Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69940.t1 | XP_013468980.1 | 96.8 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 1.60E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69940.t1 | O24407 | 66.0 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 2.9e-78 | 293.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69940.t1 | A0A072VMG8 | 96.8 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 1.1e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene69940.t1 | TR | AUX/IAA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene69940 | 0.808561 | 2.91E-50 | -1.69E-46 |
| MS.gene050762 | MS.gene69940 | 0.81601 | 6.89E-52 | -1.69E-46 |
| MS.gene050763 | MS.gene69940 | 0.813859 | 2.07E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene69940 | 0.815678 | 8.17E-52 | -1.69E-46 |
| MS.gene050826 | MS.gene69940 | 0.81446 | 1.52E-51 | -1.69E-46 |
| MS.gene051102 | MS.gene69940 | 0.802751 | 4.83E-49 | -1.69E-46 |
| MS.gene052673 | MS.gene69940 | -0.825983 | 3.48E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene69940 | 0.820869 | 5.46E-53 | -1.69E-46 |
| MS.gene054468 | MS.gene69940 | 0.809806 | 1.58E-50 | -1.69E-46 |
| MS.gene055469 | MS.gene69940 | 0.820816 | 5.62E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene69940 | 0.814676 | 1.36E-51 | -1.69E-46 |
| MS.gene05604 | MS.gene69940 | 0.825029 | 5.86E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene69940 | 0.804132 | 2.50E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene69940 | 0.818283 | 2.13E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene69940 | 0.826064 | 3.33E-54 | -1.69E-46 |
| MS.gene059439 | MS.gene69940 | 0.843842 | 1.09E-58 | -1.69E-46 |
| MS.gene059561 | MS.gene69940 | 0.800251 | 1.57E-48 | -1.69E-46 |
| MS.gene059713 | MS.gene69940 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene69940 | 0.819964 | 8.81E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene69940 | 0.813714 | 2.23E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene69940 | MS.gene07402 | PPI |
| MS.gene85573 | MS.gene69940 | PPI |
| MS.gene062256 | MS.gene69940 | PPI |
| MS.gene004875 | MS.gene69940 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69940.t1 | MTR_1g080860 | 96.838 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 0.0 | 496 |
| MS.gene69940.t1 | MTR_1g080860 | 96.281 | 242 | 7 | 2 | 1 | 240 | 1 | 242 | 5.95e-162 | 448 |
| MS.gene69940.t1 | MTR_1g093240 | 64.876 | 242 | 67 | 5 | 15 | 251 | 8 | 236 | 9.37e-100 | 290 |
| MS.gene69940.t1 | MTR_1g070520 | 65.306 | 245 | 61 | 7 | 17 | 251 | 15 | 245 | 5.48e-97 | 284 |
| MS.gene69940.t1 | MTR_1g093240 | 63.478 | 230 | 66 | 5 | 15 | 239 | 8 | 224 | 2.70e-90 | 266 |
| MS.gene69940.t1 | MTR_7g096090 | 60.656 | 244 | 85 | 4 | 15 | 251 | 11 | 250 | 3.34e-89 | 264 |
| MS.gene69940.t1 | MTR_1g093240 | 60.476 | 210 | 65 | 5 | 15 | 219 | 8 | 204 | 8.84e-76 | 228 |
| MS.gene69940.t1 | MTR_5g030710 | 47.917 | 288 | 96 | 9 | 15 | 251 | 51 | 335 | 1.68e-75 | 232 |
| MS.gene69940.t1 | MTR_6g488150 | 50.190 | 263 | 80 | 8 | 15 | 250 | 15 | 253 | 3.97e-74 | 226 |
| MS.gene69940.t1 | MTR_8g103030 | 48.029 | 279 | 92 | 7 | 15 | 250 | 24 | 292 | 5.38e-74 | 227 |
| MS.gene69940.t1 | MTR_8g067530 | 47.387 | 287 | 96 | 8 | 15 | 251 | 75 | 356 | 2.69e-73 | 228 |
| MS.gene69940.t1 | MTR_5g067350 | 47.719 | 285 | 97 | 7 | 15 | 250 | 65 | 346 | 1.56e-71 | 223 |
| MS.gene69940.t1 | MTR_2g101500 | 44.805 | 308 | 95 | 9 | 13 | 250 | 23 | 325 | 5.30e-71 | 221 |
| MS.gene69940.t1 | MTR_1g070830 | 47.162 | 229 | 80 | 5 | 15 | 240 | 12 | 202 | 7.27e-55 | 175 |
| MS.gene69940.t1 | MTR_1g040675 | 43.805 | 226 | 84 | 6 | 15 | 240 | 1 | 183 | 6.70e-53 | 170 |
| MS.gene69940.t1 | MTR_1g076270 | 46.222 | 225 | 64 | 8 | 15 | 239 | 11 | 178 | 1.34e-52 | 169 |
| MS.gene69940.t1 | MTR_1g093350 | 46.222 | 225 | 64 | 8 | 15 | 239 | 11 | 178 | 1.34e-52 | 169 |
| MS.gene69940.t1 | MTR_1g040675 | 40.488 | 205 | 79 | 7 | 15 | 219 | 1 | 162 | 2.55e-40 | 137 |
| MS.gene69940.t1 | MTR_1g069495 | 43.716 | 183 | 71 | 4 | 96 | 246 | 81 | 263 | 7.42e-37 | 131 |
| MS.gene69940.t1 | MTR_4g011880 | 41.991 | 231 | 68 | 9 | 15 | 243 | 6 | 172 | 4.55e-36 | 126 |
| MS.gene69940.t1 | MTR_2g102490 | 40.541 | 222 | 72 | 10 | 18 | 234 | 17 | 183 | 1.58e-34 | 123 |
| MS.gene69940.t1 | MTR_2g100780 | 36.220 | 254 | 122 | 10 | 21 | 242 | 18 | 263 | 5.54e-33 | 121 |
| MS.gene69940.t1 | MTR_2g100780 | 36.327 | 245 | 118 | 9 | 21 | 235 | 18 | 254 | 6.62e-33 | 120 |
| MS.gene69940.t1 | MTR_8g014520 | 35.223 | 247 | 126 | 10 | 21 | 235 | 16 | 260 | 1.16e-31 | 117 |
| MS.gene69940.t1 | MTR_8g014520 | 35.223 | 247 | 126 | 10 | 21 | 235 | 16 | 260 | 1.20e-31 | 117 |
| MS.gene69940.t1 | MTR_6g488150 | 41.848 | 184 | 58 | 7 | 15 | 173 | 15 | 174 | 1.03e-30 | 113 |
| MS.gene69940.t1 | MTR_5g067350 | 39.423 | 208 | 75 | 6 | 15 | 173 | 65 | 270 | 3.31e-28 | 108 |
| MS.gene69940.t1 | MTR_4g124300 | 35.461 | 141 | 61 | 4 | 95 | 233 | 69 | 181 | 6.23e-18 | 79.3 |
| MS.gene69940.t1 | MTR_3g106850 | 30.000 | 140 | 79 | 4 | 97 | 235 | 88 | 209 | 7.60e-18 | 79.7 |
| MS.gene69940.t1 | MTR_1g085750 | 39.796 | 98 | 47 | 3 | 135 | 232 | 85 | 170 | 2.51e-15 | 72.0 |
| MS.gene69940.t1 | MTR_7g110790 | 38.095 | 105 | 45 | 3 | 132 | 232 | 67 | 155 | 3.33e-15 | 71.2 |
| MS.gene69940.t1 | MTR_4g115075 | 27.815 | 151 | 86 | 3 | 82 | 232 | 78 | 205 | 4.75e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene69940.t1 | AT3G04730 | 66.000 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 8.49e-103 | 298 |
| MS.gene69940.t1 | AT4G14550 | 64.706 | 238 | 73 | 4 | 15 | 251 | 1 | 228 | 3.34e-99 | 289 |
| MS.gene69940.t1 | AT3G23050 | 62.195 | 246 | 78 | 6 | 14 | 251 | 5 | 243 | 2.01e-97 | 285 |
| MS.gene69940.t1 | AT4G14550 | 63.436 | 227 | 72 | 4 | 15 | 240 | 1 | 217 | 2.81e-91 | 269 |
| MS.gene69940.t1 | AT1G04250 | 57.741 | 239 | 83 | 6 | 15 | 251 | 7 | 229 | 1.10e-87 | 259 |
| MS.gene69940.t1 | AT4G29080 | 51.799 | 278 | 93 | 9 | 9 | 250 | 32 | 304 | 1.69e-78 | 239 |
| MS.gene69940.t1 | AT4G14550 | 60.976 | 205 | 69 | 4 | 15 | 218 | 1 | 195 | 2.50e-76 | 229 |
| MS.gene69940.t1 | AT3G23050 | 58.216 | 213 | 75 | 5 | 14 | 219 | 5 | 210 | 6.67e-75 | 226 |
| MS.gene69940.t1 | AT5G65670 | 48.264 | 288 | 101 | 9 | 7 | 251 | 54 | 336 | 1.70e-68 | 214 |
| MS.gene69940.t1 | AT2G22670 | 45.357 | 280 | 101 | 6 | 15 | 250 | 47 | 318 | 2.19e-67 | 211 |
| MS.gene69940.t1 | AT2G22670 | 45.357 | 280 | 101 | 6 | 15 | 250 | 47 | 318 | 2.19e-67 | 211 |
| MS.gene69940.t1 | AT2G22670 | 45.357 | 280 | 101 | 6 | 15 | 250 | 64 | 335 | 2.91e-67 | 211 |
| MS.gene69940.t1 | AT5G65670 | 47.931 | 290 | 101 | 10 | 7 | 251 | 54 | 338 | 1.31e-66 | 210 |
| MS.gene69940.t1 | AT2G22670 | 44.643 | 280 | 101 | 7 | 15 | 250 | 47 | 316 | 4.49e-64 | 202 |
| MS.gene69940.t1 | AT2G22670 | 44.643 | 280 | 101 | 7 | 15 | 250 | 47 | 316 | 4.49e-64 | 202 |
| MS.gene69940.t1 | AT1G04240 | 47.137 | 227 | 76 | 7 | 14 | 240 | 4 | 186 | 1.57e-59 | 187 |
| MS.gene69940.t1 | AT1G04240 | 47.137 | 227 | 76 | 7 | 14 | 240 | 104 | 286 | 2.92e-58 | 187 |
| MS.gene69940.t1 | AT5G43700 | 48.899 | 227 | 62 | 9 | 14 | 240 | 10 | 182 | 3.07e-58 | 183 |
| MS.gene69940.t1 | AT4G14550 | 57.500 | 160 | 57 | 4 | 15 | 173 | 1 | 150 | 7.21e-48 | 157 |
| MS.gene69940.t1 | AT3G23050 | 53.293 | 167 | 64 | 5 | 14 | 173 | 5 | 164 | 2.10e-45 | 150 |
| MS.gene69940.t1 | AT3G23030 | 41.453 | 234 | 66 | 5 | 10 | 239 | 4 | 170 | 2.38e-45 | 150 |
| MS.gene69940.t1 | AT3G23030 | 41.453 | 234 | 66 | 5 | 10 | 239 | 91 | 257 | 1.12e-44 | 151 |
| MS.gene69940.t1 | AT4G14560 | 40.991 | 222 | 67 | 6 | 15 | 236 | 7 | 164 | 1.99e-43 | 145 |
| MS.gene69940.t1 | AT3G15540 | 42.739 | 241 | 80 | 10 | 15 | 246 | 6 | 197 | 2.28e-43 | 145 |
| MS.gene69940.t1 | AT2G33310 | 43.684 | 190 | 85 | 6 | 73 | 245 | 53 | 237 | 3.45e-39 | 136 |
| MS.gene69940.t1 | AT1G15580 | 40.724 | 221 | 61 | 7 | 15 | 234 | 8 | 159 | 1.60e-38 | 132 |
| MS.gene69940.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 8.68e-38 | 133 |
| MS.gene69940.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 8.68e-38 | 133 |
| MS.gene69940.t1 | AT1G04550 | 43.085 | 188 | 70 | 6 | 83 | 246 | 56 | 230 | 2.62e-37 | 131 |
| MS.gene69940.t1 | AT1G52830 | 38.938 | 226 | 92 | 8 | 15 | 240 | 6 | 185 | 1.39e-35 | 125 |
| MS.gene69940.t1 | AT3G16500 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 5.53e-35 | 126 |
| MS.gene69940.t1 | AT3G16500 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 6.51e-35 | 126 |
| MS.gene69940.t1 | AT4G28640 | 37.179 | 234 | 112 | 7 | 29 | 240 | 22 | 242 | 3.57e-33 | 121 |
| MS.gene69940.t1 | AT4G28640 | 37.069 | 232 | 111 | 7 | 29 | 238 | 22 | 240 | 8.09e-33 | 120 |
| MS.gene69940.t1 | AT4G28640 | 37.069 | 232 | 111 | 7 | 29 | 238 | 22 | 240 | 3.13e-32 | 120 |
| MS.gene69940.t1 | AT1G51950 | 36.905 | 252 | 102 | 10 | 10 | 235 | 30 | 250 | 3.50e-31 | 116 |
| MS.gene69940.t1 | AT5G25890 | 36.842 | 190 | 93 | 5 | 54 | 242 | 7 | 170 | 1.44e-27 | 104 |
| MS.gene69940.t1 | AT1G04100 | 36.694 | 248 | 123 | 8 | 24 | 240 | 16 | 260 | 1.02e-26 | 104 |
| MS.gene69940.t1 | AT3G17600 | 34.848 | 132 | 61 | 3 | 101 | 232 | 48 | 154 | 1.02e-21 | 88.6 |
| MS.gene69940.t1 | AT2G46990 | 39.583 | 96 | 45 | 1 | 135 | 230 | 86 | 168 | 1.12e-16 | 75.9 |
| MS.gene69940.t1 | AT3G62100 | 38.776 | 98 | 47 | 1 | 135 | 232 | 84 | 168 | 1.59e-16 | 75.1 |
| MS.gene69940.t1 | AT4G32280 | 27.684 | 177 | 81 | 4 | 85 | 232 | 82 | 240 | 5.26e-16 | 75.5 |
| MS.gene69940.t1 | AT4G32280 | 35.714 | 98 | 45 | 2 | 135 | 232 | 119 | 198 | 9.29e-16 | 73.9 |
| MS.gene69940.t1 | AT1G80390 | 33.553 | 152 | 55 | 4 | 20 | 171 | 19 | 124 | 3.58e-13 | 65.1 |
| MS.gene69940.t1 | AT2G46990 | 38.824 | 85 | 39 | 1 | 135 | 219 | 86 | 157 | 5.89e-12 | 62.4 |
| MS.gene69940.t1 | AT3G62100 | 37.647 | 85 | 40 | 1 | 135 | 219 | 84 | 155 | 1.84e-11 | 61.2 |
Find 53 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACTCTTGTACAATTTA+AGG | 0.136546 | 1.4:+65795597 | None:intergenic |
| GATGAAGCAGAATCATTTAT+AGG | 0.292641 | 1.4:+65797800 | None:intergenic |
| TCATAAAGTCCTTGGTAACT+TGG | 0.357262 | 1.4:+65795513 | None:intergenic |
| TGCTTGTTGGTGATGTTCCT+TGG | 0.360170 | 1.4:-65795415 | MS.gene69940:CDS |
| TTCTTTCTAAAGGATCTAAC+TGG | 0.382249 | 1.4:+65795740 | None:intergenic |
| GAGTTACGACTCGGTCTTCC+AGG | 0.382644 | 1.4:-65797917 | MS.gene69940:CDS |
| ATTTACTATGTTCTTTCTAA+AGG | 0.395708 | 1.4:+65795730 | None:intergenic |
| AGGTCCACCTTACGTAGATA+TGG | 0.411796 | 1.4:+65795617 | None:intergenic |
| ATGAAAGGTTCCGAGGCAAT+TGG | 0.416704 | 1.4:-65795109 | MS.gene69940:CDS |
| CCTTCACAATTGACAATTGT+GGG | 0.417767 | 1.4:-65795538 | MS.gene69940:CDS |
| GCTTGTTGGTGATGTTCCTT+GGG | 0.420684 | 1.4:-65795414 | MS.gene69940:CDS |
| AAGAGAAAATGACTAACGTT+GGG | 0.423757 | 1.4:-65797985 | None:intergenic |
| GCTTTCATTCATAAAGTCCT+TGG | 0.434299 | 1.4:+65795505 | None:intergenic |
| AGCACAAGTGGTGGTGGGAA+TGG | 0.463834 | 1.4:-65795671 | MS.gene69940:CDS |
| CCAGCGCATCTGACAGCTCT+TGG | 0.472063 | 1.4:+65795576 | None:intergenic |
| TGAAAGGTTCCGAGGCAATT+GGG | 0.476415 | 1.4:-65795108 | MS.gene69940:CDS |
| AATTTGTAGGGCACAAGTTG+TGG | 0.477874 | 1.4:-65795771 | MS.gene69940:intron |
| CATAATCAGAACCGTTCAAA+AGG | 0.478352 | 1.4:+65795471 | None:intergenic |
| CCATCTTTGTCTTCATATGT+TGG | 0.478384 | 1.4:+65795446 | None:intergenic |
| CCAAGAGCTGTCAGATGCGC+TGG | 0.479602 | 1.4:-65795576 | MS.gene69940:CDS |
| GATAAGAGCACAAGTGGTGG+TGG | 0.485348 | 1.4:-65795677 | MS.gene69940:CDS |
| TCCTTCACAATTGACAATTG+TGG | 0.492530 | 1.4:-65795539 | MS.gene69940:CDS |
| ATGAAGACAAAGATGGTGAT+TGG | 0.495668 | 1.4:-65795439 | MS.gene69940:CDS |
| GATGGTGATTGGATGCTTGT+TGG | 0.521825 | 1.4:-65795428 | MS.gene69940:CDS |
| GGTTCCGAGGCAATTGGGCT+AGG | 0.522558 | 1.4:-65795103 | MS.gene69940:intron |
| CATAAAGTCCTTGGTAACTT+GGG | 0.531177 | 1.4:+65795514 | None:intergenic |
| TTTACCTAGCCCAATTGCCT+CGG | 0.542690 | 1.4:+65795099 | None:intergenic |
| TGGAAGACCGAGTCGTAACT+CGG | 0.546250 | 1.4:+65797919 | None:intergenic |
| TGGGAATGGAGCATTTGTTA+AGG | 0.549372 | 1.4:-65795657 | MS.gene69940:CDS |
| ATTTGTAGGGCACAAGTTGT+GGG | 0.551340 | 1.4:-65795770 | MS.gene69940:intron |
| CTTCCAGGTGCATGTGATCA+CGG | 0.554985 | 1.4:-65797902 | MS.gene69940:CDS |
| AAAGAGAAAATGACTAACGT+TGG | 0.560324 | 1.4:-65797986 | None:intergenic |
| ACTCACTTAGCACGAGGAGG+AGG | 0.560950 | 1.4:+65797710 | None:intergenic |
| TTTGTTAAGGTGAGCATGGA+TGG | 0.571730 | 1.4:-65795644 | MS.gene69940:CDS |
| GAAGCAGATAAGAGCACAAG+TGG | 0.581742 | 1.4:-65795683 | MS.gene69940:CDS |
| CCAACATATGAAGACAAAGA+TGG | 0.591098 | 1.4:-65795446 | MS.gene69940:CDS |
| TCTCCGTGATCACATGCACC+TGG | 0.592832 | 1.4:+65797899 | None:intergenic |
| GTAGGGCACAAGTTGTGGGA+TGG | 0.599917 | 1.4:-65795766 | MS.gene69940:intron |
| AGCATTTGTTAAGGTGAGCA+TGG | 0.602441 | 1.4:-65795648 | MS.gene69940:CDS |
| CCCACAATTGTCAATTGTGA+AGG | 0.603780 | 1.4:+65795538 | None:intergenic |
| TGGTGCACCATATCTACGTA+AGG | 0.613344 | 1.4:-65795624 | MS.gene69940:CDS |
| TTTCTAAAGGATCTAACTGG+TGG | 0.617257 | 1.4:+65795743 | None:intergenic |
| GCAGATAAGAGCACAAGTGG+TGG | 0.620410 | 1.4:-65795680 | MS.gene69940:CDS |
| AAGCGTCTTCGCATAATGAA+AGG | 0.624465 | 1.4:-65795124 | MS.gene69940:CDS |
| GCTTCTGTAGCTGAAAACAA+AGG | 0.627006 | 1.4:-65797764 | MS.gene69940:CDS |
| ATAAGAGCACAAGTGGTGGT+GGG | 0.631680 | 1.4:-65795676 | MS.gene69940:CDS |
| GAGGAGACCGAGTTACGACT+CGG | 0.639589 | 1.4:-65797926 | MS.gene69940:CDS |
| AAGAGGGGAACTCACTCCCA+AGG | 0.640728 | 1.4:+65795398 | None:intergenic |
| AGAGAAAATGACTAACGTTG+GGG | 0.657706 | 1.4:-65797984 | None:intergenic |
| TTGTGGGTCCCAAGTTACCA+AGG | 0.660834 | 1.4:-65795522 | MS.gene69940:CDS |
| TCGCATAATGAAAGGTTCCG+AGG | 0.668062 | 1.4:-65795116 | MS.gene69940:CDS |
| TGCACCATATCTACGTAAGG+TGG | 0.669757 | 1.4:-65795621 | MS.gene69940:CDS |
| AAAACTCACTTAGCACGAGG+AGG | 0.704960 | 1.4:+65797707 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAGATTAGATTTTTTTTTTA+AGG | - | chr1.4:65795563-65795582 | MS.gene69940:CDS | 10.0% |
| !!! | AATAATAGTATTATTTTAGT+TGG | - | chr1.4:65796632-65796651 | MS.gene69940:intron | 10.0% |
| !!! | AATTTTATTCAAAAAATTTG+AGG | + | chr1.4:65796308-65796327 | None:intergenic | 10.0% |
| !!! | AGATTAGATTTTTTTTTTAA+GGG | - | chr1.4:65795564-65795583 | MS.gene69940:CDS | 10.0% |
| !!! | ATTTTGAATAAGTTTTAATT+AGG | - | chr1.4:65795637-65795656 | MS.gene69940:CDS | 10.0% |
| !!! | CTTATAAAAATGTTTTAATT+AGG | - | chr1.4:65795663-65795682 | MS.gene69940:CDS | 10.0% |
| !! | AATTAACAATATTATATGAG+TGG | + | chr1.4:65796741-65796760 | None:intergenic | 15.0% |
| !! | ATATTATTGTTTAACAAAAC+AGG | + | chr1.4:65796060-65796079 | None:intergenic | 15.0% |
| !! | ATTAAAATTCATGTCAAAAT+AGG | + | chr1.4:65796334-65796353 | None:intergenic | 15.0% |
| !! | ATTTGTGTTTAATTAGAAAT+TGG | - | chr1.4:65796900-65796919 | MS.gene69940:intron | 15.0% |
| !! | TCAAATGTATTTAACAAATT+AGG | - | chr1.4:65797886-65797905 | MS.gene69940:CDS | 15.0% |
| !! | TGAATAATTAAGTTATATCT+AGG | - | chr1.4:65795369-65795388 | MS.gene69940:intron | 15.0% |
| !!! | AAAAAAAATAAAGTATTGGA+TGG | - | chr1.4:65796581-65796600 | MS.gene69940:intron | 15.0% |
| !!! | AAGTTTAATGTTAGTTTTTA+TGG | + | chr1.4:65796117-65796136 | None:intergenic | 15.0% |
| !!! | ACGATGTAATAAATTTTTAT+TGG | + | chr1.4:65797675-65797694 | None:intergenic | 15.0% |
| !!! | AGTTTTTAAAAGAATAAACA+TGG | - | chr1.4:65796461-65796480 | MS.gene69940:intron | 15.0% |
| !!! | TGTAATAAAATTGATTTTGA+AGG | + | chr1.4:65796402-65796421 | None:intergenic | 15.0% |
| !! | AAATTAAACAATGTAATGTG+AGG | + | chr1.4:65797571-65797590 | None:intergenic | 20.0% |
| !! | AAGGATAAATAAAGTTGAAA+AGG | - | chr1.4:65796772-65796791 | MS.gene69940:intron | 20.0% |
| !! | ATTTACTATGTTCTTTCTAA+AGG | + | chr1.4:65797209-65797228 | None:intergenic | 20.0% |
| !! | ATTTGTTTGTGAAAAACTAT+TGG | - | chr1.4:65795837-65795856 | MS.gene69940:intron | 20.0% |
| !! | CAATGAATATTGAATTTGTA+GGG | - | chr1.4:65797153-65797172 | MS.gene69940:intron | 20.0% |
| !! | CATAATTTACTGTAGTATAA+AGG | - | chr1.4:65796869-65796888 | MS.gene69940:intron | 20.0% |
| !! | GTAAATTATGCATGAATTAT+TGG | + | chr1.4:65796859-65796878 | None:intergenic | 20.0% |
| !! | TCAATGAATATTGAATTTGT+AGG | - | chr1.4:65797152-65797171 | MS.gene69940:intron | 20.0% |
| !! | TCATAGAGTATAGATAATTA+AGG | - | chr1.4:65795496-65795515 | MS.gene69940:CDS | 20.0% |
| !!! | AATGTTTTAATTAGGTTAGA+AGG | - | chr1.4:65795671-65795690 | MS.gene69940:CDS | 20.0% |
| !!! | ACTTTATTTATCCTTTTGTT+TGG | + | chr1.4:65796767-65796786 | None:intergenic | 20.0% |
| !!! | ATCTAATCTTTTCAATTCAA+TGG | + | chr1.4:65795553-65795572 | None:intergenic | 20.0% |
| !!! | CTTTATTTATCCTTTTGTTT+GGG | + | chr1.4:65796766-65796785 | None:intergenic | 20.0% |
| !!! | TTTATTTATCCTTTTGTTTG+GGG | + | chr1.4:65796765-65796784 | None:intergenic | 20.0% |
| !!! | TTTTTTGAACATGACAATTT+TGG | - | chr1.4:65795781-65795800 | MS.gene69940:intron | 20.0% |
| ! | AGACTATATAACAATGTGAT+AGG | + | chr1.4:65796832-65796851 | None:intergenic | 25.0% |
| ! | ATAAGATAAGATGTACCATA+TGG | + | chr1.4:65797919-65797938 | None:intergenic | 25.0% |
| ! | GTCTGTTTAATAAGATTAGT+TGG | - | chr1.4:65797104-65797123 | MS.gene69940:intron | 25.0% |
| ! | TTATCTATACTCTATGAACA+AGG | + | chr1.4:65795493-65795512 | None:intergenic | 25.0% |
| !! | AAATTAGGTTTAGAACCATA+TGG | - | chr1.4:65797901-65797920 | MS.gene69940:CDS | 25.0% |
| !! | AAATTGATTGACCTTTTGAA+CGG | - | chr1.4:65797454-65797473 | MS.gene69940:intron | 25.0% |
| !! | AATTTTTCTTGCACATAATC+TGG | + | chr1.4:65796547-65796566 | None:intergenic | 25.0% |
| !! | ATAATCTGGATGACATTTTT+AGG | + | chr1.4:65796533-65796552 | None:intergenic | 25.0% |
| !! | GTTTCTTGTTCCATAATTTT+TGG | - | chr1.4:65795729-65795748 | MS.gene69940:CDS | 25.0% |
| !!! | AAAAATAAAGTATTGGATGG+TGG | - | chr1.4:65796584-65796603 | MS.gene69940:intron | 25.0% |
| !!! | TTATATCTAGGTTTTGTTTG+AGG | - | chr1.4:65795381-65795400 | MS.gene69940:intron | 25.0% |
| !!! | TTATTTATCCTTTTGTTTGG+GGG | + | chr1.4:65796764-65796783 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGGATTTTTTCTG+CGG | - | chr1.4:65796645-65796664 | MS.gene69940:intron | 25.0% |
| AAAGAAAAAGACAAGACACT+TGG | - | chr1.4:65796695-65796714 | MS.gene69940:intron | 30.0% | |
| AATGTGAGGTGAAAAAAAGA+GGG | + | chr1.4:65797557-65797576 | None:intergenic | 30.0% | |
| GATGAAGCAGAATCATTTAT+AGG | + | chr1.4:65795139-65795158 | None:intergenic | 30.0% | |
| GCAAATTCTGCCAAAAATTA+TGG | + | chr1.4:65795742-65795761 | None:intergenic | 30.0% | |
| GGTAACTCTTGTACAATTTA+AGG | + | chr1.4:65797342-65797361 | None:intergenic | 30.0% | |
| GTTTGTGATTAAAGATCACA+CGG | - | chr1.4:65795696-65795715 | MS.gene69940:CDS | 30.0% | |
| TAATGTGAGGTGAAAAAAAG+AGG | + | chr1.4:65797558-65797577 | None:intergenic | 30.0% | |
| TCACCTGTTAAAAATAGTTG+CGG | - | chr1.4:65795061-65795080 | MS.gene69940:intron | 30.0% | |
| TGAACATCAACGATCTTAAT+CGG | + | chr1.4:65796980-65796999 | None:intergenic | 30.0% | |
| ! | ATGATCAAAGTGTTATGAGT+TGG | + | chr1.4:65797727-65797746 | None:intergenic | 30.0% |
| ! | ATTGGCAATTTGAGTTTGAT+TGG | - | chr1.4:65795855-65795874 | MS.gene69940:intron | 30.0% |
| ! | GTACAGCTTGATAAATTTTG+AGG | - | chr1.4:65794991-65795010 | MS.gene69940:intron | 30.0% |
| ! | TAATCTGATGATGAATGGAT+TGG | + | chr1.4:65797636-65797655 | None:intergenic | 30.0% |
| ! | TTCTTTCTAAAGGATCTAAC+TGG | + | chr1.4:65797199-65797218 | None:intergenic | 30.0% |
| ! | TTTGAACATGACAATTTTGG+TGG | - | chr1.4:65795784-65795803 | MS.gene69940:intron | 30.0% |
| !!! | TTTCCGCAACTATTTTTAAC+AGG | + | chr1.4:65795067-65795086 | None:intergenic | 30.0% |
| AAAAATAGTTGCGGAAAGAG+AGG | - | chr1.4:65795070-65795089 | MS.gene69940:intron | 35.0% | |
| AAGATCACACGGTTACAATT+AGG | - | chr1.4:65795707-65795726 | MS.gene69940:CDS | 35.0% | |
| ACAACGTATGGTAATCAATC+AGG | - | chr1.4:65796484-65796503 | MS.gene69940:intron | 35.0% | |
| AGGGGAATCTTATTAGAAAG+AGG | - | chr1.4:65795453-65795472 | MS.gene69940:CDS | 35.0% | |
| ATGAAGACAAAGATGGTGAT+TGG | - | chr1.4:65797497-65797516 | MS.gene69940:intron | 35.0% | |
| ATGTGAGGTGAAAAAAAGAG+GGG | + | chr1.4:65797556-65797575 | None:intergenic | 35.0% | |
| ATTTGTGTGCAACACTATTG+AGG | - | chr1.4:65795433-65795452 | MS.gene69940:CDS | 35.0% | |
| CAACGTATGGTAATCAATCA+GGG | - | chr1.4:65796485-65796504 | MS.gene69940:intron | 35.0% | |
| CATAATCAGAACCGTTCAAA+AGG | + | chr1.4:65797468-65797487 | None:intergenic | 35.0% | |
| CCAACATATGAAGACAAAGA+TGG | - | chr1.4:65797490-65797509 | MS.gene69940:intron | 35.0% | |
| CCATCTTTGTCTTCATATGT+TGG | + | chr1.4:65797493-65797512 | None:intergenic | 35.0% | |
| CCTTCACAATTGACAATTGT+GGG | - | chr1.4:65797398-65797417 | MS.gene69940:intron | 35.0% | |
| GAATAAACATGGACAACGTA+TGG | - | chr1.4:65796472-65796491 | MS.gene69940:intron | 35.0% | |
| GCTTTCATTCATAAAGTCCT+TGG | + | chr1.4:65797434-65797453 | None:intergenic | 35.0% | |
| TCAATGACGATAGAGAATCA+TGG | - | chr1.4:65797030-65797049 | MS.gene69940:intron | 35.0% | |
| TCCTTCACAATTGACAATTG+TGG | - | chr1.4:65797397-65797416 | MS.gene69940:intron | 35.0% | |
| TGTTAATTCCCCCAAACAAA+AGG | - | chr1.4:65796753-65796772 | MS.gene69940:intron | 35.0% | |
| TTTGTGTGCAACACTATTGA+GGG | - | chr1.4:65795434-65795453 | MS.gene69940:CDS | 35.0% | |
| ! | CAAAGTGTTATGAGTTGGAT+TGG | + | chr1.4:65797722-65797741 | None:intergenic | 35.0% |
| ! | CATAAAGTCCTTGGTAACTT+GGG | + | chr1.4:65797425-65797444 | None:intergenic | 35.0% |
| ! | CGACTTAATCTGATGATGAA+TGG | + | chr1.4:65797641-65797660 | None:intergenic | 35.0% |
| ! | TCATAAAGTCCTTGGTAACT+TGG | + | chr1.4:65797426-65797445 | None:intergenic | 35.0% |
| ! | TGTTATGAGTTGGATTGGAT+TGG | + | chr1.4:65797717-65797736 | None:intergenic | 35.0% |
| ! | TTTCTAAAGGATCTAACTGG+TGG | + | chr1.4:65797196-65797215 | None:intergenic | 35.0% |
| !! | TGATGATGAATGGATTGGTT+CGG | + | chr1.4:65797631-65797650 | None:intergenic | 35.0% |
| !! | TTGCATTTTTCAACTGCTCT+TGG | + | chr1.4:65797967-65797986 | None:intergenic | 35.0% |
| AAGCGTCTTCGCATAATGAA+AGG | - | chr1.4:65797812-65797831 | MS.gene69940:CDS | 40.0% | |
| AATTTGTAGGGCACAAGTTG+TGG | - | chr1.4:65797165-65797184 | MS.gene69940:intron | 40.0% | |
| AGAAAAACTCACTTAGCACG+AGG | + | chr1.4:65795235-65795254 | None:intergenic | 40.0% | |
| ATTTGTAGGGCACAAGTTGT+GGG | - | chr1.4:65797166-65797185 | MS.gene69940:intron | 40.0% | |
| CATCAACGATCTTAATCGGA+TGG | + | chr1.4:65796976-65796995 | None:intergenic | 40.0% | |
| CCCACAATTGTCAATTGTGA+AGG | + | chr1.4:65797401-65797420 | None:intergenic | 40.0% | |
| GCTTCTGTAGCTGAAAACAA+AGG | - | chr1.4:65795172-65795191 | MS.gene69940:intron | 40.0% | |
| TATGGTAATCAATCAGGGCA+TGG | - | chr1.4:65796490-65796509 | MS.gene69940:intron | 40.0% | |
| TTGTGTGCAACACTATTGAG+GGG | - | chr1.4:65795435-65795454 | MS.gene69940:CDS | 40.0% | |
| TTTGTTAAGGTGAGCATGGA+TGG | - | chr1.4:65797292-65797311 | MS.gene69940:intron | 40.0% | |
| ! | AGCATTTGTTAAGGTGAGCA+TGG | - | chr1.4:65797288-65797307 | MS.gene69940:intron | 40.0% |
| ! | TGGGAATGGAGCATTTGTTA+AGG | - | chr1.4:65797279-65797298 | MS.gene69940:intron | 40.0% |
| !! | GATGATGAATGGATTGGTTC+GGG | + | chr1.4:65797630-65797649 | None:intergenic | 40.0% |
| !!! | GATTTTTTCTGCGGATAGCA+TGG | - | chr1.4:65796654-65796673 | MS.gene69940:intron | 40.0% |
| !!! | GTTTTGTTTGAGGCTGAGAT+AGG | - | chr1.4:65795391-65795410 | MS.gene69940:intron | 40.0% |
| AAAACTCACTTAGCACGAGG+AGG | + | chr1.4:65795232-65795251 | None:intergenic | 45.0% | |
| AGGTCCACCTTACGTAGATA+TGG | + | chr1.4:65797322-65797341 | None:intergenic | 45.0% | |
| ATGAAAGGTTCCGAGGCAAT+TGG | - | chr1.4:65797827-65797846 | MS.gene69940:CDS | 45.0% | |
| CAGTCGATGGTAGAGAATCT+TGG | - | chr1.4:65797082-65797101 | MS.gene69940:intron | 45.0% | |
| GACTGCATGAATTTACGCAG+TGG | + | chr1.4:65797012-65797031 | None:intergenic | 45.0% | |
| GATGGTGATTGGATGCTTGT+TGG | - | chr1.4:65797508-65797527 | MS.gene69940:intron | 45.0% | |
| GCATAAATTCGTGCAGTCGA+TGG | - | chr1.4:65797069-65797088 | MS.gene69940:intron | 45.0% | |
| TCGCATAATGAAAGGTTCCG+AGG | - | chr1.4:65797820-65797839 | MS.gene69940:CDS | 45.0% | |
| TGAAAGGTTCCGAGGCAATT+GGG | - | chr1.4:65797828-65797847 | MS.gene69940:CDS | 45.0% | |
| TGCACCATATCTACGTAAGG+TGG | - | chr1.4:65797315-65797334 | MS.gene69940:intron | 45.0% | |
| TGGTGCACCATATCTACGTA+AGG | - | chr1.4:65797312-65797331 | MS.gene69940:intron | 45.0% | |
| TTTACCTAGCCCAATTGCCT+CGG | + | chr1.4:65797840-65797859 | None:intergenic | 45.0% | |
| ! | ATAAGAGCACAAGTGGTGGT+GGG | - | chr1.4:65797260-65797279 | MS.gene69940:intron | 45.0% |
| ! | GAAGCAGATAAGAGCACAAG+TGG | - | chr1.4:65797253-65797272 | MS.gene69940:intron | 45.0% |
| ! | TTTTCTGCGGATAGCATGGT+TGG | - | chr1.4:65796658-65796677 | MS.gene69940:intron | 45.0% |
| !! | AAGTATTGGATGGTGGCTGA+AGG | - | chr1.4:65796591-65796610 | MS.gene69940:intron | 45.0% |
| !! | ATTGGTTCGGGTCAGATCAA+CGG | + | chr1.4:65797618-65797637 | None:intergenic | 45.0% |
| !! | GCTTGTTGGTGATGTTCCTT+GGG | - | chr1.4:65797522-65797541 | MS.gene69940:intron | 45.0% |
| !! | TGCTTGTTGGTGATGTTCCT+TGG | - | chr1.4:65797521-65797540 | MS.gene69940:intron | 45.0% |
| !! | AATAAAAAAAAATAAAGTAT+TGG | - | chr1.4:65796577-65796596 | MS.gene69940:intron | 5.0% |
| AATCAATCAGGGCATGGTGG+AGG | - | chr1.4:65796496-65796515 | MS.gene69940:intron | 50.0% | |
| CTTCCAGGTGCATGTGATCA+CGG | - | chr1.4:65795034-65795053 | MS.gene69940:intron | 50.0% | |
| GGTAATCAATCAGGGCATGG+TGG | - | chr1.4:65796493-65796512 | MS.gene69940:intron | 50.0% | |
| GTGACACGCACACAAGACAA+GGG | + | chr1.4:65796810-65796829 | None:intergenic | 50.0% | |
| TGGAAGACCGAGTCGTAACT+CGG | + | chr1.4:65795020-65795039 | None:intergenic | 50.0% | |
| TGGTGGCTGAAGGAATAGGT+TGG | - | chr1.4:65796601-65796620 | MS.gene69940:intron | 50.0% | |
| TTGTGGGTCCCAAGTTACCA+AGG | - | chr1.4:65797414-65797433 | MS.gene69940:intron | 50.0% | |
| ! | CGGATAGCATGGTTGGTTGT+CGG | - | chr1.4:65796665-65796684 | MS.gene69940:intron | 50.0% |
| ! | GATAAGAGCACAAGTGGTGG+TGG | - | chr1.4:65797259-65797278 | MS.gene69940:intron | 50.0% |
| ! | GCAGATAAGAGCACAAGTGG+TGG | - | chr1.4:65797256-65797275 | MS.gene69940:intron | 50.0% |
| ! | GGATAGCATGGTTGGTTGTC+GGG | - | chr1.4:65796666-65796685 | MS.gene69940:intron | 50.0% |
| ! | TGGATGGTGGCTGAAGGAAT+AGG | - | chr1.4:65796597-65796616 | MS.gene69940:intron | 50.0% |
| AAGAGGGGAACTCACTCCCA+AGG | + | chr1.4:65797541-65797560 | None:intergenic | 55.0% | |
| ACTCACTTAGCACGAGGAGG+AGG | + | chr1.4:65795229-65795248 | None:intergenic | 55.0% | |
| GAGGAGACCGAGTTACGACT+CGG | - | chr1.4:65795010-65795029 | MS.gene69940:intron | 55.0% | |
| GGTGACACGCACACAAGACA+AGG | + | chr1.4:65796811-65796830 | None:intergenic | 55.0% | |
| GTAGGGCACAAGTTGTGGGA+TGG | - | chr1.4:65797170-65797189 | MS.gene69940:intron | 55.0% | |
| TCTCCGTGATCACATGCACC+TGG | + | chr1.4:65795040-65795059 | None:intergenic | 55.0% | |
| !! | AGCACAAGTGGTGGTGGGAA+TGG | - | chr1.4:65797265-65797284 | MS.gene69940:intron | 55.0% |
| !! | GAGTTACGACTCGGTCTTCC+AGG | - | chr1.4:65795019-65795038 | MS.gene69940:intron | 55.0% |
| CCAAGAGCTGTCAGATGCGC+TGG | - | chr1.4:65797360-65797379 | MS.gene69940:intron | 60.0% | |
| CCAGCGCATCTGACAGCTCT+TGG | + | chr1.4:65797363-65797382 | None:intergenic | 60.0% | |
| GGTTCCGAGGCAATTGGGCT+AGG | - | chr1.4:65797833-65797852 | MS.gene69940:CDS | 60.0% | |
| ! | GCACACAAGACAAGGGCGTG+TGG | + | chr1.4:65796803-65796822 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65794959 | 65797999 | 65794959 | ID=MS.gene69940 |
| chr1.4 | mRNA | 65794959 | 65797999 | 65794959 | ID=MS.gene69940.t1;Parent=MS.gene69940 |
| chr1.4 | exon | 65797716 | 65797999 | 65797716 | ID=MS.gene69940.t1.exon1;Parent=MS.gene69940.t1 |
| chr1.4 | CDS | 65797716 | 65797999 | 65797716 | ID=cds.MS.gene69940.t1;Parent=MS.gene69940.t1 |
| chr1.4 | exon | 65795413 | 65795784 | 65795413 | ID=MS.gene69940.t1.exon2;Parent=MS.gene69940.t1 |
| chr1.4 | CDS | 65795413 | 65795784 | 65795413 | ID=cds.MS.gene69940.t1;Parent=MS.gene69940.t1 |
| chr1.4 | exon | 65795104 | 65795165 | 65795104 | ID=MS.gene69940.t1.exon3;Parent=MS.gene69940.t1 |
| chr1.4 | CDS | 65795104 | 65795165 | 65795104 | ID=cds.MS.gene69940.t1;Parent=MS.gene69940.t1 |
| chr1.4 | exon | 65794959 | 65794996 | 65794959 | ID=MS.gene69940.t1.exon4;Parent=MS.gene69940.t1 |
| chr1.4 | CDS | 65794959 | 65794996 | 65794959 | ID=cds.MS.gene69940.t1;Parent=MS.gene69940.t1 |
| Gene Sequence |
| Protein sequence |
