCTGCACAAACTCAAC+TGG | - | chr8.4:42967874-42967893 | None:intergenic | 50.0% | |
| ATACTGGCAGGAGATTGTCG+TGG | + | chr8.4:42968475-42968494 | MS.gene25469:CDS | 50.0% | |
| ATGAACTCGGGCTGAATCTG+TGG | + | chr8.4:42967287-42967306 | MS.gene25469:CDS | 50.0% | |
| ATGCTTCTGACCCTTCCCAA+AGG | - | chr8.4:42968535-42968554 | None:intergenic | 50.0% | |
| CAGTCTCGGGATCCATGTAA+TGG | - | chr8.4:42967609-42967628 | None:intergenic | 50.0% | |
| CATCTCTTAAGATCCGGAGC+AGG | - | chr8.4:42968654-42968673 | None:intergenic | 50.0% | |
| GAGTATTACGTGCAACCTGC+CGG | + | chr8.4:42968401-42968420 | MS.gene25469:CDS | 50.0% | |
| GGAATCCGAACCTGAGAAAC+AGG | + | chr8.4:42968824-42968843 | MS.gene25469:CDS | 50.0% | |
| GGTCAACGAGGATGATGTAG+AGG | + | chr8.4:42968065-42968084 | MS.gene25469:CDS | 50.0% | |
| TCGGCTACTGAACACACTTC+TGG | + | chr8.4:42967345-42967364 | MS.gene25469:CDS | 50.0% | |
| TTCAGCCCGAGTTCATGAAC+AGG | - | chr8.4:42967283-42967302 | None:intergenic | 50.0% | |
| TTGTTCCGTCGTGTAACCGA+CGG | + | chr8.4:42967763-42967782 | MS.gene25469:CDS | 50.0% | |
| ! | AAAGACCGTCGGTTACACGA+CGG | - | chr8.4:42967771-42967790 | None:intergenic | 50.0% |
| ! | CTGGCAAAGAGGCTTTTGTC+TGG | + | chr8.4:42968165-42968184 | MS.gene25469:CDS | 50.0% |
| ! | GAGGCGTCTGAATGAGGAAA+TGG | + | chr8.4:42967573-42967592 | MS.gene25469:CDS | 50.0% |
| ! | TGCCGAGTTTCCTGTTTCTC+AGG | - | chr8.4:42968837-42968856 | None:intergenic | 50.0% |
| ACCTTGGCACACATACTGGC+AGG | + | chr8.4:42968463-42968482 | MS.gene25469:CDS | 55.0% | |
| ACTATCGCCGCCTCAATCTG+AGG | - | chr8.4:42968882-42968901 | None:intergenic | 55.0% | |
| AGATTGAGGCGGCGATAGTG+AGG | + | chr8.4:42968883-42968902 | MS.gene25469:CDS | 55.0% | |
| CAGGAAGCCTCAGATTGAGG+CGG | + | chr8.4:42968872-42968891 | MS.gene25469:CDS | 55.0% | |
| GGACAGGAAGCCTCAGATTG+AGG | + | chr8.4:42968869-42968888 | MS.gene25469:CDS | 55.0% | |
| GTGCAGATATTTCCACCGGC+AGG | - | chr8.4:42968419-42968438 | None:intergenic | 55.0% | |
| TAGCCGAGTCCTGATCTGGT+TGG | - | chr8.4:42967332-42967351 | None:intergenic | 55.0% | |
| TAGGACCGTCGCCTAAGTCA+GGG | - | chr8.4:42968335-42968354 | None:intergenic | 55.0% | |
| TATGCCAGCCACCCTGACTT+AGG | + | chr8.4:42968321-42968340 | MS.gene25469:CDS | 55.0% | |
| TATTACGTGCAACCTGCCGG+TGG | + | chr8.4:42968404-42968423 | MS.gene25469:CDS | 55.0% | |
| TCAGTAGCCGAGTCCTGATC+TGG | - | chr8.4:42967336-42967355 | None:intergenic | 55.0% | |
| TCCTGCCAGTATGTGTGCCA+AGG | - | chr8.4:42968467-42968486 | None:intergenic | 55.0% | |
| !! | AGCTGAGAGGCGTCTGAATG+AGG | + | chr8.4:42967567-42967586 | MS.gene25469:CDS | 55.0% |
| ACAGGAAACTCGGCAGCGAG+TGG | + | chr8.4:42968842-42968861 | MS.gene25469:CDS | 60.0% | |
| AGCCACCCTGACTTAGGCGA+CGG | + | chr8.4:42968327-42968346 | MS.gene25469:CDS | 60.0% | |
| CGGTCCTACGCTTACTGTCC+AGG | + | chr8.4:42968347-42968366 | MS.gene25469:CDS | 60.0% | |
| GCCCTGCATTGTGTCCTGAG+AGG | - | chr8.4:42968298-42968317 | None:intergenic | 60.0% | |
| GGGTCTGAAAGGGGTCAACG+AGG | + | chr8.4:42968053-42968072 | MS.gene25469:CDS | 60.0% | |
| GTAGGACCGTCGCCTAAGTC+AGG | - | chr8.4:42968336-42968355 | None:intergenic | 60.0% | |
| AACTCGGCAGCGAGTGGAGG+AGG | + | chr8.4:42968848-42968867 | MS.gene25469:CDS | 65.0% | |
| GACCGTCGCCTAAGTCAGGG+TGG | - | chr8.4:42968332-42968351 | None:intergenic | 65.0% | |
| GGAAACTCGGCAGCGAGTGG+AGG | + | chr8.4:42968845-42968864 | MS.gene25469:CDS | 65.0% | |
| GTCGCCTAAGTCAGGGTGGC+TGG | - | chr8.4:42968328-42968347 | None:intergenic | 65.0% | |
| GGCAGCGAGTGGAGGAGGAC+AGG | + | chr8.4:42968853-42968872 | MS.gene25469:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 42967061 | 42969085 | 42967061 | ID=MS.gene25469 |
| chr8.4 | mRNA | 42967061 | 42969085 | 42967061 | ID=MS.gene25469.t1;Parent=MS.gene25469 |
| chr8.4 | exon | 42967061 | 42969085 | 42967061 | ID=MS.gene25469.t1.exon1;Parent=MS.gene25469.t1 |
| chr8.4 | CDS | 42967061 | 42969085 | 42967061 | ID=cds.MS.gene25469.t1;Parent=MS.gene25469.t1 |
| Gene Sequence |
| Protein sequence |
