Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44001.t1 | XP_013468980.1 | 97.2 | 253 | 5 | 2 | 1 | 251 | 1 | 253 | 2.40E-132 | 481.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44001.t1 | O24407 | 66.0 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 2.2e-78 | 293.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44001.t1 | A0A072VMG8 | 97.2 | 253 | 5 | 2 | 1 | 251 | 1 | 253 | 1.7e-132 | 481.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene44001.t1 | TR | AUX/IAA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04915 | MS.gene44001 | 0.833172 | 6.21E-56 | -1.69E-46 |
MS.gene04917 | MS.gene44001 | 0.833671 | 4.66E-56 | -1.69E-46 |
MS.gene049382 | MS.gene44001 | 0.80024 | 1.58E-48 | -1.69E-46 |
MS.gene049685 | MS.gene44001 | 0.800306 | 1.53E-48 | -1.69E-46 |
MS.gene04984 | MS.gene44001 | 0.809424 | 1.90E-50 | -1.69E-46 |
MS.gene050439 | MS.gene44001 | 0.803184 | 3.94E-49 | -1.69E-46 |
MS.gene050629 | MS.gene44001 | -0.809859 | 1.54E-50 | -1.69E-46 |
MS.gene050762 | MS.gene44001 | 0.845991 | 2.88E-59 | -1.69E-46 |
MS.gene050763 | MS.gene44001 | 0.844251 | 8.49E-59 | -1.69E-46 |
MS.gene050807 | MS.gene44001 | 0.804477 | 2.12E-49 | -1.69E-46 |
MS.gene051102 | MS.gene44001 | 0.830074 | 3.60E-55 | -1.69E-46 |
MS.gene052665 | MS.gene44001 | 0.825103 | 5.63E-54 | -1.69E-46 |
MS.gene052856 | MS.gene44001 | 0.802803 | 4.72E-49 | -1.69E-46 |
MS.gene05350 | MS.gene44001 | 0.803938 | 2.74E-49 | -1.69E-46 |
MS.gene054379 | MS.gene44001 | 0.842661 | 2.26E-58 | -1.69E-46 |
MS.gene05462 | MS.gene44001 | 0.810449 | 1.15E-50 | -1.69E-46 |
MS.gene055311 | MS.gene44001 | 0.8192 | 1.32E-52 | -1.69E-46 |
MS.gene055313 | MS.gene44001 | 0.807287 | 5.44E-50 | -1.69E-46 |
MS.gene055465 | MS.gene44001 | 0.805963 | 1.04E-49 | -1.69E-46 |
MS.gene055468 | MS.gene44001 | 0.800517 | 1.39E-48 | -1.69E-46 |
MS.gene055469 | MS.gene44001 | 0.847093 | 1.44E-59 | -1.69E-46 |
MS.gene055861 | MS.gene44001 | -0.801985 | 6.95E-49 | -1.69E-46 |
MS.gene056390 | MS.gene44001 | 0.807645 | 4.57E-50 | -1.69E-46 |
MS.gene056480 | MS.gene44001 | 0.820652 | 6.13E-53 | -1.69E-46 |
MS.gene057360 | MS.gene44001 | 0.830395 | 3.01E-55 | -1.69E-46 |
MS.gene058278 | MS.gene44001 | 0.829331 | 5.47E-55 | -1.69E-46 |
MS.gene058638 | MS.gene44001 | 0.821603 | 3.70E-53 | -1.69E-46 |
MS.gene058639 | MS.gene44001 | 0.823275 | 1.51E-53 | -1.69E-46 |
MS.gene058647 | MS.gene44001 | 0.804901 | 1.73E-49 | -1.69E-46 |
MS.gene058758 | MS.gene44001 | 0.815482 | 9.04E-52 | -1.69E-46 |
MS.gene059713 | MS.gene44001 | 0.855662 | 5.43E-62 | -1.69E-46 |
MS.gene059719 | MS.gene44001 | 0.818175 | 2.25E-52 | -1.69E-46 |
MS.gene059725 | MS.gene44001 | 0.821942 | 3.09E-53 | -1.69E-46 |
MS.gene06052 | MS.gene44001 | 0.820461 | 6.78E-53 | -1.69E-46 |
MS.gene060869 | MS.gene44001 | 0.813068 | 3.09E-51 | -1.69E-46 |
MS.gene060870 | MS.gene44001 | 0.801729 | 7.85E-49 | -1.69E-46 |
MS.gene060998 | MS.gene44001 | 0.811516 | 6.73E-51 | -1.69E-46 |
MS.gene061006 | MS.gene44001 | 0.820393 | 7.02E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene44001 | MS.gene004875 | PPI |
MS.gene44001 | MS.gene07402 | PPI |
MS.gene44001 | MS.gene85573 | PPI |
MS.gene44001 | MS.gene062256 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44001.t1 | MTR_1g080860 | 97.233 | 253 | 5 | 2 | 1 | 251 | 1 | 253 | 0.0 | 500 |
MS.gene44001.t1 | MTR_1g080860 | 96.694 | 242 | 6 | 2 | 1 | 240 | 1 | 242 | 2.13e-172 | 474 |
MS.gene44001.t1 | MTR_1g093240 | 65.289 | 242 | 66 | 5 | 15 | 251 | 8 | 236 | 7.61e-100 | 291 |
MS.gene44001.t1 | MTR_1g070520 | 65.844 | 243 | 63 | 6 | 17 | 251 | 15 | 245 | 1.61e-97 | 285 |
MS.gene44001.t1 | MTR_7g096090 | 61.066 | 244 | 84 | 4 | 15 | 251 | 11 | 250 | 1.83e-90 | 268 |
MS.gene44001.t1 | MTR_1g093240 | 63.913 | 230 | 65 | 5 | 15 | 239 | 8 | 224 | 3.11e-90 | 266 |
MS.gene44001.t1 | MTR_1g093240 | 60.952 | 210 | 64 | 5 | 15 | 219 | 8 | 204 | 1.04e-75 | 228 |
MS.gene44001.t1 | MTR_5g030710 | 47.917 | 288 | 96 | 9 | 15 | 251 | 51 | 335 | 2.53e-75 | 232 |
MS.gene44001.t1 | MTR_6g488150 | 50.190 | 263 | 80 | 8 | 15 | 250 | 15 | 253 | 2.87e-74 | 226 |
MS.gene44001.t1 | MTR_8g103030 | 48.029 | 279 | 92 | 7 | 15 | 250 | 24 | 292 | 2.89e-74 | 228 |
MS.gene44001.t1 | MTR_8g067530 | 46.897 | 290 | 93 | 8 | 15 | 251 | 75 | 356 | 2.78e-73 | 227 |
MS.gene44001.t1 | MTR_2g101500 | 45.603 | 307 | 94 | 9 | 13 | 250 | 23 | 325 | 1.25e-71 | 222 |
MS.gene44001.t1 | MTR_5g067350 | 47.719 | 285 | 97 | 7 | 15 | 250 | 65 | 346 | 3.68e-71 | 222 |
MS.gene44001.t1 | MTR_1g070830 | 47.162 | 229 | 80 | 5 | 15 | 240 | 12 | 202 | 3.09e-55 | 176 |
MS.gene44001.t1 | MTR_1g040675 | 43.805 | 226 | 84 | 6 | 15 | 240 | 1 | 183 | 6.01e-53 | 170 |
MS.gene44001.t1 | MTR_1g076270 | 46.222 | 225 | 64 | 8 | 15 | 239 | 11 | 178 | 1.33e-52 | 169 |
MS.gene44001.t1 | MTR_1g093350 | 46.222 | 225 | 64 | 8 | 15 | 239 | 11 | 178 | 1.33e-52 | 169 |
MS.gene44001.t1 | MTR_1g040675 | 40.488 | 205 | 79 | 7 | 15 | 219 | 1 | 162 | 2.39e-40 | 137 |
MS.gene44001.t1 | MTR_1g069495 | 43.716 | 183 | 71 | 4 | 96 | 246 | 81 | 263 | 8.52e-37 | 131 |
MS.gene44001.t1 | MTR_4g011880 | 41.991 | 231 | 68 | 9 | 15 | 243 | 6 | 172 | 3.55e-36 | 126 |
MS.gene44001.t1 | MTR_2g102490 | 40.541 | 222 | 72 | 10 | 18 | 234 | 17 | 183 | 9.04e-35 | 124 |
MS.gene44001.t1 | MTR_2g100780 | 36.220 | 254 | 122 | 10 | 21 | 242 | 18 | 263 | 5.04e-33 | 121 |
MS.gene44001.t1 | MTR_2g100780 | 36.327 | 245 | 118 | 9 | 21 | 235 | 18 | 254 | 5.08e-33 | 121 |
MS.gene44001.t1 | MTR_8g014520 | 35.223 | 247 | 126 | 10 | 21 | 235 | 16 | 260 | 8.84e-32 | 118 |
MS.gene44001.t1 | MTR_8g014520 | 35.223 | 247 | 126 | 10 | 21 | 235 | 16 | 260 | 1.05e-31 | 117 |
MS.gene44001.t1 | MTR_6g488150 | 41.848 | 184 | 58 | 7 | 15 | 173 | 15 | 174 | 9.68e-31 | 113 |
MS.gene44001.t1 | MTR_5g067350 | 39.423 | 208 | 75 | 6 | 15 | 173 | 65 | 270 | 8.59e-28 | 107 |
MS.gene44001.t1 | MTR_4g124300 | 35.915 | 142 | 59 | 5 | 95 | 233 | 69 | 181 | 5.86e-18 | 79.3 |
MS.gene44001.t1 | MTR_3g106850 | 29.787 | 141 | 80 | 4 | 97 | 236 | 88 | 210 | 7.07e-18 | 79.7 |
MS.gene44001.t1 | MTR_1g085750 | 39.796 | 98 | 47 | 3 | 135 | 232 | 85 | 170 | 2.69e-15 | 72.0 |
MS.gene44001.t1 | MTR_4g115075 | 27.815 | 151 | 86 | 3 | 82 | 232 | 78 | 205 | 3.80e-15 | 72.4 |
MS.gene44001.t1 | MTR_7g110790 | 38.095 | 105 | 45 | 3 | 132 | 232 | 67 | 155 | 4.17e-15 | 71.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene44001.t1 | AT3G04730 | 66.000 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 5.48e-103 | 299 |
MS.gene44001.t1 | AT4G14550 | 64.706 | 238 | 73 | 4 | 15 | 251 | 1 | 228 | 6.66e-99 | 288 |
MS.gene44001.t1 | AT3G23050 | 62.195 | 246 | 78 | 6 | 14 | 251 | 5 | 243 | 2.29e-97 | 285 |
MS.gene44001.t1 | AT4G14550 | 63.436 | 227 | 72 | 4 | 15 | 240 | 1 | 217 | 7.35e-91 | 268 |
MS.gene44001.t1 | AT1G04250 | 57.741 | 239 | 83 | 6 | 15 | 251 | 7 | 229 | 7.96e-88 | 260 |
MS.gene44001.t1 | AT4G29080 | 51.799 | 278 | 93 | 9 | 9 | 250 | 32 | 304 | 1.16e-78 | 239 |
MS.gene44001.t1 | AT4G14550 | 60.976 | 205 | 69 | 4 | 15 | 218 | 1 | 195 | 7.12e-76 | 228 |
MS.gene44001.t1 | AT3G23050 | 58.216 | 213 | 75 | 5 | 14 | 219 | 5 | 210 | 9.56e-75 | 226 |
MS.gene44001.t1 | AT5G65670 | 48.264 | 288 | 101 | 9 | 7 | 251 | 54 | 336 | 1.01e-68 | 215 |
MS.gene44001.t1 | AT2G22670 | 45.161 | 279 | 103 | 6 | 15 | 250 | 47 | 318 | 3.00e-67 | 211 |
MS.gene44001.t1 | AT2G22670 | 45.161 | 279 | 103 | 6 | 15 | 250 | 47 | 318 | 3.00e-67 | 211 |
MS.gene44001.t1 | AT2G22670 | 45.161 | 279 | 103 | 6 | 15 | 250 | 64 | 335 | 3.57e-67 | 211 |
MS.gene44001.t1 | AT5G65670 | 47.931 | 290 | 101 | 10 | 7 | 251 | 54 | 338 | 1.16e-66 | 210 |
MS.gene44001.t1 | AT2G22670 | 44.444 | 279 | 103 | 7 | 15 | 250 | 47 | 316 | 4.95e-64 | 202 |
MS.gene44001.t1 | AT2G22670 | 44.444 | 279 | 103 | 7 | 15 | 250 | 47 | 316 | 4.95e-64 | 202 |
MS.gene44001.t1 | AT1G04240 | 47.137 | 227 | 76 | 7 | 14 | 240 | 4 | 186 | 2.82e-60 | 189 |
MS.gene44001.t1 | AT1G04240 | 47.137 | 227 | 76 | 7 | 14 | 240 | 104 | 286 | 5.46e-59 | 189 |
MS.gene44001.t1 | AT5G43700 | 48.899 | 227 | 62 | 8 | 14 | 240 | 10 | 182 | 3.90e-58 | 183 |
MS.gene44001.t1 | AT4G14550 | 57.500 | 160 | 57 | 4 | 15 | 173 | 1 | 150 | 1.20e-47 | 156 |
MS.gene44001.t1 | AT3G23030 | 41.453 | 234 | 66 | 5 | 10 | 239 | 4 | 170 | 1.72e-45 | 150 |
MS.gene44001.t1 | AT3G23050 | 53.293 | 167 | 64 | 5 | 14 | 173 | 5 | 164 | 2.73e-45 | 149 |
MS.gene44001.t1 | AT3G23030 | 41.453 | 234 | 66 | 5 | 10 | 239 | 91 | 257 | 1.18e-44 | 151 |
MS.gene44001.t1 | AT3G15540 | 42.739 | 241 | 80 | 10 | 15 | 246 | 6 | 197 | 1.60e-43 | 146 |
MS.gene44001.t1 | AT4G14560 | 40.991 | 222 | 67 | 6 | 15 | 236 | 7 | 164 | 1.81e-43 | 145 |
MS.gene44001.t1 | AT2G33310 | 43.684 | 190 | 85 | 6 | 73 | 245 | 53 | 237 | 4.27e-39 | 136 |
MS.gene44001.t1 | AT1G15580 | 40.724 | 221 | 61 | 7 | 15 | 234 | 8 | 159 | 1.42e-38 | 132 |
MS.gene44001.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.05e-37 | 132 |
MS.gene44001.t1 | AT2G33310 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.05e-37 | 132 |
MS.gene44001.t1 | AT1G04550 | 43.085 | 188 | 70 | 6 | 83 | 246 | 56 | 230 | 3.21e-37 | 131 |
MS.gene44001.t1 | AT1G52830 | 38.938 | 226 | 92 | 8 | 15 | 240 | 6 | 185 | 9.15e-36 | 126 |
MS.gene44001.t1 | AT3G16500 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 5.32e-35 | 126 |
MS.gene44001.t1 | AT3G16500 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 5.36e-35 | 126 |
MS.gene44001.t1 | AT4G28640 | 45.283 | 159 | 70 | 5 | 96 | 240 | 87 | 242 | 5.46e-33 | 120 |
MS.gene44001.t1 | AT4G28640 | 45.223 | 157 | 69 | 5 | 96 | 238 | 87 | 240 | 1.04e-32 | 120 |
MS.gene44001.t1 | AT4G28640 | 45.513 | 156 | 68 | 5 | 97 | 238 | 88 | 240 | 9.42e-32 | 119 |
MS.gene44001.t1 | AT1G51950 | 36.000 | 250 | 107 | 9 | 10 | 235 | 30 | 250 | 3.80e-31 | 116 |
MS.gene44001.t1 | AT5G25890 | 36.842 | 190 | 93 | 5 | 54 | 242 | 7 | 170 | 1.33e-27 | 104 |
MS.gene44001.t1 | AT1G04100 | 36.842 | 247 | 122 | 8 | 24 | 239 | 16 | 259 | 7.74e-27 | 104 |
MS.gene44001.t1 | AT3G17600 | 34.848 | 132 | 61 | 3 | 101 | 232 | 48 | 154 | 9.39e-22 | 89.0 |
MS.gene44001.t1 | AT2G46990 | 39.583 | 96 | 45 | 1 | 135 | 230 | 86 | 168 | 1.05e-16 | 75.9 |
MS.gene44001.t1 | AT3G62100 | 38.776 | 98 | 47 | 1 | 135 | 232 | 84 | 168 | 1.42e-16 | 75.5 |
MS.gene44001.t1 | AT4G32280 | 27.684 | 177 | 81 | 4 | 85 | 232 | 82 | 240 | 5.37e-16 | 75.5 |
MS.gene44001.t1 | AT4G32280 | 35.714 | 98 | 45 | 2 | 135 | 232 | 119 | 198 | 9.10e-16 | 73.9 |
MS.gene44001.t1 | AT1G80390 | 33.553 | 152 | 55 | 4 | 20 | 171 | 19 | 124 | 3.80e-13 | 65.1 |
MS.gene44001.t1 | AT2G46990 | 38.824 | 85 | 39 | 1 | 135 | 219 | 86 | 157 | 5.49e-12 | 62.8 |
MS.gene44001.t1 | AT3G62100 | 37.647 | 85 | 40 | 1 | 135 | 219 | 84 | 155 | 1.70e-11 | 61.2 |
Find 56 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGTAACTCTTGTACAATTTA+AGG | 0.136546 | 1.3:+57234588 | None:intergenic |
GATGAAGCAGAATCATTTAT+AGG | 0.292641 | 1.3:+57236789 | None:intergenic |
TCATAAAGTCCTTGGTAACT+TGG | 0.357262 | 1.3:+57234504 | None:intergenic |
GAGTTACGACTCGGTCTTCC+AGG | 0.382644 | 1.3:-57236906 | MS.gene44001:CDS |
TTCTTTCTGAAAGATCTAAC+TGG | 0.401360 | 1.3:+57234731 | None:intergenic |
AGGTCCACCTTACGTAGATA+TGG | 0.411796 | 1.3:+57234608 | None:intergenic |
ATGAAAGGTTCCGAGGCAAT+TGG | 0.416704 | 1.3:-57234126 | MS.gene44001:CDS |
CCTTCACAATTGACAATTGT+GGG | 0.417767 | 1.3:-57234529 | MS.gene44001:CDS |
AAGAGAAAATGACTAACGTT+GGG | 0.423757 | 1.3:-57236974 | None:intergenic |
GCTTTCATTCATAAAGTCCT+TGG | 0.434299 | 1.3:+57234496 | None:intergenic |
TGCTTGTTGGTGATGTTCCA+TGG | 0.442945 | 1.3:-57234406 | MS.gene44001:CDS |
AGCACAAGTGGTGGTGGGAA+TGG | 0.463834 | 1.3:-57234662 | MS.gene44001:CDS |
CCAGCGCATCTGACAGCTCT+TGG | 0.472063 | 1.3:+57234567 | None:intergenic |
TGAAAGGTTCCGAGGCAATT+GGG | 0.476415 | 1.3:-57234125 | MS.gene44001:CDS |
AATTTGTAGGGCACAAGTTG+TGG | 0.477874 | 1.3:-57234762 | MS.gene44001:intron |
CATAATCAGAACCGTTCAAA+AGG | 0.478352 | 1.3:+57234462 | None:intergenic |
CCATCTTTGTCTTCATATGT+TGG | 0.478384 | 1.3:+57234437 | None:intergenic |
CCAAGAGCTGTCAGATGCGC+TGG | 0.479602 | 1.3:-57234567 | MS.gene44001:CDS |
GATAAGAGCACAAGTGGTGG+TGG | 0.485348 | 1.3:-57234668 | MS.gene44001:CDS |
TCCTTCACAATTGACAATTG+TGG | 0.492530 | 1.3:-57234530 | MS.gene44001:CDS |
ATGAAGACAAAGATGGTGAT+TGG | 0.495668 | 1.3:-57234430 | MS.gene44001:CDS |
GATGGTGATTGGATGCTTGT+TGG | 0.521825 | 1.3:-57234419 | MS.gene44001:CDS |
GGTTCCGAGGCAATTGGGCT+AGG | 0.522558 | 1.3:-57234120 | MS.gene44001:intron |
CATAAAGTCCTTGGTAACTT+GGG | 0.531177 | 1.3:+57234505 | None:intergenic |
TCTCCGTGATCACCTGCACC+TGG | 0.533867 | 1.3:+57236888 | None:intergenic |
GCTTGTTGGTGATGTTCCAT+GGG | 0.534588 | 1.3:-57234405 | MS.gene44001:CDS |
TTTACCTAGCCCAATTGCCT+CGG | 0.542690 | 1.3:+57234116 | None:intergenic |
TGGAAGACCGAGTCGTAACT+CGG | 0.546250 | 1.3:+57236908 | None:intergenic |
TGGGAATGGAGCATTTGTTA+AGG | 0.549372 | 1.3:-57234648 | MS.gene44001:CDS |
ATTTGTAGGGCACAAGTTGT+GGG | 0.551340 | 1.3:-57234761 | MS.gene44001:intron |
CTTCCAGGTGCAGGTGATCA+CGG | 0.551547 | 1.3:-57236891 | MS.gene44001:CDS |
AATTACAGCACCAAGGGCAG+TGG | 0.556761 | 1.3:-57233999 | MS.gene44001:intron |
CGACTCGGTCTTCCAGGTGC+AGG | 0.557067 | 1.3:-57236900 | MS.gene44001:CDS |
AAAGAGAAAATGACTAACGT+TGG | 0.560324 | 1.3:-57236975 | None:intergenic |
ACTCACTTAGCACGAGGAGG+AGG | 0.560950 | 1.3:+57236699 | None:intergenic |
TTTGTTAAGGTGAGCATGGA+TGG | 0.571730 | 1.3:-57234635 | MS.gene44001:CDS |
GAAGCAGATAAGAGCACAAG+TGG | 0.581742 | 1.3:-57234674 | MS.gene44001:CDS |
ATTGTTAATTACAGCACCAA+GGG | 0.584897 | 1.3:-57234005 | MS.gene44001:intron |
AAAAGGGCTACTCACTCCCA+TGG | 0.587502 | 1.3:+57234389 | None:intergenic |
CCAACATATGAAGACAAAGA+TGG | 0.591098 | 1.3:-57234437 | MS.gene44001:CDS |
GTAGGGCACAAGTTGTGGGA+TGG | 0.599917 | 1.3:-57234757 | MS.gene44001:intron |
AGCATTTGTTAAGGTGAGCA+TGG | 0.602441 | 1.3:-57234639 | MS.gene44001:CDS |
CCCACAATTGTCAATTGTGA+AGG | 0.603780 | 1.3:+57234529 | None:intergenic |
TGGTGCACCATATCTACGTA+AGG | 0.613344 | 1.3:-57234615 | MS.gene44001:CDS |
GCAGATAAGAGCACAAGTGG+TGG | 0.620410 | 1.3:-57234671 | MS.gene44001:CDS |
AAGCGTCTTCGCATAATGAA+AGG | 0.624465 | 1.3:-57234141 | MS.gene44001:CDS |
GCTTCTGTAGCTGAAAACAA+AGG | 0.627006 | 1.3:-57236753 | MS.gene44001:CDS |
ATAAGAGCACAAGTGGTGGT+GGG | 0.631680 | 1.3:-57234667 | MS.gene44001:CDS |
GAGGAGACCGAGTTACGACT+CGG | 0.639589 | 1.3:-57236915 | MS.gene44001:CDS |
TATTGTTAATTACAGCACCA+AGG | 0.651227 | 1.3:-57234006 | MS.gene44001:intron |
AGAGAAAATGACTAACGTTG+GGG | 0.657706 | 1.3:-57236973 | None:intergenic |
TTTCTGAAAGATCTAACTGG+TGG | 0.659624 | 1.3:+57234734 | None:intergenic |
TTGTGGGTCCCAAGTTACCA+AGG | 0.660834 | 1.3:-57234513 | MS.gene44001:CDS |
TCGCATAATGAAAGGTTCCG+AGG | 0.668062 | 1.3:-57234133 | MS.gene44001:CDS |
TGCACCATATCTACGTAAGG+TGG | 0.669757 | 1.3:-57234612 | MS.gene44001:CDS |
AAAACTCACTTAGCACGAGG+AGG | 0.704960 | 1.3:+57236696 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAGATTAGATTTTTTTTTA+AGG | - | chr1.3:57234579-57234598 | MS.gene44001:CDS | 10.0% |
!!! | AAGATTAGATTTTTTTTTAA+GGG | - | chr1.3:57234580-57234599 | MS.gene44001:CDS | 10.0% |
!!! | AATAATAGTATTATTTTAGT+TGG | - | chr1.3:57235647-57235666 | MS.gene44001:intron | 10.0% |
!!! | AATTTTATTCAAAAAATTTG+AGG | + | chr1.3:57235324-57235343 | None:intergenic | 10.0% |
!!! | AATTTTTAAAAGAATAAACA+TGG | - | chr1.3:57235477-57235496 | MS.gene44001:intron | 10.0% |
!!! | ATTTTGAATAAGTTTTAATT+AGG | - | chr1.3:57234653-57234672 | MS.gene44001:CDS | 10.0% |
!!! | CTTATAAAAATGTTTTAATT+AGG | - | chr1.3:57234679-57234698 | MS.gene44001:CDS | 10.0% |
!! | AATTAACAATATTATATGAG+TGG | + | chr1.3:57235756-57235775 | None:intergenic | 15.0% |
!! | ATATTATTGTTTAACAAAAC+AGG | + | chr1.3:57235076-57235095 | None:intergenic | 15.0% |
!! | ATTAAAATTCATGTCAATAT+AGG | + | chr1.3:57235350-57235369 | None:intergenic | 15.0% |
!! | ATTTGTGTTTAATTAGAAAT+TGG | - | chr1.3:57235915-57235934 | MS.gene44001:intron | 15.0% |
!! | TGAATAATTAAGTTATATCT+AGG | - | chr1.3:57234386-57234405 | MS.gene44001:intron | 15.0% |
!!! | AAAAAAAATAAAGTATTGGA+TGG | - | chr1.3:57235596-57235615 | MS.gene44001:intron | 15.0% |
!!! | AAATTAGGTTTAAAACATTA+TGG | - | chr1.3:57236890-57236909 | MS.gene44001:CDS | 15.0% |
!!! | AAGTTTAATGTTAGTTTTTA+TGG | + | chr1.3:57235133-57235152 | None:intergenic | 15.0% |
!!! | TGTAATAAAATTGATTTTGA+AGG | + | chr1.3:57235418-57235437 | None:intergenic | 15.0% |
!! | AAGGATAAATAAAGTTGAAA+AGG | - | chr1.3:57235787-57235806 | MS.gene44001:intron | 20.0% |
!! | AATTAAAACAATGAAATGTG+AGG | + | chr1.3:57236584-57236603 | None:intergenic | 20.0% |
!! | ATAGTCATACTCTTATTAAT+TGG | - | chr1.3:57236734-57236753 | MS.gene44001:CDS | 20.0% |
!! | ATCTGTTTAATAAGATTAGT+TGG | - | chr1.3:57236119-57236138 | MS.gene44001:intron | 20.0% |
!! | ATTTGTTTGTGAAAAACTAT+TGG | - | chr1.3:57234853-57234872 | MS.gene44001:intron | 20.0% |
!! | CAATGAATATTGAATTTGTA+GGG | - | chr1.3:57236168-57236187 | MS.gene44001:intron | 20.0% |
!! | CATAATTTACTGTAGTATAA+AGG | - | chr1.3:57235884-57235903 | MS.gene44001:intron | 20.0% |
!! | GTAAATTATGCATGAATTAT+TGG | + | chr1.3:57235874-57235893 | None:intergenic | 20.0% |
!! | TCAAATGCATTTAACAAATT+AGG | - | chr1.3:57236875-57236894 | MS.gene44001:CDS | 20.0% |
!! | TCAATGAATATTGAATTTGT+AGG | - | chr1.3:57236167-57236186 | MS.gene44001:intron | 20.0% |
!! | TCATAGAGTATAGATAATTA+AGG | - | chr1.3:57234513-57234532 | MS.gene44001:CDS | 20.0% |
!!! | AAATTTTTATTGGTTTGAGT+TGG | + | chr1.3:57236654-57236673 | None:intergenic | 20.0% |
!!! | AATGTTTTAATTAGGTTAGA+AGG | - | chr1.3:57234687-57234706 | MS.gene44001:CDS | 20.0% |
!!! | ACTTTATTTATCCTTTTGTT+TGG | + | chr1.3:57235782-57235801 | None:intergenic | 20.0% |
!!! | ATCTAATCTTTTCAATTCAA+TGG | + | chr1.3:57234570-57234589 | None:intergenic | 20.0% |
!!! | CTTTATTTATCCTTTTGTTT+GGG | + | chr1.3:57235781-57235800 | None:intergenic | 20.0% |
!!! | TTTATTTATCCTTTTGTTTG+GGG | + | chr1.3:57235780-57235799 | None:intergenic | 20.0% |
!!! | TTTTTTGAACATGACAATTT+TGG | - | chr1.3:57234797-57234816 | MS.gene44001:intron | 20.0% |
! | AGACTATATAACAATGTGAT+AGG | + | chr1.3:57235847-57235866 | None:intergenic | 25.0% |
! | ATGATCAAAATGTTATGAGT+CGG | + | chr1.3:57236716-57236735 | None:intergenic | 25.0% |
! | TGAACATCAATGATCTTAAT+CGG | + | chr1.3:57235995-57236014 | None:intergenic | 25.0% |
! | TTATCTATACTCTATGAACA+AGG | + | chr1.3:57234510-57234529 | None:intergenic | 25.0% |
!! | AAATTGATTGACCTTTTGAA+CGG | - | chr1.3:57236469-57236488 | MS.gene44001:intron | 25.0% |
!! | AATTTTTCTTGCACATAATC+TGG | + | chr1.3:57235563-57235582 | None:intergenic | 25.0% |
!! | ACGACGTAACAAATTTTTAT+TGG | + | chr1.3:57236664-57236683 | None:intergenic | 25.0% |
!! | ATAATCTGGATGACATTTTT+AGG | + | chr1.3:57235549-57235568 | None:intergenic | 25.0% |
!! | GTTTCTTGTTCCATAATTTT+TGG | - | chr1.3:57234745-57234764 | MS.gene44001:CDS | 25.0% |
!!! | AAAAATAAAGTATTGGATGG+TGG | - | chr1.3:57235599-57235618 | MS.gene44001:intron | 25.0% |
!!! | TTATTTATCCTTTTGTTTGG+GGG | + | chr1.3:57235779-57235798 | None:intergenic | 25.0% |
!!! | TTTCCACAACTATTTTTAAC+AGG | + | chr1.3:57234084-57234103 | None:intergenic | 25.0% |
!!! | TTTTAGTTGGATTTTTTCTG+CGG | - | chr1.3:57235660-57235679 | MS.gene44001:intron | 25.0% |
AAAAATAGTTGTGGAAAGAG+AGG | - | chr1.3:57234087-57234106 | MS.gene44001:intron | 30.0% | |
AAAGAAAAAGACAAGACACT+TGG | - | chr1.3:57235710-57235729 | MS.gene44001:intron | 30.0% | |
ATTGTTAATTACAGCACCAA+GGG | - | chr1.3:57236937-57236956 | MS.gene44001:CDS | 30.0% | |
GAAATGTGAGGTGAAAAAAA+GGG | + | chr1.3:57236572-57236591 | None:intergenic | 30.0% | |
GATGAAGCAGAATCATTTAT+AGG | + | chr1.3:57234156-57234175 | None:intergenic | 30.0% | |
GCAAATTCTGCCAAAAATTA+TGG | + | chr1.3:57234758-57234777 | None:intergenic | 30.0% | |
GGTAACTCTTGTACAATTTA+AGG | + | chr1.3:57236357-57236376 | None:intergenic | 30.0% | |
GTTTGTGATTAAAGATCACA+CGG | - | chr1.3:57234712-57234731 | MS.gene44001:CDS | 30.0% | |
TATTGTTAATTACAGCACCA+AGG | - | chr1.3:57236936-57236955 | MS.gene44001:CDS | 30.0% | |
TCACCTGTTAAAAATAGTTG+TGG | - | chr1.3:57234078-57234097 | MS.gene44001:intron | 30.0% | |
TGAAATGTGAGGTGAAAAAA+AGG | + | chr1.3:57236573-57236592 | None:intergenic | 30.0% | |
TGATCAAAATGTTATGAGTC+GGG | + | chr1.3:57236715-57236734 | None:intergenic | 30.0% | |
! | ATTGGCAATTTGAGTTTGAT+TGG | - | chr1.3:57234871-57234890 | MS.gene44001:intron | 30.0% |
! | GTACAGCTTGATAAATTTTG+AGG | - | chr1.3:57234008-57234027 | MS.gene44001:intron | 30.0% |
! | TTCTTTCTGAAAGATCTAAC+TGG | + | chr1.3:57236214-57236233 | None:intergenic | 30.0% |
! | TTTGAACATGACAATTTTGG+TGG | - | chr1.3:57234800-57234819 | MS.gene44001:intron | 30.0% |
!! | TTTATTGGTTTGAGTTGGTT+CGG | + | chr1.3:57236649-57236668 | None:intergenic | 30.0% |
AAGATCACACGGTTACAATT+AGG | - | chr1.3:57234723-57234742 | MS.gene44001:CDS | 35.0% | |
ACAACGTATGGTAATCAATC+AGG | - | chr1.3:57235500-57235519 | MS.gene44001:intron | 35.0% | |
AGGGGAATCTTATTAGAAAG+AGG | - | chr1.3:57234470-57234489 | MS.gene44001:CDS | 35.0% | |
ATGAAGACAAAGATGGTGAT+TGG | - | chr1.3:57236512-57236531 | MS.gene44001:intron | 35.0% | |
ATTTGTGTGCAACACTATTG+AGG | - | chr1.3:57234450-57234469 | MS.gene44001:CDS | 35.0% | |
CAACGTATGGTAATCAATCA+GGG | - | chr1.3:57235501-57235520 | MS.gene44001:intron | 35.0% | |
CATAATCAGAACCGTTCAAA+AGG | + | chr1.3:57236483-57236502 | None:intergenic | 35.0% | |
CATCAATGATCTTAATCGGA+TGG | + | chr1.3:57235991-57236010 | None:intergenic | 35.0% | |
CCAACATATGAAGACAAAGA+TGG | - | chr1.3:57236505-57236524 | MS.gene44001:intron | 35.0% | |
CCATCTTTGTCTTCATATGT+TGG | + | chr1.3:57236508-57236527 | None:intergenic | 35.0% | |
CCTTCACAATTGACAATTGT+GGG | - | chr1.3:57236413-57236432 | MS.gene44001:intron | 35.0% | |
GAATAAACATGGACAACGTA+TGG | - | chr1.3:57235488-57235507 | MS.gene44001:intron | 35.0% | |
GCTTTCATTCATAAAGTCCT+TGG | + | chr1.3:57236449-57236468 | None:intergenic | 35.0% | |
GTTACGTCGTGTAACAAATT+TGG | - | chr1.3:57236674-57236693 | MS.gene44001:intron | 35.0% | |
TCCTTCACAATTGACAATTG+TGG | - | chr1.3:57236412-57236431 | MS.gene44001:intron | 35.0% | |
TGTTAATTCCCCCAAACAAA+AGG | - | chr1.3:57235768-57235787 | MS.gene44001:intron | 35.0% | |
TTTGTGTGCAACACTATTGA+GGG | - | chr1.3:57234451-57234470 | MS.gene44001:CDS | 35.0% | |
! | CATAAAGTCCTTGGTAACTT+GGG | + | chr1.3:57236440-57236459 | None:intergenic | 35.0% |
! | TCATAAAGTCCTTGGTAACT+TGG | + | chr1.3:57236441-57236460 | None:intergenic | 35.0% |
! | TTTCTGAAAGATCTAACTGG+TGG | + | chr1.3:57236211-57236230 | None:intergenic | 35.0% |
!!! | GTTTTGTTTGAGACTGAGAT+AGG | - | chr1.3:57234408-57234427 | MS.gene44001:CDS | 35.0% |
AAGCGTCTTCGCATAATGAA+AGG | - | chr1.3:57236801-57236820 | MS.gene44001:CDS | 40.0% | |
AATTTGTAGGGCACAAGTTG+TGG | - | chr1.3:57236180-57236199 | MS.gene44001:intron | 40.0% | |
AGAAAAACTCACTTAGCACG+AGG | + | chr1.3:57234252-57234271 | None:intergenic | 40.0% | |
ATTTGTAGGGCACAAGTTGT+GGG | - | chr1.3:57236181-57236200 | MS.gene44001:intron | 40.0% | |
CCCACAATTGTCAATTGTGA+AGG | + | chr1.3:57236416-57236435 | None:intergenic | 40.0% | |
GCTTCTGTAGCTGAAAACAA+AGG | - | chr1.3:57234189-57234208 | MS.gene44001:intron | 40.0% | |
TATGGTAATCAATCAGGGCA+TGG | - | chr1.3:57235506-57235525 | MS.gene44001:intron | 40.0% | |
TCAACGACGATAGAGAATCA+TGG | - | chr1.3:57236045-57236064 | MS.gene44001:intron | 40.0% | |
TTGTGTGCAACACTATTGAG+GGG | - | chr1.3:57234452-57234471 | MS.gene44001:CDS | 40.0% | |
TTTGTTAAGGTGAGCATGGA+TGG | - | chr1.3:57236307-57236326 | MS.gene44001:intron | 40.0% | |
! | AGCATTTGTTAAGGTGAGCA+TGG | - | chr1.3:57236303-57236322 | MS.gene44001:intron | 40.0% |
! | TGGGAATGGAGCATTTGTTA+AGG | - | chr1.3:57236294-57236313 | MS.gene44001:intron | 40.0% |
!! | TGTTATGAGTCGGGTTGAAT+TGG | + | chr1.3:57236706-57236725 | None:intergenic | 40.0% |
!!! | GATTTTTTCTGCGGATAGCA+TGG | - | chr1.3:57235669-57235688 | MS.gene44001:intron | 40.0% |
AAAACTCACTTAGCACGAGG+AGG | + | chr1.3:57234249-57234268 | None:intergenic | 45.0% | |
AGGTCCACCTTACGTAGATA+TGG | + | chr1.3:57236337-57236356 | None:intergenic | 45.0% | |
ATGAAAGGTTCCGAGGCAAT+TGG | - | chr1.3:57236816-57236835 | MS.gene44001:CDS | 45.0% | |
GATGGTGATTGGATGCTTGT+TGG | - | chr1.3:57236523-57236542 | MS.gene44001:intron | 45.0% | |
GCATAAATTCGTGCAGTCGA+TGG | - | chr1.3:57236084-57236103 | MS.gene44001:intron | 45.0% | |
TCGCATAATGAAAGGTTCCG+AGG | - | chr1.3:57236809-57236828 | MS.gene44001:CDS | 45.0% | |
TGAAAGGTTCCGAGGCAATT+GGG | - | chr1.3:57236817-57236836 | MS.gene44001:CDS | 45.0% | |
TGCACCATATCTACGTAAGG+TGG | - | chr1.3:57236330-57236349 | MS.gene44001:intron | 45.0% | |
TGGTGCACCATATCTACGTA+AGG | - | chr1.3:57236327-57236346 | MS.gene44001:intron | 45.0% | |
TTTACCTAGCCCAATTGCCT+CGG | + | chr1.3:57236829-57236848 | None:intergenic | 45.0% | |
! | ATAAGAGCACAAGTGGTGGT+GGG | - | chr1.3:57236275-57236294 | MS.gene44001:intron | 45.0% |
! | GAAGCAGATAAGAGCACAAG+TGG | - | chr1.3:57236268-57236287 | MS.gene44001:intron | 45.0% |
! | TTGCATTTTTCCACTGCCCT+TGG | + | chr1.3:57236956-57236975 | None:intergenic | 45.0% |
! | TTTTCTGCGGATAGCATGGT+TGG | - | chr1.3:57235673-57235692 | MS.gene44001:intron | 45.0% |
!! | AAGTATTGGATGGTGGCTGA+AGG | - | chr1.3:57235606-57235625 | MS.gene44001:intron | 45.0% |
!! | GCTTGTTGGTGATGTTCCAT+GGG | - | chr1.3:57236537-57236556 | MS.gene44001:intron | 45.0% |
!! | GTTGGTTCGGTTCAGATCAT+CGG | + | chr1.3:57236636-57236655 | None:intergenic | 45.0% |
!! | TGCTTGTTGGTGATGTTCCA+TGG | - | chr1.3:57236536-57236555 | MS.gene44001:intron | 45.0% |
!! | AAATAAAAAAAATAAAGTAT+TGG | - | chr1.3:57235592-57235611 | MS.gene44001:intron | 5.0% |
AAAAGGGCTACTCACTCCCA+TGG | + | chr1.3:57236556-57236575 | None:intergenic | 50.0% | |
AATCAATCAGGGCATGGTGG+AGG | - | chr1.3:57235512-57235531 | MS.gene44001:intron | 50.0% | |
AATTACAGCACCAAGGGCAG+TGG | - | chr1.3:57236943-57236962 | MS.gene44001:CDS | 50.0% | |
GGTAATCAATCAGGGCATGG+TGG | - | chr1.3:57235509-57235528 | MS.gene44001:intron | 50.0% | |
GTGACACGCACACAAGACAA+GGG | + | chr1.3:57235825-57235844 | None:intergenic | 50.0% | |
TGAATGCGTGCAGTCGTTGA+CGG | + | chr1.3:57235949-57235968 | None:intergenic | 50.0% | |
TGGAAGACCGAGTCGTAACT+CGG | + | chr1.3:57234037-57234056 | None:intergenic | 50.0% | |
TGGTGGCTGAAGGAATAGGT+TGG | - | chr1.3:57235616-57235635 | MS.gene44001:intron | 50.0% | |
TTGTGGGTCCCAAGTTACCA+AGG | - | chr1.3:57236429-57236448 | MS.gene44001:intron | 50.0% | |
! | CGGATAGCATGGTTGGTTGT+CGG | - | chr1.3:57235680-57235699 | MS.gene44001:intron | 50.0% |
! | GATAAGAGCACAAGTGGTGG+TGG | - | chr1.3:57236274-57236293 | MS.gene44001:intron | 50.0% |
! | GCAGATAAGAGCACAAGTGG+TGG | - | chr1.3:57236271-57236290 | MS.gene44001:intron | 50.0% |
! | GGATAGCATGGTTGGTTGTC+GGG | - | chr1.3:57235681-57235700 | MS.gene44001:intron | 50.0% |
! | TGGATGGTGGCTGAAGGAAT+AGG | - | chr1.3:57235612-57235631 | MS.gene44001:intron | 50.0% |
ACTCACTTAGCACGAGGAGG+AGG | + | chr1.3:57234246-57234265 | None:intergenic | 55.0% | |
CTTCCAGGTGCAGGTGATCA+CGG | - | chr1.3:57234051-57234070 | MS.gene44001:intron | 55.0% | |
GAGGAGACCGAGTTACGACT+CGG | - | chr1.3:57234027-57234046 | MS.gene44001:intron | 55.0% | |
GGTGACACGCACACAAGACA+AGG | + | chr1.3:57235826-57235845 | None:intergenic | 55.0% | |
GTAGGGCACAAGTTGTGGGA+TGG | - | chr1.3:57236185-57236204 | MS.gene44001:intron | 55.0% | |
!! | AGCACAAGTGGTGGTGGGAA+TGG | - | chr1.3:57236280-57236299 | MS.gene44001:intron | 55.0% |
!! | GAGTTACGACTCGGTCTTCC+AGG | - | chr1.3:57234036-57234055 | MS.gene44001:intron | 55.0% |
CCAAGAGCTGTCAGATGCGC+TGG | - | chr1.3:57236375-57236394 | MS.gene44001:intron | 60.0% | |
CCAGCGCATCTGACAGCTCT+TGG | + | chr1.3:57236378-57236397 | None:intergenic | 60.0% | |
GGTTCCGAGGCAATTGGGCT+AGG | - | chr1.3:57236822-57236841 | MS.gene44001:CDS | 60.0% | |
TCTCCGTGATCACCTGCACC+TGG | + | chr1.3:57234057-57234076 | None:intergenic | 60.0% | |
! | GCACACAAGACAAGGGCGTG+TGG | + | chr1.3:57235818-57235837 | None:intergenic | 60.0% |
!! | CGACTCGGTCTTCCAGGTGC+AGG | - | chr1.3:57234042-57234061 | MS.gene44001:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 57233976 | 57236988 | 57233976 | ID=MS.gene44001 |
chr1.3 | mRNA | 57233976 | 57236988 | 57233976 | ID=MS.gene44001.t1;Parent=MS.gene44001 |
chr1.3 | exon | 57236705 | 57236988 | 57236705 | ID=MS.gene44001.t1.exon1;Parent=MS.gene44001.t1 |
chr1.3 | CDS | 57236705 | 57236988 | 57236705 | ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1 |
chr1.3 | exon | 57234404 | 57234775 | 57234404 | ID=MS.gene44001.t1.exon2;Parent=MS.gene44001.t1 |
chr1.3 | CDS | 57234404 | 57234775 | 57234404 | ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1 |
chr1.3 | exon | 57234121 | 57234182 | 57234121 | ID=MS.gene44001.t1.exon3;Parent=MS.gene44001.t1 |
chr1.3 | CDS | 57234121 | 57234182 | 57234121 | ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1 |
chr1.3 | exon | 57233976 | 57234013 | 57233976 | ID=MS.gene44001.t1.exon4;Parent=MS.gene44001.t1 |
chr1.3 | CDS | 57233976 | 57234013 | 57233976 | ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1 |
Gene Sequence |
Protein sequence |