AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene44001


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44001.t1 MTR_1g080860 97.233 253 5 2 1 251 1 253 0.0 500
MS.gene44001.t1 MTR_1g080860 96.694 242 6 2 1 240 1 242 2.13e-172 474
MS.gene44001.t1 MTR_1g093240 65.289 242 66 5 15 251 8 236 7.61e-100 291
MS.gene44001.t1 MTR_1g070520 65.844 243 63 6 17 251 15 245 1.61e-97 285
MS.gene44001.t1 MTR_7g096090 61.066 244 84 4 15 251 11 250 1.83e-90 268
MS.gene44001.t1 MTR_1g093240 63.913 230 65 5 15 239 8 224 3.11e-90 266
MS.gene44001.t1 MTR_1g093240 60.952 210 64 5 15 219 8 204 1.04e-75 228
MS.gene44001.t1 MTR_5g030710 47.917 288 96 9 15 251 51 335 2.53e-75 232
MS.gene44001.t1 MTR_6g488150 50.190 263 80 8 15 250 15 253 2.87e-74 226
MS.gene44001.t1 MTR_8g103030 48.029 279 92 7 15 250 24 292 2.89e-74 228
MS.gene44001.t1 MTR_8g067530 46.897 290 93 8 15 251 75 356 2.78e-73 227
MS.gene44001.t1 MTR_2g101500 45.603 307 94 9 13 250 23 325 1.25e-71 222
MS.gene44001.t1 MTR_5g067350 47.719 285 97 7 15 250 65 346 3.68e-71 222
MS.gene44001.t1 MTR_1g070830 47.162 229 80 5 15 240 12 202 3.09e-55 176
MS.gene44001.t1 MTR_1g040675 43.805 226 84 6 15 240 1 183 6.01e-53 170
MS.gene44001.t1 MTR_1g076270 46.222 225 64 8 15 239 11 178 1.33e-52 169
MS.gene44001.t1 MTR_1g093350 46.222 225 64 8 15 239 11 178 1.33e-52 169
MS.gene44001.t1 MTR_1g040675 40.488 205 79 7 15 219 1 162 2.39e-40 137
MS.gene44001.t1 MTR_1g069495 43.716 183 71 4 96 246 81 263 8.52e-37 131
MS.gene44001.t1 MTR_4g011880 41.991 231 68 9 15 243 6 172 3.55e-36 126
MS.gene44001.t1 MTR_2g102490 40.541 222 72 10 18 234 17 183 9.04e-35 124
MS.gene44001.t1 MTR_2g100780 36.220 254 122 10 21 242 18 263 5.04e-33 121
MS.gene44001.t1 MTR_2g100780 36.327 245 118 9 21 235 18 254 5.08e-33 121
MS.gene44001.t1 MTR_8g014520 35.223 247 126 10 21 235 16 260 8.84e-32 118
MS.gene44001.t1 MTR_8g014520 35.223 247 126 10 21 235 16 260 1.05e-31 117
MS.gene44001.t1 MTR_6g488150 41.848 184 58 7 15 173 15 174 9.68e-31 113
MS.gene44001.t1 MTR_5g067350 39.423 208 75 6 15 173 65 270 8.59e-28 107
MS.gene44001.t1 MTR_4g124300 35.915 142 59 5 95 233 69 181 5.86e-18 79.3
MS.gene44001.t1 MTR_3g106850 29.787 141 80 4 97 236 88 210 7.07e-18 79.7
MS.gene44001.t1 MTR_1g085750 39.796 98 47 3 135 232 85 170 2.69e-15 72.0
MS.gene44001.t1 MTR_4g115075 27.815 151 86 3 82 232 78 205 3.80e-15 72.4
MS.gene44001.t1 MTR_7g110790 38.095 105 45 3 132 232 67 155 4.17e-15 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene44001.t1 AT3G04730 66.000 250 59 6 14 251 1 236 5.48e-103 299
MS.gene44001.t1 AT4G14550 64.706 238 73 4 15 251 1 228 6.66e-99 288
MS.gene44001.t1 AT3G23050 62.195 246 78 6 14 251 5 243 2.29e-97 285
MS.gene44001.t1 AT4G14550 63.436 227 72 4 15 240 1 217 7.35e-91 268
MS.gene44001.t1 AT1G04250 57.741 239 83 6 15 251 7 229 7.96e-88 260
MS.gene44001.t1 AT4G29080 51.799 278 93 9 9 250 32 304 1.16e-78 239
MS.gene44001.t1 AT4G14550 60.976 205 69 4 15 218 1 195 7.12e-76 228
MS.gene44001.t1 AT3G23050 58.216 213 75 5 14 219 5 210 9.56e-75 226
MS.gene44001.t1 AT5G65670 48.264 288 101 9 7 251 54 336 1.01e-68 215
MS.gene44001.t1 AT2G22670 45.161 279 103 6 15 250 47 318 3.00e-67 211
MS.gene44001.t1 AT2G22670 45.161 279 103 6 15 250 47 318 3.00e-67 211
MS.gene44001.t1 AT2G22670 45.161 279 103 6 15 250 64 335 3.57e-67 211
MS.gene44001.t1 AT5G65670 47.931 290 101 10 7 251 54 338 1.16e-66 210
MS.gene44001.t1 AT2G22670 44.444 279 103 7 15 250 47 316 4.95e-64 202
MS.gene44001.t1 AT2G22670 44.444 279 103 7 15 250 47 316 4.95e-64 202
MS.gene44001.t1 AT1G04240 47.137 227 76 7 14 240 4 186 2.82e-60 189
MS.gene44001.t1 AT1G04240 47.137 227 76 7 14 240 104 286 5.46e-59 189
MS.gene44001.t1 AT5G43700 48.899 227 62 8 14 240 10 182 3.90e-58 183
MS.gene44001.t1 AT4G14550 57.500 160 57 4 15 173 1 150 1.20e-47 156
MS.gene44001.t1 AT3G23030 41.453 234 66 5 10 239 4 170 1.72e-45 150
MS.gene44001.t1 AT3G23050 53.293 167 64 5 14 173 5 164 2.73e-45 149
MS.gene44001.t1 AT3G23030 41.453 234 66 5 10 239 91 257 1.18e-44 151
MS.gene44001.t1 AT3G15540 42.739 241 80 10 15 246 6 197 1.60e-43 146
MS.gene44001.t1 AT4G14560 40.991 222 67 6 15 236 7 164 1.81e-43 145
MS.gene44001.t1 AT2G33310 43.684 190 85 6 73 245 53 237 4.27e-39 136
MS.gene44001.t1 AT1G15580 40.724 221 61 7 15 234 8 159 1.42e-38 132
MS.gene44001.t1 AT2G33310 43.158 190 85 6 73 245 53 236 1.05e-37 132
MS.gene44001.t1 AT2G33310 43.158 190 85 6 73 245 53 236 1.05e-37 132
MS.gene44001.t1 AT1G04550 43.085 188 70 6 83 246 56 230 3.21e-37 131
MS.gene44001.t1 AT1G52830 38.938 226 92 8 15 240 6 185 9.15e-36 126
MS.gene44001.t1 AT3G16500 36.290 248 117 9 8 235 26 252 5.32e-35 126
MS.gene44001.t1 AT3G16500 36.290 248 117 9 8 235 26 252 5.36e-35 126
MS.gene44001.t1 AT4G28640 45.283 159 70 5 96 240 87 242 5.46e-33 120
MS.gene44001.t1 AT4G28640 45.223 157 69 5 96 238 87 240 1.04e-32 120
MS.gene44001.t1 AT4G28640 45.513 156 68 5 97 238 88 240 9.42e-32 119
MS.gene44001.t1 AT1G51950 36.000 250 107 9 10 235 30 250 3.80e-31 116
MS.gene44001.t1 AT5G25890 36.842 190 93 5 54 242 7 170 1.33e-27 104
MS.gene44001.t1 AT1G04100 36.842 247 122 8 24 239 16 259 7.74e-27 104
MS.gene44001.t1 AT3G17600 34.848 132 61 3 101 232 48 154 9.39e-22 89.0
MS.gene44001.t1 AT2G46990 39.583 96 45 1 135 230 86 168 1.05e-16 75.9
MS.gene44001.t1 AT3G62100 38.776 98 47 1 135 232 84 168 1.42e-16 75.5
MS.gene44001.t1 AT4G32280 27.684 177 81 4 85 232 82 240 5.37e-16 75.5
MS.gene44001.t1 AT4G32280 35.714 98 45 2 135 232 119 198 9.10e-16 73.9
MS.gene44001.t1 AT1G80390 33.553 152 55 4 20 171 19 124 3.80e-13 65.1
MS.gene44001.t1 AT2G46990 38.824 85 39 1 135 219 86 157 5.49e-12 62.8
MS.gene44001.t1 AT3G62100 37.647 85 40 1 135 219 84 155 1.70e-11 61.2

Find 56 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTAACTCTTGTACAATTTA+AGG 0.136546 1.3:+57234588 None:intergenic
GATGAAGCAGAATCATTTAT+AGG 0.292641 1.3:+57236789 None:intergenic
TCATAAAGTCCTTGGTAACT+TGG 0.357262 1.3:+57234504 None:intergenic
GAGTTACGACTCGGTCTTCC+AGG 0.382644 1.3:-57236906 MS.gene44001:CDS
TTCTTTCTGAAAGATCTAAC+TGG 0.401360 1.3:+57234731 None:intergenic
AGGTCCACCTTACGTAGATA+TGG 0.411796 1.3:+57234608 None:intergenic
ATGAAAGGTTCCGAGGCAAT+TGG 0.416704 1.3:-57234126 MS.gene44001:CDS
CCTTCACAATTGACAATTGT+GGG 0.417767 1.3:-57234529 MS.gene44001:CDS
AAGAGAAAATGACTAACGTT+GGG 0.423757 1.3:-57236974 None:intergenic
GCTTTCATTCATAAAGTCCT+TGG 0.434299 1.3:+57234496 None:intergenic
TGCTTGTTGGTGATGTTCCA+TGG 0.442945 1.3:-57234406 MS.gene44001:CDS
AGCACAAGTGGTGGTGGGAA+TGG 0.463834 1.3:-57234662 MS.gene44001:CDS
CCAGCGCATCTGACAGCTCT+TGG 0.472063 1.3:+57234567 None:intergenic
TGAAAGGTTCCGAGGCAATT+GGG 0.476415 1.3:-57234125 MS.gene44001:CDS
AATTTGTAGGGCACAAGTTG+TGG 0.477874 1.3:-57234762 MS.gene44001:intron
CATAATCAGAACCGTTCAAA+AGG 0.478352 1.3:+57234462 None:intergenic
CCATCTTTGTCTTCATATGT+TGG 0.478384 1.3:+57234437 None:intergenic
CCAAGAGCTGTCAGATGCGC+TGG 0.479602 1.3:-57234567 MS.gene44001:CDS
GATAAGAGCACAAGTGGTGG+TGG 0.485348 1.3:-57234668 MS.gene44001:CDS
TCCTTCACAATTGACAATTG+TGG 0.492530 1.3:-57234530 MS.gene44001:CDS
ATGAAGACAAAGATGGTGAT+TGG 0.495668 1.3:-57234430 MS.gene44001:CDS
GATGGTGATTGGATGCTTGT+TGG 0.521825 1.3:-57234419 MS.gene44001:CDS
GGTTCCGAGGCAATTGGGCT+AGG 0.522558 1.3:-57234120 MS.gene44001:intron
CATAAAGTCCTTGGTAACTT+GGG 0.531177 1.3:+57234505 None:intergenic
TCTCCGTGATCACCTGCACC+TGG 0.533867 1.3:+57236888 None:intergenic
GCTTGTTGGTGATGTTCCAT+GGG 0.534588 1.3:-57234405 MS.gene44001:CDS
TTTACCTAGCCCAATTGCCT+CGG 0.542690 1.3:+57234116 None:intergenic
TGGAAGACCGAGTCGTAACT+CGG 0.546250 1.3:+57236908 None:intergenic
TGGGAATGGAGCATTTGTTA+AGG 0.549372 1.3:-57234648 MS.gene44001:CDS
ATTTGTAGGGCACAAGTTGT+GGG 0.551340 1.3:-57234761 MS.gene44001:intron
CTTCCAGGTGCAGGTGATCA+CGG 0.551547 1.3:-57236891 MS.gene44001:CDS
AATTACAGCACCAAGGGCAG+TGG 0.556761 1.3:-57233999 MS.gene44001:intron
CGACTCGGTCTTCCAGGTGC+AGG 0.557067 1.3:-57236900 MS.gene44001:CDS
AAAGAGAAAATGACTAACGT+TGG 0.560324 1.3:-57236975 None:intergenic
ACTCACTTAGCACGAGGAGG+AGG 0.560950 1.3:+57236699 None:intergenic
TTTGTTAAGGTGAGCATGGA+TGG 0.571730 1.3:-57234635 MS.gene44001:CDS
GAAGCAGATAAGAGCACAAG+TGG 0.581742 1.3:-57234674 MS.gene44001:CDS
ATTGTTAATTACAGCACCAA+GGG 0.584897 1.3:-57234005 MS.gene44001:intron
AAAAGGGCTACTCACTCCCA+TGG 0.587502 1.3:+57234389 None:intergenic
CCAACATATGAAGACAAAGA+TGG 0.591098 1.3:-57234437 MS.gene44001:CDS
GTAGGGCACAAGTTGTGGGA+TGG 0.599917 1.3:-57234757 MS.gene44001:intron
AGCATTTGTTAAGGTGAGCA+TGG 0.602441 1.3:-57234639 MS.gene44001:CDS
CCCACAATTGTCAATTGTGA+AGG 0.603780 1.3:+57234529 None:intergenic
TGGTGCACCATATCTACGTA+AGG 0.613344 1.3:-57234615 MS.gene44001:CDS
GCAGATAAGAGCACAAGTGG+TGG 0.620410 1.3:-57234671 MS.gene44001:CDS
AAGCGTCTTCGCATAATGAA+AGG 0.624465 1.3:-57234141 MS.gene44001:CDS
GCTTCTGTAGCTGAAAACAA+AGG 0.627006 1.3:-57236753 MS.gene44001:CDS
ATAAGAGCACAAGTGGTGGT+GGG 0.631680 1.3:-57234667 MS.gene44001:CDS
GAGGAGACCGAGTTACGACT+CGG 0.639589 1.3:-57236915 MS.gene44001:CDS
TATTGTTAATTACAGCACCA+AGG 0.651227 1.3:-57234006 MS.gene44001:intron
AGAGAAAATGACTAACGTTG+GGG 0.657706 1.3:-57236973 None:intergenic
TTTCTGAAAGATCTAACTGG+TGG 0.659624 1.3:+57234734 None:intergenic
TTGTGGGTCCCAAGTTACCA+AGG 0.660834 1.3:-57234513 MS.gene44001:CDS
TCGCATAATGAAAGGTTCCG+AGG 0.668062 1.3:-57234133 MS.gene44001:CDS
TGCACCATATCTACGTAAGG+TGG 0.669757 1.3:-57234612 MS.gene44001:CDS
AAAACTCACTTAGCACGAGG+AGG 0.704960 1.3:+57236696 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAGATTAGATTTTTTTTTA+AGG - chr1.3:57234579-57234598 MS.gene44001:CDS 10.0%
!!! AAGATTAGATTTTTTTTTAA+GGG - chr1.3:57234580-57234599 MS.gene44001:CDS 10.0%
!!! AATAATAGTATTATTTTAGT+TGG - chr1.3:57235647-57235666 MS.gene44001:intron 10.0%
!!! AATTTTATTCAAAAAATTTG+AGG + chr1.3:57235324-57235343 None:intergenic 10.0%
!!! AATTTTTAAAAGAATAAACA+TGG - chr1.3:57235477-57235496 MS.gene44001:intron 10.0%
!!! ATTTTGAATAAGTTTTAATT+AGG - chr1.3:57234653-57234672 MS.gene44001:CDS 10.0%
!!! CTTATAAAAATGTTTTAATT+AGG - chr1.3:57234679-57234698 MS.gene44001:CDS 10.0%
!! AATTAACAATATTATATGAG+TGG + chr1.3:57235756-57235775 None:intergenic 15.0%
!! ATATTATTGTTTAACAAAAC+AGG + chr1.3:57235076-57235095 None:intergenic 15.0%
!! ATTAAAATTCATGTCAATAT+AGG + chr1.3:57235350-57235369 None:intergenic 15.0%
!! ATTTGTGTTTAATTAGAAAT+TGG - chr1.3:57235915-57235934 MS.gene44001:intron 15.0%
!! TGAATAATTAAGTTATATCT+AGG - chr1.3:57234386-57234405 MS.gene44001:intron 15.0%
!!! AAAAAAAATAAAGTATTGGA+TGG - chr1.3:57235596-57235615 MS.gene44001:intron 15.0%
!!! AAATTAGGTTTAAAACATTA+TGG - chr1.3:57236890-57236909 MS.gene44001:CDS 15.0%
!!! AAGTTTAATGTTAGTTTTTA+TGG + chr1.3:57235133-57235152 None:intergenic 15.0%
!!! TGTAATAAAATTGATTTTGA+AGG + chr1.3:57235418-57235437 None:intergenic 15.0%
!! AAGGATAAATAAAGTTGAAA+AGG - chr1.3:57235787-57235806 MS.gene44001:intron 20.0%
!! AATTAAAACAATGAAATGTG+AGG + chr1.3:57236584-57236603 None:intergenic 20.0%
!! ATAGTCATACTCTTATTAAT+TGG - chr1.3:57236734-57236753 MS.gene44001:CDS 20.0%
!! ATCTGTTTAATAAGATTAGT+TGG - chr1.3:57236119-57236138 MS.gene44001:intron 20.0%
!! ATTTGTTTGTGAAAAACTAT+TGG - chr1.3:57234853-57234872 MS.gene44001:intron 20.0%
!! CAATGAATATTGAATTTGTA+GGG - chr1.3:57236168-57236187 MS.gene44001:intron 20.0%
!! CATAATTTACTGTAGTATAA+AGG - chr1.3:57235884-57235903 MS.gene44001:intron 20.0%
!! GTAAATTATGCATGAATTAT+TGG + chr1.3:57235874-57235893 None:intergenic 20.0%
!! TCAAATGCATTTAACAAATT+AGG - chr1.3:57236875-57236894 MS.gene44001:CDS 20.0%
!! TCAATGAATATTGAATTTGT+AGG - chr1.3:57236167-57236186 MS.gene44001:intron 20.0%
!! TCATAGAGTATAGATAATTA+AGG - chr1.3:57234513-57234532 MS.gene44001:CDS 20.0%
!!! AAATTTTTATTGGTTTGAGT+TGG + chr1.3:57236654-57236673 None:intergenic 20.0%
!!! AATGTTTTAATTAGGTTAGA+AGG - chr1.3:57234687-57234706 MS.gene44001:CDS 20.0%
!!! ACTTTATTTATCCTTTTGTT+TGG + chr1.3:57235782-57235801 None:intergenic 20.0%
!!! ATCTAATCTTTTCAATTCAA+TGG + chr1.3:57234570-57234589 None:intergenic 20.0%
!!! CTTTATTTATCCTTTTGTTT+GGG + chr1.3:57235781-57235800 None:intergenic 20.0%
!!! TTTATTTATCCTTTTGTTTG+GGG + chr1.3:57235780-57235799 None:intergenic 20.0%
!!! TTTTTTGAACATGACAATTT+TGG - chr1.3:57234797-57234816 MS.gene44001:intron 20.0%
! AGACTATATAACAATGTGAT+AGG + chr1.3:57235847-57235866 None:intergenic 25.0%
! ATGATCAAAATGTTATGAGT+CGG + chr1.3:57236716-57236735 None:intergenic 25.0%
! TGAACATCAATGATCTTAAT+CGG + chr1.3:57235995-57236014 None:intergenic 25.0%
! TTATCTATACTCTATGAACA+AGG + chr1.3:57234510-57234529 None:intergenic 25.0%
!! AAATTGATTGACCTTTTGAA+CGG - chr1.3:57236469-57236488 MS.gene44001:intron 25.0%
!! AATTTTTCTTGCACATAATC+TGG + chr1.3:57235563-57235582 None:intergenic 25.0%
!! ACGACGTAACAAATTTTTAT+TGG + chr1.3:57236664-57236683 None:intergenic 25.0%
!! ATAATCTGGATGACATTTTT+AGG + chr1.3:57235549-57235568 None:intergenic 25.0%
!! GTTTCTTGTTCCATAATTTT+TGG - chr1.3:57234745-57234764 MS.gene44001:CDS 25.0%
!!! AAAAATAAAGTATTGGATGG+TGG - chr1.3:57235599-57235618 MS.gene44001:intron 25.0%
!!! TTATTTATCCTTTTGTTTGG+GGG + chr1.3:57235779-57235798 None:intergenic 25.0%
!!! TTTCCACAACTATTTTTAAC+AGG + chr1.3:57234084-57234103 None:intergenic 25.0%
!!! TTTTAGTTGGATTTTTTCTG+CGG - chr1.3:57235660-57235679 MS.gene44001:intron 25.0%
AAAAATAGTTGTGGAAAGAG+AGG - chr1.3:57234087-57234106 MS.gene44001:intron 30.0%
AAAGAAAAAGACAAGACACT+TGG - chr1.3:57235710-57235729 MS.gene44001:intron 30.0%
ATTGTTAATTACAGCACCAA+GGG - chr1.3:57236937-57236956 MS.gene44001:CDS 30.0%
GAAATGTGAGGTGAAAAAAA+GGG + chr1.3:57236572-57236591 None:intergenic 30.0%
GATGAAGCAGAATCATTTAT+AGG + chr1.3:57234156-57234175 None:intergenic 30.0%
GCAAATTCTGCCAAAAATTA+TGG + chr1.3:57234758-57234777 None:intergenic 30.0%
GGTAACTCTTGTACAATTTA+AGG + chr1.3:57236357-57236376 None:intergenic 30.0%
GTTTGTGATTAAAGATCACA+CGG - chr1.3:57234712-57234731 MS.gene44001:CDS 30.0%
TATTGTTAATTACAGCACCA+AGG - chr1.3:57236936-57236955 MS.gene44001:CDS 30.0%
TCACCTGTTAAAAATAGTTG+TGG - chr1.3:57234078-57234097 MS.gene44001:intron 30.0%
TGAAATGTGAGGTGAAAAAA+AGG + chr1.3:57236573-57236592 None:intergenic 30.0%
TGATCAAAATGTTATGAGTC+GGG + chr1.3:57236715-57236734 None:intergenic 30.0%
! ATTGGCAATTTGAGTTTGAT+TGG - chr1.3:57234871-57234890 MS.gene44001:intron 30.0%
! GTACAGCTTGATAAATTTTG+AGG - chr1.3:57234008-57234027 MS.gene44001:intron 30.0%
! TTCTTTCTGAAAGATCTAAC+TGG + chr1.3:57236214-57236233 None:intergenic 30.0%
! TTTGAACATGACAATTTTGG+TGG - chr1.3:57234800-57234819 MS.gene44001:intron 30.0%
!! TTTATTGGTTTGAGTTGGTT+CGG + chr1.3:57236649-57236668 None:intergenic 30.0%
AAGATCACACGGTTACAATT+AGG - chr1.3:57234723-57234742 MS.gene44001:CDS 35.0%
ACAACGTATGGTAATCAATC+AGG - chr1.3:57235500-57235519 MS.gene44001:intron 35.0%
AGGGGAATCTTATTAGAAAG+AGG - chr1.3:57234470-57234489 MS.gene44001:CDS 35.0%
ATGAAGACAAAGATGGTGAT+TGG - chr1.3:57236512-57236531 MS.gene44001:intron 35.0%
ATTTGTGTGCAACACTATTG+AGG - chr1.3:57234450-57234469 MS.gene44001:CDS 35.0%
CAACGTATGGTAATCAATCA+GGG - chr1.3:57235501-57235520 MS.gene44001:intron 35.0%
CATAATCAGAACCGTTCAAA+AGG + chr1.3:57236483-57236502 None:intergenic 35.0%
CATCAATGATCTTAATCGGA+TGG + chr1.3:57235991-57236010 None:intergenic 35.0%
CCAACATATGAAGACAAAGA+TGG - chr1.3:57236505-57236524 MS.gene44001:intron 35.0%
CCATCTTTGTCTTCATATGT+TGG + chr1.3:57236508-57236527 None:intergenic 35.0%
CCTTCACAATTGACAATTGT+GGG - chr1.3:57236413-57236432 MS.gene44001:intron 35.0%
GAATAAACATGGACAACGTA+TGG - chr1.3:57235488-57235507 MS.gene44001:intron 35.0%
GCTTTCATTCATAAAGTCCT+TGG + chr1.3:57236449-57236468 None:intergenic 35.0%
GTTACGTCGTGTAACAAATT+TGG - chr1.3:57236674-57236693 MS.gene44001:intron 35.0%
TCCTTCACAATTGACAATTG+TGG - chr1.3:57236412-57236431 MS.gene44001:intron 35.0%
TGTTAATTCCCCCAAACAAA+AGG - chr1.3:57235768-57235787 MS.gene44001:intron 35.0%
TTTGTGTGCAACACTATTGA+GGG - chr1.3:57234451-57234470 MS.gene44001:CDS 35.0%
! CATAAAGTCCTTGGTAACTT+GGG + chr1.3:57236440-57236459 None:intergenic 35.0%
! TCATAAAGTCCTTGGTAACT+TGG + chr1.3:57236441-57236460 None:intergenic 35.0%
! TTTCTGAAAGATCTAACTGG+TGG + chr1.3:57236211-57236230 None:intergenic 35.0%
!!! GTTTTGTTTGAGACTGAGAT+AGG - chr1.3:57234408-57234427 MS.gene44001:CDS 35.0%
AAGCGTCTTCGCATAATGAA+AGG - chr1.3:57236801-57236820 MS.gene44001:CDS 40.0%
AATTTGTAGGGCACAAGTTG+TGG - chr1.3:57236180-57236199 MS.gene44001:intron 40.0%
AGAAAAACTCACTTAGCACG+AGG + chr1.3:57234252-57234271 None:intergenic 40.0%
ATTTGTAGGGCACAAGTTGT+GGG - chr1.3:57236181-57236200 MS.gene44001:intron 40.0%
CCCACAATTGTCAATTGTGA+AGG + chr1.3:57236416-57236435 None:intergenic 40.0%
GCTTCTGTAGCTGAAAACAA+AGG - chr1.3:57234189-57234208 MS.gene44001:intron 40.0%
TATGGTAATCAATCAGGGCA+TGG - chr1.3:57235506-57235525 MS.gene44001:intron 40.0%
TCAACGACGATAGAGAATCA+TGG - chr1.3:57236045-57236064 MS.gene44001:intron 40.0%
TTGTGTGCAACACTATTGAG+GGG - chr1.3:57234452-57234471 MS.gene44001:CDS 40.0%
TTTGTTAAGGTGAGCATGGA+TGG - chr1.3:57236307-57236326 MS.gene44001:intron 40.0%
! AGCATTTGTTAAGGTGAGCA+TGG - chr1.3:57236303-57236322 MS.gene44001:intron 40.0%
! TGGGAATGGAGCATTTGTTA+AGG - chr1.3:57236294-57236313 MS.gene44001:intron 40.0%
!! TGTTATGAGTCGGGTTGAAT+TGG + chr1.3:57236706-57236725 None:intergenic 40.0%
!!! GATTTTTTCTGCGGATAGCA+TGG - chr1.3:57235669-57235688 MS.gene44001:intron 40.0%
AAAACTCACTTAGCACGAGG+AGG + chr1.3:57234249-57234268 None:intergenic 45.0%
AGGTCCACCTTACGTAGATA+TGG + chr1.3:57236337-57236356 None:intergenic 45.0%
ATGAAAGGTTCCGAGGCAAT+TGG - chr1.3:57236816-57236835 MS.gene44001:CDS 45.0%
GATGGTGATTGGATGCTTGT+TGG - chr1.3:57236523-57236542 MS.gene44001:intron 45.0%
GCATAAATTCGTGCAGTCGA+TGG - chr1.3:57236084-57236103 MS.gene44001:intron 45.0%
TCGCATAATGAAAGGTTCCG+AGG - chr1.3:57236809-57236828 MS.gene44001:CDS 45.0%
TGAAAGGTTCCGAGGCAATT+GGG - chr1.3:57236817-57236836 MS.gene44001:CDS 45.0%
TGCACCATATCTACGTAAGG+TGG - chr1.3:57236330-57236349 MS.gene44001:intron 45.0%
TGGTGCACCATATCTACGTA+AGG - chr1.3:57236327-57236346 MS.gene44001:intron 45.0%
TTTACCTAGCCCAATTGCCT+CGG + chr1.3:57236829-57236848 None:intergenic 45.0%
! ATAAGAGCACAAGTGGTGGT+GGG - chr1.3:57236275-57236294 MS.gene44001:intron 45.0%
! GAAGCAGATAAGAGCACAAG+TGG - chr1.3:57236268-57236287 MS.gene44001:intron 45.0%
! TTGCATTTTTCCACTGCCCT+TGG + chr1.3:57236956-57236975 None:intergenic 45.0%
! TTTTCTGCGGATAGCATGGT+TGG - chr1.3:57235673-57235692 MS.gene44001:intron 45.0%
!! AAGTATTGGATGGTGGCTGA+AGG - chr1.3:57235606-57235625 MS.gene44001:intron 45.0%
!! GCTTGTTGGTGATGTTCCAT+GGG - chr1.3:57236537-57236556 MS.gene44001:intron 45.0%
!! GTTGGTTCGGTTCAGATCAT+CGG + chr1.3:57236636-57236655 None:intergenic 45.0%
!! TGCTTGTTGGTGATGTTCCA+TGG - chr1.3:57236536-57236555 MS.gene44001:intron 45.0%
!! AAATAAAAAAAATAAAGTAT+TGG - chr1.3:57235592-57235611 MS.gene44001:intron 5.0%
AAAAGGGCTACTCACTCCCA+TGG + chr1.3:57236556-57236575 None:intergenic 50.0%
AATCAATCAGGGCATGGTGG+AGG - chr1.3:57235512-57235531 MS.gene44001:intron 50.0%
AATTACAGCACCAAGGGCAG+TGG - chr1.3:57236943-57236962 MS.gene44001:CDS 50.0%
GGTAATCAATCAGGGCATGG+TGG - chr1.3:57235509-57235528 MS.gene44001:intron 50.0%
GTGACACGCACACAAGACAA+GGG + chr1.3:57235825-57235844 None:intergenic 50.0%
TGAATGCGTGCAGTCGTTGA+CGG + chr1.3:57235949-57235968 None:intergenic 50.0%
TGGAAGACCGAGTCGTAACT+CGG + chr1.3:57234037-57234056 None:intergenic 50.0%
TGGTGGCTGAAGGAATAGGT+TGG - chr1.3:57235616-57235635 MS.gene44001:intron 50.0%
TTGTGGGTCCCAAGTTACCA+AGG - chr1.3:57236429-57236448 MS.gene44001:intron 50.0%
! CGGATAGCATGGTTGGTTGT+CGG - chr1.3:57235680-57235699 MS.gene44001:intron 50.0%
! GATAAGAGCACAAGTGGTGG+TGG - chr1.3:57236274-57236293 MS.gene44001:intron 50.0%
! GCAGATAAGAGCACAAGTGG+TGG - chr1.3:57236271-57236290 MS.gene44001:intron 50.0%
! GGATAGCATGGTTGGTTGTC+GGG - chr1.3:57235681-57235700 MS.gene44001:intron 50.0%
! TGGATGGTGGCTGAAGGAAT+AGG - chr1.3:57235612-57235631 MS.gene44001:intron 50.0%
ACTCACTTAGCACGAGGAGG+AGG + chr1.3:57234246-57234265 None:intergenic 55.0%
CTTCCAGGTGCAGGTGATCA+CGG - chr1.3:57234051-57234070 MS.gene44001:intron 55.0%
GAGGAGACCGAGTTACGACT+CGG - chr1.3:57234027-57234046 MS.gene44001:intron 55.0%
GGTGACACGCACACAAGACA+AGG + chr1.3:57235826-57235845 None:intergenic 55.0%
GTAGGGCACAAGTTGTGGGA+TGG - chr1.3:57236185-57236204 MS.gene44001:intron 55.0%
!! AGCACAAGTGGTGGTGGGAA+TGG - chr1.3:57236280-57236299 MS.gene44001:intron 55.0%
!! GAGTTACGACTCGGTCTTCC+AGG - chr1.3:57234036-57234055 MS.gene44001:intron 55.0%
CCAAGAGCTGTCAGATGCGC+TGG - chr1.3:57236375-57236394 MS.gene44001:intron 60.0%
CCAGCGCATCTGACAGCTCT+TGG + chr1.3:57236378-57236397 None:intergenic 60.0%
GGTTCCGAGGCAATTGGGCT+AGG - chr1.3:57236822-57236841 MS.gene44001:CDS 60.0%
TCTCCGTGATCACCTGCACC+TGG + chr1.3:57234057-57234076 None:intergenic 60.0%
! GCACACAAGACAAGGGCGTG+TGG + chr1.3:57235818-57235837 None:intergenic 60.0%
!! CGACTCGGTCTTCCAGGTGC+AGG - chr1.3:57234042-57234061 MS.gene44001:intron 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 57233976 57236988 57233976 ID=MS.gene44001
chr1.3 mRNA 57233976 57236988 57233976 ID=MS.gene44001.t1;Parent=MS.gene44001
chr1.3 exon 57236705 57236988 57236705 ID=MS.gene44001.t1.exon1;Parent=MS.gene44001.t1
chr1.3 CDS 57236705 57236988 57236705 ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1
chr1.3 exon 57234404 57234775 57234404 ID=MS.gene44001.t1.exon2;Parent=MS.gene44001.t1
chr1.3 CDS 57234404 57234775 57234404 ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1
chr1.3 exon 57234121 57234182 57234121 ID=MS.gene44001.t1.exon3;Parent=MS.gene44001.t1
chr1.3 CDS 57234121 57234182 57234121 ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1
chr1.3 exon 57233976 57234013 57233976 ID=MS.gene44001.t1.exon4;Parent=MS.gene44001.t1
chr1.3 CDS 57233976 57234013 57233976 ID=cds.MS.gene44001.t1;Parent=MS.gene44001.t1
Gene Sequence

>MS.gene44001

ATGACTAACGTTGGGGATGCAGAGAGAGACAAGTACAGCTTGATAAATTTTGAGGAGACCGAGTTACGACTCGGTCTTCCAGGTGCAGGTGATCACGGAGAATCACCTGTTAAAAATAGTTGTGGAAAGAGAGGTTTCTCAGAAACTGCTAATGTTGATTTGAAGCTTAATCTTTCTCCTATAAATGATTCTGCTTCATCTTCTTCAACTATAGCTTCTGTAGCTGAAAACAAAGGCAAAGACACAACAACTTCTGCTACTGTTGCTCCTCCTCCTCGTGCTAAGTGAGTTTTTCTTTCTCATGAATATATAGAACTTTTAATTTTGTTTTAAAATAATTCTTAACGAGTTTAATGATAGATGAATTAGTTTTGATCTTTGTTTTGTTGTTTTAATTTGTGTTGATTAAGTGAATAATTAAGTTATATCTAGGTTTTGTTTGAGACTGAGATAGGTTATTAGAAAATTTGTTCAATTTGTGTGCAACACTATTGAGGGGAATCTTATTAGAAAGAGGATGTAATTTTATCACCTTGTTCATAGAGTATAGATAATTAAGGATGAAAATTACTAAAATGAAAAATCATAGATTCATTGAATTGAAAAGATTAGATTTTTTTTTAAGGGCCATTGAATTGAAAAGATTAGATAAATGTTGTAACAAGTTTTAATTATTTATTTTGAATAAGTTTTAATTAGGTTGCTTATAAAAATGTTTTAATTAGGTTAGAAGGTTGTTTGTGATTAAAGATCACACGGTTACAATTAGGTTTCTTGTTCCATAATTTTTGGCAGAATTTGCTCTTACAACTTGATTTAGTTTTTTTGAACATGACAATTTTGGTGGTTTGTTTCGTGTTCTAAACGTATTGTTAGAATTTGTTTGTGAAAAACTATTGGCAATTTGAGTTTGATTGGAATAAAATTGAACATAGAATTCTAAATTTGTTTGTATATCATATTCAGTGTGATTACTTTTGAACATATTTTTGAAACATTAGTTTGTAATGTGTTTTTAGTCTTAATTCTAATATGATATTATTGCAGCACAATTAAATGAGAGTGTAAACATGTTTACATTTAAATTCTATTTTGAACCTGTTTTGTTAAACAATAATATTAAACTTGACTACAATATGCTTATAAGATTTCGTCCATAAAAACTAACATTAAACTTTCTACTGCATGTTTAGTTCAACTTTTGAAAGATGCAAAATTGACTATAGAATTCGAATTGATTTTAAAATGTTCGATTTTTTTTAATAAAGTTAAACTTGCTGTCAAATTTGATTCTAATTAAATTAAAGATAGATTTTTGAATGTTTGTCTAACATTTGAATTTGAACCTCAAATTTTTTGAATAAAATTTAACCTATATTGACATGAATTTTAATCTAAAATCACTTTTCATTCAACTCACTAAATTTATATAAAAAATTCCTTCAAAATCAATTTTATTACAGCAAGTGTCACACTTGATGATAAGATAAACTAACATCACAATTTTTAAAAGAATAAACATGGACAACGTATGGTAATCAATCAGGGCATGGTGGAGGAGAAAAGAAATCCTAAAAATGTCATCCAGATTATGTGCAAGAAAAATTAAAAATAAAAAATAAAAAAAATAAAGTATTGGATGGTGGCTGAAGGAATAGGTTGGCAAGCAATAATAATAGTATTATTTTAGTTGGATTTTTTCTGCGGATAGCATGGTTGGTTGTCGGGTAGACAAAAGAAAAAGACAAGACACTTGGAATCTTTACTTTTTCTATATCCACTCATATAATATTGTTAATTCCCCCAAACAAAAGGATAAATAAAGTTGAAAAGGATAGTCCACACGCCCTTGTCTTGTGTGCGTGTCACCTATCACATTGTTATATAGTCTCACTCCAATAATTCATGCATAATTTACTGTAGTATAAAGGACTAGAGAATTTGTGTTTAATTAGAAATTGGACTCTTTGCCGTCAACGACTGCACGCATTCATGCAATCGATATTGTATGACCATCCGATTAAGATCATTGATGTTCATGCAGTCATCTACTGCGTAAATTCATGCAGTCAACGACGATAGAGAATCATGGTCTTTTGTCATCGATTGCATAAATTCGTGCAGTCGATGGTAGAGAATCTTGATCTGTTTAATAAGATTAGTTGGAAATTATTGATGTAGTACTAATTGATCAATGAATATTGAATTTGTAGGGCACAAGTTGTGGGATGGCCACCAGTTAGATCTTTCAGAAAGAACATAGTAAATGTTCAAAAGAGCAATAATGAATCAGAAGCAGATAAGAGCACAAGTGGTGGTGGGAATGGAGCATTTGTTAAGGTGAGCATGGATGGTGCACCATATCTACGTAAGGTGGACCTTAAATTGTACAAGAGTTACCAAGAGCTGTCAGATGCGCTGGCTAAAATGTTTAGTTCCTTCACAATTGACAATTGTGGGTCCCAAGTTACCAAGGACTTTATGAATGAAAGCAAATTGATTGACCTTTTGAACGGTTCTGATTATGTACCAACATATGAAGACAAAGATGGTGATTGGATGCTTGTTGGTGATGTTCCATGGGAGTGAGTAGCCCTTTTTTTCACCTCACATTTCATTGTTTTAATTTTTTTAATTTAAAAAAATTCATGCATTATCCGATGATCTGAACCGAACCAACTCAAACCAATAAAAATTTGTTACGTCGTGTAACAAATTTGGTCAAAACCAATTCAACCCGACTCATAACATTTTGATCATAGTCATACTCTTATTAATTGGATGCTCATCTACACAATTTTTGCAGAATGTTCGTTCAATCGTGCAAGCGTCTTCGCATAATGAAAGGTTCCGAGGCAATTGGGCTAGGTAAATGATCATATACTTACTTGTATTATACTCAAATGCATTTAACAAATTAGGTTTAAAACATTATGGTACATTTTATCTTATCTTAAATATATTGTTAATTACAGCACCAAGGGCAGTGGAAAAATGCAAGAACAGAAGCTGA

Protein sequence

>MS.gene44001.t1

MTNVGDAERDKYSLINFEETELRLGLPGAGDHGESPVKNSCGKRGFSETANVDLKLNLSPINDSASSSSTIASVAENKGKDTTTSATVAPPPRAKAQVVGWPPVRSFRKNIVNVQKSNNESEADKSTSGGGNGAFVKVSMDGAPYLRKVDLKLYKSYQELSDALAKMFSSFTIDNCGSQVTKDFMNESKLIDLLNGSDYVPTYEDKDGDWMLVGDVPWEMFVQSCKRLRIMKGSEAIGLAPRAVEKCKNRS