AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene005062


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005062.t1 MTR_1g079790 98.555 761 11 0 4 764 2 762 0.0 1545
MS.gene005062.t1 MTR_1g079790 97.466 592 15 0 4 595 2 593 0.0 1189
MS.gene005062.t1 MTR_7g116330 71.660 741 203 6 26 764 30 765 0.0 1090
MS.gene005062.t1 MTR_1g073840 55.817 765 320 8 4 760 3 757 0.0 860
MS.gene005062.t1 MTR_1g044210 51.783 757 348 9 10 757 9 757 0.0 767
MS.gene005062.t1 MTR_4g031150 37.885 747 434 17 28 759 52 783 3.32e-159 481
MS.gene005062.t1 MTR_7g109150 37.402 639 361 15 28 645 3 623 1.35e-110 350
MS.gene005062.t1 MTR_4g134880 56.164 73 31 1 689 760 1 73 1.81e-19 83.6
MS.gene005062.t1 MTR_8g080770 33.083 133 79 3 636 760 731 861 4.46e-15 80.1
MS.gene005062.t1 MTR_8g080770 25.595 168 125 0 352 519 262 429 1.69e-12 71.6
MS.gene005062.t1 MTR_8g080770 33.083 133 79 3 636 760 840 970 4.77e-15 80.1
MS.gene005062.t1 MTR_8g080770 25.595 168 125 0 352 519 371 538 1.58e-12 71.6
MS.gene005062.t1 MTR_3g085130 34.921 126 71 3 636 753 695 817 1.38e-13 75.1
MS.gene005062.t1 MTR_3g085130 23.810 168 128 0 352 519 216 383 1.31e-12 72.0
MS.gene005062.t1 MTR_3g085130 34.921 126 71 3 636 753 905 1027 2.05e-13 74.7
MS.gene005062.t1 MTR_3g085130 23.810 168 128 0 352 519 426 593 1.15e-12 72.4
MS.gene005062.t1 MTR_8g075340 23.544 395 246 15 362 717 460 837 2.92e-13 74.3
MS.gene005062.t1 MTR_8g075340 33.077 130 62 3 636 744 1028 1153 8.44e-12 69.7
MS.gene005062.t1 MTR_8g106150 25.000 208 153 1 352 556 362 569 5.74e-13 73.2
MS.gene005062.t1 MTR_8g106150 25.000 208 153 1 352 556 119 326 7.77e-13 72.8
MS.gene005062.t1 MTR_3g105590 26.531 196 128 5 329 519 331 515 3.29e-11 67.4
MS.gene005062.t1 MTR_5g022470 24.274 379 229 13 362 700 498 858 5.65e-11 67.0
MS.gene005062.t1 MTR_5g022470 24.274 379 229 13 362 700 498 858 6.09e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene005062.t1 AT3G04580 59.813 749 286 8 25 762 22 766 0.0 872
MS.gene005062.t1 AT3G04580 59.813 749 286 8 25 762 22 766 0.0 872
MS.gene005062.t1 AT3G23150 51.018 786 345 14 4 764 3 773 0.0 726
MS.gene005062.t1 AT3G23150 52.333 600 260 10 4 589 3 590 0.0 573
MS.gene005062.t1 AT1G04310 46.772 635 305 10 4 619 3 623 4.28e-178 525
MS.gene005062.t1 AT1G04310 46.772 635 305 10 4 619 3 623 4.28e-178 525
MS.gene005062.t1 AT1G66340 40.162 742 414 15 30 757 4 729 4.56e-168 503
MS.gene005062.t1 AT2G40940 37.479 603 349 14 31 618 3 592 6.36e-110 348
MS.gene005062.t1 AT5G35750 23.823 361 224 9 353 668 567 921 4.25e-17 86.7
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 440 615 1.95e-15 81.3
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 428 603 1.98e-15 81.3
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 428 603 1.98e-15 81.3
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 428 603 1.98e-15 81.3
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 428 603 1.98e-15 81.3
MS.gene005062.t1 AT2G01830 25.568 176 131 0 352 527 451 626 2.35e-15 81.3
MS.gene005062.t1 AT1G27320 25.134 187 140 0 333 519 410 596 4.34e-14 77.0
MS.gene005062.t1 AT5G10720 23.364 321 207 11 329 633 327 624 4.80e-12 70.1
MS.gene005062.t1 AT2G17820 23.120 359 225 9 363 684 488 832 1.66e-11 68.6

Find 178 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGTAATTATGCATATTAT+TGG 0.179884 1.4:+64568428 MS.gene005062:CDS
CCCTCTCCTTCTTAGAATTA+AGG 0.206742 1.4:+64567362 MS.gene005062:CDS
GGATATCTCTGAAAATAAAA+AGG 0.209690 1.4:+64568244 MS.gene005062:CDS
TGTGAATTTGAATAATCTTT+AGG 0.255453 1.4:-64570079 None:intergenic
TTCATCAGGGTTTGAGTGCC+TGG 0.258763 1.4:+64570201 MS.gene005062:CDS
GATGAAGGAGGATTGGTTTC+CGG 0.271626 1.4:-64570423 None:intergenic
GCTATGATCAAAGGCCAATT+AGG 0.272954 1.4:-64570334 None:intergenic
TGTTGAGCTTTCTAAGGCTT+TGG 0.281832 1.4:+64567536 MS.gene005062:CDS
TACTCTTGTTGAGCTTTCTA+AGG 0.286989 1.4:+64567530 MS.gene005062:CDS
TGCACCAAACCCTGAGAGTT+TGG 0.309721 1.4:-64569995 None:intergenic
TTTATGTCTACATACTCAAC+TGG 0.311908 1.4:-64568560 None:intergenic
GGAAATTCAATGGCCCTAAT+TGG 0.315301 1.4:+64570320 MS.gene005062:CDS
GGATGCTTACTAGGGAAATT+AGG 0.316546 1.4:+64567475 MS.gene005062:CDS
ATGTTATGCTATACTAGTTT+TGG 0.328451 1.4:+64567857 MS.gene005062:CDS
GATTATTCAAATTCACAGTT+TGG 0.328563 1.4:+64570085 MS.gene005062:CDS
AGGAAGCTAGTTGGCATGTT+AGG 0.342538 1.4:+64567454 MS.gene005062:CDS
AGGACTGAACAAAAGATTAT+TGG 0.343143 1.4:+64568167 MS.gene005062:CDS
CAGATGATGATAGTTTAAAT+AGG 0.352906 1.4:+64570128 MS.gene005062:CDS
ACTTCAAAACCATCCATTTC+AGG 0.357064 1.4:-64570283 None:intergenic
ATCTGTTGTTTCGTTGAAAT+CGG 0.358826 1.4:-64568623 None:intergenic
ATTTGCATAATTGTGCTGTT+TGG 0.362682 1.4:+64567559 MS.gene005062:CDS
TTCCTTATCTCCAACACATC+AGG 0.366420 1.4:-64567678 None:intergenic
TTCTTCCAGGTTCGGACTCT+AGG 0.375382 1.4:+64567880 MS.gene005062:CDS
CTAGTAACAGCAGTTTCATC+AGG 0.380902 1.4:+64570187 MS.gene005062:CDS
CAGGTTCGGACTCTAGGGTT+TGG 0.381488 1.4:+64567886 MS.gene005062:CDS
GGCATGTTAGGATGCTTACT+AGG 0.396870 1.4:+64567466 MS.gene005062:CDS
TGGAATTGGGGCAAGAAGTT+GGG 0.397658 1.4:+64567415 MS.gene005062:CDS
TCATGAATTGAAATCGGATT+CGG 0.398997 1.4:+64567617 MS.gene005062:CDS
TTTGACTCATGAATTGAAAT+CGG 0.399140 1.4:+64567611 MS.gene005062:CDS
GAATCACAACAGTGAATCTA+AGG 0.402957 1.4:+64568658 MS.gene005062:CDS
ATGGAATTGGGGCAAGAAGT+TGG 0.404627 1.4:+64567414 MS.gene005062:CDS
GTCCATGGCTCATCACTGTT+TGG 0.409431 1.4:-64568085 None:intergenic
CCCTCAACATGGAATGTAGA+AGG 0.409888 1.4:-64568295 None:intergenic
CATGAATTGAAATCGGATTC+GGG 0.409935 1.4:+64567618 MS.gene005062:CDS
AGATAATGCAAGGTAATATA+TGG 0.410537 1.4:+64569966 MS.gene005062:intron
AGGCAGAATGTGATGGAATT+GGG 0.410985 1.4:+64567402 MS.gene005062:CDS
AGTTGAGGTGGTGGCTGATC+AGG 0.412583 1.4:+64567929 MS.gene005062:CDS
GAGGCAGAATGTGATGGAAT+TGG 0.412904 1.4:+64567401 MS.gene005062:CDS
ACAAAGTAAAGAAGCTCAAT+TGG 0.414136 1.4:-64567141 None:intergenic
TTGAAGTGGCGGCAAGGATC+AGG 0.415267 1.4:+64570299 MS.gene005062:CDS
ATTACCAAACTCTCAGGGTT+TGG 0.429450 1.4:+64569991 MS.gene005062:CDS
ATGGATATTACCAAACTCTC+AGG 0.429769 1.4:+64569985 MS.gene005062:CDS
AGCATACACACAATCCTTGT+TGG 0.430934 1.4:+64567072 MS.gene005062:CDS
CCTTCTACATTCCATGTTGA+GGG 0.431332 1.4:+64568295 MS.gene005062:CDS
ATCTCTCTCCTATCATCATT+CGG 0.433427 1.4:-64567585 None:intergenic
ACCTCAACTATCTCCATCTC+TGG 0.436575 1.4:-64567915 None:intergenic
TTGTGTGTGTATCAAGGGTT+TGG 0.438334 1.4:+64568341 MS.gene005062:CDS
GCAACTCCTAGTTTAGATTC+AGG 0.441706 1.4:-64567726 None:intergenic
TTTGAGACTGTTGCAATGCT+CGG 0.446015 1.4:-64568025 None:intergenic
CAAACCCTAGAGTCCGAACC+TGG 0.447027 1.4:-64567885 None:intergenic
GAAAGCAAGAGTTGAAAAGA+AGG 0.447107 1.4:-64567270 None:intergenic
TAAGGAAAACTAAAGGGGTT+AGG 0.448583 1.4:+64567694 MS.gene005062:CDS
CTATGATCAAAGGCCAATTA+GGG 0.451338 1.4:-64570333 None:intergenic
CTGGGTGCTATAAGTGGCTC+TGG 0.456114 1.4:+64570220 MS.gene005062:CDS
CTTCTTCTAAAGTTTCAGAT+AGG 0.459490 1.4:+64570028 MS.gene005062:CDS
TACAAGTGAGGGTGGTGATA+AGG 0.459678 1.4:+64568502 MS.gene005062:CDS
GAACGCGATGATGGCCAGCC+AGG 0.462578 1.4:+64568049 MS.gene005062:CDS
TGGAGATAAGGAAAACTAAA+GGG 0.470604 1.4:+64567688 MS.gene005062:CDS
TAATGCAGAAGAGCAAGTTA+AGG 0.472874 1.4:+64570366 MS.gene005062:CDS
AGACATTCACATGCCTGAAA+TGG 0.474093 1.4:+64570270 MS.gene005062:CDS
TCCTTCTACATTCCATGTTG+AGG 0.474448 1.4:+64568294 MS.gene005062:CDS
GTTGCGAGTAGTGGCGGTGG+GGG 0.474504 1.4:+64567744 MS.gene005062:CDS
GGAGTTGCGAGTAGTGGCGG+TGG 0.474808 1.4:+64567741 MS.gene005062:CDS
CAAAGGAGGGACGCCGGAGT+TGG 0.475152 1.4:+64567827 MS.gene005062:CDS
CTTCATGTTTCGAATTTCAA+AGG 0.475335 1.4:+64567810 MS.gene005062:CDS
AAAGAAGCTACTCGAGAGGC+TGG 0.477400 1.4:+64570159 MS.gene005062:CDS
GAGTTGCGAGTAGTGGCGGT+GGG 0.478888 1.4:+64567742 MS.gene005062:CDS
CGAGAACCGACGCGTGAGAA+AGG 0.484376 1.4:-64567962 None:intergenic
ACCCTGATGTGTTGGAGATA+AGG 0.484829 1.4:+64567676 MS.gene005062:CDS
GAATGACTTCCTAGCCTGGC+TGG 0.485805 1.4:-64568063 None:intergenic
TCATCAGGGTTTGAGTGCCT+GGG 0.491049 1.4:+64570202 MS.gene005062:CDS
TCTTCCAGGTTCGGACTCTA+GGG 0.492992 1.4:+64567881 MS.gene005062:CDS
AAGTGCTTGTGTGTGTATCA+AGG 0.498129 1.4:+64568335 MS.gene005062:CDS
TGGGATTATGAAGAAACAAA+AGG 0.498382 1.4:+64567434 MS.gene005062:CDS
TTTGGAATGACTTCCTAGCC+TGG 0.501343 1.4:-64568067 None:intergenic
TTTGGATGCCGAATGATGAT+AGG 0.501945 1.4:+64567577 MS.gene005062:CDS
TTGGAGATAAGGAAAACTAA+AGG 0.504670 1.4:+64567687 MS.gene005062:CDS
TTGAGGCCTGAATCTAAACT+AGG 0.504811 1.4:+64567720 MS.gene005062:CDS
TGAGGAATTTAGCAACAGTA+AGG 0.504921 1.4:-64567293 None:intergenic
AGGCCAATGCATTCAGTTGT+GGG 0.505607 1.4:+64568113 MS.gene005062:CDS
CCCTCACCTTAATTCTAAGA+AGG 0.509242 1.4:-64567368 None:intergenic
CGATGATGGCCAGCCAGGCT+AGG 0.509807 1.4:+64568054 MS.gene005062:CDS
TGAAGAAACAACAATTTGAA+AGG 0.513054 1.4:-64567180 None:intergenic
GAGTTTAGTAAACGATGTAA+TGG 0.515957 1.4:+64568223 MS.gene005062:CDS
AACTCTCAGGGTTTGGTGCA+AGG 0.516591 1.4:+64569998 MS.gene005062:CDS
GAGTGCCTGGGTGCTATAAG+TGG 0.519942 1.4:+64570214 MS.gene005062:CDS
GCATTGGCCTCCTCAGTCCA+TGG 0.520880 1.4:-64568100 None:intergenic
AAGGATAGATGCATGCTGGC+TGG 0.523016 1.4:+64570385 MS.gene005062:CDS
GTCTCAAAAGAACGCGATGA+TGG 0.526187 1.4:+64568040 MS.gene005062:CDS
TTTCTTGAGGCAGAATGTGA+TGG 0.526914 1.4:+64567395 MS.gene005062:CDS
GAGAACCGACGCGTGAGAAA+GGG 0.532015 1.4:-64567961 None:intergenic
TGTTGAACACGCGTGACCGA+GGG 0.532022 1.4:+64568456 MS.gene005062:CDS
GCTATCTGATGAAGGAGGAT+TGG 0.533500 1.4:-64570430 None:intergenic
TGTGATTGACCCTGATGTGT+TGG 0.534459 1.4:+64567668 MS.gene005062:CDS
TATGTGCCGGAGGTTGGTAC+AGG 0.536453 1.4:+64568697 MS.gene005062:CDS
GCAAGGATCAGGAAATTCAA+TGG 0.537123 1.4:+64570310 MS.gene005062:CDS
CTTCAATATGTGCCGGAGGT+TGG 0.538586 1.4:+64568691 MS.gene005062:CDS
GCTATAAGAGCTATGATCAA+AGG 0.539373 1.4:-64570343 None:intergenic
CAACGAAACAACAGATTGGT+AGG 0.539988 1.4:+64568630 MS.gene005062:CDS
CATACCACATAGAACTATGA+AGG 0.542546 1.4:-64567211 None:intergenic
GAGGCCAATGCATTCAGTTG+TGG 0.544582 1.4:+64568112 MS.gene005062:CDS
TTGTTGAACACGCGTGACCG+AGG 0.544947 1.4:+64568455 MS.gene005062:CDS
GGTTTGGACCGCTCCAGAGA+TGG 0.547219 1.4:+64567902 MS.gene005062:CDS
ATTTCAACGAAACAACAGAT+TGG 0.547312 1.4:+64568626 MS.gene005062:CDS
TGTTTCAAGAGGGTAATATG+AGG 0.554581 1.4:+64568147 MS.gene005062:CDS
AACATGTATCTTTCAAGCGA+TGG 0.555713 1.4:-64570052 None:intergenic
TGCATGCTGGCTGGAATGAA+TGG 0.556631 1.4:+64570394 MS.gene005062:CDS
GTTCATCCGCTATCTGATGA+AGG 0.557017 1.4:-64570438 None:intergenic
AGTGCTTGTGTGTGTATCAA+GGG 0.557402 1.4:+64568336 MS.gene005062:CDS
CTGGAATGAATGGTGTGATC+CGG 0.559043 1.4:+64570404 MS.gene005062:CDS
AGTTGCGAGTAGTGGCGGTG+GGG 0.561735 1.4:+64567743 MS.gene005062:CDS
ATGTTTCGAATTTCAAAGGA+GGG 0.563184 1.4:+64567814 MS.gene005062:CDS
GAATTTCAAAGGAGGGACGC+CGG 0.563898 1.4:+64567821 MS.gene005062:CDS
CACCTACCTGTACCAACCTC+CGG 0.564583 1.4:-64568703 None:intergenic
AACACATCAGGGTCAATCAC+AGG 0.564986 1.4:-64567666 None:intergenic
AACATGGAATGTAGAAGGAA+AGG 0.568366 1.4:-64568290 None:intergenic
CGTAGCCCTTTCTCACGCGT+CGG 0.568817 1.4:+64567956 MS.gene005062:CDS
AAATTCGAAACATGAAGCAT+CGG 0.568829 1.4:-64567804 None:intergenic
TATTCAAATTCACAGTTTGG+AGG 0.570060 1.4:+64570088 MS.gene005062:CDS
ATCCCCACAACTGAATGCAT+TGG 0.570182 1.4:-64568116 None:intergenic
CATGTTTCGAATTTCAAAGG+AGG 0.571827 1.4:+64567813 MS.gene005062:CDS
GCATGTTAGGATGCTTACTA+GGG 0.572208 1.4:+64567467 MS.gene005062:CDS
AGATCGGTCCTACTTCGTGC+AGG 0.573170 1.4:+64570463 MS.gene005062:CDS
TGCTCTTGTGTCGTGTGCAA+CGG 0.573831 1.4:+64567317 MS.gene005062:CDS
AGAAACAAAAGGAAGCTAGT+TGG 0.575842 1.4:+64567445 MS.gene005062:CDS
ACCTTAATTCTAAGAAGGAG+AGG 0.576433 1.4:-64567363 None:intergenic
ATTCACATGCCTGAAATGGA+TGG 0.579300 1.4:+64570274 MS.gene005062:CDS
TTCCAAACAGTGATGAGCCA+TGG 0.580133 1.4:+64568083 MS.gene005062:CDS
CCTTAATTCTAAGAAGGAGA+GGG 0.581303 1.4:-64567362 None:intergenic
TCCTTCTTAGAATTAAGGTG+AGG 0.582740 1.4:+64567367 MS.gene005062:CDS
CCTTCTTAGAATTAAGGTGA+GGG 0.583317 1.4:+64567368 MS.gene005062:CDS
GCTTGAGCTTCAATATGTGC+CGG 0.584592 1.4:+64568684 MS.gene005062:CDS
TCCTTATCTCCAACACATCA+GGG 0.586059 1.4:-64567677 None:intergenic
AACTATCTCCATCTCTGGAG+CGG 0.592322 1.4:-64567910 None:intergenic
TGAGGAGTTGGGTGCTGTCG+CGG 0.592472 1.4:+64567770 MS.gene005062:CDS
AGTTAAGGATAGATGCATGC+TGG 0.598062 1.4:+64570381 MS.gene005062:CDS
AAGGTTTCATCTCTAACTGA+AGG 0.599231 1.4:-64568271 None:intergenic
TGGATATTACCAAACTCTCA+GGG 0.599355 1.4:+64569986 MS.gene005062:CDS
GGAGATAAGGAAAACTAAAG+GGG 0.605752 1.4:+64567689 MS.gene005062:CDS
ATGCTTTCATTGTTTCAAGA+GGG 0.605913 1.4:+64568137 MS.gene005062:CDS
AAACTAGGAGTTGCGAGTAG+TGG 0.606504 1.4:+64567735 MS.gene005062:CDS
CTAGGAGTTGCGAGTAGTGG+CGG 0.609987 1.4:+64567738 MS.gene005062:CDS
AAGAAGCTACTCGAGAGGCT+GGG 0.610653 1.4:+64570160 MS.gene005062:CDS
GGTGCTATAAGTGGCTCTGG+TGG 0.610827 1.4:+64570223 MS.gene005062:CDS
TAGTAACAGCAGTTTCATCA+GGG 0.611000 1.4:+64570188 MS.gene005062:CDS
ATAGCCTTCATAGTTCTATG+TGG 0.611293 1.4:+64567207 MS.gene005062:CDS
AATCTTATGCAGATAATGCA+AGG 0.616623 1.4:+64569956 MS.gene005062:intron
GAGGAATTTAGCAACAGTAA+GGG 0.621503 1.4:-64567292 None:intergenic
GATGCTTTCATTGTTTCAAG+AGG 0.621734 1.4:+64568136 MS.gene005062:CDS
GATGGAGATAGTTGAGGTGG+TGG 0.622877 1.4:+64567920 MS.gene005062:CDS
TCACAACAGTGAATCTAAGG+AGG 0.625084 1.4:+64568661 MS.gene005062:CDS
GATAGCGGATGAACTTAGAT+CGG 0.629033 1.4:+64570447 MS.gene005062:CDS
GCAAGCGGCTTCCCTCAACA+TGG 0.629945 1.4:-64568306 None:intergenic
CAAGCACTTAGCAATGCAAG+CGG 0.631343 1.4:-64568321 None:intergenic
GGTGACACAATGTTGAAAGT+CGG 0.632956 1.4:+64568188 MS.gene005062:CDS
CTAAGAAGGAGAGGGATCAA+CGG 0.639905 1.4:-64567354 None:intergenic
TAACATGTATCAACCAACTC+CGG 0.640709 1.4:-64567840 None:intergenic
CACAACAGTGAATCTAAGGA+GGG 0.640846 1.4:+64568662 MS.gene005062:CDS
TCCAGAGATGGAGATAGTTG+AGG 0.641469 1.4:+64567914 MS.gene005062:CDS
GGCCAATGCATTCAGTTGTG+GGG 0.642247 1.4:+64568114 MS.gene005062:CDS
TGAGCTTCAATATGTGCCGG+AGG 0.643404 1.4:+64568687 MS.gene005062:CDS
AGAGATGGAGATAGTTGAGG+TGG 0.648766 1.4:+64567917 MS.gene005062:CDS
GGCAGAATGTGATGGAATTG+GGG 0.651385 1.4:+64567403 MS.gene005062:CDS
TTATGTCTACATACTCAACT+GGG 0.652246 1.4:-64568559 None:intergenic
CAGTGATGAGCCATGGACTG+AGG 0.655532 1.4:+64568090 MS.gene005062:CDS
TGAGGTGGTGGCTGATCAGG+TGG 0.658305 1.4:+64567932 MS.gene005062:CDS
CGAAACAACAGATTGGTAGG+AGG 0.659295 1.4:+64568633 MS.gene005062:CDS
CATCTGCTAGCAAAATCTTG+AGG 0.670396 1.4:-64570111 None:intergenic
CCACTGTAACTGTGATGATG+AGG 0.670665 1.4:+64567038 MS.gene005062:CDS
TGATGAGCCATGGACTGAGG+AGG 0.672113 1.4:+64568093 MS.gene005062:CDS
CCTCATCATCACAGTTACAG+TGG 0.677470 1.4:-64567038 None:intergenic
CAGAGCCACTTATAGCACCC+AGG 0.678501 1.4:-64570219 None:intergenic
CATCCGCTATCTGATGAAGG+AGG 0.680590 1.4:-64570435 None:intergenic
CGACGCGTGAGAAAGGGCTA+CGG 0.681594 1.4:-64567955 None:intergenic
AATCCTCCTTCATCAGATAG+CGG 0.688493 1.4:+64570432 MS.gene005062:CDS
TGACAAAGAAGCTACTCGAG+AGG 0.707649 1.4:+64570155 MS.gene005062:CDS
AGAAGGAGAGGGATCAACGG+CGG 0.710786 1.4:-64567351 None:intergenic
CACACGACACAAGAGCAGTG+AGG 0.767368 1.4:-64567311 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAATAATTACACA+GGG - chr1.4:64569891-64569910 None:intergenic 10.0%
!! TGTAATTATTTAATTAATCA+TGG + chr1.4:64569893-64569912 MS.gene005062:intron 10.0%
!! ATTATAAGTATAAAGAAGTA+AGG - chr1.4:64569756-64569775 None:intergenic 15.0%
!! GATTAATTAAATAATTACAC+AGG - chr1.4:64569892-64569911 None:intergenic 15.0%
!! TAGTGCTTTAATAAAATAAT+TGG - chr1.4:64569784-64569803 None:intergenic 15.0%
!! CAAGTAATTATGCATATTAT+TGG + chr1.4:64568428-64568447 MS.gene005062:CDS 20.0%
!! TGTGAATTTGAATAATCTTT+AGG - chr1.4:64570082-64570101 None:intergenic 20.0%
!! TTTCTTATGTTGAAAGATTT+AGG - chr1.4:64569275-64569294 None:intergenic 20.0%
!!! AAATTTGATTTTCAGATTAC+TGG + chr1.4:64568581-64568600 MS.gene005062:CDS 20.0%
!!! AATTTTACATCCTTAATGAA+TGG - chr1.4:64568943-64568962 None:intergenic 20.0%
!!! CTTTTATCTTAATAGTATCA+CGG + chr1.4:64569331-64569350 MS.gene005062:intron 20.0%
!!! GATATCTCTGAAAATAAAAA+GGG + chr1.4:64568245-64568264 MS.gene005062:CDS 20.0%
!!! TAATTTTGTTTTCCTCTTTT+AGG + chr1.4:64569421-64569440 MS.gene005062:intron 20.0%
! AATGCTTAAAGAATGATGTT+TGG + chr1.4:64568818-64568837 MS.gene005062:intron 25.0%
! AGATAATGCAAGGTAATATA+TGG + chr1.4:64569966-64569985 MS.gene005062:intron 25.0%
! ATGACAAAAAAATTGGTGTA+TGG + chr1.4:64568525-64568544 MS.gene005062:CDS 25.0%
! CACTGTCTATATTATATATG+TGG + chr1.4:64568729-64568748 MS.gene005062:intron 25.0%
! CAGATGATGATAGTTTAAAT+AGG + chr1.4:64570128-64570147 MS.gene005062:CDS 25.0%
! CGTGATACTATTAAGATAAA+AGG - chr1.4:64569333-64569352 None:intergenic 25.0%
! GATAAGGATGACAAAAAAAT+TGG + chr1.4:64568518-64568537 MS.gene005062:CDS 25.0%
! GATTATTCAAATTCACAGTT+TGG + chr1.4:64570085-64570104 MS.gene005062:CDS 25.0%
! TGAAGAAACAACAATTTGAA+AGG - chr1.4:64567183-64567202 None:intergenic 25.0%
! TTTCTTCAAACCATTCATTA+AGG + chr1.4:64568930-64568949 MS.gene005062:intron 25.0%
! TTTGACTCATGAATTGAAAT+CGG + chr1.4:64567611-64567630 MS.gene005062:CDS 25.0%
!! AAAGATTTAGGTTATAACAG+AGG - chr1.4:64569263-64569282 None:intergenic 25.0%
!! GGATATCTCTGAAAATAAAA+AGG + chr1.4:64568244-64568263 MS.gene005062:CDS 25.0%
!! TTCTGACTTTATTTACATTG+TGG + chr1.4:64569933-64569952 MS.gene005062:intron 25.0%
!!! ATGTTATGCTATACTAGTTT+TGG + chr1.4:64567857-64567876 MS.gene005062:CDS 25.0%
!!! TTTTGTAGTCTTGTTCATAT+TGG - chr1.4:64569588-64569607 None:intergenic 25.0%
AAATTCGAAACATGAAGCAT+CGG - chr1.4:64567807-64567826 None:intergenic 30.0%
AATCTTATGCAGATAATGCA+AGG + chr1.4:64569956-64569975 MS.gene005062:intron 30.0%
ACAAAGTAAAGAAGCTCAAT+TGG - chr1.4:64567144-64567163 None:intergenic 30.0%
ACCTATTTCCATTGATGAAA+AGG - chr1.4:64569621-64569640 None:intergenic 30.0%
AGACATAACATAGACAATCA+AGG - chr1.4:64568765-64568784 None:intergenic 30.0%
AGGACTGAACAAAAGATTAT+TGG + chr1.4:64568167-64568186 MS.gene005062:CDS 30.0%
ATGCTTTCATTGTTTCAAGA+GGG + chr1.4:64568137-64568156 MS.gene005062:CDS 30.0%
ATGTTTCGAATTTCAAAGGA+GGG + chr1.4:64567814-64567833 MS.gene005062:CDS 30.0%
ATTTCAACGAAACAACAGAT+TGG + chr1.4:64568626-64568645 MS.gene005062:CDS 30.0%
CTTCATGTTTCGAATTTCAA+AGG + chr1.4:64567810-64567829 MS.gene005062:CDS 30.0%
GAGTTTAGTAAACGATGTAA+TGG + chr1.4:64568223-64568242 MS.gene005062:CDS 30.0%
TATTCAAATTCACAGTTTGG+AGG + chr1.4:64570088-64570107 MS.gene005062:CDS 30.0%
TCATGAATTGAAATCGGATT+CGG + chr1.4:64567617-64567636 MS.gene005062:CDS 30.0%
TGGAGATAAGGAAAACTAAA+GGG + chr1.4:64567688-64567707 MS.gene005062:CDS 30.0%
TGGGATTATGAAGAAACAAA+AGG + chr1.4:64567434-64567453 MS.gene005062:CDS 30.0%
TTATGTCTACATACTCAACT+GGG - chr1.4:64568562-64568581 None:intergenic 30.0%
TTGGAGATAAGGAAAACTAA+AGG + chr1.4:64567687-64567706 MS.gene005062:CDS 30.0%
TTGTGTGATGTAAACTCAAA+AGG - chr1.4:64569388-64569407 None:intergenic 30.0%
TTTATGTCTACATACTCAAC+TGG - chr1.4:64568563-64568582 None:intergenic 30.0%
! AAGAAACTGATTCTACGAAT+CGG + chr1.4:64569101-64569120 MS.gene005062:intron 30.0%
! ATAAGAAAGCTTGTGCTTTT+TGG + chr1.4:64569646-64569665 MS.gene005062:intron 30.0%
! ATCTCTGAAAATAAAAAGGG+TGG + chr1.4:64568248-64568267 MS.gene005062:CDS 30.0%
! ATCTTTTGTGCCTTAAAATC+TGG + chr1.4:64569720-64569739 MS.gene005062:intron 30.0%
! ATTTGCATAATTGTGCTGTT+TGG + chr1.4:64567559-64567578 MS.gene005062:CDS 30.0%
! GAATAACAAGTTCTGATTTG+TGG - chr1.4:64569829-64569848 None:intergenic 30.0%
! GTGTCTTTTCTTGAATTGTA+AGG + chr1.4:64569540-64569559 MS.gene005062:intron 30.0%
! TCCTACTTTACCAGATTTTA+AGG - chr1.4:64569733-64569752 None:intergenic 30.0%
! TCCTTTTCATCAATGGAAAT+AGG + chr1.4:64569617-64569636 MS.gene005062:intron 30.0%
! TCTTTGCCTGAAAAAGTTTT+AGG + chr1.4:64568386-64568405 MS.gene005062:CDS 30.0%
!! ATCTGTTGTTTCGTTGAAAT+CGG - chr1.4:64568626-64568645 None:intergenic 30.0%
!! CTTCTTCTAAAGTTTCAGAT+AGG + chr1.4:64570028-64570047 MS.gene005062:CDS 30.0%
!! TAAGAAAGCTTGTGCTTTTT+GGG + chr1.4:64569647-64569666 MS.gene005062:intron 30.0%
AAAAAAGAGTCTCGACACAA+CGG - chr1.4:64569163-64569182 None:intergenic 35.0%
AACATGGAATGTAGAAGGAA+AGG - chr1.4:64568293-64568312 None:intergenic 35.0%
AACATGTATCTTTCAAGCGA+TGG - chr1.4:64570055-64570074 None:intergenic 35.0%
AAGGTTTCATCTCTAACTGA+AGG - chr1.4:64568274-64568293 None:intergenic 35.0%
AATCAGTTTCTTGCAATTGC+AGG - chr1.4:64569093-64569112 None:intergenic 35.0%
ACTTCAAAACCATCCATTTC+AGG - chr1.4:64570286-64570305 None:intergenic 35.0%
AGAAACAAAAGGAAGCTAGT+TGG + chr1.4:64567445-64567464 MS.gene005062:CDS 35.0%
ATCAGTTTCTTGCAATTGCA+GGG - chr1.4:64569092-64569111 None:intergenic 35.0%
ATCTCTCTCCTATCATCATT+CGG - chr1.4:64567588-64567607 None:intergenic 35.0%
ATGGATATTACCAAACTCTC+AGG + chr1.4:64569985-64570004 MS.gene005062:CDS 35.0%
CATACCACATAGAACTATGA+AGG - chr1.4:64567214-64567233 None:intergenic 35.0%
CATGAATTGAAATCGGATTC+GGG + chr1.4:64567618-64567637 MS.gene005062:CDS 35.0%
CATGTTTCGAATTTCAAAGG+AGG + chr1.4:64567813-64567832 MS.gene005062:CDS 35.0%
CCTTCTTAGAATTAAGGTGA+GGG + chr1.4:64567368-64567387 MS.gene005062:CDS 35.0%
CTATGATCAAAGGCCAATTA+GGG - chr1.4:64570336-64570355 None:intergenic 35.0%
GAAAGCAAGAGTTGAAAAGA+AGG - chr1.4:64567273-64567292 None:intergenic 35.0%
GAATCACAACAGTGAATCTA+AGG + chr1.4:64568658-64568677 MS.gene005062:CDS 35.0%
GAGGAATTTAGCAACAGTAA+GGG - chr1.4:64567295-64567314 None:intergenic 35.0%
GATGCTTTCATTGTTTCAAG+AGG + chr1.4:64568136-64568155 MS.gene005062:CDS 35.0%
GCAATAACTGATCTCATATG+AGG + chr1.4:64569019-64569038 MS.gene005062:intron 35.0%
GCCTTAAAATCTGGTAAAGT+AGG + chr1.4:64569729-64569748 MS.gene005062:intron 35.0%
GCTATAAGAGCTATGATCAA+AGG - chr1.4:64570346-64570365 None:intergenic 35.0%
GCTCTTAGCTGAAATTAGTA+TGG - chr1.4:64569230-64569249 None:intergenic 35.0%
GGAGATAAGGAAAACTAAAG+GGG + chr1.4:64567689-64567708 MS.gene005062:CDS 35.0%
TAACATGTATCAACCAACTC+CGG - chr1.4:64567843-64567862 None:intergenic 35.0%
TAAGGAAAACTAAAGGGGTT+AGG + chr1.4:64567694-64567713 MS.gene005062:CDS 35.0%
TAATGCAGAAGAGCAAGTTA+AGG + chr1.4:64570366-64570385 MS.gene005062:CDS 35.0%
TACTCTTGTTGAGCTTTCTA+AGG + chr1.4:64567530-64567549 MS.gene005062:CDS 35.0%
TAGTAACAGCAGTTTCATCA+GGG + chr1.4:64570188-64570207 MS.gene005062:CDS 35.0%
TCCTTCTTAGAATTAAGGTG+AGG + chr1.4:64567367-64567386 MS.gene005062:CDS 35.0%
TGAGGAATTTAGCAACAGTA+AGG - chr1.4:64567296-64567315 None:intergenic 35.0%
TGGATATTACCAAACTCTCA+GGG + chr1.4:64569986-64570005 MS.gene005062:CDS 35.0%
TGTTTCAAGAGGGTAATATG+AGG + chr1.4:64568147-64568166 MS.gene005062:CDS 35.0%
! ACCTTAATTCTAAGAAGGAG+AGG - chr1.4:64567366-64567385 None:intergenic 35.0%
! ATAGCCTTCATAGTTCTATG+TGG + chr1.4:64567207-64567226 MS.gene005062:CDS 35.0%
! CCTTAATTCTAAGAAGGAGA+GGG - chr1.4:64567365-64567384 None:intergenic 35.0%
! GATTTAGGTTATAACAGAGG+AGG - chr1.4:64569260-64569279 None:intergenic 35.0%
! TCTCACTTCCTTTTCATCAA+TGG + chr1.4:64569610-64569629 MS.gene005062:intron 35.0%
!! AAGAAAGCTTGTGCTTTTTG+GGG + chr1.4:64569648-64569667 MS.gene005062:intron 35.0%
!! TCATCGCCTAAAACTTTTTC+AGG - chr1.4:64568395-64568414 None:intergenic 35.0%
!!! ATACTAGTTTTGGTTCTTCC+AGG + chr1.4:64567867-64567886 MS.gene005062:CDS 35.0%
!!! TGAAATGGATGGTTTTGAAG+TGG + chr1.4:64570285-64570304 MS.gene005062:CDS 35.0%
AAAAGGATCCTTCCAACATG+GGG - chr1.4:64569371-64569390 None:intergenic 40.0%
AAAGCAGATTCTGACATGAC+AGG + chr1.4:64569465-64569484 MS.gene005062:intron 40.0%
AAGTGCTTGTGTGTGTATCA+AGG + chr1.4:64568335-64568354 MS.gene005062:CDS 40.0%
AATCCTCCTTCATCAGATAG+CGG + chr1.4:64570432-64570451 MS.gene005062:CDS 40.0%
ACACAGAAACTGCATGATTG+TGG + chr1.4:64569518-64569537 MS.gene005062:intron 40.0%
ACCAATAACTGATCTGTTGC+AGG + chr1.4:64569058-64569077 MS.gene005062:intron 40.0%
AGACATTCACATGCCTGAAA+TGG + chr1.4:64570270-64570289 MS.gene005062:CDS 40.0%
AGCATACACACAATCCTTGT+TGG + chr1.4:64567072-64567091 MS.gene005062:CDS 40.0%
AGTGCTTGTGTGTGTATCAA+GGG + chr1.4:64568336-64568355 MS.gene005062:CDS 40.0%
AGTTAAGGATAGATGCATGC+TGG + chr1.4:64570381-64570400 MS.gene005062:CDS 40.0%
ATTACCAAACTCTCAGGGTT+TGG + chr1.4:64569991-64570010 MS.gene005062:CDS 40.0%
ATTCACATGCCTGAAATGGA+TGG + chr1.4:64570274-64570293 MS.gene005062:CDS 40.0%
CAAAAGGATCCTTCCAACAT+GGG - chr1.4:64569372-64569391 None:intergenic 40.0%
CAACGAAACAACAGATTGGT+AGG + chr1.4:64568630-64568649 MS.gene005062:CDS 40.0%
CACAACAGTGAATCTAAGGA+GGG + chr1.4:64568662-64568681 MS.gene005062:CDS 40.0%
CATCTGCTAGCAAAATCTTG+AGG - chr1.4:64570114-64570133 None:intergenic 40.0%
CCCTCTCCTTCTTAGAATTA+AGG + chr1.4:64567362-64567381 MS.gene005062:CDS 40.0%
CCTTCTACATTCCATGTTGA+GGG + chr1.4:64568295-64568314 MS.gene005062:CDS 40.0%
CTAGTAACAGCAGTTTCATC+AGG + chr1.4:64570187-64570206 MS.gene005062:CDS 40.0%
GCAACAGATCAGTTATTGGT+CGG - chr1.4:64569058-64569077 None:intergenic 40.0%
GCAACTCCTAGTTTAGATTC+AGG - chr1.4:64567729-64567748 None:intergenic 40.0%
GCAAGGATCAGGAAATTCAA+TGG + chr1.4:64570310-64570329 MS.gene005062:CDS 40.0%
GCATGTTAGGATGCTTACTA+GGG + chr1.4:64567467-64567486 MS.gene005062:CDS 40.0%
GCTATGATCAAAGGCCAATT+AGG - chr1.4:64570337-64570356 None:intergenic 40.0%
GGAAATTCAATGGCCCTAAT+TGG + chr1.4:64570320-64570339 MS.gene005062:CDS 40.0%
GGATGCTTACTAGGGAAATT+AGG + chr1.4:64567475-64567494 MS.gene005062:CDS 40.0%
GGCATCATTAGAGAAACATG+AGG + chr1.4:64569486-64569505 MS.gene005062:intron 40.0%
GGTGACACAATGTTGAAAGT+CGG + chr1.4:64568188-64568207 MS.gene005062:CDS 40.0%
GTTGACCTGCATCTTCATTT+GGG + chr1.4:64568856-64568875 MS.gene005062:intron 40.0%
TCAAAAGGATCCTTCCAACA+TGG - chr1.4:64569373-64569392 None:intergenic 40.0%
TCACAACAGTGAATCTAAGG+AGG + chr1.4:64568661-64568680 MS.gene005062:CDS 40.0%
TCCTTATCTCCAACACATCA+GGG - chr1.4:64567680-64567699 None:intergenic 40.0%
TCCTTCTACATTCCATGTTG+AGG + chr1.4:64568294-64568313 MS.gene005062:CDS 40.0%
TGTTGACCTGCATCTTCATT+TGG + chr1.4:64568855-64568874 MS.gene005062:intron 40.0%
TTCCTTATCTCCAACACATC+AGG - chr1.4:64567681-64567700 None:intergenic 40.0%
TTGAGGCCTGAATCTAAACT+AGG + chr1.4:64567720-64567739 MS.gene005062:CDS 40.0%
TTGATCCCAAATGAAGATGC+AGG - chr1.4:64568864-64568883 None:intergenic 40.0%
TTGTGTGTGTATCAAGGGTT+TGG + chr1.4:64568341-64568360 MS.gene005062:CDS 40.0%
TTTCTTGAGGCAGAATGTGA+TGG + chr1.4:64567395-64567414 MS.gene005062:CDS 40.0%
TTTGGATGCCGAATGATGAT+AGG + chr1.4:64567577-64567596 MS.gene005062:CDS 40.0%
! AGGCAGAATGTGATGGAATT+GGG + chr1.4:64567402-64567421 MS.gene005062:CDS 40.0%
! CCCTCACCTTAATTCTAAGA+AGG - chr1.4:64567371-64567390 None:intergenic 40.0%
! CGGGTTTTTGTTACAAGTGA+GGG + chr1.4:64568491-64568510 MS.gene005062:CDS 40.0%
! CTAAAGGGGTTAGGATTTTG+AGG + chr1.4:64567703-64567722 MS.gene005062:CDS 40.0%
! GTTTTTGTTACAAGTGAGGG+TGG + chr1.4:64568494-64568513 MS.gene005062:CDS 40.0%
! TATTTTTCCCCCATGTTGGA+AGG + chr1.4:64569360-64569379 MS.gene005062:intron 40.0%
! TCGGGTTTTTGTTACAAGTG+AGG + chr1.4:64568490-64568509 MS.gene005062:CDS 40.0%
! TTTGAGACTGTTGCAATGCT+CGG - chr1.4:64568028-64568047 None:intergenic 40.0%
!! CTTGTTATTCCCTTGCCTAT+TGG + chr1.4:64569839-64569858 MS.gene005062:intron 40.0%
!! GATAGCGGATGAACTTAGAT+CGG + chr1.4:64570447-64570466 MS.gene005062:CDS 40.0%
!! TGTTGAGCTTTCTAAGGCTT+TGG + chr1.4:64567536-64567555 MS.gene005062:CDS 40.0%
!!! AAGCTATTTTTCCCCCATGT+TGG + chr1.4:64569356-64569375 MS.gene005062:intron 40.0%
!!! AAGTTTTAGGCGATGAAGCA+AGG + chr1.4:64568399-64568418 MS.gene005062:CDS 40.0%
!!! AATGGATGGTTTTGAAGTGG+CGG + chr1.4:64570288-64570307 MS.gene005062:CDS 40.0%
!!! ACCGAGGGAATCTTGTTTTT+CGG + chr1.4:64568471-64568490 MS.gene005062:CDS 40.0%
!!! AGTTTTGGTTCTTCCAGGTT+CGG + chr1.4:64567872-64567891 MS.gene005062:CDS 40.0%
!!! CACTGACTTTTTGACCAACA+AGG - chr1.4:64567089-64567108 None:intergenic 40.0%
AAACTAGGAGTTGCGAGTAG+TGG + chr1.4:64567735-64567754 MS.gene005062:CDS 45.0%
AAAGGATCCTTCCAACATGG+GGG - chr1.4:64569370-64569389 None:intergenic 45.0%
AACACATCAGGGTCAATCAC+AGG - chr1.4:64567669-64567688 None:intergenic 45.0%
ACCCTGATGTGTTGGAGATA+AGG + chr1.4:64567676-64567695 MS.gene005062:CDS 45.0%
ACCTCAACTATCTCCATCTC+TGG - chr1.4:64567918-64567937 None:intergenic 45.0%
AGAGATGGAGATAGTTGAGG+TGG + chr1.4:64567917-64567936 MS.gene005062:CDS 45.0%
AGGAAGCTAGTTGGCATGTT+AGG + chr1.4:64567454-64567473 MS.gene005062:CDS 45.0%
AGGCCAATGCATTCAGTTGT+GGG + chr1.4:64568113-64568132 MS.gene005062:CDS 45.0%
ATCCCCACAACTGAATGCAT+TGG - chr1.4:64568119-64568138 None:intergenic 45.0%
ATGGAATTGGGGCAAGAAGT+TGG + chr1.4:64567414-64567433 MS.gene005062:CDS 45.0%
CAAGCACTTAGCAATGCAAG+CGG - chr1.4:64568324-64568343 None:intergenic 45.0%
CCAGGATATGCTCCTAAAAG+AGG - chr1.4:64569436-64569455 None:intergenic 45.0%
CCCGAAAAACAAGATTCCCT+CGG - chr1.4:64568475-64568494 None:intergenic 45.0%
CCCTCAACATGGAATGTAGA+AGG - chr1.4:64568298-64568317 None:intergenic 45.0%
CCTCATCATCACAGTTACAG+TGG - chr1.4:64567041-64567060 None:intergenic 45.0%
CGAAACAACAGATTGGTAGG+AGG + chr1.4:64568633-64568652 MS.gene005062:CDS 45.0%
CTAAGAAGGAGAGGGATCAA+CGG - chr1.4:64567357-64567376 None:intergenic 45.0%
CTCATATGAGGTGCATGTGA+GGG + chr1.4:64569031-64569050 MS.gene005062:intron 45.0%
CTGGAATGAATGGTGTGATC+CGG + chr1.4:64570404-64570423 MS.gene005062:CDS 45.0%
GCCTGCAACAGATCAGTTAT+TGG - chr1.4:64569062-64569081 None:intergenic 45.0%
GCTATCTGATGAAGGAGGAT+TGG - chr1.4:64570433-64570452 None:intergenic 45.0%
GCTTGAGCTTCAATATGTGC+CGG + chr1.4:64568684-64568703 MS.gene005062:CDS 45.0%
GGCATGTTAGGATGCTTACT+AGG + chr1.4:64567466-64567485 MS.gene005062:CDS 45.0%
GTCTCAAAAGAACGCGATGA+TGG + chr1.4:64568040-64568059 MS.gene005062:CDS 45.0%
GTTCATCCGCTATCTGATGA+AGG - chr1.4:64570441-64570460 None:intergenic 45.0%
TACAAGTGAGGGTGGTGATA+AGG + chr1.4:64568502-64568521 MS.gene005062:CDS 45.0%
TCCAGAGATGGAGATAGTTG+AGG + chr1.4:64567914-64567933 MS.gene005062:CDS 45.0%
TCCTTGACCTTCTAGTCAGA+TGG + chr1.4:64569125-64569144 MS.gene005062:intron 45.0%
TCTCATATGAGGTGCATGTG+AGG + chr1.4:64569030-64569049 MS.gene005062:intron 45.0%
TGACAAAGAAGCTACTCGAG+AGG + chr1.4:64570155-64570174 MS.gene005062:CDS 45.0%
TGGAATTGGGGCAAGAAGTT+GGG + chr1.4:64567415-64567434 MS.gene005062:CDS 45.0%
TGTGATTGACCCTGATGTGT+TGG + chr1.4:64567668-64567687 MS.gene005062:CDS 45.0%
TTCCAAACAGTGATGAGCCA+TGG + chr1.4:64568083-64568102 MS.gene005062:CDS 45.0%
! AACTATCTCCATCTCTGGAG+CGG - chr1.4:64567913-64567932 None:intergenic 45.0%
! AGGTGAGGGAGATTTTCTTG+AGG + chr1.4:64567382-64567401 MS.gene005062:CDS 45.0%
! CCACTGTAACTGTGATGATG+AGG + chr1.4:64567038-64567057 MS.gene005062:CDS 45.0%
! GAGGCAGAATGTGATGGAAT+TGG + chr1.4:64567401-64567420 MS.gene005062:CDS 45.0%
! GGCAGAATGTGATGGAATTG+GGG + chr1.4:64567403-64567422 MS.gene005062:CDS 45.0%
! GTTTTTCACCTGCACGAAGT+AGG - chr1.4:64570474-64570493 None:intergenic 45.0%
! TTTGGAATGACTTCCTAGCC+TGG - chr1.4:64568070-64568089 None:intergenic 45.0%
!! CCTCTTTTAGGAGCATATCC+TGG + chr1.4:64569433-64569452 MS.gene005062:intron 45.0%
!! GATGAAGGAGGATTGGTTTC+CGG - chr1.4:64570426-64570445 None:intergenic 45.0%
!!! AGCTTGTGCTTTTTGGGGTT+AGG + chr1.4:64569653-64569672 MS.gene005062:intron 45.0%
!!! ATCTGCTTTTTCGACTAGCC+AGG - chr1.4:64569454-64569473 None:intergenic 45.0%
!!! CCGAGGGAATCTTGTTTTTC+GGG + chr1.4:64568472-64568491 MS.gene005062:CDS 45.0%
!!! TGTGCTTTTTGGGGTTAGGT+GGG + chr1.4:64569657-64569676 MS.gene005062:intron 45.0%
!!! TTGTGCTTTTTGGGGTTAGG+TGG + chr1.4:64569656-64569675 MS.gene005062:intron 45.0%
AAAGAAGCTACTCGAGAGGC+TGG + chr1.4:64570159-64570178 MS.gene005062:CDS 50.0%
AAGAAGCTACTCGAGAGGCT+GGG + chr1.4:64570160-64570179 MS.gene005062:CDS 50.0%
AAGAGTCTCGACACAACGGT+TGG - chr1.4:64569159-64569178 None:intergenic 50.0%
AAGGATAGATGCATGCTGGC+TGG + chr1.4:64570385-64570404 MS.gene005062:CDS 50.0%
ACACAGGGCCTATTTCGTAC+AGG - chr1.4:64569876-64569895 None:intergenic 50.0%
ACTCCTGGACCAATAGGCAA+GGG - chr1.4:64569851-64569870 None:intergenic 50.0%
AGGAGTGGCCTGTACGAAAT+AGG + chr1.4:64569865-64569884 MS.gene005062:intron 50.0%
ATTCCCTTGCCTATTGGTCC+AGG + chr1.4:64569845-64569864 MS.gene005062:intron 50.0%
CATCCGCTATCTGATGAAGG+AGG - chr1.4:64570438-64570457 None:intergenic 50.0%
CTTCAATATGTGCCGGAGGT+TGG + chr1.4:64568691-64568710 MS.gene005062:CDS 50.0%
GAATTTCAAAGGAGGGACGC+CGG + chr1.4:64567821-64567840 MS.gene005062:CDS 50.0%
GAGGCCAATGCATTCAGTTG+TGG + chr1.4:64568112-64568131 MS.gene005062:CDS 50.0%
GATGGAGATAGTTGAGGTGG+TGG + chr1.4:64567920-64567939 MS.gene005062:CDS 50.0%
GCCATCTGACTAGAAGGTCA+AGG - chr1.4:64569129-64569148 None:intergenic 50.0%
GGCCAATGCATTCAGTTGTG+GGG + chr1.4:64568114-64568133 MS.gene005062:CDS 50.0%
GTCCATGGCTCATCACTGTT+TGG - chr1.4:64568088-64568107 None:intergenic 50.0%
GTGGTTGCCATCTGACTAGA+AGG - chr1.4:64569135-64569154 None:intergenic 50.0%
TATTTCGTACAGGCCACTCC+TGG - chr1.4:64569866-64569885 None:intergenic 50.0%
TCATCAGGGTTTGAGTGCCT+GGG + chr1.4:64570202-64570221 MS.gene005062:CDS 50.0%
TCTTCCAGGTTCGGACTCTA+GGG + chr1.4:64567881-64567900 MS.gene005062:CDS 50.0%
TGAGCTTCAATATGTGCCGG+AGG + chr1.4:64568687-64568706 MS.gene005062:CDS 50.0%
TGCACCAAACCCTGAGAGTT+TGG - chr1.4:64569998-64570017 None:intergenic 50.0%
TGCTCTTGTGTCGTGTGCAA+CGG + chr1.4:64567317-64567336 MS.gene005062:CDS 50.0%
TTCATCAGGGTTTGAGTGCC+TGG + chr1.4:64570201-64570220 MS.gene005062:CDS 50.0%
TTCTTCCAGGTTCGGACTCT+AGG + chr1.4:64567880-64567899 MS.gene005062:CDS 50.0%
! TGCATGCTGGCTGGAATGAA+TGG + chr1.4:64570394-64570413 MS.gene005062:CDS 50.0%
!! AACTCTCAGGGTTTGGTGCA+AGG + chr1.4:64569998-64570017 MS.gene005062:CDS 50.0%
!!! ATGGTTTTGAAGTGGCGGCA+AGG + chr1.4:64570293-64570312 MS.gene005062:CDS 50.0%
AGAAGGAGAGGGATCAACGG+CGG - chr1.4:64567354-64567373 None:intergenic 55.0%
AGATCGGTCCTACTTCGTGC+AGG + chr1.4:64570463-64570482 MS.gene005062:CDS 55.0%
CAAACCCTAGAGTCCGAACC+TGG - chr1.4:64567888-64567907 None:intergenic 55.0%
CACACGACACAAGAGCAGTG+AGG - chr1.4:64567314-64567333 None:intergenic 55.0%
CACCTACCTGTACCAACCTC+CGG - chr1.4:64568706-64568725 None:intergenic 55.0%
CACTCCTGGACCAATAGGCA+AGG - chr1.4:64569852-64569871 None:intergenic 55.0%
CAGAGCCACTTATAGCACCC+AGG - chr1.4:64570222-64570241 None:intergenic 55.0%
CTAGGAGTTGCGAGTAGTGG+CGG + chr1.4:64567738-64567757 MS.gene005062:CDS 55.0%
CTTGCCTATTGGTCCAGGAG+TGG + chr1.4:64569850-64569869 MS.gene005062:intron 55.0%
GAATGACTTCCTAGCCTGGC+TGG - chr1.4:64568066-64568085 None:intergenic 55.0%
GAGAACCGACGCGTGAGAAA+GGG - chr1.4:64567964-64567983 None:intergenic 55.0%
TCTCGACACAACGGTTGGAG+TGG - chr1.4:64569154-64569173 None:intergenic 55.0%
TGTTGAACACGCGTGACCGA+GGG + chr1.4:64568456-64568475 MS.gene005062:CDS 55.0%
TTGAAGTGGCGGCAAGGATC+AGG + chr1.4:64570299-64570318 MS.gene005062:CDS 55.0%
TTGTTGAACACGCGTGACCG+AGG + chr1.4:64568455-64568474 MS.gene005062:CDS 55.0%
! AGTTGAGGTGGTGGCTGATC+AGG + chr1.4:64567929-64567948 MS.gene005062:CDS 55.0%
! CAGTGATGAGCCATGGACTG+AGG + chr1.4:64568090-64568109 MS.gene005062:CDS 55.0%
! CTGGGTGCTATAAGTGGCTC+TGG + chr1.4:64570220-64570239 MS.gene005062:CDS 55.0%
! GAGTGCCTGGGTGCTATAAG+TGG + chr1.4:64570214-64570233 MS.gene005062:CDS 55.0%
! TGATGAGCCATGGACTGAGG+AGG + chr1.4:64568093-64568112 MS.gene005062:CDS 55.0%
!! CAGGTTCGGACTCTAGGGTT+TGG + chr1.4:64567886-64567905 MS.gene005062:CDS 55.0%
!! GGTGCTATAAGTGGCTCTGG+TGG + chr1.4:64570223-64570242 MS.gene005062:CDS 55.0%
!! TATGTGCCGGAGGTTGGTAC+AGG + chr1.4:64568697-64568716 MS.gene005062:CDS 55.0%
AGTTGCGAGTAGTGGCGGTG+GGG + chr1.4:64567743-64567762 MS.gene005062:CDS 60.0%
CAGGCCACTCCTGGACCAAT+AGG - chr1.4:64569857-64569876 None:intergenic 60.0%
CGACGCGTGAGAAAGGGCTA+CGG - chr1.4:64567958-64567977 None:intergenic 60.0%
CGAGAACCGACGCGTGAGAA+AGG - chr1.4:64567965-64567984 None:intergenic 60.0%
CGTAGCCCTTTCTCACGCGT+CGG + chr1.4:64567956-64567975 MS.gene005062:CDS 60.0%
GAGTTGCGAGTAGTGGCGGT+GGG + chr1.4:64567742-64567761 MS.gene005062:CDS 60.0%
GCAAGCGGCTTCCCTCAACA+TGG - chr1.4:64568309-64568328 None:intergenic 60.0%
GGTTTGGACCGCTCCAGAGA+TGG + chr1.4:64567902-64567921 MS.gene005062:CDS 60.0%
! GCATTGGCCTCCTCAGTCCA+TGG - chr1.4:64568103-64568122 None:intergenic 60.0%
! TGAGGAGTTGGGTGCTGTCG+CGG + chr1.4:64567770-64567789 MS.gene005062:CDS 60.0%
! TGAGGTGGTGGCTGATCAGG+TGG + chr1.4:64567932-64567951 MS.gene005062:CDS 60.0%
!! GGTGGGGGTACTGAGGAGTT+GGG + chr1.4:64567759-64567778 MS.gene005062:CDS 60.0%
!! TGCCGGAGGTTGGTACAGGT+AGG + chr1.4:64568701-64568720 MS.gene005062:intron 60.0%
CAAAGGAGGGACGCCGGAGT+TGG + chr1.4:64567827-64567846 MS.gene005062:CDS 65.0%
GGAGTTGCGAGTAGTGGCGG+TGG + chr1.4:64567741-64567760 MS.gene005062:CDS 65.0%
GTTGCGAGTAGTGGCGGTGG+GGG + chr1.4:64567744-64567763 MS.gene005062:CDS 65.0%
! CGATGATGGCCAGCCAGGCT+AGG + chr1.4:64568054-64568073 MS.gene005062:CDS 65.0%
! GAACGCGATGATGGCCAGCC+AGG + chr1.4:64568049-64568068 MS.gene005062:CDS 65.0%
!! CGGTGGGGGTACTGAGGAGT+TGG + chr1.4:64567758-64567777 MS.gene005062:CDS 65.0%
!! TAGTGGCGGTGGGGGTACTG+AGG + chr1.4:64567752-64567771 MS.gene005062:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 64566955 64570498 64566955 ID=MS.gene005062
chr1.4 mRNA 64566955 64570498 64566955 ID=MS.gene005062.t1;Parent=MS.gene005062
chr1.4 exon 64566955 64568718 64566955 ID=MS.gene005062.t1.exon1;Parent=MS.gene005062.t1
chr1.4 CDS 64566955 64568718 64566955 ID=cds.MS.gene005062.t1;Parent=MS.gene005062.t1
chr1.4 exon 64569968 64570498 64569968 ID=MS.gene005062.t1.exon2;Parent=MS.gene005062.t1
chr1.4 CDS 64569968 64570498 64569968 ID=cds.MS.gene005062.t1;Parent=MS.gene005062.t1
Gene Sequence

>MS.gene005062

ATGAAAACTAAAACTCTTATTCTGTTGTTATTGCTTTTTAATCTTACTCTTTATGCTTCTGCTACTGATTCTGATGAATATGACCACTGTAACTGTGATGATGAGGAAGCACTTTTCAGCATACACACAATCCTTGTTGGTCAAAAAGTCAGTGATTTTTTCATTGCAATTGCATATTTTTCAATACCAATTGAGCTTCTTTACTTTGTTAGTCGTTCAAATGTTCCTTTCAAATTGTTGTTTCTTCAATTCATAGCCTTCATAGTTCTATGTGGTATGACTCATTTACTCAATGCTTATTCTTATCATAGTCATCCTTCTTTTCAACTCTTGCTTTCCCTTACTGTTGCTAAATTCCTCACTGCTCTTGTGTCGTGTGCAACGGCATTGACACTTCCGCCGTTGATCCCTCTCCTTCTTAGAATTAAGGTGAGGGAGATTTTCTTGAGGCAGAATGTGATGGAATTGGGGCAAGAAGTTGGGATTATGAAGAAACAAAAGGAAGCTAGTTGGCATGTTAGGATGCTTACTAGGGAAATTAGGAAGTCTCTTGATAAACATACAATTTTGTATACTACTCTTGTTGAGCTTTCTAAGGCTTTGGATTTGCATAATTGTGCTGTTTGGATGCCGAATGATGATAGGAGAGAGATGTATTTGACTCATGAATTGAAATCGGATTCGGGTAAGAGTTTTCATCATAATTCTATTCCTGTGATTGACCCTGATGTGTTGGAGATAAGGAAAACTAAAGGGGTTAGGATTTTGAGGCCTGAATCTAAACTAGGAGTTGCGAGTAGTGGCGGTGGGGGTACTGAGGAGTTGGGTGCTGTCGCGGCTATTCGTATGCCGATGCTTCATGTTTCGAATTTCAAAGGAGGGACGCCGGAGTTGGTTGATACATGTTATGCTATACTAGTTTTGGTTCTTCCAGGTTCGGACTCTAGGGTTTGGACCGCTCCAGAGATGGAGATAGTTGAGGTGGTGGCTGATCAGGTGGCCGTAGCCCTTTCTCACGCGTCGGTTCTCGAAGAGTCTTATTTAATGAGAGAGAAACTCGAAGAGCAAAACCGAGCATTGCAACAGTCTCAAAAGAACGCGATGATGGCCAGCCAGGCTAGGAAGTCATTCCAAACAGTGATGAGCCATGGACTGAGGAGGCCAATGCATTCAGTTGTGGGGATGCTTTCATTGTTTCAAGAGGGTAATATGAGGACTGAACAAAAGATTATTGGTGACACAATGTTGAAAGTCGGCAATGTGCTCTCGAGTTTAGTAAACGATGTAATGGATATCTCTGAAAATAAAAAGGGTGGCCTTCAGTTAGAGATGAAACCTTTCCTTCTACATTCCATGTTGAGGGAAGCCGCTTGCATTGCTAAGTGCTTGTGTGTGTATCAAGGGTTTGGTTTTCAAATTGATGTCGAAAAGTCTTTGCCTGAAAAAGTTTTAGGCGATGAAGCAAGGACTTTTCAAGTAATTATGCATATTATTGGCTATTTGTTGAACACGCGTGACCGAGGGAATCTTGTTTTTCGGGTTTTTGTTACAAGTGAGGGTGGTGATAAGGATGACAAAAAAATTGGTGTATGGAGATCGAGCAGCCCAGTTGAGTATGTAGACATAAAATTTGATTTTCAGATTACTGGTAGTTCTCAGTCAGATGAACCGATTTCAACGAAACAACAGATTGGTAGGAGGCTGAATCACAACAGTGAATCTAAGGAGGGCTTGAGCTTCAATATGTGCCGGAGGTTGGTACAGGTAGGTGCATCACTGTCTATATTATATATGTGGATCATAATCTCCTTGATTGTCTATGTTATGTCTGAGTATCAAATATGTCATTTATTGTTCAAATTTAATGCTTAAAGAATGATGTTTGGTTTGACGAATTTAATGTTGACCTGCATCTTCATTTGGGATCAAAATGAATGCTAGCATGCTTGCTACTAAACTTTAGTGAAAGTTTTTGTTTCTTCAAACCATTCATTAAGGATGTAAAATTATGTGTGATCACTTATCTGTTCATTCGAAGTCACTGATTACTTATATTTAAAAAGTGCAATAACTGATCTCATATGAGGTGCATGTGAGGGTCCGACCAATAACTGATCTGTTGCAGGCAATCTTACCCTGCAATTGCAAGAAACTGATTCTACGAATCGGATCCTTGACCTTCTAGTCAGATGGCAACCACTCCAACCGTTGTGTCGAGACTCTTTTTTTCACTGATAACTTATATTTGACAATTTTTCGTAGATTTCTCTCTCCATACTAATTTCAGCTAAGAGCTGACAAGCCTCCTCTGTTATAACCTAAATCTTTCAACATAAGAAATAAAATAAAAAAATTAATAAGAACATAATTGTAATCCTTTTATCTTAATAGTATCACGGAGAAGCTATTTTTCCCCCATGTTGGAAGGATCCTTTTGAGTTTACATCACACAAGCATGCATTTGCATAATTTTGTTTTCCTCTTTTAGGAGCATATCCTGGCTAGTCGAAAAAGCAGATTCTGACATGACAGGCATCATTAGAGAAACATGAGGATTGTAATAACACAGAAACTGCATGATTGTGGTGTCTTTTCTTGAATTGTAAGGTCATTCAGTTAGTTTTAGAATTCCAATATGAACAAGACTACAAAAAATCTCACTTCCTTTTCATCAATGGAAATAGGTGAACAATAAGAAAGCTTGTGCTTTTTGGGGTTAGGTGGGTGCATTATTTTATTATATAGAAAAATAATAGTAAAGTAGCATCTTTTGTGCCTTAAAATCTGGTAAAGTAGGACCTTACTTCTTTATACTTATAATAGTATCCAATTATTTTATTAAAGCACTATTATGATTTCTCTCTCTTTTTGCCACAAATCAGAACTTGTTATTCCCTTGCCTATTGGTCCAGGAGTGGCCTGTACGAAATAGGCCCTGTGTAATTATTTAATTAATCATGGCATGCTTGTTTTTGTAATTCTGACTTTATTTACATTGTGGAATCTTATGCAGATAATGCAAGGTAATATATGGATATTACCAAACTCTCAGGGTTTGGTGCAAGGCGTGTCACTTCTTCTAAAGTTTCAGATAGGACCATCGCTTGAAAGATACATGTTTGCACCTAAAGATTATTCAAATTCACAGTTTGGAGGCCTCAAGATTTTGCTAGCAGATGATGATAGTTTAAATAGGATCGTGACAAAGAAGCTACTCGAGAGGCTGGGCTGTCTAGTAACAGCAGTTTCATCAGGGTTTGAGTGCCTGGGTGCTATAAGTGGCTCTGGTGGTAACTCATTCAAAATTATCATGTTAGACATTCACATGCCTGAAATGGATGGTTTTGAAGTGGCGGCAAGGATCAGGAAATTCAATGGCCCTAATTGGCCTTTGATCATAGCTCTTATAGCTAATGCAGAAGAGCAAGTTAAGGATAGATGCATGCTGGCTGGAATGAATGGTGTGATCCGGAAACCAATCCTCCTTCATCAGATAGCGGATGAACTTAGATCGGTCCTACTTCGTGCAGGTGAAAAACTGTGA

Protein sequence

>MS.gene005062.t1

MKTKTLILLLLLFNLTLYASATDSDEYDHCNCDDEEALFSIHTILVGQKVSDFFIAIAYFSIPIELLYFVSRSNVPFKLLFLQFIAFIVLCGMTHLLNAYSYHSHPSFQLLLSLTVAKFLTALVSCATALTLPPLIPLLLRIKVREIFLRQNVMELGQEVGIMKKQKEASWHVRMLTREIRKSLDKHTILYTTLVELSKALDLHNCAVWMPNDDRREMYLTHELKSDSGKSFHHNSIPVIDPDVLEIRKTKGVRILRPESKLGVASSGGGGTEELGAVAAIRMPMLHVSNFKGGTPELVDTCYAILVLVLPGSDSRVWTAPEMEIVEVVADQVAVALSHASVLEESYLMREKLEEQNRALQQSQKNAMMASQARKSFQTVMSHGLRRPMHSVVGMLSLFQEGNMRTEQKIIGDTMLKVGNVLSSLVNDVMDISENKKGGLQLEMKPFLLHSMLREAACIAKCLCVYQGFGFQIDVEKSLPEKVLGDEARTFQVIMHIIGYLLNTRDRGNLVFRVFVTSEGGDKDDKKIGVWRSSSPVEYVDIKFDFQITGSSQSDEPISTKQQIGRRLNHNSESKEGLSFNMCRRLVQIMQGNIWILPNSQGLVQGVSLLLKFQIGPSLERYMFAPKDYSNSQFGGLKILLADDDSLNRIVTKKLLERLGCLVTAVSSGFECLGAISGSGGNSFKIIMLDIHMPEMDGFEVAARIRKFNGPNWPLIIALIANAEEQVKDRCMLAGMNGVIRKPILLHQIADELRSVLLRAGEKL