Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004416.t1 | XP_003593912.1 | 99.7 | 749 | 2 | 0 | 23 | 771 | 44 | 792 | 0.00E+00 | 1476.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004416.t1 | Q8LGH4 | 80.9 | 779 | 129 | 3 | 1 | 771 | 26 | 792 | 0.0e+00 | 1229.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004416.t1 | G7IP77 | 99.7 | 749 | 2 | 0 | 23 | 771 | 44 | 792 | 0.0e+00 | 1476.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene004416 | MS.gene055864 | PPI |
MS.gene25469 | MS.gene004416 | PPI |
MS.gene004416 | MS.gene58919 | PPI |
MS.gene004416 | MS.gene35971 | PPI |
MS.gene004416 | MS.gene036510 | PPI |
MS.gene073389 | MS.gene004416 | PPI |
MS.gene004416 | MS.gene25471 | PPI |
MS.gene004416 | MS.gene035311 | PPI |
MS.gene004416 | MS.gene91206 | PPI |
MS.gene041539 | MS.gene004416 | PPI |
MS.gene00337 | MS.gene004416 | PPI |
MS.gene004416 | MS.gene004599 | PPI |
MS.gene004416 | MS.gene34691 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004416.t1 | MTR_2g019260 | 99.741 | 771 | 2 | 0 | 1 | 771 | 22 | 792 | 0.0 | 1596 |
MS.gene004416.t1 | MTR_2g019260 | 99.592 | 735 | 3 | 0 | 1 | 735 | 22 | 756 | 0.0 | 1523 |
MS.gene004416.t1 | MTR_8g056030 | 40.054 | 739 | 410 | 14 | 53 | 771 | 6 | 731 | 1.99e-175 | 521 |
MS.gene004416.t1 | MTR_5g039880 | 40.782 | 716 | 403 | 12 | 70 | 771 | 24 | 732 | 8.54e-172 | 512 |
MS.gene004416.t1 | MTR_6g011700 | 40.027 | 737 | 389 | 16 | 53 | 771 | 4 | 705 | 6.67e-170 | 506 |
MS.gene004416.t1 | MTR_6g011770 | 39.431 | 738 | 392 | 16 | 53 | 771 | 4 | 705 | 2.33e-160 | 482 |
MS.gene004416.t1 | MTR_7g039690 | 39.021 | 715 | 393 | 12 | 70 | 771 | 24 | 708 | 4.08e-158 | 476 |
MS.gene004416.t1 | MTR_7g039660 | 39.130 | 713 | 408 | 14 | 70 | 771 | 23 | 720 | 2.04e-153 | 464 |
MS.gene004416.t1 | MTR_7g108340 | 33.522 | 707 | 424 | 15 | 98 | 771 | 42 | 735 | 4.72e-120 | 378 |
MS.gene004416.t1 | MTR_4g119413 | 33.427 | 715 | 428 | 14 | 94 | 771 | 41 | 744 | 3.61e-119 | 376 |
MS.gene004416.t1 | MTR_2g437390 | 33.333 | 720 | 432 | 14 | 89 | 771 | 34 | 742 | 4.15e-119 | 376 |
MS.gene004416.t1 | MTR_7g039790 | 34.146 | 738 | 439 | 19 | 53 | 771 | 8 | 717 | 5.01e-117 | 370 |
MS.gene004416.t1 | MTR_1g040925 | 38.167 | 600 | 339 | 11 | 186 | 771 | 360 | 941 | 1.86e-116 | 374 |
MS.gene004416.t1 | MTR_1g040925 | 28.723 | 376 | 239 | 10 | 66 | 423 | 25 | 389 | 3.46e-38 | 153 |
MS.gene004416.t1 | MTR_5g039770 | 35.870 | 644 | 371 | 17 | 143 | 771 | 38 | 654 | 6.22e-111 | 352 |
MS.gene004416.t1 | MTR_7g445240 | 33.424 | 736 | 431 | 20 | 53 | 771 | 8 | 701 | 1.25e-109 | 350 |
MS.gene004416.t1 | MTR_1g040995 | 39.020 | 510 | 298 | 8 | 186 | 684 | 360 | 867 | 3.54e-105 | 343 |
MS.gene004416.t1 | MTR_1g040995 | 28.723 | 376 | 239 | 10 | 66 | 423 | 25 | 389 | 3.32e-38 | 153 |
MS.gene004416.t1 | MTR_4g119413 | 30.922 | 553 | 340 | 12 | 94 | 611 | 41 | 586 | 1.37e-76 | 260 |
MS.gene004416.t1 | MTR_5g040040 | 39.410 | 373 | 179 | 10 | 407 | 771 | 253 | 586 | 1.27e-63 | 223 |
MS.gene004416.t1 | MTR_5g039890 | 30.901 | 466 | 258 | 10 | 53 | 461 | 4 | 462 | 5.33e-63 | 219 |
MS.gene004416.t1 | MTR_1g040965 | 44.231 | 208 | 111 | 4 | 569 | 771 | 11 | 218 | 2.79e-46 | 164 |
MS.gene004416.t1 | MTR_5g040180 | 30.894 | 369 | 233 | 10 | 67 | 421 | 9 | 369 | 7.13e-44 | 162 |
MS.gene004416.t1 | MTR_7g039680 | 29.315 | 365 | 226 | 7 | 53 | 406 | 4 | 347 | 1.02e-42 | 159 |
MS.gene004416.t1 | MTR_5g040190 | 31.546 | 317 | 197 | 9 | 72 | 376 | 13 | 321 | 5.74e-40 | 151 |
MS.gene004416.t1 | MTR_7g039430 | 31.661 | 319 | 194 | 9 | 72 | 376 | 13 | 321 | 1.73e-39 | 150 |
MS.gene004416.t1 | MTR_7g039440 | 32.423 | 293 | 181 | 7 | 141 | 421 | 18 | 305 | 8.10e-39 | 146 |
MS.gene004416.t1 | MTR_7g039380 | 29.703 | 202 | 134 | 5 | 67 | 264 | 9 | 206 | 2.13e-24 | 102 |
MS.gene004416.t1 | MTR_5g040230 | 29.012 | 162 | 110 | 3 | 105 | 264 | 109 | 267 | 6.15e-19 | 88.2 |
MS.gene004416.t1 | MTR_7g039770 | 47.778 | 90 | 35 | 2 | 684 | 771 | 117 | 196 | 7.26e-15 | 74.3 |
MS.gene004416.t1 | MTR_7g445230 | 47.778 | 90 | 35 | 2 | 684 | 771 | 117 | 196 | 7.26e-15 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene004416.t1 | AT5G46210 | 80.873 | 779 | 129 | 3 | 1 | 771 | 26 | 792 | 0.0 | 1273 |
MS.gene004416.t1 | AT1G26830 | 40.460 | 739 | 413 | 13 | 50 | 771 | 4 | 732 | 1.76e-180 | 535 |
MS.gene004416.t1 | AT1G69670 | 39.674 | 736 | 423 | 12 | 50 | 771 | 4 | 732 | 9.08e-180 | 533 |
MS.gene004416.t1 | AT1G69670 | 39.674 | 736 | 423 | 12 | 50 | 771 | 4 | 732 | 9.08e-180 | 533 |
MS.gene004416.t1 | AT4G02570 | 32.794 | 741 | 446 | 16 | 72 | 771 | 9 | 738 | 3.11e-123 | 387 |
MS.gene004416.t1 | AT4G02570 | 32.794 | 741 | 446 | 16 | 72 | 771 | 9 | 738 | 3.11e-123 | 387 |
MS.gene004416.t1 | AT4G02570 | 32.794 | 741 | 446 | 16 | 72 | 771 | 9 | 738 | 3.11e-123 | 387 |
MS.gene004416.t1 | AT4G02570 | 32.794 | 741 | 446 | 16 | 72 | 771 | 9 | 738 | 3.11e-123 | 387 |
MS.gene004416.t1 | AT1G02980 | 30.780 | 744 | 455 | 18 | 75 | 771 | 12 | 742 | 1.26e-106 | 343 |
MS.gene004416.t1 | AT1G02980 | 30.780 | 744 | 455 | 18 | 75 | 771 | 12 | 742 | 1.26e-106 | 343 |
MS.gene004416.t1 | AT1G43140 | 30.352 | 738 | 442 | 18 | 72 | 771 | 18 | 721 | 8.27e-95 | 311 |
MS.gene004416.t1 | AT4G12100 | 33.046 | 348 | 203 | 9 | 73 | 406 | 79 | 410 | 4.26e-50 | 182 |
MS.gene004416.t1 | AT3G46910 | 35.745 | 235 | 127 | 6 | 60 | 276 | 16 | 244 | 1.84e-32 | 126 |
MS.gene004416.t1 | AT1G59790 | 25.610 | 328 | 220 | 11 | 97 | 408 | 47 | 366 | 1.26e-18 | 89.0 |
MS.gene004416.t1 | AT1G59790 | 25.237 | 317 | 213 | 11 | 97 | 397 | 47 | 355 | 7.12e-16 | 80.9 |
MS.gene004416.t1 | AT2G04660 | 26.000 | 200 | 142 | 2 | 444 | 638 | 537 | 735 | 1.21e-11 | 68.9 |
MS.gene004416.t1 | AT1G59800 | 27.358 | 212 | 133 | 9 | 98 | 298 | 43 | 244 | 4.41e-11 | 64.7 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAATCCCTTCTTGAATTTA+AGG | 0.088937 | 2.3:+67324981 | MS.gene004416:CDS |
TGATCTTTGCATTCATAAAA+TGG | 0.127842 | 2.3:+67317842 | MS.gene004416:CDS |
GTTGGCTGTCTCCCTATTTC+AGG | 0.192113 | 2.3:+67328532 | MS.gene004416:CDS |
CACCAAATATACGGTCAATA+TGG | 0.199641 | 2.3:+67318060 | MS.gene004416:CDS |
TCCCATATTGACCGTATATT+TGG | 0.202482 | 2.3:-67318062 | None:intergenic |
TCGTGGTATAGCCTTGTTTC+TGG | 0.208174 | 2.3:+67318016 | MS.gene004416:CDS |
TTTAAATCAGCTGGTTTAAT+AGG | 0.212702 | 2.3:-67330520 | None:intergenic |
TTGAAAGGCAAACCTGAAAT+AGG | 0.216829 | 2.3:-67328544 | None:intergenic |
TAAACTTCGTGCGGGTAATA+AGG | 0.224990 | 2.3:+67326528 | MS.gene004416:CDS |
ATAGGGTTTCTCTATGCTTA+TGG | 0.229023 | 2.3:+67324810 | MS.gene004416:intron |
ATGCTCAAATGCGTCTTTAA+TGG | 0.244930 | 2.3:-67325061 | None:intergenic |
TGTCTTGTCTTCAAAATTAC+TGG | 0.258979 | 2.3:-67317607 | None:intergenic |
CGGCGGCGCCGCCTCTAATA+TGG | 0.266801 | 2.3:+67316252 | MS.gene004416:CDS |
TTTCCAAGATCGTCAATATC+AGG | 0.294842 | 2.3:+67329221 | MS.gene004416:CDS |
CAAGCTGGAAGGAATGTTTA+AGG | 0.300663 | 2.3:+67326993 | MS.gene004416:CDS |
ATCTGCAGCACTGCAGTCTT+TGG | 0.301773 | 2.3:+67317911 | MS.gene004416:CDS |
GTTAAAGATGTTTACTGCTC+TGG | 0.301775 | 2.3:+67323993 | MS.gene004416:CDS |
CCTGATTGACAGAGAATATC+TGG | 0.307979 | 2.3:+67330558 | MS.gene004416:CDS |
GATAGAAATACAATCAAATC+TGG | 0.313580 | 2.3:-67317945 | None:intergenic |
CGCCCCTCTTTACCGTATAA+AGG | 0.325505 | 2.3:+67328961 | MS.gene004416:CDS |
CGACTTGGAGAAGCTTTATC+AGG | 0.336314 | 2.3:+67317686 | MS.gene004416:CDS |
ATGGGTATTGTACCTTTATA+CGG | 0.337851 | 2.3:-67328973 | None:intergenic |
CTTTGGGAAAATCTGCCTTT+AGG | 0.342861 | 2.3:-67328499 | None:intergenic |
AGCCTTCACCTTGGAGATCA+TGG | 0.344264 | 2.3:-67326854 | None:intergenic |
CTCATGTGGCAAAATTCTTT+AGG | 0.360455 | 2.3:+67328467 | MS.gene004416:CDS |
TCTCCTGATGTATGAACTAA+TGG | 0.362057 | 2.3:-67324911 | None:intergenic |
CTTCCAGCTTGTTTGTGAAC+TGG | 0.365773 | 2.3:-67326981 | None:intergenic |
GTTCAACACAAAACTGTTAC+TGG | 0.371377 | 2.3:+67318131 | MS.gene004416:CDS |
CAAAATTACTGGGCACTGTT+GGG | 0.381314 | 2.3:-67317596 | None:intergenic |
AGTGTTCATGTCTTGACAAC+AGG | 0.383366 | 2.3:+67328152 | MS.gene004416:CDS |
CTTGCTAAAAGACTACTCTT+AGG | 0.384308 | 2.3:+67326802 | MS.gene004416:CDS |
TGAAAGGCAAACCTGAAATA+GGG | 0.385978 | 2.3:-67328543 | None:intergenic |
TATACCTGCCATTCTTGATA+AGG | 0.387173 | 2.3:+67324701 | MS.gene004416:CDS |
TCCACATGCTTCAAGTAATC+TGG | 0.392688 | 2.3:-67324111 | None:intergenic |
TAACCTGATATTGACGATCT+TGG | 0.398987 | 2.3:-67329224 | None:intergenic |
AACTGGACAGGGCATTGTTA+TGG | 0.399445 | 2.3:+67324933 | MS.gene004416:CDS |
TACTTCAGAAGAGGAATTAG+AGG | 0.402971 | 2.3:+67326552 | MS.gene004416:CDS |
AGAGCAAGTGCATTCTTTGA+AGG | 0.402989 | 2.3:-67324852 | None:intergenic |
CCAGATATTCTCTGTCAATC+AGG | 0.410647 | 2.3:-67330558 | None:intergenic |
AAACTTCGTGCGGGTAATAA+GGG | 0.411117 | 2.3:+67326529 | MS.gene004416:CDS |
TGAAACAATCACCAAATATA+CGG | 0.427214 | 2.3:+67318051 | MS.gene004416:CDS |
ACCAAATATACGGTCAATAT+GGG | 0.435228 | 2.3:+67318061 | MS.gene004416:CDS |
ACTAAGCTTTCAAGATATCA+AGG | 0.436910 | 2.3:+67328695 | MS.gene004416:CDS |
TTCTCCAAGTCGCAGGAGTC+GGG | 0.437514 | 2.3:-67317675 | None:intergenic |
AAAAGTTCGTGTTCTACAAA+AGG | 0.437752 | 2.3:+67328776 | MS.gene004416:CDS |
AACCAGCTGATTTAAAGAAA+AGG | 0.437814 | 2.3:+67330527 | MS.gene004416:CDS |
AGGCGGCGCCGCCGCGAGGA+AGG | 0.440714 | 2.3:-67316243 | None:intergenic |
GATCTTTGCATTCATAAAAT+GGG | 0.446839 | 2.3:+67317843 | MS.gene004416:CDS |
TTAAAGATGTTTACTGCTCT+GGG | 0.447364 | 2.3:+67323994 | MS.gene004416:CDS |
ATGAATGCAAAGATCATTGA+CGG | 0.448526 | 2.3:-67317835 | None:intergenic |
CAAGATATCAAGGATTCTAC+TGG | 0.452433 | 2.3:+67328705 | MS.gene004416:CDS |
TCAAAATTACTGGGCACTGT+TGG | 0.453025 | 2.3:-67317597 | None:intergenic |
AGTTCATACATCAGGAGAAC+TGG | 0.453158 | 2.3:+67324916 | MS.gene004416:CDS |
TCTTCCACATCTCTACCCTT+TGG | 0.458927 | 2.3:-67328905 | None:intergenic |
TCATGAATTGAATGTTTACC+AGG | 0.462056 | 2.3:+67328296 | MS.gene004416:CDS |
AGAAGCTTCTTAGCAGGTTG+AGG | 0.465867 | 2.3:-67316307 | None:intergenic |
TGAAAGATGTTTGATCTACT+TGG | 0.468770 | 2.3:+67324620 | MS.gene004416:CDS |
TACGAATGATTGACAGTGAA+AGG | 0.468836 | 2.3:+67318159 | MS.gene004416:CDS |
AAAATTCAGATGTACATTCA+AGG | 0.475948 | 2.3:-67324047 | None:intergenic |
TTTAGGTCACTGTGTCCTAA+AGG | 0.476864 | 2.3:+67328484 | MS.gene004416:CDS |
GAGATTAGCAGCCATATTAG+AGG | 0.491945 | 2.3:-67316263 | None:intergenic |
TACCACGAATCATCAACATT+TGG | 0.492711 | 2.3:-67318001 | None:intergenic |
AGGCTGCTCTTGACACAACA+TGG | 0.497636 | 2.3:+67325001 | MS.gene004416:CDS |
TTGATGAGAAGCTTCTTAGC+AGG | 0.505221 | 2.3:-67316313 | None:intergenic |
GCAGCACTGCAGTCTTTGGT+TGG | 0.507190 | 2.3:+67317915 | MS.gene004416:CDS |
GTACCTTTATACGGTAAAGA+GGG | 0.508391 | 2.3:-67328964 | None:intergenic |
CTTCTCCAAGTCGCAGGAGT+CGG | 0.508524 | 2.3:-67317676 | None:intergenic |
GGTGAATGCAATTCAGTTGA+AGG | 0.508957 | 2.3:+67329161 | MS.gene004416:intron |
AAAGGGCAAGGATGTGTTTG+AGG | 0.509726 | 2.3:+67326762 | MS.gene004416:intron |
AGGCCATTAGTTCATACATC+AGG | 0.510040 | 2.3:+67324908 | MS.gene004416:CDS |
TCTTTATCAACGGATTGAAA+AGG | 0.513524 | 2.3:+67317872 | MS.gene004416:CDS |
AACTTGGCAATCAACTCTGC+AGG | 0.515108 | 2.3:-67326496 | None:intergenic |
CATGTATTTCACACCTTCAG+AGG | 0.516247 | 2.3:-67324073 | None:intergenic |
AGGTTTGAGATCGTCGTCCA+TGG | 0.517197 | 2.3:-67316215 | None:intergenic |
GCAACCCGACTCCTGCGACT+TGG | 0.518198 | 2.3:+67317671 | MS.gene004416:CDS |
TGTACCTTTATACGGTAAAG+AGG | 0.518229 | 2.3:-67328965 | None:intergenic |
TGGGGTAAATATACTATGCC+AGG | 0.519045 | 2.3:-67330615 | None:intergenic |
TGCCCTTGAGTCATTGAGGC+AGG | 0.519952 | 2.3:+67324888 | MS.gene004416:CDS |
ATGAGGAAGTCTGACATCCA+TGG | 0.522877 | 2.3:-67328277 | None:intergenic |
ATACATCAGGAGAACTGGAC+AGG | 0.527967 | 2.3:+67324921 | MS.gene004416:CDS |
GCGAGAACAAAACTCCCATC+AGG | 0.529523 | 2.3:+67328119 | MS.gene004416:CDS |
CACTCATTTCAATGCCTGAT+GGG | 0.530176 | 2.3:-67328133 | None:intergenic |
TCAGATGTACATTCAAGGAA+TGG | 0.531912 | 2.3:-67324042 | None:intergenic |
TATCTCTAGTCGAGAGATGT+TGG | 0.533357 | 2.3:+67317964 | MS.gene004416:CDS |
TTGTGAGGATAATGAAAACT+AGG | 0.536734 | 2.3:+67330087 | MS.gene004416:CDS |
GAGCAAAACCTTATCAAGAA+TGG | 0.537185 | 2.3:-67324709 | None:intergenic |
AAAACCTTATCAAGAATGGC+AGG | 0.537415 | 2.3:-67324705 | None:intergenic |
CTTTGCATTCATAAAATGGG+TGG | 0.540904 | 2.3:+67317846 | MS.gene004416:CDS |
GCATCTTATCAATCTCCGTC+AGG | 0.543130 | 2.3:+67325080 | MS.gene004416:CDS |
AGCTTCTTAGCAGGTTGAGG+AGG | 0.543443 | 2.3:-67316304 | None:intergenic |
GTCGAAAACGACGTCGTCGA+AGG | 0.545566 | 2.3:-67316188 | None:intergenic |
ATCCTTCAGACAGTCATCCC+AGG | 0.545646 | 2.3:+67328097 | MS.gene004416:CDS |
GCCAGGTAATTGTATACTTG+CGG | 0.547790 | 2.3:-67330598 | None:intergenic |
CGCCTGGGATGACTGTCTGA+AGG | 0.549291 | 2.3:-67328099 | None:intergenic |
GAGCAGCCTTAAATTCAAGA+AGG | 0.550464 | 2.3:-67324987 | None:intergenic |
GGGCACACTTGATAAAGTCC+TGG | 0.550472 | 2.3:+67326573 | MS.gene004416:CDS |
GGCGCCGCCGCGAGGAAGGT+CGG | 0.550677 | 2.3:-67316239 | None:intergenic |
AGCAGCCTTAAATTCAAGAA+GGG | 0.554319 | 2.3:-67324986 | None:intergenic |
GTCTTGTCTTCAAAATTACT+GGG | 0.555479 | 2.3:-67317606 | None:intergenic |
ATAGAAATACAATCAAATCT+GGG | 0.555611 | 2.3:-67317944 | None:intergenic |
GGTTTCTCTATGCTTATGGA+TGG | 0.557005 | 2.3:+67324814 | MS.gene004416:CDS |
GACCAAATGTTGATGATTCG+TGG | 0.557183 | 2.3:+67317999 | MS.gene004416:CDS |
TGGCCTGCCTCAATGACTCA+AGG | 0.558373 | 2.3:-67324891 | None:intergenic |
CAGTAAACATCTTTAACAGA+TGG | 0.561133 | 2.3:-67323987 | None:intergenic |
ATCTGAGCAAATACAGTGGA+AGG | 0.561281 | 2.3:+67328441 | MS.gene004416:CDS |
TTTGCAGACAAGATTGCAAG+AGG | 0.563201 | 2.3:+67324593 | MS.gene004416:intron |
ATAAAGCTTCTCCAAGTCGC+AGG | 0.568208 | 2.3:-67317682 | None:intergenic |
TCTAGTCGAGAGATGTTGGC+AGG | 0.568237 | 2.3:+67317968 | MS.gene004416:CDS |
TTCCAGATTAGGTGAAGCAG+TGG | 0.570830 | 2.3:+67323948 | MS.gene004416:intron |
TTTGCATTCATAAAATGGGT+GGG | 0.576229 | 2.3:+67317847 | MS.gene004416:CDS |
ATATGGCTGCTAATCTCGCT+CGG | 0.576271 | 2.3:+67316269 | MS.gene004416:CDS |
ACAGGGCATTGTTATGGATG+AGG | 0.579098 | 2.3:+67324939 | MS.gene004416:CDS |
ACATCCATGGGTGGATATGT+TGG | 0.581084 | 2.3:-67328264 | None:intergenic |
ACACTCATTTCAATGCCTGA+TGG | 0.581343 | 2.3:-67328134 | None:intergenic |
AACATGCAACAGATGCCAAA+GGG | 0.584238 | 2.3:+67328890 | MS.gene004416:intron |
TTGGATGATAAACTTCGTGC+GGG | 0.584415 | 2.3:+67326520 | MS.gene004416:CDS |
CCGCCGCGAGGAAGGTCGGT+AGG | 0.585444 | 2.3:-67316235 | None:intergenic |
TAGCCAGTTCACAAACAAGC+TGG | 0.586128 | 2.3:+67326978 | MS.gene004416:CDS |
TATACGGTCAATATGGGACA+TGG | 0.587653 | 2.3:+67318067 | MS.gene004416:CDS |
TGAGGAAGTCTGACATCCAT+GGG | 0.588123 | 2.3:-67328276 | None:intergenic |
TGGGTGGGAATCTTTATCAA+CGG | 0.595371 | 2.3:+67317862 | MS.gene004416:CDS |
TAATAAGGGTACTTCAGAAG+AGG | 0.602012 | 2.3:+67326543 | MS.gene004416:CDS |
TGACAGAGAATATCTGGAGA+GGG | 0.603733 | 2.3:+67330564 | MS.gene004416:CDS |
GGCCTGCCTCAATGACTCAA+GGG | 0.604534 | 2.3:-67324890 | None:intergenic |
ATCTTGGAAAACTCTTTCTG+TGG | 0.605393 | 2.3:-67329208 | None:intergenic |
TCCAGATTACTTGAAGCATG+TGG | 0.612759 | 2.3:+67324110 | MS.gene004416:CDS |
CTGGCCAACATATCCACCCA+TGG | 0.617052 | 2.3:+67328260 | MS.gene004416:CDS |
TCGAAGACAAGGAACTGAGA+AGG | 0.619324 | 2.3:+67328730 | MS.gene004416:CDS |
TCCGCAAGTATACAATTACC+TGG | 0.622714 | 2.3:+67330597 | MS.gene004416:CDS |
GTGTTCATGTCTTGACAACA+GGG | 0.623106 | 2.3:+67328153 | MS.gene004416:CDS |
TCAATGCCCTTGAGTCATTG+AGG | 0.623443 | 2.3:+67324884 | MS.gene004416:CDS |
CAGTTCACAAACAAGCTGGA+AGG | 0.623690 | 2.3:+67326982 | MS.gene004416:CDS |
GATGCCAAAGGGTAGAGATG+TGG | 0.624974 | 2.3:+67328901 | MS.gene004416:intron |
TTTGGATGATAAACTTCGTG+CGG | 0.625081 | 2.3:+67326519 | MS.gene004416:CDS |
ACAGTGGAAGGCGTCTCATG+TGG | 0.625966 | 2.3:+67328453 | MS.gene004416:CDS |
TGGTAAACATTCAATTCATG+AGG | 0.627301 | 2.3:-67328294 | None:intergenic |
TTAGAGGCGGCGCCGCCGCG+AGG | 0.627743 | 2.3:-67316247 | None:intergenic |
GAACATGCAACAGATGCCAA+AGG | 0.630147 | 2.3:+67328889 | MS.gene004416:intron |
TCAGTTGAAGGAGACAGTAG+AGG | 0.631451 | 2.3:+67329173 | MS.gene004416:CDS |
TTCTACTGGTATCGAAGACA+AGG | 0.634091 | 2.3:+67328719 | MS.gene004416:CDS |
TACCTTTATACGGTAAAGAG+GGG | 0.638692 | 2.3:-67328963 | None:intergenic |
ACTCTGCAATCACTTGCATG+TGG | 0.641153 | 2.3:+67328753 | MS.gene004416:CDS |
GAATGAACCTGAATAAAACC+AGG | 0.646175 | 2.3:-67326591 | None:intergenic |
CTTCTCATCAAGCTCCACAA+AGG | 0.647325 | 2.3:+67316325 | MS.gene004416:CDS |
AGATTACTTGAAGCATGTGG+AGG | 0.650956 | 2.3:+67324113 | MS.gene004416:CDS |
GGAGAAATCCATGATCTCCA+AGG | 0.653599 | 2.3:+67326846 | MS.gene004416:CDS |
TGGCAATCAACTCTGCAGGT+CGG | 0.662336 | 2.3:-67326492 | None:intergenic |
TTGACAGAGAATATCTGGAG+AGG | 0.663051 | 2.3:+67330563 | MS.gene004416:CDS |
GGCTGCTCTTGACACAACAT+GGG | 0.668657 | 2.3:+67325002 | MS.gene004416:CDS |
ATATGTTCTATCCAGAAACA+AGG | 0.671464 | 2.3:-67318027 | None:intergenic |
ATACGGTCAATATGGGACAT+GGG | 0.673693 | 2.3:+67318068 | MS.gene004416:CDS |
ACTTCAGAAGAGGAATTAGA+GGG | 0.675328 | 2.3:+67326553 | MS.gene004416:CDS |
TGAGGAGAAAGATAAAGACA+TGG | 0.677344 | 2.3:+67324957 | MS.gene004416:CDS |
TTCTATCTGAGCAAATACAG+TGG | 0.683202 | 2.3:+67328437 | MS.gene004416:CDS |
TACATCAGGAGAACTGGACA+GGG | 0.684375 | 2.3:+67324922 | MS.gene004416:CDS |
AGAGTGAGAAATGACCTTTG+TGG | 0.684737 | 2.3:-67316339 | None:intergenic |
AAAGAGTGCTTCAATTGACG+CGG | 0.692090 | 2.3:+67326825 | MS.gene004416:CDS |
CTTTATACGGTAAAGAGGGG+CGG | 0.695442 | 2.3:-67328960 | None:intergenic |
ATTAGCAGCCATATTAGAGG+CGG | 0.711323 | 2.3:-67316260 | None:intergenic |
GGAAGTCTGACATCCATGGG+TGG | 0.712438 | 2.3:-67328273 | None:intergenic |
AGGTCGATGCTGCTATTGTG+AGG | 0.737367 | 2.3:+67330072 | MS.gene004416:intron |
AAACCTACCGACCTTCCTCG+CGG | 0.739045 | 2.3:+67316232 | MS.gene004416:CDS |
ATGCAGTTGAAGACTGAGTG+TGG | 0.742853 | 2.3:+67326955 | MS.gene004416:intron |
CCTACCGACCTTCCTCGCGG+CGG | 0.754969 | 2.3:+67316235 | MS.gene004416:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 67316163 | 67330624 | 67316163 | ID=MS.gene004416 |
chr2.3 | mRNA | 67316163 | 67330624 | 67316163 | ID=MS.gene004416.t1;Parent=MS.gene004416 |
chr2.3 | exon | 67316163 | 67316346 | 67316163 | ID=MS.gene004416.t1.exon1;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67316163 | 67316346 | 67316163 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67317592 | 67317707 | 67317592 | ID=MS.gene004416.t1.exon2;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67317592 | 67317707 | 67317592 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67317834 | 67318180 | 67317834 | ID=MS.gene004416.t1.exon3;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67317834 | 67318180 | 67317834 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67323954 | 67324134 | 67323954 | ID=MS.gene004416.t1.exon4;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67323954 | 67324134 | 67323954 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67324600 | 67324722 | 67324600 | ID=MS.gene004416.t1.exon5;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67324600 | 67324722 | 67324600 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67324814 | 67325101 | 67324814 | ID=MS.gene004416.t1.exon6;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67324814 | 67325101 | 67324814 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67326490 | 67326615 | 67326490 | ID=MS.gene004416.t1.exon7;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67326490 | 67326615 | 67326490 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67326766 | 67326867 | 67326766 | ID=MS.gene004416.t1.exon8;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67326766 | 67326867 | 67326766 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67326961 | 67327014 | 67326961 | ID=MS.gene004416.t1.exon9;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67326961 | 67327014 | 67326961 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67328068 | 67328174 | 67328068 | ID=MS.gene004416.t1.exon10;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67328068 | 67328174 | 67328068 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67328257 | 67328317 | 67328257 | ID=MS.gene004416.t1.exon11;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67328257 | 67328317 | 67328257 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67328422 | 67328553 | 67328422 | ID=MS.gene004416.t1.exon12;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67328422 | 67328553 | 67328422 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67328660 | 67328797 | 67328660 | ID=MS.gene004416.t1.exon13;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67328660 | 67328797 | 67328660 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67328902 | 67328982 | 67328902 | ID=MS.gene004416.t1.exon14;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67328902 | 67328982 | 67328902 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67329162 | 67329242 | 67329162 | ID=MS.gene004416.t1.exon15;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67329162 | 67329242 | 67329162 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67330074 | 67330154 | 67330074 | ID=MS.gene004416.t1.exon16;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67330074 | 67330154 | 67330074 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
chr2.3 | exon | 67330511 | 67330624 | 67330511 | ID=MS.gene004416.t1.exon17;Parent=MS.gene004416.t1 |
chr2.3 | CDS | 67330511 | 67330624 | 67330511 | ID=cds.MS.gene004416.t1;Parent=MS.gene004416.t1 |
Gene Sequence |
Protein sequence |