Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005062.t1 | XP_003590928.2 | 98.5 | 731 | 11 | 0 | 34 | 764 | 32 | 762 | 0.00E+00 | 1396.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005062.t1 | Q9ZTP3 | 55.8 | 740 | 313 | 6 | 34 | 762 | 30 | 766 | 5.2e-219 | 762.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005062.t1 | G7I672 | 98.5 | 731 | 11 | 0 | 34 | 764 | 32 | 762 | 0.0e+00 | 1396.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene005062.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene048846 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene030357 | PPI |
MS.gene005062 | MS.gene048848 | PPI |
MS.gene004757 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene90941 | PPI |
MS.gene048850 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene013718 | PPI |
MS.gene32142 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene65517 | PPI |
MS.gene90940 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene048847 | PPI |
MS.gene02513 | MS.gene005062 | PPI |
MS.gene073869 | MS.gene005062 | PPI |
MS.gene005062 | MS.gene51452 | PPI |
MS.gene052918 | MS.gene005062 | PPI |
MS.gene02623 | MS.gene005062 | PPI |
MS.gene55723 | MS.gene005062 | PPI |
MS.gene053421 | MS.gene005062 | PPI |
MS.gene63969 | MS.gene005062 | PPI |
MS.gene048849 | MS.gene005062 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005062.t1 | MTR_1g079790 | 98.555 | 761 | 11 | 0 | 4 | 764 | 2 | 762 | 0.0 | 1545 |
MS.gene005062.t1 | MTR_1g079790 | 97.466 | 592 | 15 | 0 | 4 | 595 | 2 | 593 | 0.0 | 1189 |
MS.gene005062.t1 | MTR_7g116330 | 71.660 | 741 | 203 | 6 | 26 | 764 | 30 | 765 | 0.0 | 1090 |
MS.gene005062.t1 | MTR_1g073840 | 55.817 | 765 | 320 | 8 | 4 | 760 | 3 | 757 | 0.0 | 860 |
MS.gene005062.t1 | MTR_1g044210 | 51.783 | 757 | 348 | 9 | 10 | 757 | 9 | 757 | 0.0 | 767 |
MS.gene005062.t1 | MTR_4g031150 | 37.885 | 747 | 434 | 17 | 28 | 759 | 52 | 783 | 3.32e-159 | 481 |
MS.gene005062.t1 | MTR_7g109150 | 37.402 | 639 | 361 | 15 | 28 | 645 | 3 | 623 | 1.35e-110 | 350 |
MS.gene005062.t1 | MTR_4g134880 | 56.164 | 73 | 31 | 1 | 689 | 760 | 1 | 73 | 1.81e-19 | 83.6 |
MS.gene005062.t1 | MTR_8g080770 | 33.083 | 133 | 79 | 3 | 636 | 760 | 731 | 861 | 4.46e-15 | 80.1 |
MS.gene005062.t1 | MTR_8g080770 | 25.595 | 168 | 125 | 0 | 352 | 519 | 262 | 429 | 1.69e-12 | 71.6 |
MS.gene005062.t1 | MTR_8g080770 | 33.083 | 133 | 79 | 3 | 636 | 760 | 840 | 970 | 4.77e-15 | 80.1 |
MS.gene005062.t1 | MTR_8g080770 | 25.595 | 168 | 125 | 0 | 352 | 519 | 371 | 538 | 1.58e-12 | 71.6 |
MS.gene005062.t1 | MTR_3g085130 | 34.921 | 126 | 71 | 3 | 636 | 753 | 695 | 817 | 1.38e-13 | 75.1 |
MS.gene005062.t1 | MTR_3g085130 | 23.810 | 168 | 128 | 0 | 352 | 519 | 216 | 383 | 1.31e-12 | 72.0 |
MS.gene005062.t1 | MTR_3g085130 | 34.921 | 126 | 71 | 3 | 636 | 753 | 905 | 1027 | 2.05e-13 | 74.7 |
MS.gene005062.t1 | MTR_3g085130 | 23.810 | 168 | 128 | 0 | 352 | 519 | 426 | 593 | 1.15e-12 | 72.4 |
MS.gene005062.t1 | MTR_8g075340 | 23.544 | 395 | 246 | 15 | 362 | 717 | 460 | 837 | 2.92e-13 | 74.3 |
MS.gene005062.t1 | MTR_8g075340 | 33.077 | 130 | 62 | 3 | 636 | 744 | 1028 | 1153 | 8.44e-12 | 69.7 |
MS.gene005062.t1 | MTR_8g106150 | 25.000 | 208 | 153 | 1 | 352 | 556 | 362 | 569 | 5.74e-13 | 73.2 |
MS.gene005062.t1 | MTR_8g106150 | 25.000 | 208 | 153 | 1 | 352 | 556 | 119 | 326 | 7.77e-13 | 72.8 |
MS.gene005062.t1 | MTR_3g105590 | 26.531 | 196 | 128 | 5 | 329 | 519 | 331 | 515 | 3.29e-11 | 67.4 |
MS.gene005062.t1 | MTR_5g022470 | 24.274 | 379 | 229 | 13 | 362 | 700 | 498 | 858 | 5.65e-11 | 67.0 |
MS.gene005062.t1 | MTR_5g022470 | 24.274 | 379 | 229 | 13 | 362 | 700 | 498 | 858 | 6.09e-11 | 66.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene005062.t1 | AT3G04580 | 59.813 | 749 | 286 | 8 | 25 | 762 | 22 | 766 | 0.0 | 872 |
MS.gene005062.t1 | AT3G04580 | 59.813 | 749 | 286 | 8 | 25 | 762 | 22 | 766 | 0.0 | 872 |
MS.gene005062.t1 | AT3G23150 | 51.018 | 786 | 345 | 14 | 4 | 764 | 3 | 773 | 0.0 | 726 |
MS.gene005062.t1 | AT3G23150 | 52.333 | 600 | 260 | 10 | 4 | 589 | 3 | 590 | 0.0 | 573 |
MS.gene005062.t1 | AT1G04310 | 46.772 | 635 | 305 | 10 | 4 | 619 | 3 | 623 | 4.28e-178 | 525 |
MS.gene005062.t1 | AT1G04310 | 46.772 | 635 | 305 | 10 | 4 | 619 | 3 | 623 | 4.28e-178 | 525 |
MS.gene005062.t1 | AT1G66340 | 40.162 | 742 | 414 | 15 | 30 | 757 | 4 | 729 | 4.56e-168 | 503 |
MS.gene005062.t1 | AT2G40940 | 37.479 | 603 | 349 | 14 | 31 | 618 | 3 | 592 | 6.36e-110 | 348 |
MS.gene005062.t1 | AT5G35750 | 23.823 | 361 | 224 | 9 | 353 | 668 | 567 | 921 | 4.25e-17 | 86.7 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 440 | 615 | 1.95e-15 | 81.3 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 428 | 603 | 1.98e-15 | 81.3 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 428 | 603 | 1.98e-15 | 81.3 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 428 | 603 | 1.98e-15 | 81.3 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 428 | 603 | 1.98e-15 | 81.3 |
MS.gene005062.t1 | AT2G01830 | 25.568 | 176 | 131 | 0 | 352 | 527 | 451 | 626 | 2.35e-15 | 81.3 |
MS.gene005062.t1 | AT1G27320 | 25.134 | 187 | 140 | 0 | 333 | 519 | 410 | 596 | 4.34e-14 | 77.0 |
MS.gene005062.t1 | AT5G10720 | 23.364 | 321 | 207 | 11 | 329 | 633 | 327 | 624 | 4.80e-12 | 70.1 |
MS.gene005062.t1 | AT2G17820 | 23.120 | 359 | 225 | 9 | 363 | 684 | 488 | 832 | 1.66e-11 | 68.6 |
Find 178 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGTAATTATGCATATTAT+TGG | 0.179884 | 1.4:+64568428 | MS.gene005062:CDS |
CCCTCTCCTTCTTAGAATTA+AGG | 0.206742 | 1.4:+64567362 | MS.gene005062:CDS |
GGATATCTCTGAAAATAAAA+AGG | 0.209690 | 1.4:+64568244 | MS.gene005062:CDS |
TGTGAATTTGAATAATCTTT+AGG | 0.255453 | 1.4:-64570079 | None:intergenic |
TTCATCAGGGTTTGAGTGCC+TGG | 0.258763 | 1.4:+64570201 | MS.gene005062:CDS |
GATGAAGGAGGATTGGTTTC+CGG | 0.271626 | 1.4:-64570423 | None:intergenic |
GCTATGATCAAAGGCCAATT+AGG | 0.272954 | 1.4:-64570334 | None:intergenic |
TGTTGAGCTTTCTAAGGCTT+TGG | 0.281832 | 1.4:+64567536 | MS.gene005062:CDS |
TACTCTTGTTGAGCTTTCTA+AGG | 0.286989 | 1.4:+64567530 | MS.gene005062:CDS |
TGCACCAAACCCTGAGAGTT+TGG | 0.309721 | 1.4:-64569995 | None:intergenic |
TTTATGTCTACATACTCAAC+TGG | 0.311908 | 1.4:-64568560 | None:intergenic |
GGAAATTCAATGGCCCTAAT+TGG | 0.315301 | 1.4:+64570320 | MS.gene005062:CDS |
GGATGCTTACTAGGGAAATT+AGG | 0.316546 | 1.4:+64567475 | MS.gene005062:CDS |
ATGTTATGCTATACTAGTTT+TGG | 0.328451 | 1.4:+64567857 | MS.gene005062:CDS |
GATTATTCAAATTCACAGTT+TGG | 0.328563 | 1.4:+64570085 | MS.gene005062:CDS |
AGGAAGCTAGTTGGCATGTT+AGG | 0.342538 | 1.4:+64567454 | MS.gene005062:CDS |
AGGACTGAACAAAAGATTAT+TGG | 0.343143 | 1.4:+64568167 | MS.gene005062:CDS |
CAGATGATGATAGTTTAAAT+AGG | 0.352906 | 1.4:+64570128 | MS.gene005062:CDS |
ACTTCAAAACCATCCATTTC+AGG | 0.357064 | 1.4:-64570283 | None:intergenic |
ATCTGTTGTTTCGTTGAAAT+CGG | 0.358826 | 1.4:-64568623 | None:intergenic |
ATTTGCATAATTGTGCTGTT+TGG | 0.362682 | 1.4:+64567559 | MS.gene005062:CDS |
TTCCTTATCTCCAACACATC+AGG | 0.366420 | 1.4:-64567678 | None:intergenic |
TTCTTCCAGGTTCGGACTCT+AGG | 0.375382 | 1.4:+64567880 | MS.gene005062:CDS |
CTAGTAACAGCAGTTTCATC+AGG | 0.380902 | 1.4:+64570187 | MS.gene005062:CDS |
CAGGTTCGGACTCTAGGGTT+TGG | 0.381488 | 1.4:+64567886 | MS.gene005062:CDS |
GGCATGTTAGGATGCTTACT+AGG | 0.396870 | 1.4:+64567466 | MS.gene005062:CDS |
TGGAATTGGGGCAAGAAGTT+GGG | 0.397658 | 1.4:+64567415 | MS.gene005062:CDS |
TCATGAATTGAAATCGGATT+CGG | 0.398997 | 1.4:+64567617 | MS.gene005062:CDS |
TTTGACTCATGAATTGAAAT+CGG | 0.399140 | 1.4:+64567611 | MS.gene005062:CDS |
GAATCACAACAGTGAATCTA+AGG | 0.402957 | 1.4:+64568658 | MS.gene005062:CDS |
ATGGAATTGGGGCAAGAAGT+TGG | 0.404627 | 1.4:+64567414 | MS.gene005062:CDS |
GTCCATGGCTCATCACTGTT+TGG | 0.409431 | 1.4:-64568085 | None:intergenic |
CCCTCAACATGGAATGTAGA+AGG | 0.409888 | 1.4:-64568295 | None:intergenic |
CATGAATTGAAATCGGATTC+GGG | 0.409935 | 1.4:+64567618 | MS.gene005062:CDS |
AGATAATGCAAGGTAATATA+TGG | 0.410537 | 1.4:+64569966 | MS.gene005062:intron |
AGGCAGAATGTGATGGAATT+GGG | 0.410985 | 1.4:+64567402 | MS.gene005062:CDS |
AGTTGAGGTGGTGGCTGATC+AGG | 0.412583 | 1.4:+64567929 | MS.gene005062:CDS |
GAGGCAGAATGTGATGGAAT+TGG | 0.412904 | 1.4:+64567401 | MS.gene005062:CDS |
ACAAAGTAAAGAAGCTCAAT+TGG | 0.414136 | 1.4:-64567141 | None:intergenic |
TTGAAGTGGCGGCAAGGATC+AGG | 0.415267 | 1.4:+64570299 | MS.gene005062:CDS |
ATTACCAAACTCTCAGGGTT+TGG | 0.429450 | 1.4:+64569991 | MS.gene005062:CDS |
ATGGATATTACCAAACTCTC+AGG | 0.429769 | 1.4:+64569985 | MS.gene005062:CDS |
AGCATACACACAATCCTTGT+TGG | 0.430934 | 1.4:+64567072 | MS.gene005062:CDS |
CCTTCTACATTCCATGTTGA+GGG | 0.431332 | 1.4:+64568295 | MS.gene005062:CDS |
ATCTCTCTCCTATCATCATT+CGG | 0.433427 | 1.4:-64567585 | None:intergenic |
ACCTCAACTATCTCCATCTC+TGG | 0.436575 | 1.4:-64567915 | None:intergenic |
TTGTGTGTGTATCAAGGGTT+TGG | 0.438334 | 1.4:+64568341 | MS.gene005062:CDS |
GCAACTCCTAGTTTAGATTC+AGG | 0.441706 | 1.4:-64567726 | None:intergenic |
TTTGAGACTGTTGCAATGCT+CGG | 0.446015 | 1.4:-64568025 | None:intergenic |
CAAACCCTAGAGTCCGAACC+TGG | 0.447027 | 1.4:-64567885 | None:intergenic |
GAAAGCAAGAGTTGAAAAGA+AGG | 0.447107 | 1.4:-64567270 | None:intergenic |
TAAGGAAAACTAAAGGGGTT+AGG | 0.448583 | 1.4:+64567694 | MS.gene005062:CDS |
CTATGATCAAAGGCCAATTA+GGG | 0.451338 | 1.4:-64570333 | None:intergenic |
CTGGGTGCTATAAGTGGCTC+TGG | 0.456114 | 1.4:+64570220 | MS.gene005062:CDS |
CTTCTTCTAAAGTTTCAGAT+AGG | 0.459490 | 1.4:+64570028 | MS.gene005062:CDS |
TACAAGTGAGGGTGGTGATA+AGG | 0.459678 | 1.4:+64568502 | MS.gene005062:CDS |
GAACGCGATGATGGCCAGCC+AGG | 0.462578 | 1.4:+64568049 | MS.gene005062:CDS |
TGGAGATAAGGAAAACTAAA+GGG | 0.470604 | 1.4:+64567688 | MS.gene005062:CDS |
TAATGCAGAAGAGCAAGTTA+AGG | 0.472874 | 1.4:+64570366 | MS.gene005062:CDS |
AGACATTCACATGCCTGAAA+TGG | 0.474093 | 1.4:+64570270 | MS.gene005062:CDS |
TCCTTCTACATTCCATGTTG+AGG | 0.474448 | 1.4:+64568294 | MS.gene005062:CDS |
GTTGCGAGTAGTGGCGGTGG+GGG | 0.474504 | 1.4:+64567744 | MS.gene005062:CDS |
GGAGTTGCGAGTAGTGGCGG+TGG | 0.474808 | 1.4:+64567741 | MS.gene005062:CDS |
CAAAGGAGGGACGCCGGAGT+TGG | 0.475152 | 1.4:+64567827 | MS.gene005062:CDS |
CTTCATGTTTCGAATTTCAA+AGG | 0.475335 | 1.4:+64567810 | MS.gene005062:CDS |
AAAGAAGCTACTCGAGAGGC+TGG | 0.477400 | 1.4:+64570159 | MS.gene005062:CDS |
GAGTTGCGAGTAGTGGCGGT+GGG | 0.478888 | 1.4:+64567742 | MS.gene005062:CDS |
CGAGAACCGACGCGTGAGAA+AGG | 0.484376 | 1.4:-64567962 | None:intergenic |
ACCCTGATGTGTTGGAGATA+AGG | 0.484829 | 1.4:+64567676 | MS.gene005062:CDS |
GAATGACTTCCTAGCCTGGC+TGG | 0.485805 | 1.4:-64568063 | None:intergenic |
TCATCAGGGTTTGAGTGCCT+GGG | 0.491049 | 1.4:+64570202 | MS.gene005062:CDS |
TCTTCCAGGTTCGGACTCTA+GGG | 0.492992 | 1.4:+64567881 | MS.gene005062:CDS |
AAGTGCTTGTGTGTGTATCA+AGG | 0.498129 | 1.4:+64568335 | MS.gene005062:CDS |
TGGGATTATGAAGAAACAAA+AGG | 0.498382 | 1.4:+64567434 | MS.gene005062:CDS |
TTTGGAATGACTTCCTAGCC+TGG | 0.501343 | 1.4:-64568067 | None:intergenic |
TTTGGATGCCGAATGATGAT+AGG | 0.501945 | 1.4:+64567577 | MS.gene005062:CDS |
TTGGAGATAAGGAAAACTAA+AGG | 0.504670 | 1.4:+64567687 | MS.gene005062:CDS |
TTGAGGCCTGAATCTAAACT+AGG | 0.504811 | 1.4:+64567720 | MS.gene005062:CDS |
TGAGGAATTTAGCAACAGTA+AGG | 0.504921 | 1.4:-64567293 | None:intergenic |
AGGCCAATGCATTCAGTTGT+GGG | 0.505607 | 1.4:+64568113 | MS.gene005062:CDS |
CCCTCACCTTAATTCTAAGA+AGG | 0.509242 | 1.4:-64567368 | None:intergenic |
CGATGATGGCCAGCCAGGCT+AGG | 0.509807 | 1.4:+64568054 | MS.gene005062:CDS |
TGAAGAAACAACAATTTGAA+AGG | 0.513054 | 1.4:-64567180 | None:intergenic |
GAGTTTAGTAAACGATGTAA+TGG | 0.515957 | 1.4:+64568223 | MS.gene005062:CDS |
AACTCTCAGGGTTTGGTGCA+AGG | 0.516591 | 1.4:+64569998 | MS.gene005062:CDS |
GAGTGCCTGGGTGCTATAAG+TGG | 0.519942 | 1.4:+64570214 | MS.gene005062:CDS |
GCATTGGCCTCCTCAGTCCA+TGG | 0.520880 | 1.4:-64568100 | None:intergenic |
AAGGATAGATGCATGCTGGC+TGG | 0.523016 | 1.4:+64570385 | MS.gene005062:CDS |
GTCTCAAAAGAACGCGATGA+TGG | 0.526187 | 1.4:+64568040 | MS.gene005062:CDS |
TTTCTTGAGGCAGAATGTGA+TGG | 0.526914 | 1.4:+64567395 | MS.gene005062:CDS |
GAGAACCGACGCGTGAGAAA+GGG | 0.532015 | 1.4:-64567961 | None:intergenic |
TGTTGAACACGCGTGACCGA+GGG | 0.532022 | 1.4:+64568456 | MS.gene005062:CDS |
GCTATCTGATGAAGGAGGAT+TGG | 0.533500 | 1.4:-64570430 | None:intergenic |
TGTGATTGACCCTGATGTGT+TGG | 0.534459 | 1.4:+64567668 | MS.gene005062:CDS |
TATGTGCCGGAGGTTGGTAC+AGG | 0.536453 | 1.4:+64568697 | MS.gene005062:CDS |
GCAAGGATCAGGAAATTCAA+TGG | 0.537123 | 1.4:+64570310 | MS.gene005062:CDS |
CTTCAATATGTGCCGGAGGT+TGG | 0.538586 | 1.4:+64568691 | MS.gene005062:CDS |
GCTATAAGAGCTATGATCAA+AGG | 0.539373 | 1.4:-64570343 | None:intergenic |
CAACGAAACAACAGATTGGT+AGG | 0.539988 | 1.4:+64568630 | MS.gene005062:CDS |
CATACCACATAGAACTATGA+AGG | 0.542546 | 1.4:-64567211 | None:intergenic |
GAGGCCAATGCATTCAGTTG+TGG | 0.544582 | 1.4:+64568112 | MS.gene005062:CDS |
TTGTTGAACACGCGTGACCG+AGG | 0.544947 | 1.4:+64568455 | MS.gene005062:CDS |
GGTTTGGACCGCTCCAGAGA+TGG | 0.547219 | 1.4:+64567902 | MS.gene005062:CDS |
ATTTCAACGAAACAACAGAT+TGG | 0.547312 | 1.4:+64568626 | MS.gene005062:CDS |
TGTTTCAAGAGGGTAATATG+AGG | 0.554581 | 1.4:+64568147 | MS.gene005062:CDS |
AACATGTATCTTTCAAGCGA+TGG | 0.555713 | 1.4:-64570052 | None:intergenic |
TGCATGCTGGCTGGAATGAA+TGG | 0.556631 | 1.4:+64570394 | MS.gene005062:CDS |
GTTCATCCGCTATCTGATGA+AGG | 0.557017 | 1.4:-64570438 | None:intergenic |
AGTGCTTGTGTGTGTATCAA+GGG | 0.557402 | 1.4:+64568336 | MS.gene005062:CDS |
CTGGAATGAATGGTGTGATC+CGG | 0.559043 | 1.4:+64570404 | MS.gene005062:CDS |
AGTTGCGAGTAGTGGCGGTG+GGG | 0.561735 | 1.4:+64567743 | MS.gene005062:CDS |
ATGTTTCGAATTTCAAAGGA+GGG | 0.563184 | 1.4:+64567814 | MS.gene005062:CDS |
GAATTTCAAAGGAGGGACGC+CGG | 0.563898 | 1.4:+64567821 | MS.gene005062:CDS |
CACCTACCTGTACCAACCTC+CGG | 0.564583 | 1.4:-64568703 | None:intergenic |
AACACATCAGGGTCAATCAC+AGG | 0.564986 | 1.4:-64567666 | None:intergenic |
AACATGGAATGTAGAAGGAA+AGG | 0.568366 | 1.4:-64568290 | None:intergenic |
CGTAGCCCTTTCTCACGCGT+CGG | 0.568817 | 1.4:+64567956 | MS.gene005062:CDS |
AAATTCGAAACATGAAGCAT+CGG | 0.568829 | 1.4:-64567804 | None:intergenic |
TATTCAAATTCACAGTTTGG+AGG | 0.570060 | 1.4:+64570088 | MS.gene005062:CDS |
ATCCCCACAACTGAATGCAT+TGG | 0.570182 | 1.4:-64568116 | None:intergenic |
CATGTTTCGAATTTCAAAGG+AGG | 0.571827 | 1.4:+64567813 | MS.gene005062:CDS |
GCATGTTAGGATGCTTACTA+GGG | 0.572208 | 1.4:+64567467 | MS.gene005062:CDS |
AGATCGGTCCTACTTCGTGC+AGG | 0.573170 | 1.4:+64570463 | MS.gene005062:CDS |
TGCTCTTGTGTCGTGTGCAA+CGG | 0.573831 | 1.4:+64567317 | MS.gene005062:CDS |
AGAAACAAAAGGAAGCTAGT+TGG | 0.575842 | 1.4:+64567445 | MS.gene005062:CDS |
ACCTTAATTCTAAGAAGGAG+AGG | 0.576433 | 1.4:-64567363 | None:intergenic |
ATTCACATGCCTGAAATGGA+TGG | 0.579300 | 1.4:+64570274 | MS.gene005062:CDS |
TTCCAAACAGTGATGAGCCA+TGG | 0.580133 | 1.4:+64568083 | MS.gene005062:CDS |
CCTTAATTCTAAGAAGGAGA+GGG | 0.581303 | 1.4:-64567362 | None:intergenic |
TCCTTCTTAGAATTAAGGTG+AGG | 0.582740 | 1.4:+64567367 | MS.gene005062:CDS |
CCTTCTTAGAATTAAGGTGA+GGG | 0.583317 | 1.4:+64567368 | MS.gene005062:CDS |
GCTTGAGCTTCAATATGTGC+CGG | 0.584592 | 1.4:+64568684 | MS.gene005062:CDS |
TCCTTATCTCCAACACATCA+GGG | 0.586059 | 1.4:-64567677 | None:intergenic |
AACTATCTCCATCTCTGGAG+CGG | 0.592322 | 1.4:-64567910 | None:intergenic |
TGAGGAGTTGGGTGCTGTCG+CGG | 0.592472 | 1.4:+64567770 | MS.gene005062:CDS |
AGTTAAGGATAGATGCATGC+TGG | 0.598062 | 1.4:+64570381 | MS.gene005062:CDS |
AAGGTTTCATCTCTAACTGA+AGG | 0.599231 | 1.4:-64568271 | None:intergenic |
TGGATATTACCAAACTCTCA+GGG | 0.599355 | 1.4:+64569986 | MS.gene005062:CDS |
GGAGATAAGGAAAACTAAAG+GGG | 0.605752 | 1.4:+64567689 | MS.gene005062:CDS |
ATGCTTTCATTGTTTCAAGA+GGG | 0.605913 | 1.4:+64568137 | MS.gene005062:CDS |
AAACTAGGAGTTGCGAGTAG+TGG | 0.606504 | 1.4:+64567735 | MS.gene005062:CDS |
CTAGGAGTTGCGAGTAGTGG+CGG | 0.609987 | 1.4:+64567738 | MS.gene005062:CDS |
AAGAAGCTACTCGAGAGGCT+GGG | 0.610653 | 1.4:+64570160 | MS.gene005062:CDS |
GGTGCTATAAGTGGCTCTGG+TGG | 0.610827 | 1.4:+64570223 | MS.gene005062:CDS |
TAGTAACAGCAGTTTCATCA+GGG | 0.611000 | 1.4:+64570188 | MS.gene005062:CDS |
ATAGCCTTCATAGTTCTATG+TGG | 0.611293 | 1.4:+64567207 | MS.gene005062:CDS |
AATCTTATGCAGATAATGCA+AGG | 0.616623 | 1.4:+64569956 | MS.gene005062:intron |
GAGGAATTTAGCAACAGTAA+GGG | 0.621503 | 1.4:-64567292 | None:intergenic |
GATGCTTTCATTGTTTCAAG+AGG | 0.621734 | 1.4:+64568136 | MS.gene005062:CDS |
GATGGAGATAGTTGAGGTGG+TGG | 0.622877 | 1.4:+64567920 | MS.gene005062:CDS |
TCACAACAGTGAATCTAAGG+AGG | 0.625084 | 1.4:+64568661 | MS.gene005062:CDS |
GATAGCGGATGAACTTAGAT+CGG | 0.629033 | 1.4:+64570447 | MS.gene005062:CDS |
GCAAGCGGCTTCCCTCAACA+TGG | 0.629945 | 1.4:-64568306 | None:intergenic |
CAAGCACTTAGCAATGCAAG+CGG | 0.631343 | 1.4:-64568321 | None:intergenic |
GGTGACACAATGTTGAAAGT+CGG | 0.632956 | 1.4:+64568188 | MS.gene005062:CDS |
CTAAGAAGGAGAGGGATCAA+CGG | 0.639905 | 1.4:-64567354 | None:intergenic |
TAACATGTATCAACCAACTC+CGG | 0.640709 | 1.4:-64567840 | None:intergenic |
CACAACAGTGAATCTAAGGA+GGG | 0.640846 | 1.4:+64568662 | MS.gene005062:CDS |
TCCAGAGATGGAGATAGTTG+AGG | 0.641469 | 1.4:+64567914 | MS.gene005062:CDS |
GGCCAATGCATTCAGTTGTG+GGG | 0.642247 | 1.4:+64568114 | MS.gene005062:CDS |
TGAGCTTCAATATGTGCCGG+AGG | 0.643404 | 1.4:+64568687 | MS.gene005062:CDS |
AGAGATGGAGATAGTTGAGG+TGG | 0.648766 | 1.4:+64567917 | MS.gene005062:CDS |
GGCAGAATGTGATGGAATTG+GGG | 0.651385 | 1.4:+64567403 | MS.gene005062:CDS |
TTATGTCTACATACTCAACT+GGG | 0.652246 | 1.4:-64568559 | None:intergenic |
CAGTGATGAGCCATGGACTG+AGG | 0.655532 | 1.4:+64568090 | MS.gene005062:CDS |
TGAGGTGGTGGCTGATCAGG+TGG | 0.658305 | 1.4:+64567932 | MS.gene005062:CDS |
CGAAACAACAGATTGGTAGG+AGG | 0.659295 | 1.4:+64568633 | MS.gene005062:CDS |
CATCTGCTAGCAAAATCTTG+AGG | 0.670396 | 1.4:-64570111 | None:intergenic |
CCACTGTAACTGTGATGATG+AGG | 0.670665 | 1.4:+64567038 | MS.gene005062:CDS |
TGATGAGCCATGGACTGAGG+AGG | 0.672113 | 1.4:+64568093 | MS.gene005062:CDS |
CCTCATCATCACAGTTACAG+TGG | 0.677470 | 1.4:-64567038 | None:intergenic |
CAGAGCCACTTATAGCACCC+AGG | 0.678501 | 1.4:-64570219 | None:intergenic |
CATCCGCTATCTGATGAAGG+AGG | 0.680590 | 1.4:-64570435 | None:intergenic |
CGACGCGTGAGAAAGGGCTA+CGG | 0.681594 | 1.4:-64567955 | None:intergenic |
AATCCTCCTTCATCAGATAG+CGG | 0.688493 | 1.4:+64570432 | MS.gene005062:CDS |
TGACAAAGAAGCTACTCGAG+AGG | 0.707649 | 1.4:+64570155 | MS.gene005062:CDS |
AGAAGGAGAGGGATCAACGG+CGG | 0.710786 | 1.4:-64567351 | None:intergenic |
CACACGACACAAGAGCAGTG+AGG | 0.767368 | 1.4:-64567311 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTAAATAATTACACA+GGG | - | chr1.4:64569891-64569910 | None:intergenic | 10.0% |
!! | TGTAATTATTTAATTAATCA+TGG | + | chr1.4:64569893-64569912 | MS.gene005062:intron | 10.0% |
!! | ATTATAAGTATAAAGAAGTA+AGG | - | chr1.4:64569756-64569775 | None:intergenic | 15.0% |
!! | GATTAATTAAATAATTACAC+AGG | - | chr1.4:64569892-64569911 | None:intergenic | 15.0% |
!! | TAGTGCTTTAATAAAATAAT+TGG | - | chr1.4:64569784-64569803 | None:intergenic | 15.0% |
!! | CAAGTAATTATGCATATTAT+TGG | + | chr1.4:64568428-64568447 | MS.gene005062:CDS | 20.0% |
!! | TGTGAATTTGAATAATCTTT+AGG | - | chr1.4:64570082-64570101 | None:intergenic | 20.0% |
!! | TTTCTTATGTTGAAAGATTT+AGG | - | chr1.4:64569275-64569294 | None:intergenic | 20.0% |
!!! | AAATTTGATTTTCAGATTAC+TGG | + | chr1.4:64568581-64568600 | MS.gene005062:CDS | 20.0% |
!!! | AATTTTACATCCTTAATGAA+TGG | - | chr1.4:64568943-64568962 | None:intergenic | 20.0% |
!!! | CTTTTATCTTAATAGTATCA+CGG | + | chr1.4:64569331-64569350 | MS.gene005062:intron | 20.0% |
!!! | GATATCTCTGAAAATAAAAA+GGG | + | chr1.4:64568245-64568264 | MS.gene005062:CDS | 20.0% |
!!! | TAATTTTGTTTTCCTCTTTT+AGG | + | chr1.4:64569421-64569440 | MS.gene005062:intron | 20.0% |
! | AATGCTTAAAGAATGATGTT+TGG | + | chr1.4:64568818-64568837 | MS.gene005062:intron | 25.0% |
! | AGATAATGCAAGGTAATATA+TGG | + | chr1.4:64569966-64569985 | MS.gene005062:intron | 25.0% |
! | ATGACAAAAAAATTGGTGTA+TGG | + | chr1.4:64568525-64568544 | MS.gene005062:CDS | 25.0% |
! | CACTGTCTATATTATATATG+TGG | + | chr1.4:64568729-64568748 | MS.gene005062:intron | 25.0% |
! | CAGATGATGATAGTTTAAAT+AGG | + | chr1.4:64570128-64570147 | MS.gene005062:CDS | 25.0% |
! | CGTGATACTATTAAGATAAA+AGG | - | chr1.4:64569333-64569352 | None:intergenic | 25.0% |
! | GATAAGGATGACAAAAAAAT+TGG | + | chr1.4:64568518-64568537 | MS.gene005062:CDS | 25.0% |
! | GATTATTCAAATTCACAGTT+TGG | + | chr1.4:64570085-64570104 | MS.gene005062:CDS | 25.0% |
! | TGAAGAAACAACAATTTGAA+AGG | - | chr1.4:64567183-64567202 | None:intergenic | 25.0% |
! | TTTCTTCAAACCATTCATTA+AGG | + | chr1.4:64568930-64568949 | MS.gene005062:intron | 25.0% |
! | TTTGACTCATGAATTGAAAT+CGG | + | chr1.4:64567611-64567630 | MS.gene005062:CDS | 25.0% |
!! | AAAGATTTAGGTTATAACAG+AGG | - | chr1.4:64569263-64569282 | None:intergenic | 25.0% |
!! | GGATATCTCTGAAAATAAAA+AGG | + | chr1.4:64568244-64568263 | MS.gene005062:CDS | 25.0% |
!! | TTCTGACTTTATTTACATTG+TGG | + | chr1.4:64569933-64569952 | MS.gene005062:intron | 25.0% |
!!! | ATGTTATGCTATACTAGTTT+TGG | + | chr1.4:64567857-64567876 | MS.gene005062:CDS | 25.0% |
!!! | TTTTGTAGTCTTGTTCATAT+TGG | - | chr1.4:64569588-64569607 | None:intergenic | 25.0% |
AAATTCGAAACATGAAGCAT+CGG | - | chr1.4:64567807-64567826 | None:intergenic | 30.0% | |
AATCTTATGCAGATAATGCA+AGG | + | chr1.4:64569956-64569975 | MS.gene005062:intron | 30.0% | |
ACAAAGTAAAGAAGCTCAAT+TGG | - | chr1.4:64567144-64567163 | None:intergenic | 30.0% | |
ACCTATTTCCATTGATGAAA+AGG | - | chr1.4:64569621-64569640 | None:intergenic | 30.0% | |
AGACATAACATAGACAATCA+AGG | - | chr1.4:64568765-64568784 | None:intergenic | 30.0% | |
AGGACTGAACAAAAGATTAT+TGG | + | chr1.4:64568167-64568186 | MS.gene005062:CDS | 30.0% | |
ATGCTTTCATTGTTTCAAGA+GGG | + | chr1.4:64568137-64568156 | MS.gene005062:CDS | 30.0% | |
ATGTTTCGAATTTCAAAGGA+GGG | + | chr1.4:64567814-64567833 | MS.gene005062:CDS | 30.0% | |
ATTTCAACGAAACAACAGAT+TGG | + | chr1.4:64568626-64568645 | MS.gene005062:CDS | 30.0% | |
CTTCATGTTTCGAATTTCAA+AGG | + | chr1.4:64567810-64567829 | MS.gene005062:CDS | 30.0% | |
GAGTTTAGTAAACGATGTAA+TGG | + | chr1.4:64568223-64568242 | MS.gene005062:CDS | 30.0% | |
TATTCAAATTCACAGTTTGG+AGG | + | chr1.4:64570088-64570107 | MS.gene005062:CDS | 30.0% | |
TCATGAATTGAAATCGGATT+CGG | + | chr1.4:64567617-64567636 | MS.gene005062:CDS | 30.0% | |
TGGAGATAAGGAAAACTAAA+GGG | + | chr1.4:64567688-64567707 | MS.gene005062:CDS | 30.0% | |
TGGGATTATGAAGAAACAAA+AGG | + | chr1.4:64567434-64567453 | MS.gene005062:CDS | 30.0% | |
TTATGTCTACATACTCAACT+GGG | - | chr1.4:64568562-64568581 | None:intergenic | 30.0% | |
TTGGAGATAAGGAAAACTAA+AGG | + | chr1.4:64567687-64567706 | MS.gene005062:CDS | 30.0% | |
TTGTGTGATGTAAACTCAAA+AGG | - | chr1.4:64569388-64569407 | None:intergenic | 30.0% | |
TTTATGTCTACATACTCAAC+TGG | - | chr1.4:64568563-64568582 | None:intergenic | 30.0% | |
! | AAGAAACTGATTCTACGAAT+CGG | + | chr1.4:64569101-64569120 | MS.gene005062:intron | 30.0% |
! | ATAAGAAAGCTTGTGCTTTT+TGG | + | chr1.4:64569646-64569665 | MS.gene005062:intron | 30.0% |
! | ATCTCTGAAAATAAAAAGGG+TGG | + | chr1.4:64568248-64568267 | MS.gene005062:CDS | 30.0% |
! | ATCTTTTGTGCCTTAAAATC+TGG | + | chr1.4:64569720-64569739 | MS.gene005062:intron | 30.0% |
! | ATTTGCATAATTGTGCTGTT+TGG | + | chr1.4:64567559-64567578 | MS.gene005062:CDS | 30.0% |
! | GAATAACAAGTTCTGATTTG+TGG | - | chr1.4:64569829-64569848 | None:intergenic | 30.0% |
! | GTGTCTTTTCTTGAATTGTA+AGG | + | chr1.4:64569540-64569559 | MS.gene005062:intron | 30.0% |
! | TCCTACTTTACCAGATTTTA+AGG | - | chr1.4:64569733-64569752 | None:intergenic | 30.0% |
! | TCCTTTTCATCAATGGAAAT+AGG | + | chr1.4:64569617-64569636 | MS.gene005062:intron | 30.0% |
! | TCTTTGCCTGAAAAAGTTTT+AGG | + | chr1.4:64568386-64568405 | MS.gene005062:CDS | 30.0% |
!! | ATCTGTTGTTTCGTTGAAAT+CGG | - | chr1.4:64568626-64568645 | None:intergenic | 30.0% |
!! | CTTCTTCTAAAGTTTCAGAT+AGG | + | chr1.4:64570028-64570047 | MS.gene005062:CDS | 30.0% |
!! | TAAGAAAGCTTGTGCTTTTT+GGG | + | chr1.4:64569647-64569666 | MS.gene005062:intron | 30.0% |
AAAAAAGAGTCTCGACACAA+CGG | - | chr1.4:64569163-64569182 | None:intergenic | 35.0% | |
AACATGGAATGTAGAAGGAA+AGG | - | chr1.4:64568293-64568312 | None:intergenic | 35.0% | |
AACATGTATCTTTCAAGCGA+TGG | - | chr1.4:64570055-64570074 | None:intergenic | 35.0% | |
AAGGTTTCATCTCTAACTGA+AGG | - | chr1.4:64568274-64568293 | None:intergenic | 35.0% | |
AATCAGTTTCTTGCAATTGC+AGG | - | chr1.4:64569093-64569112 | None:intergenic | 35.0% | |
ACTTCAAAACCATCCATTTC+AGG | - | chr1.4:64570286-64570305 | None:intergenic | 35.0% | |
AGAAACAAAAGGAAGCTAGT+TGG | + | chr1.4:64567445-64567464 | MS.gene005062:CDS | 35.0% | |
ATCAGTTTCTTGCAATTGCA+GGG | - | chr1.4:64569092-64569111 | None:intergenic | 35.0% | |
ATCTCTCTCCTATCATCATT+CGG | - | chr1.4:64567588-64567607 | None:intergenic | 35.0% | |
ATGGATATTACCAAACTCTC+AGG | + | chr1.4:64569985-64570004 | MS.gene005062:CDS | 35.0% | |
CATACCACATAGAACTATGA+AGG | - | chr1.4:64567214-64567233 | None:intergenic | 35.0% | |
CATGAATTGAAATCGGATTC+GGG | + | chr1.4:64567618-64567637 | MS.gene005062:CDS | 35.0% | |
CATGTTTCGAATTTCAAAGG+AGG | + | chr1.4:64567813-64567832 | MS.gene005062:CDS | 35.0% | |
CCTTCTTAGAATTAAGGTGA+GGG | + | chr1.4:64567368-64567387 | MS.gene005062:CDS | 35.0% | |
CTATGATCAAAGGCCAATTA+GGG | - | chr1.4:64570336-64570355 | None:intergenic | 35.0% | |
GAAAGCAAGAGTTGAAAAGA+AGG | - | chr1.4:64567273-64567292 | None:intergenic | 35.0% | |
GAATCACAACAGTGAATCTA+AGG | + | chr1.4:64568658-64568677 | MS.gene005062:CDS | 35.0% | |
GAGGAATTTAGCAACAGTAA+GGG | - | chr1.4:64567295-64567314 | None:intergenic | 35.0% | |
GATGCTTTCATTGTTTCAAG+AGG | + | chr1.4:64568136-64568155 | MS.gene005062:CDS | 35.0% | |
GCAATAACTGATCTCATATG+AGG | + | chr1.4:64569019-64569038 | MS.gene005062:intron | 35.0% | |
GCCTTAAAATCTGGTAAAGT+AGG | + | chr1.4:64569729-64569748 | MS.gene005062:intron | 35.0% | |
GCTATAAGAGCTATGATCAA+AGG | - | chr1.4:64570346-64570365 | None:intergenic | 35.0% | |
GCTCTTAGCTGAAATTAGTA+TGG | - | chr1.4:64569230-64569249 | None:intergenic | 35.0% | |
GGAGATAAGGAAAACTAAAG+GGG | + | chr1.4:64567689-64567708 | MS.gene005062:CDS | 35.0% | |
TAACATGTATCAACCAACTC+CGG | - | chr1.4:64567843-64567862 | None:intergenic | 35.0% | |
TAAGGAAAACTAAAGGGGTT+AGG | + | chr1.4:64567694-64567713 | MS.gene005062:CDS | 35.0% | |
TAATGCAGAAGAGCAAGTTA+AGG | + | chr1.4:64570366-64570385 | MS.gene005062:CDS | 35.0% | |
TACTCTTGTTGAGCTTTCTA+AGG | + | chr1.4:64567530-64567549 | MS.gene005062:CDS | 35.0% | |
TAGTAACAGCAGTTTCATCA+GGG | + | chr1.4:64570188-64570207 | MS.gene005062:CDS | 35.0% | |
TCCTTCTTAGAATTAAGGTG+AGG | + | chr1.4:64567367-64567386 | MS.gene005062:CDS | 35.0% | |
TGAGGAATTTAGCAACAGTA+AGG | - | chr1.4:64567296-64567315 | None:intergenic | 35.0% | |
TGGATATTACCAAACTCTCA+GGG | + | chr1.4:64569986-64570005 | MS.gene005062:CDS | 35.0% | |
TGTTTCAAGAGGGTAATATG+AGG | + | chr1.4:64568147-64568166 | MS.gene005062:CDS | 35.0% | |
! | ACCTTAATTCTAAGAAGGAG+AGG | - | chr1.4:64567366-64567385 | None:intergenic | 35.0% |
! | ATAGCCTTCATAGTTCTATG+TGG | + | chr1.4:64567207-64567226 | MS.gene005062:CDS | 35.0% |
! | CCTTAATTCTAAGAAGGAGA+GGG | - | chr1.4:64567365-64567384 | None:intergenic | 35.0% |
! | GATTTAGGTTATAACAGAGG+AGG | - | chr1.4:64569260-64569279 | None:intergenic | 35.0% |
! | TCTCACTTCCTTTTCATCAA+TGG | + | chr1.4:64569610-64569629 | MS.gene005062:intron | 35.0% |
!! | AAGAAAGCTTGTGCTTTTTG+GGG | + | chr1.4:64569648-64569667 | MS.gene005062:intron | 35.0% |
!! | TCATCGCCTAAAACTTTTTC+AGG | - | chr1.4:64568395-64568414 | None:intergenic | 35.0% |
!!! | ATACTAGTTTTGGTTCTTCC+AGG | + | chr1.4:64567867-64567886 | MS.gene005062:CDS | 35.0% |
!!! | TGAAATGGATGGTTTTGAAG+TGG | + | chr1.4:64570285-64570304 | MS.gene005062:CDS | 35.0% |
AAAAGGATCCTTCCAACATG+GGG | - | chr1.4:64569371-64569390 | None:intergenic | 40.0% | |
AAAGCAGATTCTGACATGAC+AGG | + | chr1.4:64569465-64569484 | MS.gene005062:intron | 40.0% | |
AAGTGCTTGTGTGTGTATCA+AGG | + | chr1.4:64568335-64568354 | MS.gene005062:CDS | 40.0% | |
AATCCTCCTTCATCAGATAG+CGG | + | chr1.4:64570432-64570451 | MS.gene005062:CDS | 40.0% | |
ACACAGAAACTGCATGATTG+TGG | + | chr1.4:64569518-64569537 | MS.gene005062:intron | 40.0% | |
ACCAATAACTGATCTGTTGC+AGG | + | chr1.4:64569058-64569077 | MS.gene005062:intron | 40.0% | |
AGACATTCACATGCCTGAAA+TGG | + | chr1.4:64570270-64570289 | MS.gene005062:CDS | 40.0% | |
AGCATACACACAATCCTTGT+TGG | + | chr1.4:64567072-64567091 | MS.gene005062:CDS | 40.0% | |
AGTGCTTGTGTGTGTATCAA+GGG | + | chr1.4:64568336-64568355 | MS.gene005062:CDS | 40.0% | |
AGTTAAGGATAGATGCATGC+TGG | + | chr1.4:64570381-64570400 | MS.gene005062:CDS | 40.0% | |
ATTACCAAACTCTCAGGGTT+TGG | + | chr1.4:64569991-64570010 | MS.gene005062:CDS | 40.0% | |
ATTCACATGCCTGAAATGGA+TGG | + | chr1.4:64570274-64570293 | MS.gene005062:CDS | 40.0% | |
CAAAAGGATCCTTCCAACAT+GGG | - | chr1.4:64569372-64569391 | None:intergenic | 40.0% | |
CAACGAAACAACAGATTGGT+AGG | + | chr1.4:64568630-64568649 | MS.gene005062:CDS | 40.0% | |
CACAACAGTGAATCTAAGGA+GGG | + | chr1.4:64568662-64568681 | MS.gene005062:CDS | 40.0% | |
CATCTGCTAGCAAAATCTTG+AGG | - | chr1.4:64570114-64570133 | None:intergenic | 40.0% | |
CCCTCTCCTTCTTAGAATTA+AGG | + | chr1.4:64567362-64567381 | MS.gene005062:CDS | 40.0% | |
CCTTCTACATTCCATGTTGA+GGG | + | chr1.4:64568295-64568314 | MS.gene005062:CDS | 40.0% | |
CTAGTAACAGCAGTTTCATC+AGG | + | chr1.4:64570187-64570206 | MS.gene005062:CDS | 40.0% | |
GCAACAGATCAGTTATTGGT+CGG | - | chr1.4:64569058-64569077 | None:intergenic | 40.0% | |
GCAACTCCTAGTTTAGATTC+AGG | - | chr1.4:64567729-64567748 | None:intergenic | 40.0% | |
GCAAGGATCAGGAAATTCAA+TGG | + | chr1.4:64570310-64570329 | MS.gene005062:CDS | 40.0% | |
GCATGTTAGGATGCTTACTA+GGG | + | chr1.4:64567467-64567486 | MS.gene005062:CDS | 40.0% | |
GCTATGATCAAAGGCCAATT+AGG | - | chr1.4:64570337-64570356 | None:intergenic | 40.0% | |
GGAAATTCAATGGCCCTAAT+TGG | + | chr1.4:64570320-64570339 | MS.gene005062:CDS | 40.0% | |
GGATGCTTACTAGGGAAATT+AGG | + | chr1.4:64567475-64567494 | MS.gene005062:CDS | 40.0% | |
GGCATCATTAGAGAAACATG+AGG | + | chr1.4:64569486-64569505 | MS.gene005062:intron | 40.0% | |
GGTGACACAATGTTGAAAGT+CGG | + | chr1.4:64568188-64568207 | MS.gene005062:CDS | 40.0% | |
GTTGACCTGCATCTTCATTT+GGG | + | chr1.4:64568856-64568875 | MS.gene005062:intron | 40.0% | |
TCAAAAGGATCCTTCCAACA+TGG | - | chr1.4:64569373-64569392 | None:intergenic | 40.0% | |
TCACAACAGTGAATCTAAGG+AGG | + | chr1.4:64568661-64568680 | MS.gene005062:CDS | 40.0% | |
TCCTTATCTCCAACACATCA+GGG | - | chr1.4:64567680-64567699 | None:intergenic | 40.0% | |
TCCTTCTACATTCCATGTTG+AGG | + | chr1.4:64568294-64568313 | MS.gene005062:CDS | 40.0% | |
TGTTGACCTGCATCTTCATT+TGG | + | chr1.4:64568855-64568874 | MS.gene005062:intron | 40.0% | |
TTCCTTATCTCCAACACATC+AGG | - | chr1.4:64567681-64567700 | None:intergenic | 40.0% | |
TTGAGGCCTGAATCTAAACT+AGG | + | chr1.4:64567720-64567739 | MS.gene005062:CDS | 40.0% | |
TTGATCCCAAATGAAGATGC+AGG | - | chr1.4:64568864-64568883 | None:intergenic | 40.0% | |
TTGTGTGTGTATCAAGGGTT+TGG | + | chr1.4:64568341-64568360 | MS.gene005062:CDS | 40.0% | |
TTTCTTGAGGCAGAATGTGA+TGG | + | chr1.4:64567395-64567414 | MS.gene005062:CDS | 40.0% | |
TTTGGATGCCGAATGATGAT+AGG | + | chr1.4:64567577-64567596 | MS.gene005062:CDS | 40.0% | |
! | AGGCAGAATGTGATGGAATT+GGG | + | chr1.4:64567402-64567421 | MS.gene005062:CDS | 40.0% |
! | CCCTCACCTTAATTCTAAGA+AGG | - | chr1.4:64567371-64567390 | None:intergenic | 40.0% |
! | CGGGTTTTTGTTACAAGTGA+GGG | + | chr1.4:64568491-64568510 | MS.gene005062:CDS | 40.0% |
! | CTAAAGGGGTTAGGATTTTG+AGG | + | chr1.4:64567703-64567722 | MS.gene005062:CDS | 40.0% |
! | GTTTTTGTTACAAGTGAGGG+TGG | + | chr1.4:64568494-64568513 | MS.gene005062:CDS | 40.0% |
! | TATTTTTCCCCCATGTTGGA+AGG | + | chr1.4:64569360-64569379 | MS.gene005062:intron | 40.0% |
! | TCGGGTTTTTGTTACAAGTG+AGG | + | chr1.4:64568490-64568509 | MS.gene005062:CDS | 40.0% |
! | TTTGAGACTGTTGCAATGCT+CGG | - | chr1.4:64568028-64568047 | None:intergenic | 40.0% |
!! | CTTGTTATTCCCTTGCCTAT+TGG | + | chr1.4:64569839-64569858 | MS.gene005062:intron | 40.0% |
!! | GATAGCGGATGAACTTAGAT+CGG | + | chr1.4:64570447-64570466 | MS.gene005062:CDS | 40.0% |
!! | TGTTGAGCTTTCTAAGGCTT+TGG | + | chr1.4:64567536-64567555 | MS.gene005062:CDS | 40.0% |
!!! | AAGCTATTTTTCCCCCATGT+TGG | + | chr1.4:64569356-64569375 | MS.gene005062:intron | 40.0% |
!!! | AAGTTTTAGGCGATGAAGCA+AGG | + | chr1.4:64568399-64568418 | MS.gene005062:CDS | 40.0% |
!!! | AATGGATGGTTTTGAAGTGG+CGG | + | chr1.4:64570288-64570307 | MS.gene005062:CDS | 40.0% |
!!! | ACCGAGGGAATCTTGTTTTT+CGG | + | chr1.4:64568471-64568490 | MS.gene005062:CDS | 40.0% |
!!! | AGTTTTGGTTCTTCCAGGTT+CGG | + | chr1.4:64567872-64567891 | MS.gene005062:CDS | 40.0% |
!!! | CACTGACTTTTTGACCAACA+AGG | - | chr1.4:64567089-64567108 | None:intergenic | 40.0% |
AAACTAGGAGTTGCGAGTAG+TGG | + | chr1.4:64567735-64567754 | MS.gene005062:CDS | 45.0% | |
AAAGGATCCTTCCAACATGG+GGG | - | chr1.4:64569370-64569389 | None:intergenic | 45.0% | |
AACACATCAGGGTCAATCAC+AGG | - | chr1.4:64567669-64567688 | None:intergenic | 45.0% | |
ACCCTGATGTGTTGGAGATA+AGG | + | chr1.4:64567676-64567695 | MS.gene005062:CDS | 45.0% | |
ACCTCAACTATCTCCATCTC+TGG | - | chr1.4:64567918-64567937 | None:intergenic | 45.0% | |
AGAGATGGAGATAGTTGAGG+TGG | + | chr1.4:64567917-64567936 | MS.gene005062:CDS | 45.0% | |
AGGAAGCTAGTTGGCATGTT+AGG | + | chr1.4:64567454-64567473 | MS.gene005062:CDS | 45.0% | |
AGGCCAATGCATTCAGTTGT+GGG | + | chr1.4:64568113-64568132 | MS.gene005062:CDS | 45.0% | |
ATCCCCACAACTGAATGCAT+TGG | - | chr1.4:64568119-64568138 | None:intergenic | 45.0% | |
ATGGAATTGGGGCAAGAAGT+TGG | + | chr1.4:64567414-64567433 | MS.gene005062:CDS | 45.0% | |
CAAGCACTTAGCAATGCAAG+CGG | - | chr1.4:64568324-64568343 | None:intergenic | 45.0% | |
CCAGGATATGCTCCTAAAAG+AGG | - | chr1.4:64569436-64569455 | None:intergenic | 45.0% | |
CCCGAAAAACAAGATTCCCT+CGG | - | chr1.4:64568475-64568494 | None:intergenic | 45.0% | |
CCCTCAACATGGAATGTAGA+AGG | - | chr1.4:64568298-64568317 | None:intergenic | 45.0% | |
CCTCATCATCACAGTTACAG+TGG | - | chr1.4:64567041-64567060 | None:intergenic | 45.0% | |
CGAAACAACAGATTGGTAGG+AGG | + | chr1.4:64568633-64568652 | MS.gene005062:CDS | 45.0% | |
CTAAGAAGGAGAGGGATCAA+CGG | - | chr1.4:64567357-64567376 | None:intergenic | 45.0% | |
CTCATATGAGGTGCATGTGA+GGG | + | chr1.4:64569031-64569050 | MS.gene005062:intron | 45.0% | |
CTGGAATGAATGGTGTGATC+CGG | + | chr1.4:64570404-64570423 | MS.gene005062:CDS | 45.0% | |
GCCTGCAACAGATCAGTTAT+TGG | - | chr1.4:64569062-64569081 | None:intergenic | 45.0% | |
GCTATCTGATGAAGGAGGAT+TGG | - | chr1.4:64570433-64570452 | None:intergenic | 45.0% | |
GCTTGAGCTTCAATATGTGC+CGG | + | chr1.4:64568684-64568703 | MS.gene005062:CDS | 45.0% | |
GGCATGTTAGGATGCTTACT+AGG | + | chr1.4:64567466-64567485 | MS.gene005062:CDS | 45.0% | |
GTCTCAAAAGAACGCGATGA+TGG | + | chr1.4:64568040-64568059 | MS.gene005062:CDS | 45.0% | |
GTTCATCCGCTATCTGATGA+AGG | - | chr1.4:64570441-64570460 | None:intergenic | 45.0% | |
TACAAGTGAGGGTGGTGATA+AGG | + | chr1.4:64568502-64568521 | MS.gene005062:CDS | 45.0% | |
TCCAGAGATGGAGATAGTTG+AGG | + | chr1.4:64567914-64567933 | MS.gene005062:CDS | 45.0% | |
TCCTTGACCTTCTAGTCAGA+TGG | + | chr1.4:64569125-64569144 | MS.gene005062:intron | 45.0% | |
TCTCATATGAGGTGCATGTG+AGG | + | chr1.4:64569030-64569049 | MS.gene005062:intron | 45.0% | |
TGACAAAGAAGCTACTCGAG+AGG | + | chr1.4:64570155-64570174 | MS.gene005062:CDS | 45.0% | |
TGGAATTGGGGCAAGAAGTT+GGG | + | chr1.4:64567415-64567434 | MS.gene005062:CDS | 45.0% | |
TGTGATTGACCCTGATGTGT+TGG | + | chr1.4:64567668-64567687 | MS.gene005062:CDS | 45.0% | |
TTCCAAACAGTGATGAGCCA+TGG | + | chr1.4:64568083-64568102 | MS.gene005062:CDS | 45.0% | |
! | AACTATCTCCATCTCTGGAG+CGG | - | chr1.4:64567913-64567932 | None:intergenic | 45.0% |
! | AGGTGAGGGAGATTTTCTTG+AGG | + | chr1.4:64567382-64567401 | MS.gene005062:CDS | 45.0% |
! | CCACTGTAACTGTGATGATG+AGG | + | chr1.4:64567038-64567057 | MS.gene005062:CDS | 45.0% |
! | GAGGCAGAATGTGATGGAAT+TGG | + | chr1.4:64567401-64567420 | MS.gene005062:CDS | 45.0% |
! | GGCAGAATGTGATGGAATTG+GGG | + | chr1.4:64567403-64567422 | MS.gene005062:CDS | 45.0% |
! | GTTTTTCACCTGCACGAAGT+AGG | - | chr1.4:64570474-64570493 | None:intergenic | 45.0% |
! | TTTGGAATGACTTCCTAGCC+TGG | - | chr1.4:64568070-64568089 | None:intergenic | 45.0% |
!! | CCTCTTTTAGGAGCATATCC+TGG | + | chr1.4:64569433-64569452 | MS.gene005062:intron | 45.0% |
!! | GATGAAGGAGGATTGGTTTC+CGG | - | chr1.4:64570426-64570445 | None:intergenic | 45.0% |
!!! | AGCTTGTGCTTTTTGGGGTT+AGG | + | chr1.4:64569653-64569672 | MS.gene005062:intron | 45.0% |
!!! | ATCTGCTTTTTCGACTAGCC+AGG | - | chr1.4:64569454-64569473 | None:intergenic | 45.0% |
!!! | CCGAGGGAATCTTGTTTTTC+GGG | + | chr1.4:64568472-64568491 | MS.gene005062:CDS | 45.0% |
!!! | TGTGCTTTTTGGGGTTAGGT+GGG | + | chr1.4:64569657-64569676 | MS.gene005062:intron | 45.0% |
!!! | TTGTGCTTTTTGGGGTTAGG+TGG | + | chr1.4:64569656-64569675 | MS.gene005062:intron | 45.0% |
AAAGAAGCTACTCGAGAGGC+TGG | + | chr1.4:64570159-64570178 | MS.gene005062:CDS | 50.0% | |
AAGAAGCTACTCGAGAGGCT+GGG | + | chr1.4:64570160-64570179 | MS.gene005062:CDS | 50.0% | |
AAGAGTCTCGACACAACGGT+TGG | - | chr1.4:64569159-64569178 | None:intergenic | 50.0% | |
AAGGATAGATGCATGCTGGC+TGG | + | chr1.4:64570385-64570404 | MS.gene005062:CDS | 50.0% | |
ACACAGGGCCTATTTCGTAC+AGG | - | chr1.4:64569876-64569895 | None:intergenic | 50.0% | |
ACTCCTGGACCAATAGGCAA+GGG | - | chr1.4:64569851-64569870 | None:intergenic | 50.0% | |
AGGAGTGGCCTGTACGAAAT+AGG | + | chr1.4:64569865-64569884 | MS.gene005062:intron | 50.0% | |
ATTCCCTTGCCTATTGGTCC+AGG | + | chr1.4:64569845-64569864 | MS.gene005062:intron | 50.0% | |
CATCCGCTATCTGATGAAGG+AGG | - | chr1.4:64570438-64570457 | None:intergenic | 50.0% | |
CTTCAATATGTGCCGGAGGT+TGG | + | chr1.4:64568691-64568710 | MS.gene005062:CDS | 50.0% | |
GAATTTCAAAGGAGGGACGC+CGG | + | chr1.4:64567821-64567840 | MS.gene005062:CDS | 50.0% | |
GAGGCCAATGCATTCAGTTG+TGG | + | chr1.4:64568112-64568131 | MS.gene005062:CDS | 50.0% | |
GATGGAGATAGTTGAGGTGG+TGG | + | chr1.4:64567920-64567939 | MS.gene005062:CDS | 50.0% | |
GCCATCTGACTAGAAGGTCA+AGG | - | chr1.4:64569129-64569148 | None:intergenic | 50.0% | |
GGCCAATGCATTCAGTTGTG+GGG | + | chr1.4:64568114-64568133 | MS.gene005062:CDS | 50.0% | |
GTCCATGGCTCATCACTGTT+TGG | - | chr1.4:64568088-64568107 | None:intergenic | 50.0% | |
GTGGTTGCCATCTGACTAGA+AGG | - | chr1.4:64569135-64569154 | None:intergenic | 50.0% | |
TATTTCGTACAGGCCACTCC+TGG | - | chr1.4:64569866-64569885 | None:intergenic | 50.0% | |
TCATCAGGGTTTGAGTGCCT+GGG | + | chr1.4:64570202-64570221 | MS.gene005062:CDS | 50.0% | |
TCTTCCAGGTTCGGACTCTA+GGG | + | chr1.4:64567881-64567900 | MS.gene005062:CDS | 50.0% | |
TGAGCTTCAATATGTGCCGG+AGG | + | chr1.4:64568687-64568706 | MS.gene005062:CDS | 50.0% | |
TGCACCAAACCCTGAGAGTT+TGG | - | chr1.4:64569998-64570017 | None:intergenic | 50.0% | |
TGCTCTTGTGTCGTGTGCAA+CGG | + | chr1.4:64567317-64567336 | MS.gene005062:CDS | 50.0% | |
TTCATCAGGGTTTGAGTGCC+TGG | + | chr1.4:64570201-64570220 | MS.gene005062:CDS | 50.0% | |
TTCTTCCAGGTTCGGACTCT+AGG | + | chr1.4:64567880-64567899 | MS.gene005062:CDS | 50.0% | |
! | TGCATGCTGGCTGGAATGAA+TGG | + | chr1.4:64570394-64570413 | MS.gene005062:CDS | 50.0% |
!! | AACTCTCAGGGTTTGGTGCA+AGG | + | chr1.4:64569998-64570017 | MS.gene005062:CDS | 50.0% |
!!! | ATGGTTTTGAAGTGGCGGCA+AGG | + | chr1.4:64570293-64570312 | MS.gene005062:CDS | 50.0% |
AGAAGGAGAGGGATCAACGG+CGG | - | chr1.4:64567354-64567373 | None:intergenic | 55.0% | |
AGATCGGTCCTACTTCGTGC+AGG | + | chr1.4:64570463-64570482 | MS.gene005062:CDS | 55.0% | |
CAAACCCTAGAGTCCGAACC+TGG | - | chr1.4:64567888-64567907 | None:intergenic | 55.0% | |
CACACGACACAAGAGCAGTG+AGG | - | chr1.4:64567314-64567333 | None:intergenic | 55.0% | |
CACCTACCTGTACCAACCTC+CGG | - | chr1.4:64568706-64568725 | None:intergenic | 55.0% | |
CACTCCTGGACCAATAGGCA+AGG | - | chr1.4:64569852-64569871 | None:intergenic | 55.0% | |
CAGAGCCACTTATAGCACCC+AGG | - | chr1.4:64570222-64570241 | None:intergenic | 55.0% | |
CTAGGAGTTGCGAGTAGTGG+CGG | + | chr1.4:64567738-64567757 | MS.gene005062:CDS | 55.0% | |
CTTGCCTATTGGTCCAGGAG+TGG | + | chr1.4:64569850-64569869 | MS.gene005062:intron | 55.0% | |
GAATGACTTCCTAGCCTGGC+TGG | - | chr1.4:64568066-64568085 | None:intergenic | 55.0% | |
GAGAACCGACGCGTGAGAAA+GGG | - | chr1.4:64567964-64567983 | None:intergenic | 55.0% | |
TCTCGACACAACGGTTGGAG+TGG | - | chr1.4:64569154-64569173 | None:intergenic | 55.0% | |
TGTTGAACACGCGTGACCGA+GGG | + | chr1.4:64568456-64568475 | MS.gene005062:CDS | 55.0% | |
TTGAAGTGGCGGCAAGGATC+AGG | + | chr1.4:64570299-64570318 | MS.gene005062:CDS | 55.0% | |
TTGTTGAACACGCGTGACCG+AGG | + | chr1.4:64568455-64568474 | MS.gene005062:CDS | 55.0% | |
! | AGTTGAGGTGGTGGCTGATC+AGG | + | chr1.4:64567929-64567948 | MS.gene005062:CDS | 55.0% |
! | CAGTGATGAGCCATGGACTG+AGG | + | chr1.4:64568090-64568109 | MS.gene005062:CDS | 55.0% |
! | CTGGGTGCTATAAGTGGCTC+TGG | + | chr1.4:64570220-64570239 | MS.gene005062:CDS | 55.0% |
! | GAGTGCCTGGGTGCTATAAG+TGG | + | chr1.4:64570214-64570233 | MS.gene005062:CDS | 55.0% |
! | TGATGAGCCATGGACTGAGG+AGG | + | chr1.4:64568093-64568112 | MS.gene005062:CDS | 55.0% |
!! | CAGGTTCGGACTCTAGGGTT+TGG | + | chr1.4:64567886-64567905 | MS.gene005062:CDS | 55.0% |
!! | GGTGCTATAAGTGGCTCTGG+TGG | + | chr1.4:64570223-64570242 | MS.gene005062:CDS | 55.0% |
!! | TATGTGCCGGAGGTTGGTAC+AGG | + | chr1.4:64568697-64568716 | MS.gene005062:CDS | 55.0% |
AGTTGCGAGTAGTGGCGGTG+GGG | + | chr1.4:64567743-64567762 | MS.gene005062:CDS | 60.0% | |
CAGGCCACTCCTGGACCAAT+AGG | - | chr1.4:64569857-64569876 | None:intergenic | 60.0% | |
CGACGCGTGAGAAAGGGCTA+CGG | - | chr1.4:64567958-64567977 | None:intergenic | 60.0% | |
CGAGAACCGACGCGTGAGAA+AGG | - | chr1.4:64567965-64567984 | None:intergenic | 60.0% | |
CGTAGCCCTTTCTCACGCGT+CGG | + | chr1.4:64567956-64567975 | MS.gene005062:CDS | 60.0% | |
GAGTTGCGAGTAGTGGCGGT+GGG | + | chr1.4:64567742-64567761 | MS.gene005062:CDS | 60.0% | |
GCAAGCGGCTTCCCTCAACA+TGG | - | chr1.4:64568309-64568328 | None:intergenic | 60.0% | |
GGTTTGGACCGCTCCAGAGA+TGG | + | chr1.4:64567902-64567921 | MS.gene005062:CDS | 60.0% | |
! | GCATTGGCCTCCTCAGTCCA+TGG | - | chr1.4:64568103-64568122 | None:intergenic | 60.0% |
! | TGAGGAGTTGGGTGCTGTCG+CGG | + | chr1.4:64567770-64567789 | MS.gene005062:CDS | 60.0% |
! | TGAGGTGGTGGCTGATCAGG+TGG | + | chr1.4:64567932-64567951 | MS.gene005062:CDS | 60.0% |
!! | GGTGGGGGTACTGAGGAGTT+GGG | + | chr1.4:64567759-64567778 | MS.gene005062:CDS | 60.0% |
!! | TGCCGGAGGTTGGTACAGGT+AGG | + | chr1.4:64568701-64568720 | MS.gene005062:intron | 60.0% |
CAAAGGAGGGACGCCGGAGT+TGG | + | chr1.4:64567827-64567846 | MS.gene005062:CDS | 65.0% | |
GGAGTTGCGAGTAGTGGCGG+TGG | + | chr1.4:64567741-64567760 | MS.gene005062:CDS | 65.0% | |
GTTGCGAGTAGTGGCGGTGG+GGG | + | chr1.4:64567744-64567763 | MS.gene005062:CDS | 65.0% | |
! | CGATGATGGCCAGCCAGGCT+AGG | + | chr1.4:64568054-64568073 | MS.gene005062:CDS | 65.0% |
! | GAACGCGATGATGGCCAGCC+AGG | + | chr1.4:64568049-64568068 | MS.gene005062:CDS | 65.0% |
!! | CGGTGGGGGTACTGAGGAGT+TGG | + | chr1.4:64567758-64567777 | MS.gene005062:CDS | 65.0% |
!! | TAGTGGCGGTGGGGGTACTG+AGG | + | chr1.4:64567752-64567771 | MS.gene005062:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 64566955 | 64570498 | 64566955 | ID=MS.gene005062 |
chr1.4 | mRNA | 64566955 | 64570498 | 64566955 | ID=MS.gene005062.t1;Parent=MS.gene005062 |
chr1.4 | exon | 64566955 | 64568718 | 64566955 | ID=MS.gene005062.t1.exon1;Parent=MS.gene005062.t1 |
chr1.4 | CDS | 64566955 | 64568718 | 64566955 | ID=cds.MS.gene005062.t1;Parent=MS.gene005062.t1 |
chr1.4 | exon | 64569968 | 64570498 | 64569968 | ID=MS.gene005062.t1.exon2;Parent=MS.gene005062.t1 |
chr1.4 | CDS | 64569968 | 64570498 | 64569968 | ID=cds.MS.gene005062.t1;Parent=MS.gene005062.t1 |
Gene Sequence |
Protein sequence |