Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036510.t1 | XP_013458250.1 | 99.9 | 744 | 1 | 0 | 1 | 744 | 1 | 744 | 0.00E+00 | 1483.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036510.t1 | Q94AH6 | 81.8 | 740 | 132 | 1 | 5 | 744 | 2 | 738 | 0.0e+00 | 1244.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036510.t1 | A0A072USG4 | 99.9 | 744 | 1 | 0 | 1 | 744 | 1 | 744 | 0.0e+00 | 1483.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene036510 | MS.gene25471 | PPI |
MS.gene96241 | MS.gene036510 | PPI |
MS.gene036510 | MS.gene002729 | PPI |
MS.gene34691 | MS.gene036510 | PPI |
MS.gene036510 | MS.gene055864 | PPI |
MS.gene35971 | MS.gene036510 | PPI |
MS.gene004416 | MS.gene036510 | PPI |
MS.gene25469 | MS.gene036510 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036510.t1 | MTR_4g119413 | 99.866 | 744 | 1 | 0 | 1 | 744 | 1 | 744 | 0.0 | 1541 |
MS.gene036510.t1 | MTR_2g437390 | 93.127 | 742 | 51 | 0 | 3 | 744 | 1 | 742 | 0.0 | 1438 |
MS.gene036510.t1 | MTR_7g108340 | 78.919 | 740 | 150 | 1 | 5 | 744 | 2 | 735 | 0.0 | 1239 |
MS.gene036510.t1 | MTR_4g119413 | 99.488 | 586 | 3 | 0 | 1 | 586 | 1 | 586 | 0.0 | 1213 |
MS.gene036510.t1 | MTR_8g056030 | 34.133 | 709 | 430 | 12 | 45 | 744 | 51 | 731 | 1.77e-129 | 402 |
MS.gene036510.t1 | MTR_5g039880 | 33.604 | 738 | 437 | 15 | 34 | 744 | 21 | 732 | 1.16e-119 | 376 |
MS.gene036510.t1 | MTR_2g019260 | 33.427 | 715 | 428 | 14 | 41 | 744 | 115 | 792 | 1.63e-119 | 377 |
MS.gene036510.t1 | MTR_6g011700 | 32.615 | 742 | 432 | 13 | 12 | 744 | 23 | 705 | 1.67e-118 | 372 |
MS.gene036510.t1 | MTR_6g011770 | 31.671 | 742 | 439 | 14 | 12 | 744 | 23 | 705 | 1.18e-112 | 357 |
MS.gene036510.t1 | MTR_7g039690 | 33.153 | 739 | 415 | 17 | 34 | 744 | 21 | 708 | 8.49e-112 | 355 |
MS.gene036510.t1 | MTR_7g039660 | 30.718 | 752 | 453 | 17 | 22 | 744 | 8 | 720 | 2.83e-106 | 341 |
MS.gene036510.t1 | MTR_2g019260 | 31.865 | 681 | 418 | 13 | 41 | 710 | 115 | 760 | 9.35e-106 | 340 |
MS.gene036510.t1 | MTR_1g040925 | 33.333 | 612 | 363 | 10 | 141 | 744 | 367 | 941 | 9.46e-92 | 307 |
MS.gene036510.t1 | MTR_1g040925 | 25.182 | 274 | 187 | 4 | 94 | 365 | 102 | 359 | 2.32e-26 | 116 |
MS.gene036510.t1 | MTR_5g039770 | 31.231 | 666 | 399 | 13 | 91 | 744 | 36 | 654 | 4.58e-88 | 291 |
MS.gene036510.t1 | MTR_7g039790 | 30.254 | 747 | 449 | 18 | 11 | 744 | 30 | 717 | 3.20e-85 | 285 |
MS.gene036510.t1 | MTR_1g040995 | 32.755 | 519 | 325 | 8 | 141 | 656 | 367 | 864 | 4.64e-79 | 271 |
MS.gene036510.t1 | MTR_1g040995 | 25.182 | 274 | 187 | 4 | 94 | 365 | 102 | 359 | 1.93e-26 | 116 |
MS.gene036510.t1 | MTR_7g445240 | 29.128 | 745 | 444 | 18 | 11 | 744 | 30 | 701 | 4.98e-77 | 262 |
MS.gene036510.t1 | MTR_4g119490 | 56.000 | 200 | 88 | 0 | 9 | 208 | 5 | 204 | 1.17e-71 | 233 |
MS.gene036510.t1 | MTR_4g119450 | 55.392 | 204 | 87 | 2 | 7 | 208 | 3 | 204 | 3.84e-69 | 226 |
MS.gene036510.t1 | MTR_4g119930 | 53.365 | 208 | 94 | 1 | 1 | 208 | 1 | 205 | 4.30e-63 | 209 |
MS.gene036510.t1 | MTR_4g119422 | 52.036 | 221 | 98 | 3 | 9 | 224 | 3 | 220 | 4.71e-63 | 215 |
MS.gene036510.t1 | MTR_4g119930 | 58.491 | 159 | 63 | 1 | 1 | 159 | 1 | 156 | 1.58e-51 | 177 |
MS.gene036510.t1 | MTR_5g040040 | 34.675 | 323 | 172 | 6 | 429 | 744 | 296 | 586 | 2.24e-45 | 172 |
MS.gene036510.t1 | MTR_4g119930 | 51.592 | 157 | 76 | 0 | 52 | 208 | 1 | 157 | 2.61e-43 | 154 |
MS.gene036510.t1 | MTR_5g039890 | 25.053 | 471 | 300 | 13 | 12 | 448 | 23 | 474 | 4.26e-38 | 149 |
MS.gene036510.t1 | MTR_1g040965 | 40.826 | 218 | 122 | 3 | 534 | 744 | 1 | 218 | 2.68e-37 | 139 |
MS.gene036510.t1 | MTR_3g115680 | 36.598 | 194 | 109 | 4 | 1 | 189 | 1 | 185 | 5.69e-33 | 126 |
MS.gene036510.t1 | MTR_7g039440 | 26.645 | 304 | 198 | 6 | 84 | 382 | 11 | 294 | 9.93e-32 | 126 |
MS.gene036510.t1 | MTR_5g040180 | 26.347 | 334 | 213 | 7 | 61 | 382 | 46 | 358 | 2.72e-31 | 126 |
MS.gene036510.t1 | MTR_7g039680 | 23.810 | 378 | 242 | 9 | 12 | 387 | 23 | 356 | 5.11e-30 | 122 |
MS.gene036510.t1 | MTR_7g039430 | 28.571 | 238 | 164 | 4 | 84 | 319 | 75 | 308 | 1.29e-27 | 115 |
MS.gene036510.t1 | MTR_5g040190 | 28.509 | 228 | 157 | 4 | 94 | 319 | 85 | 308 | 1.52e-27 | 115 |
MS.gene036510.t1 | MTR_4g131910 | 57.831 | 83 | 34 | 1 | 3 | 85 | 1 | 82 | 1.91e-23 | 100 |
MS.gene036510.t1 | MTR_4g131905 | 42.574 | 101 | 46 | 4 | 47 | 147 | 57 | 145 | 1.67e-14 | 71.6 |
MS.gene036510.t1 | MTR_7g039770 | 45.122 | 82 | 45 | 0 | 663 | 744 | 115 | 196 | 2.70e-14 | 72.8 |
MS.gene036510.t1 | MTR_7g445230 | 45.122 | 82 | 45 | 0 | 663 | 744 | 115 | 196 | 2.70e-14 | 72.8 |
MS.gene036510.t1 | MTR_4g082150 | 28.022 | 182 | 121 | 2 | 425 | 598 | 377 | 556 | 6.16e-12 | 69.7 |
MS.gene036510.t1 | MTR_4g082150 | 26.923 | 182 | 123 | 2 | 425 | 598 | 553 | 732 | 8.55e-12 | 69.3 |
MS.gene036510.t1 | MTR_2g018360 | 74.359 | 39 | 10 | 0 | 620 | 658 | 30 | 68 | 2.47e-11 | 60.8 |
MS.gene036510.t1 | MTR_4g082265 | 26.923 | 182 | 123 | 2 | 425 | 598 | 553 | 732 | 2.88e-11 | 67.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene036510.t1 | AT4G02570 | 81.757 | 740 | 132 | 1 | 5 | 744 | 2 | 738 | 0.0 | 1295 |
MS.gene036510.t1 | AT4G02570 | 81.757 | 740 | 132 | 1 | 5 | 744 | 2 | 738 | 0.0 | 1295 |
MS.gene036510.t1 | AT4G02570 | 81.757 | 740 | 132 | 1 | 5 | 744 | 2 | 738 | 0.0 | 1295 |
MS.gene036510.t1 | AT4G02570 | 81.757 | 740 | 132 | 1 | 5 | 744 | 2 | 738 | 0.0 | 1295 |
MS.gene036510.t1 | AT1G02980 | 66.801 | 744 | 243 | 4 | 3 | 744 | 1 | 742 | 0.0 | 1052 |
MS.gene036510.t1 | AT1G02980 | 66.801 | 744 | 243 | 4 | 3 | 744 | 1 | 742 | 0.0 | 1052 |
MS.gene036510.t1 | AT1G43140 | 65.946 | 740 | 221 | 3 | 6 | 744 | 12 | 721 | 0.0 | 1011 |
MS.gene036510.t1 | AT1G59790 | 56.771 | 384 | 145 | 3 | 3 | 384 | 6 | 370 | 2.54e-152 | 448 |
MS.gene036510.t1 | AT1G59790 | 56.720 | 372 | 140 | 3 | 3 | 372 | 6 | 358 | 8.50e-147 | 434 |
MS.gene036510.t1 | AT1G26830 | 34.713 | 749 | 431 | 14 | 12 | 744 | 26 | 732 | 9.11e-135 | 416 |
MS.gene036510.t1 | AT1G69670 | 34.274 | 709 | 429 | 13 | 45 | 744 | 52 | 732 | 3.93e-129 | 401 |
MS.gene036510.t1 | AT1G69670 | 34.274 | 709 | 429 | 13 | 45 | 744 | 52 | 732 | 3.93e-129 | 401 |
MS.gene036510.t1 | AT5G46210 | 34.637 | 716 | 418 | 17 | 41 | 744 | 115 | 792 | 5.85e-112 | 358 |
MS.gene036510.t1 | AT1G59800 | 54.918 | 244 | 106 | 1 | 9 | 252 | 7 | 246 | 4.00e-89 | 280 |
Find 141 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTTCTGACCACTGGTTTC+TGG | 0.096559 | 8.1:-8940935 | MS.gene036510:CDS |
TTCTCGTTTCTTTCACTATT+TGG | 0.127323 | 8.1:-8944777 | MS.gene036510:CDS |
GCTAAGTACTTGAACATATT+TGG | 0.130944 | 8.1:+8939804 | None:intergenic |
TTAGATATATTTGTTGAAAT+TGG | 0.149900 | 8.1:-8944314 | MS.gene036510:CDS |
AATGACTCAGTTAAACTTAT+TGG | 0.163771 | 8.1:-8940432 | MS.gene036510:CDS |
CATGTAGCTCAATCACTTTC+CGG | 0.271035 | 8.1:+8942855 | None:intergenic |
TGAAATTGGAATGGGGAAAA+TGG | 0.276258 | 8.1:-8944300 | MS.gene036510:CDS |
TATGAAGAGTCGGAAAGTTT+TGG | 0.289512 | 8.1:-8940057 | MS.gene036510:CDS |
TAAAATCCCATCCTTGTTCT+AGG | 0.294855 | 8.1:+8947061 | None:intergenic |
AAACTTCCCACTTATGTTAC+AGG | 0.307020 | 8.1:+8940686 | None:intergenic |
ATTCTCGAAAGGCTTCAAAT+TGG | 0.308428 | 8.1:-8944223 | MS.gene036510:CDS |
TGTGGAAAAGAGTGTGATTC+TGG | 0.331752 | 8.1:+8942801 | None:intergenic |
AATCAGGACAAGAATCTTCT+AGG | 0.335743 | 8.1:+8944198 | None:intergenic |
TAGTGAGCCAAAGTTATTAG+AGG | 0.338740 | 8.1:-8944022 | MS.gene036510:intron |
GCTTAAGACGGGAGAAAGAT+AGG | 0.347462 | 8.1:-8944068 | MS.gene036510:CDS |
GCAGTTGGGTCGCATGTTTA+AGG | 0.348970 | 8.1:-8940003 | MS.gene036510:intron |
GACCATTCCTTCCATCTTTG+AGG | 0.353692 | 8.1:+8941159 | None:intergenic |
GTAACTGTTAAGTCTATTCC+AGG | 0.375194 | 8.1:+8940957 | None:intergenic |
TTTGATTTCTCGGGATTACT+TGG | 0.380388 | 8.1:-8939844 | MS.gene036510:CDS |
ACTTACATGGATTTACTCCT+TGG | 0.389503 | 8.1:-8940712 | MS.gene036510:CDS |
TACAGCATCATGTAATCTTC+AGG | 0.394192 | 8.1:+8946976 | None:intergenic |
GTTGGCTTGCTTCCGTGATT+TGG | 0.395108 | 8.1:-8944705 | MS.gene036510:intron |
CTTCCACCTCTTAATGAAGT+TGG | 0.401442 | 8.1:-8944728 | MS.gene036510:CDS |
TTCCACCTCTTAATGAAGTT+GGG | 0.402385 | 8.1:-8944727 | MS.gene036510:CDS |
TGCTTTACTTAGAGATGATA+AGG | 0.405401 | 8.1:-8943735 | MS.gene036510:intron |
AAGACTTGTCAAGGATGTTC+AGG | 0.408359 | 8.1:-8943618 | MS.gene036510:CDS |
TGTGATAACATTCTTAAGAA+AGG | 0.408911 | 8.1:-8942619 | MS.gene036510:CDS |
TTCTAAAATACCCCGTGGCT+TGG | 0.411928 | 8.1:-8943590 | MS.gene036510:CDS |
ATATTTGTTGAAATTGGAAT+GGG | 0.416286 | 8.1:-8944308 | MS.gene036510:CDS |
TCTATTCCAGGGTCTGCATT+AGG | 0.419807 | 8.1:+8940969 | None:intergenic |
TCTCAATCTTCCTGCAGAAA+TGG | 0.424664 | 8.1:-8940892 | MS.gene036510:intron |
TATTGGATGAAGATGTCATT+AGG | 0.425424 | 8.1:-8940415 | MS.gene036510:CDS |
ACCTCTTAATGAAGTTGGGT+TGG | 0.429517 | 8.1:-8944723 | MS.gene036510:CDS |
AGATGCAGCTAGTAACAAAA+AGG | 0.437346 | 8.1:-8943367 | MS.gene036510:intron |
AAGCTCAAGAACATTCTTGA+AGG | 0.438292 | 8.1:-8947021 | MS.gene036510:CDS |
CAGGTTTACAAGGAACTACA+TGG | 0.439895 | 8.1:-8944503 | MS.gene036510:CDS |
AAGAGTGTGATTCTGGAAAC+AGG | 0.442171 | 8.1:+8942808 | None:intergenic |
ACTTGTTTGCCGAGTTCTAC+AGG | 0.445269 | 8.1:-8942374 | MS.gene036510:intron |
AGATCAAAAGATTTATAACT+AGG | 0.445948 | 8.1:+8940912 | None:intergenic |
TGCTTAAATATACTAGAAAC+AGG | 0.455563 | 8.1:+8943565 | None:intergenic |
GAACAAACCTCTAATAACTT+TGG | 0.461535 | 8.1:+8944015 | None:intergenic |
TTCTCATCCACAGGAGGTAG+AGG | 0.465842 | 8.1:+8940146 | None:intergenic |
TATGGAGTGCGTTGAGCAGT+TGG | 0.466660 | 8.1:-8940018 | MS.gene036510:CDS |
GATTGAAGATTTGATTTCTC+GGG | 0.468239 | 8.1:-8939853 | MS.gene036510:CDS |
ATGTCTACAGGCAGAGAAAA+GGG | 0.468308 | 8.1:-8942984 | MS.gene036510:intron |
CTTACATGGATTTACTCCTT+GGG | 0.469426 | 8.1:-8940711 | MS.gene036510:CDS |
GCCAACCCAACTTCATTAAG+AGG | 0.469591 | 8.1:+8944722 | None:intergenic |
TATATTTGTTGAAATTGGAA+TGG | 0.470308 | 8.1:-8944309 | MS.gene036510:CDS |
ATTAAATTCAAAATAATCAG+TGG | 0.477551 | 8.1:+8940322 | None:intergenic |
ATCCAGATTACCATTTCTGC+AGG | 0.478678 | 8.1:+8940882 | None:intergenic |
TGTTTCTAGTATATTTAAGC+AGG | 0.479126 | 8.1:-8943563 | MS.gene036510:intron |
AATGTCTACAGGCAGAGAAA+AGG | 0.480638 | 8.1:-8942985 | MS.gene036510:intron |
CATACCTTGAGCATATAATC+AGG | 0.483000 | 8.1:+8944182 | None:intergenic |
TAAGAGGTGGAAGTGACCTC+CGG | 0.485058 | 8.1:+8944738 | None:intergenic |
GCGCACAATTGAGGCATCAA+TGG | 0.485374 | 8.1:+8940082 | None:intergenic |
AAAGTATAAGATTCTTATCA+AGG | 0.493353 | 8.1:-8940369 | MS.gene036510:CDS |
GGGGTATCAACAGTTAGTTA+TGG | 0.498306 | 8.1:-8940036 | MS.gene036510:CDS |
TCAGGACTGAATTGAGGCTC+AGG | 0.498314 | 8.1:+8946994 | None:intergenic |
GGATTGAAGATTTGATTTCT+CGG | 0.500636 | 8.1:-8939854 | MS.gene036510:CDS |
TTATTATTTACAGGTTTACA+AGG | 0.507125 | 8.1:-8944513 | MS.gene036510:intron |
AATTGAAGAAACTCTTGAAA+AGG | 0.507211 | 8.1:-8942569 | MS.gene036510:intron |
GGAGAATCAAACTAGCTTTG+AGG | 0.511793 | 8.1:-8941009 | MS.gene036510:CDS |
ACAGTTACAGTTCTGACCAC+TGG | 0.512956 | 8.1:-8940942 | MS.gene036510:CDS |
TATCAGCATGTTACCACTGA+AGG | 0.513329 | 8.1:-8943414 | MS.gene036510:intron |
AGCGGCTGAGAATAGTCATT+AGG | 0.516656 | 8.1:+8946800 | None:intergenic |
TACGAGAACTTGTAAAGAGA+TGG | 0.518043 | 8.1:-8944829 | MS.gene036510:CDS |
CTTCATAATGCGCACAATTG+AGG | 0.520124 | 8.1:+8940073 | None:intergenic |
TTCTGCTTATTATTCTCGAA+AGG | 0.520286 | 8.1:-8944234 | MS.gene036510:CDS |
TATTGTTGGTACGCAGGAGC+AGG | 0.520932 | 8.1:-8942960 | MS.gene036510:intron |
ATGGAGTGCGTTGAGCAGTT+GGG | 0.521583 | 8.1:-8940017 | MS.gene036510:CDS |
GCAGAGAAAAGGGATATTGT+TGG | 0.521890 | 8.1:-8942974 | MS.gene036510:CDS |
TCAGGAAGAAGCTTGCTCGC+AGG | 0.522136 | 8.1:-8941264 | MS.gene036510:intron |
GATCATATAGGCTCTTAAAG+AGG | 0.526409 | 8.1:-8942707 | MS.gene036510:intron |
CAAAGTTCACTGACAAAATG+AGG | 0.526696 | 8.1:-8940298 | MS.gene036510:CDS |
CAAAGCACAGAAAACTTACA+TGG | 0.526940 | 8.1:-8940725 | MS.gene036510:CDS |
TGGACCGCTACTTCATTGCC+CGG | 0.528357 | 8.1:-8944757 | MS.gene036510:CDS |
TTGGGTACCTGTAACATAAG+TGG | 0.530949 | 8.1:-8940693 | MS.gene036510:CDS |
TACAGATTTGACGCTGGCAA+AGG | 0.535172 | 8.1:-8941030 | MS.gene036510:CDS |
GCTTGTTGTCACAACCTACC+AGG | 0.542445 | 8.1:-8940646 | MS.gene036510:intron |
TTGTCCTGATTATATGCTCA+AGG | 0.542877 | 8.1:-8944186 | MS.gene036510:intron |
GGCTGAGGAGTGCTTAAGAC+GGG | 0.543587 | 8.1:-8944079 | MS.gene036510:CDS |
CTATAGACCTAGAACAAGGA+TGG | 0.545135 | 8.1:-8947068 | MS.gene036510:CDS |
ATCCCGAGTGCTCTTTCTCA+AGG | 0.548621 | 8.1:+8943762 | None:intergenic |
GCAACATGTCAATGAGTGAA+AGG | 0.550034 | 8.1:-8947095 | None:intergenic |
TACCTCAAAGATGGAAGGAA+TGG | 0.555295 | 8.1:-8941161 | MS.gene036510:intron |
GCTCCTTGAGAAAGAGCACT+CGG | 0.563609 | 8.1:-8943765 | MS.gene036510:CDS |
GCATGTTACCACTGAAGGCA+TGG | 0.566747 | 8.1:-8943409 | MS.gene036510:CDS |
GTAGATTCCTCTACCTCCTG+TGG | 0.567732 | 8.1:-8940153 | MS.gene036510:intron |
TGACAAAATGAGGAGGATCA+AGG | 0.568312 | 8.1:-8940288 | MS.gene036510:intron |
TGGACAGTTTACCTCAAAGA+TGG | 0.570096 | 8.1:-8941170 | MS.gene036510:CDS |
ACTTTGCACATGACAAAGAG+TGG | 0.575661 | 8.1:+8940387 | None:intergenic |
TGAAGAGTACATCGTGTCAA+CGG | 0.578165 | 8.1:-8946753 | MS.gene036510:intron |
ACGAGAACTTGTAAAGAGAT+GGG | 0.578748 | 8.1:-8944828 | MS.gene036510:CDS |
AAGAGGTGGAAGTGACCTCC+GGG | 0.579880 | 8.1:+8944739 | None:intergenic |
AACAGGAGTTCACATATGCC+AGG | 0.580301 | 8.1:+8942825 | None:intergenic |
TAATCTTCAGGACTGAATTG+AGG | 0.582140 | 8.1:+8946988 | None:intergenic |
CTTCAAAATCATTCTCATAG+TGG | 0.584709 | 8.1:+8944276 | None:intergenic |
CTTAAGACGGGAGAAAGATA+GGG | 0.586296 | 8.1:-8944067 | MS.gene036510:CDS |
AAGGGATATTGTTGGTACGC+AGG | 0.588845 | 8.1:-8942966 | MS.gene036510:CDS |
TATTTGTTGAAATTGGAATG+GGG | 0.591338 | 8.1:-8944307 | MS.gene036510:CDS |
ATGGGCGAACCATAAAATCA+TGG | 0.592502 | 8.1:-8944810 | MS.gene036510:CDS |
TGGGTACCTGTAACATAAGT+GGG | 0.595127 | 8.1:-8940692 | MS.gene036510:CDS |
TTGGCTCACTACTAGAGTGC+AGG | 0.595754 | 8.1:+8944034 | None:intergenic |
CTCCTTGAGAAAGAGCACTC+GGG | 0.598786 | 8.1:-8943764 | MS.gene036510:CDS |
TTAAATTCAAAATAATCAGT+GGG | 0.599039 | 8.1:+8940323 | None:intergenic |
TATAGACCTAGAACAAGGAT+GGG | 0.601596 | 8.1:-8947067 | MS.gene036510:CDS |
AGAAACAGGATCCAAGCCAC+GGG | 0.607688 | 8.1:+8943579 | None:intergenic |
AAAGATTGATCAAGAACGCG+AGG | 0.608317 | 8.1:-8944372 | MS.gene036510:intron |
CACCAACGCCATGCCTTCAG+TGG | 0.612973 | 8.1:+8943401 | None:intergenic |
GGCTGAGAATAGTCATTAGG+AGG | 0.613345 | 8.1:+8946803 | None:intergenic |
AGGCTGAGGAGTGCTTAAGA+CGG | 0.615169 | 8.1:-8944080 | MS.gene036510:CDS |
ACCATAAAATCATGGTGAGG+TGG | 0.616474 | 8.1:-8944802 | MS.gene036510:CDS |
ACTGTAACATTACCAAATCA+CGG | 0.617141 | 8.1:+8944693 | None:intergenic |
TCCTTGTACTTGTCATACAG+CGG | 0.620605 | 8.1:+8946782 | None:intergenic |
GGTAAGTGATATAACCTGGT+AGG | 0.620880 | 8.1:+8940632 | None:intergenic |
CAGTTTACCTCAAAGATGGA+AGG | 0.621254 | 8.1:-8941166 | MS.gene036510:CDS |
TAGAAACAGGATCCAAGCCA+CGG | 0.624942 | 8.1:+8943578 | None:intergenic |
GATAACATTCTTAAGAAAGG+AGG | 0.627547 | 8.1:-8942616 | MS.gene036510:CDS |
AATACTCCTAATGCAGACCC+TGG | 0.628370 | 8.1:-8940975 | MS.gene036510:CDS |
TTCAGTGTGAAGACTTGTCA+AGG | 0.628529 | 8.1:-8943627 | MS.gene036510:intron |
TTGTGCGCATTATGAAGAGT+CGG | 0.630462 | 8.1:-8940067 | MS.gene036510:CDS |
GCCGCTGTATGACAAGTACA+AGG | 0.634517 | 8.1:-8946783 | MS.gene036510:CDS |
AGAATAACTCAGTCTATCAG+AGG | 0.636581 | 8.1:+8940460 | None:intergenic |
ACTTATGTTACAGGTACCCA+AGG | 0.636697 | 8.1:+8940695 | None:intergenic |
ACCTCCGGGCAATGAAGTAG+CGG | 0.640019 | 8.1:+8944753 | None:intergenic |
AACCCAACTTCATTAAGAGG+TGG | 0.641652 | 8.1:+8944725 | None:intergenic |
AAATTGAAGCAACAGTGTGG+TGG | 0.641731 | 8.1:-8941190 | MS.gene036510:CDS |
TGAGCTACATGACAAGTACC+TGG | 0.651511 | 8.1:-8942843 | MS.gene036510:CDS |
TACCACTGAAGGCATGGCGT+TGG | 0.656008 | 8.1:-8943403 | MS.gene036510:CDS |
AAGATTGATCAAGAACGCGA+GGG | 0.661144 | 8.1:-8944371 | MS.gene036510:CDS |
AGTTCACTGACAAAATGAGG+AGG | 0.668852 | 8.1:-8940295 | MS.gene036510:CDS |
CCAGGTTACAGATTTGACGC+TGG | 0.681048 | 8.1:-8941036 | MS.gene036510:intron |
AGGTTTACAAGGAACTACAT+GGG | 0.683050 | 8.1:-8944502 | MS.gene036510:CDS |
GCTCGCTTATATTAGTGACA+AGG | 0.684698 | 8.1:-8942397 | MS.gene036510:CDS |
TAACTGTTAAGTCTATTCCA+GGG | 0.696441 | 8.1:+8940958 | None:intergenic |
ACCGCTACTTCATTGCCCGG+AGG | 0.702395 | 8.1:-8944754 | MS.gene036510:CDS |
ACAAAATTGAAGCAACAGTG+TGG | 0.705779 | 8.1:-8941193 | MS.gene036510:CDS |
AAAACTATAGACCTAGAACA+AGG | 0.706435 | 8.1:-8947072 | MS.gene036510:CDS |
CGAACCATAAAATCATGGTG+AGG | 0.707704 | 8.1:-8944805 | MS.gene036510:CDS |
ATAACTAGGCCAGAAACCAG+TGG | 0.715997 | 8.1:+8940926 | None:intergenic |
GAAACAGGATCCAAGCCACG+GGG | 0.759466 | 8.1:+8943580 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 8939800 | 8947112 | 8939800 | ID=MS.gene036510 |
chr8.1 | mRNA | 8939800 | 8947112 | 8939800 | ID=MS.gene036510.t1;Parent=MS.gene036510 |
chr8.1 | exon | 8946973 | 8947112 | 8946973 | ID=MS.gene036510.t1.exon1;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8946973 | 8947112 | 8946973 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8946754 | 8946853 | 8946754 | ID=MS.gene036510.t1.exon2;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8946754 | 8946853 | 8946754 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8944706 | 8944891 | 8944706 | ID=MS.gene036510.t1.exon3;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8944706 | 8944891 | 8944706 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8944475 | 8944522 | 8944475 | ID=MS.gene036510.t1.exon4;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8944475 | 8944522 | 8944475 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8944187 | 8944390 | 8944187 | ID=MS.gene036510.t1.exon5;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8944187 | 8944390 | 8944187 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8944023 | 8944100 | 8944023 | ID=MS.gene036510.t1.exon6;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8944023 | 8944100 | 8944023 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8943736 | 8943825 | 8943736 | ID=MS.gene036510.t1.exon7;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8943736 | 8943825 | 8943736 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8943564 | 8943644 | 8943564 | ID=MS.gene036510.t1.exon8;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8943564 | 8943644 | 8943564 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8943368 | 8943430 | 8943368 | ID=MS.gene036510.t1.exon9;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8943368 | 8943430 | 8943368 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8942961 | 8942996 | 8942961 | ID=MS.gene036510.t1.exon10;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8942961 | 8942996 | 8942961 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8942799 | 8942885 | 8942799 | ID=MS.gene036510.t1.exon11;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8942799 | 8942885 | 8942799 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8942570 | 8942719 | 8942570 | ID=MS.gene036510.t1.exon12;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8942570 | 8942719 | 8942570 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8942375 | 8942430 | 8942375 | ID=MS.gene036510.t1.exon13;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8942375 | 8942430 | 8942375 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8941162 | 8941282 | 8941162 | ID=MS.gene036510.t1.exon14;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8941162 | 8941282 | 8941162 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8940893 | 8941054 | 8940893 | ID=MS.gene036510.t1.exon15;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8940893 | 8941054 | 8940893 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8940647 | 8940790 | 8940647 | ID=MS.gene036510.t1.exon16;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8940647 | 8940790 | 8940647 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8940289 | 8940507 | 8940289 | ID=MS.gene036510.t1.exon17;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8940289 | 8940507 | 8940289 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8940004 | 8940171 | 8940004 | ID=MS.gene036510.t1.exon18;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8940004 | 8940171 | 8940004 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
chr8.1 | exon | 8939800 | 8939901 | 8939800 | ID=MS.gene036510.t1.exon19;Parent=MS.gene036510.t1 |
chr8.1 | CDS | 8939800 | 8939901 | 8939800 | ID=cds.MS.gene036510.t1;Parent=MS.gene036510.t1 |
Gene Sequence |
Protein sequence |