Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65517.t1 | XP_024631074.1 | 91.9 | 755 | 36 | 1 | 1 | 730 | 1 | 755 | 0.00E+00 | 1278.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65517.t1 | Q0WPQ2 | 52.8 | 767 | 298 | 14 | 1 | 718 | 1 | 752 | 1.4e-192 | 674.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65517.t1 | A0A072VSP2 | 91.9 | 755 | 36 | 1 | 1 | 730 | 1 | 755 | 0.0e+00 | 1278.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene65517.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene65517 | -0.804392 | 2.21E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene65517 | -0.800273 | 1.56E-48 | -1.69E-46 |
| MS.gene052825 | MS.gene65517 | -0.807955 | 3.93E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene65517 | -0.812564 | 3.98E-51 | -1.69E-46 |
| MS.gene053421 | MS.gene65517 | 0.912748 | 1.37E-83 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058783 | MS.gene65517 | PPI |
| MS.gene005060 | MS.gene65517 | PPI |
| MS.gene65517 | MS.gene024512 | PPI |
| MS.gene050576 | MS.gene65517 | PPI |
| MS.gene74904 | MS.gene65517 | PPI |
| MS.gene07610 | MS.gene65517 | PPI |
| MS.gene005062 | MS.gene65517 | PPI |
| MS.gene65517 | MS.gene025978 | PPI |
| MS.gene65517 | MS.gene74902 | PPI |
| MS.gene65517 | MS.gene22870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65517.t1 | MTR_1g044210 | 91.921 | 755 | 36 | 1 | 1 | 730 | 1 | 755 | 0.0 | 1358 |
| MS.gene65517.t1 | MTR_1g073840 | 70.699 | 744 | 188 | 6 | 1 | 718 | 1 | 740 | 0.0 | 1046 |
| MS.gene65517.t1 | MTR_7g116330 | 52.697 | 723 | 304 | 8 | 25 | 718 | 31 | 744 | 0.0 | 765 |
| MS.gene65517.t1 | MTR_1g079790 | 51.515 | 726 | 311 | 8 | 25 | 718 | 25 | 741 | 0.0 | 725 |
| MS.gene65517.t1 | MTR_1g079790 | 54.021 | 572 | 252 | 6 | 25 | 589 | 25 | 592 | 0.0 | 605 |
| MS.gene65517.t1 | MTR_4g031150 | 36.842 | 722 | 417 | 14 | 28 | 718 | 54 | 767 | 1.53e-143 | 439 |
| MS.gene65517.t1 | MTR_7g109150 | 39.410 | 576 | 322 | 10 | 28 | 589 | 5 | 567 | 5.92e-116 | 363 |
| MS.gene65517.t1 | MTR_4g134880 | 67.857 | 56 | 17 | 1 | 664 | 718 | 1 | 56 | 5.03e-17 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene65517.t1 | AT3G23150 | 52.638 | 777 | 292 | 15 | 1 | 722 | 1 | 756 | 0.0 | 737 |
| MS.gene65517.t1 | AT3G04580 | 50.411 | 730 | 324 | 10 | 23 | 718 | 22 | 747 | 0.0 | 695 |
| MS.gene65517.t1 | AT3G04580 | 50.411 | 730 | 324 | 10 | 23 | 718 | 22 | 747 | 0.0 | 695 |
| MS.gene65517.t1 | AT3G23150 | 56.106 | 606 | 226 | 11 | 1 | 583 | 1 | 589 | 0.0 | 624 |
| MS.gene65517.t1 | AT1G04310 | 47.410 | 637 | 296 | 10 | 1 | 613 | 1 | 622 | 0.0 | 531 |
| MS.gene65517.t1 | AT1G04310 | 47.410 | 637 | 296 | 10 | 1 | 613 | 1 | 622 | 0.0 | 531 |
| MS.gene65517.t1 | AT1G66340 | 36.602 | 724 | 414 | 15 | 28 | 718 | 4 | 715 | 1.33e-142 | 436 |
| MS.gene65517.t1 | AT2G40940 | 41.416 | 466 | 267 | 5 | 42 | 503 | 17 | 480 | 7.99e-111 | 349 |
| MS.gene65517.t1 | AT1G27320 | 23.450 | 371 | 238 | 11 | 324 | 660 | 410 | 768 | 8.50e-11 | 66.2 |
Find 174 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATGCATATTGGGTTTAA+TGG | 0.188176 | 1.4:-28615156 | MS.gene65517:CDS |
| GTTAAACTGTCGGAAACTTT+AGG | 0.198346 | 1.4:-28617279 | MS.gene65517:CDS |
| CCCCTTTGAAGTTATTCTTT+TGG | 0.208877 | 1.4:-28615301 | MS.gene65517:intron |
| ATGGCTTTATGCAAGGGTTT+TGG | 0.236524 | 1.4:-28616487 | MS.gene65517:CDS |
| TTGTTTAATAGCTGGACTTA+TGG | 0.240419 | 1.4:-28617573 | MS.gene65517:CDS |
| ATGAAATAAAGAAGCTCAAT+AGG | 0.260762 | 1.4:+28617672 | None:intergenic |
| GCAACTTATGAGAGAGAAAT+TGG | 0.272205 | 1.4:-28616842 | MS.gene65517:CDS |
| TAACAATACATCCTAGTTTC+TGG | 0.278898 | 1.4:+28615380 | None:intergenic |
| TCTGAACTCTCCCCTGGTTC+GGG | 0.291012 | 1.4:+28615493 | None:intergenic |
| TTAAACTGTCGGAAACTTTA+GGG | 0.291922 | 1.4:-28617278 | MS.gene65517:CDS |
| ATTGCTTTCATTGTACTTTG+TGG | 0.294523 | 1.4:-28617606 | MS.gene65517:CDS |
| CTTAACTTGCCTGATTTAGA+TGG | 0.294640 | 1.4:-28615276 | MS.gene65517:CDS |
| GATTCTTGTGTTTCAAGTTT+TGG | 0.305051 | 1.4:-28616347 | MS.gene65517:CDS |
| GTTACTTCAGGGAGGCTTGC+AGG | 0.306598 | 1.4:-28616196 | MS.gene65517:CDS |
| CTCTGAACTCTCCCCTGGTT+CGG | 0.307952 | 1.4:+28615492 | None:intergenic |
| GCCTATCGCTGTTGCTTTAA+CGG | 0.315525 | 1.4:-28615208 | MS.gene65517:CDS |
| CCTTTGGAGATGAAATGTTT+TGG | 0.321337 | 1.4:-28616553 | MS.gene65517:CDS |
| CTGTTACGCGATACTTGTTT+TGG | 0.339387 | 1.4:-28616977 | MS.gene65517:CDS |
| GTGCAAACATTCCATTCAAA+TGG | 0.340458 | 1.4:-28617644 | MS.gene65517:CDS |
| CAAAACAAGTATCGCGTAAC+AGG | 0.352897 | 1.4:+28616978 | None:intergenic |
| AGCTTGCATCGCCAAGTCTA+TGG | 0.355095 | 1.4:-28616506 | MS.gene65517:CDS |
| AGGCCAATGCATTCAGTTAT+GGG | 0.362686 | 1.4:-28616721 | MS.gene65517:CDS |
| TCAGAGACCTCAGTTACTTC+AGG | 0.363567 | 1.4:-28616208 | MS.gene65517:CDS |
| TCTTTGCCTAACTATATTAT+CGG | 0.368544 | 1.4:-28616442 | MS.gene65517:CDS |
| ATGTATAAAGCAACAGCATC+TGG | 0.373228 | 1.4:-28617852 | MS.gene65517:CDS |
| TATTAAAGTTGTTGCTGATC+AGG | 0.379034 | 1.4:-28616905 | MS.gene65517:CDS |
| GATTTAAGGTTGAGGTTGAT+AGG | 0.383654 | 1.4:-28616465 | MS.gene65517:CDS |
| TGAGGAAAGCCTCTAGCATT+TGG | 0.394008 | 1.4:+28615571 | None:intergenic |
| AACTGATGACCCTTGCTCTT+CGG | 0.397404 | 1.4:-28615549 | MS.gene65517:CDS |
| TGGAGGTGGAAGATTTCCTT+TGG | 0.397483 | 1.4:-28616569 | MS.gene65517:CDS |
| GGAAGTTCAAAAGCCGTAAC+TGG | 0.402042 | 1.4:-28615230 | MS.gene65517:CDS |
| CATCTAAATCAGGCAAGTTA+AGG | 0.412834 | 1.4:+28615277 | None:intergenic |
| AAGGCCAATGCATTCAGTTA+TGG | 0.414233 | 1.4:-28616722 | MS.gene65517:CDS |
| CTTGAAAGTCCTCACTGCAT+TGG | 0.415305 | 1.4:-28617514 | MS.gene65517:CDS |
| AAGCGAAAGGCGAGGGAGCT+TGG | 0.417170 | 1.4:-28617414 | MS.gene65517:CDS |
| CAGAGGTCTGCAAGTCTTGT+TGG | 0.425682 | 1.4:-28615446 | MS.gene65517:CDS |
| GATCAAAGTGATGAGGGTTA+TGG | 0.428611 | 1.4:+28617476 | None:intergenic |
| ACTTCAAATCCATCTAAATC+AGG | 0.429557 | 1.4:+28615267 | None:intergenic |
| TGACACATTTGTTTAATAGC+TGG | 0.431512 | 1.4:-28617581 | MS.gene65517:CDS |
| GAAGGATGTGTACGAGTGAC+CGG | 0.443598 | 1.4:-28616174 | MS.gene65517:CDS |
| AAGCTCAGAAGAAGAATTGC+GGG | 0.444376 | 1.4:-28615184 | MS.gene65517:CDS |
| CCCTATGCTTCTTAAAGTAA+AGG | 0.446192 | 1.4:-28617454 | MS.gene65517:CDS |
| CAGATACACACAACAAGAAC+AGG | 0.447453 | 1.4:+28617817 | None:intergenic |
| GGCATTCGGATCGCAGCAAC+CGG | 0.448019 | 1.4:+28617051 | None:intergenic |
| CCTTGCAACAGAATGGCTTT+CGG | 0.448445 | 1.4:+28615127 | None:intergenic |
| ATGCTATGGACAATTCAGAT+AGG | 0.455663 | 1.4:-28616597 | MS.gene65517:CDS |
| CCCTTGACTCTTACAACATC+CGG | 0.458403 | 1.4:+28617150 | None:intergenic |
| TTCTATACCGATCACTGATC+CGG | 0.461024 | 1.4:-28617169 | MS.gene65517:CDS |
| TGAAATAAAGAAGCTCAATA+GGG | 0.466212 | 1.4:+28617673 | None:intergenic |
| CTGCTTGCTGCTGCGAGTAG+TGG | 0.466733 | 1.4:-28617093 | MS.gene65517:CDS |
| TTGAAGTTACCGCAAGGATC+CGG | 0.468641 | 1.4:-28615251 | MS.gene65517:CDS |
| TGTGTATCTGCAACTGTCAA+TGG | 0.471199 | 1.4:-28617804 | MS.gene65517:CDS |
| AACCTCACTCATGAATTGAA+TGG | 0.471461 | 1.4:-28617207 | MS.gene65517:CDS |
| GCGAAATCGAGCATTGCAAC+AGG | 0.472193 | 1.4:-28616815 | MS.gene65517:CDS |
| CAACACTAAGCATTGGCATT+CGG | 0.473530 | 1.4:+28617037 | None:intergenic |
| TACGAGTGACCGGGCATTCG+AGG | 0.475000 | 1.4:-28616164 | MS.gene65517:CDS |
| TCAGATAGGGACGGTGGAGG+TGG | 0.475127 | 1.4:-28616583 | MS.gene65517:CDS |
| TTTCAGAAAGTCATGAGTAA+TGG | 0.476424 | 1.4:-28616751 | MS.gene65517:CDS |
| CTAGTGAAGAGGCTAGATCT+TGG | 0.479339 | 1.4:-28616948 | MS.gene65517:CDS |
| GAAAGTCATGAGTAATGGAA+TGG | 0.480686 | 1.4:-28616746 | MS.gene65517:CDS |
| TGCAAACATTCCATTCAAAT+GGG | 0.481437 | 1.4:-28617643 | MS.gene65517:CDS |
| CTTAGTGTTGGCGATTTCAA+AGG | 0.483799 | 1.4:-28617024 | MS.gene65517:CDS |
| TGTAAGAGTCAAGGGAGATA+AGG | 0.484906 | 1.4:-28617142 | MS.gene65517:CDS |
| GAGCATTGCAACAGGAGAAA+AGG | 0.488985 | 1.4:-28616807 | MS.gene65517:CDS |
| TCTATTAATATCGTCGTTGT+CGG | 0.489246 | 1.4:+28615423 | None:intergenic |
| CAGAAGTTTCTCCAGAAACT+AGG | 0.490213 | 1.4:-28615391 | MS.gene65517:CDS |
| TCAAACTTTCCTCGAATGCC+CGG | 0.492186 | 1.4:+28616155 | None:intergenic |
| ACCTCACTCATGAATTGAAT+GGG | 0.492396 | 1.4:-28617206 | MS.gene65517:CDS |
| CAACAGCGATAGGCCAGTTA+CGG | 0.493707 | 1.4:+28615217 | None:intergenic |
| TTAGTGTTGGCGATTTCAAA+GGG | 0.496178 | 1.4:-28617023 | MS.gene65517:CDS |
| GCGGTAACCATCCCCGAACC+AGG | 0.502417 | 1.4:-28615505 | MS.gene65517:CDS |
| ATAATGAAACAGAATGAAGC+TGG | 0.506215 | 1.4:-28617375 | MS.gene65517:CDS |
| ACTTGATAGATGGTAACAAT+GGG | 0.506406 | 1.4:-28616375 | MS.gene65517:CDS |
| TAACAGGCCTCCGTTACCTC+AGG | 0.507753 | 1.4:+28616994 | None:intergenic |
| AGTGGAGTTTCTGTTGATGC+AGG | 0.512394 | 1.4:-28617075 | MS.gene65517:CDS |
| CAAGTCTATGGCTTTATGCA+AGG | 0.514591 | 1.4:-28616494 | MS.gene65517:CDS |
| CCTTTACTTTAAGAAGCATA+GGG | 0.517469 | 1.4:+28617454 | None:intergenic |
| CAGAGACCTCAGTTACTTCA+GGG | 0.520849 | 1.4:-28616207 | MS.gene65517:CDS |
| TACTACCTTGGTTAAACTGT+CGG | 0.524792 | 1.4:-28617289 | MS.gene65517:CDS |
| CAAGATCTAGCCTCTTCACT+AGG | 0.525819 | 1.4:+28616949 | None:intergenic |
| GGAGAAAAGGAACGCTATGA+TGG | 0.526316 | 1.4:-28616794 | MS.gene65517:CDS |
| ACCTTTACTTTAAGAAGCAT+AGG | 0.527347 | 1.4:+28617453 | None:intergenic |
| CCGAAAGCCATTCTGTTGCA+AGG | 0.528294 | 1.4:-28615127 | MS.gene65517:CDS |
| GGCGAATCCTTGCAACAGAA+TGG | 0.528894 | 1.4:+28615120 | None:intergenic |
| AACTTGATAGATGGTAACAA+TGG | 0.531282 | 1.4:-28616376 | MS.gene65517:CDS |
| AAAGTCATGAGTAATGGAAT+GGG | 0.532334 | 1.4:-28616745 | MS.gene65517:CDS |
| AGTTTCTGTTGATGCAGGAC+CGG | 0.541642 | 1.4:-28617070 | MS.gene65517:CDS |
| AAGTCTATGGCTTTATGCAA+GGG | 0.542582 | 1.4:-28616493 | MS.gene65517:CDS |
| GATGCCTAATGTTGATAAAA+CGG | 0.545342 | 1.4:-28617235 | MS.gene65517:CDS |
| ACTCTCCCCTGGTTCGGGGA+TGG | 0.547088 | 1.4:+28615498 | None:intergenic |
| TTGAACATGGATATGCAACT+TGG | 0.548877 | 1.4:-28616300 | MS.gene65517:CDS |
| GAAACTTATTGTGGATTCGA+TGG | 0.549832 | 1.4:-28616656 | MS.gene65517:CDS |
| GATCAAAATTCCTTGTTCAG+AGG | 0.550379 | 1.4:-28615463 | MS.gene65517:CDS |
| GATGACTCTGAACTCTCCCC+TGG | 0.550748 | 1.4:+28615487 | None:intergenic |
| TCGTCACCGATAATATAGTT+AGG | 0.551741 | 1.4:+28616436 | None:intergenic |
| TGTTGCTGATCAGGTAGCCG+TGG | 0.554230 | 1.4:-28616896 | MS.gene65517:CDS |
| AAATCGCCAACACTAAGCAT+TGG | 0.554872 | 1.4:+28617030 | None:intergenic |
| GAACTTGATGAATGATGCTA+TGG | 0.555490 | 1.4:-28616611 | MS.gene65517:CDS |
| TCCCATTCAATTCATGAGTG+AGG | 0.557270 | 1.4:+28617205 | None:intergenic |
| TTGCGATTCTTCTAGAATTG+CGG | 0.559822 | 1.4:+28616861 | None:intergenic |
| AGAGTTCTTGCTGAAGCGAA+AGG | 0.561096 | 1.4:-28617427 | MS.gene65517:CDS |
| CAGCATGATTTGAAATGTGT+GGG | 0.561684 | 1.4:+28617548 | None:intergenic |
| CCGGATGTTGTAAGAGTCAA+GGG | 0.561701 | 1.4:-28617150 | MS.gene65517:CDS |
| TGCTATGGACAATTCAGATA+GGG | 0.564858 | 1.4:-28616596 | MS.gene65517:CDS |
| TTATTGTGGATTCGATGGTA+AGG | 0.567940 | 1.4:-28616651 | MS.gene65517:CDS |
| ATTCTGTTGCAAGGATTCGC+CGG | 0.568420 | 1.4:-28615118 | MS.gene65517:CDS |
| GCCGTTAAAGCAACAGCGAT+AGG | 0.568669 | 1.4:+28615207 | None:intergenic |
| CCAAAACATTTCATCTCCAA+AGG | 0.569295 | 1.4:+28616553 | None:intergenic |
| GAATGAACAGAAACTTATTG+TGG | 0.569510 | 1.4:-28616665 | MS.gene65517:CDS |
| ATATTATCGGTGACGAGAAG+AGG | 0.570583 | 1.4:-28616429 | MS.gene65517:CDS |
| ATGGTTAGGAACTTGATAGA+TGG | 0.571670 | 1.4:-28616385 | MS.gene65517:CDS |
| ATTCTAGAATGGCAGAAAGT+CGG | 0.574057 | 1.4:-28617729 | MS.gene65517:CDS |
| CGAATGCCAATGCTTAGTGT+TGG | 0.574855 | 1.4:-28617036 | MS.gene65517:CDS |
| CATATGCAAGAAGATAATCC+AGG | 0.578098 | 1.4:-28616125 | MS.gene65517:intron |
| CTTGCATAAAGCCATAGACT+TGG | 0.578350 | 1.4:+28616495 | None:intergenic |
| TCCGGATGTTGTAAGAGTCA+AGG | 0.578653 | 1.4:-28617151 | MS.gene65517:CDS |
| TTTGGTACTTCCTAGTGAAG+AGG | 0.580067 | 1.4:-28616959 | MS.gene65517:CDS |
| GAACGCTATGATGGCGAGTG+AGG | 0.581349 | 1.4:-28616785 | MS.gene65517:CDS |
| TGTTATTGGCAGTCAATGAA+AGG | 0.581485 | 1.4:-28615610 | MS.gene65517:intron |
| CTTGCTGAAGCGAAAGGCGA+GGG | 0.583282 | 1.4:-28617421 | MS.gene65517:CDS |
| CTTCAGGGAGGCTTGCAGGA+AGG | 0.584384 | 1.4:-28616192 | MS.gene65517:CDS |
| ACATCACCGTTAGACGAGCT+TGG | 0.587602 | 1.4:+28616274 | None:intergenic |
| CGGAATCTGGAAGTCGAGGA+AGG | 0.587888 | 1.4:-28616324 | MS.gene65517:CDS |
| AATTCAGATAGGGACGGTGG+AGG | 0.588433 | 1.4:-28616586 | MS.gene65517:CDS |
| CATAGGGATCAAAGTGATGA+GGG | 0.588741 | 1.4:+28617470 | None:intergenic |
| AGGGAGCTTGGAATTGAGTA+CGG | 0.594494 | 1.4:-28617402 | MS.gene65517:CDS |
| AATCCCATAACTGAATGCAT+TGG | 0.595120 | 1.4:+28616718 | None:intergenic |
| AAGGATGTGTACGAGTGACC+GGG | 0.595446 | 1.4:-28616173 | MS.gene65517:CDS |
| GACTTGCAGACCTCTGAACA+AGG | 0.597590 | 1.4:+28615453 | None:intergenic |
| TATTATCGGTGACGAGAAGA+GGG | 0.598459 | 1.4:-28616428 | MS.gene65517:CDS |
| CAAGCTCAGAAGAAGAATTG+CGG | 0.599403 | 1.4:-28615185 | MS.gene65517:CDS |
| TTTGAACTTCCGGATCCTTG+CGG | 0.601307 | 1.4:+28615242 | None:intergenic |
| CAATTGAAAAGATTCTAGAA+TGG | 0.604554 | 1.4:-28617740 | MS.gene65517:CDS |
| CGGTAACCATCCCCGAACCA+GGG | 0.604626 | 1.4:-28615504 | MS.gene65517:CDS |
| GTAGTTGAAACCGAAGAGCA+AGG | 0.606603 | 1.4:+28615539 | None:intergenic |
| AGAGCAAGGGTCATCAGTTG+AGG | 0.607034 | 1.4:+28615553 | None:intergenic |
| ACAACATCCGGATCAGTGAT+CGG | 0.610257 | 1.4:+28617162 | None:intergenic |
| AGTGTTGGCGATTTCAAAGG+GGG | 0.610884 | 1.4:-28617021 | MS.gene65517:CDS |
| GTTGCTGATCAGGTAGCCGT+GGG | 0.610984 | 1.4:-28616895 | MS.gene65517:CDS |
| TTGGCGGAATCTGGAAGTCG+AGG | 0.612913 | 1.4:-28616328 | MS.gene65517:CDS |
| CTGAACTCTCCCCTGGTTCG+GGG | 0.615088 | 1.4:+28615494 | None:intergenic |
| GCATAGGGATCAAAGTGATG+AGG | 0.615167 | 1.4:+28617469 | None:intergenic |
| TCTTGCTGAAGCGAAAGGCG+AGG | 0.616326 | 1.4:-28617422 | MS.gene65517:CDS |
| TAGTTGAAACCGAAGAGCAA+GGG | 0.619553 | 1.4:+28615540 | None:intergenic |
| GTGCATGTTAGATTTGACAT+AGG | 0.621016 | 1.4:-28616253 | MS.gene65517:CDS |
| GGGGACGCCTGAGGTAACGG+AGG | 0.625733 | 1.4:-28617001 | MS.gene65517:CDS |
| AGTCGAGGAAGGATTGAACA+TGG | 0.630620 | 1.4:-28616313 | MS.gene65517:CDS |
| TGGAGACCAAGCTCGTCTAA+CGG | 0.635163 | 1.4:-28616280 | MS.gene65517:CDS |
| TCACTCATGAATTGAATGGG+AGG | 0.638853 | 1.4:-28617203 | MS.gene65517:CDS |
| ACTTATGAGAGAGAAATTGG+AGG | 0.641195 | 1.4:-28616839 | MS.gene65517:CDS |
| TCAGCATGATTTGAAATGTG+TGG | 0.647150 | 1.4:+28617547 | None:intergenic |
| GGTAACCATCCCCGAACCAG+GGG | 0.647398 | 1.4:-28615503 | MS.gene65517:CDS |
| GATTCGATGGTAAGGACAAG+CGG | 0.650665 | 1.4:-28616643 | MS.gene65517:CDS |
| GACAATTCAGATAGGGACGG+TGG | 0.651579 | 1.4:-28616589 | MS.gene65517:CDS |
| GTGACGATGACACGAGCTGG+TGG | 0.654426 | 1.4:-28617764 | MS.gene65517:CDS |
| ATGGATTTGAAGTTACCGCA+AGG | 0.658657 | 1.4:-28615257 | MS.gene65517:CDS |
| TCATGAGTAATGGAATGGGA+AGG | 0.660080 | 1.4:-28616741 | MS.gene65517:CDS |
| GATGGCGAGTGAGGCTAGAG+CGG | 0.664178 | 1.4:-28616776 | MS.gene65517:CDS |
| TGTTCAGTACCAAATGCTAG+AGG | 0.667794 | 1.4:-28615580 | MS.gene65517:CDS |
| GGTTGCAGAACTGTGCTGTG+TGG | 0.669623 | 1.4:-28617257 | MS.gene65517:CDS |
| AGTTTCCGACAGTTTAACCA+AGG | 0.671343 | 1.4:+28617284 | None:intergenic |
| TTGATAGATGGTAACAATGG+GGG | 0.671786 | 1.4:-28616373 | MS.gene65517:CDS |
| AAGCCTCCCTGAAGTAACTG+AGG | 0.673026 | 1.4:+28616201 | None:intergenic |
| ATGGACAATTCAGATAGGGA+CGG | 0.674602 | 1.4:-28616592 | MS.gene65517:CDS |
| ACTGTGACGATGACACGAGC+TGG | 0.677647 | 1.4:-28617767 | MS.gene65517:CDS |
| TCAACTACGCTGTTCTACCG+CGG | 0.678877 | 1.4:-28615524 | MS.gene65517:CDS |
| GTGTTGGCGATTTCAAAGGG+GGG | 0.681741 | 1.4:-28617020 | MS.gene65517:CDS |
| TAGTGTTGGCGATTTCAAAG+GGG | 0.690768 | 1.4:-28617022 | MS.gene65517:CDS |
| TGCGGCATGAGAAAGACCCA+CGG | 0.697860 | 1.4:+28616879 | None:intergenic |
| TGGTTCGGGGATGGTTACCG+CGG | 0.700590 | 1.4:+28615507 | None:intergenic |
| AGACCTCAGTTACTTCAGGG+AGG | 0.704562 | 1.4:-28616204 | MS.gene65517:CDS |
| CTTGATAGATGGTAACAATG+GGG | 0.715045 | 1.4:-28616374 | MS.gene65517:CDS |
| CACATGAAACCAATGCAGTG+AGG | 0.730416 | 1.4:+28617505 | None:intergenic |
| AGCATGATTTGAAATGTGTG+GGG | 0.747887 | 1.4:+28617549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAATTTGAAAAATA+TGG | + | chr1.4:28617211-28617230 | None:intergenic | 10.0% |
| !! | TTATTGACATTATTCATTAA+AGG | - | chr1.4:28616909-28616928 | MS.gene65517:CDS | 15.0% |
| !! | ATGTCAATAAAGATGAAAAT+CGG | + | chr1.4:28616899-28616918 | None:intergenic | 20.0% |
| !!! | AAAATTGTGATAGAACATTT+TGG | - | chr1.4:28616957-28616976 | MS.gene65517:CDS | 20.0% |
| ! | ATGAAATAAAGAAGCTCAAT+AGG | + | chr1.4:28615281-28615300 | None:intergenic | 25.0% |
| ! | ATTCAATTCATAATGTCTCT+AGG | - | chr1.4:28617175-28617194 | MS.gene65517:CDS | 25.0% |
| ! | CCAATAACATACAAAATCAA+TGG | + | chr1.4:28617329-28617348 | None:intergenic | 25.0% |
| ! | GTAGTTAGAACTATCAAATT+AGG | - | chr1.4:28617272-28617291 | MS.gene65517:CDS | 25.0% |
| ! | TCCAAAAGAATAACTTCAAA+GGG | + | chr1.4:28617653-28617672 | None:intergenic | 25.0% |
| ! | TCTTTGCCTAACTATATTAT+CGG | - | chr1.4:28616508-28616527 | MS.gene65517:CDS | 25.0% |
| ! | TGAAATAAAGAAGCTCAATA+GGG | + | chr1.4:28615280-28615299 | None:intergenic | 25.0% |
| ! | TTCAATTCATAATGTCTCTA+GGG | - | chr1.4:28617176-28617195 | MS.gene65517:CDS | 25.0% |
| !! | AGAACTTGAAAATTTTGAAC+TGG | + | chr1.4:28616986-28617005 | None:intergenic | 25.0% |
| !! | CAATTGAAAAGATTCTAGAA+TGG | - | chr1.4:28615210-28615229 | MS.gene65517:CDS | 25.0% |
| !!! | CCATTGATTTTGTATGTTAT+TGG | - | chr1.4:28617326-28617345 | MS.gene65517:CDS | 25.0% |
| AACTTGATAGATGGTAACAA+TGG | - | chr1.4:28616574-28616593 | MS.gene65517:CDS | 30.0% | |
| AATCATTCATTGGAATTTCG+TGG | + | chr1.4:28617237-28617256 | None:intergenic | 30.0% | |
| ACTTCAAATCCATCTAAATC+AGG | + | chr1.4:28617686-28617705 | None:intergenic | 30.0% | |
| ACTTGATAGATGGTAACAAT+GGG | - | chr1.4:28616575-28616594 | MS.gene65517:CDS | 30.0% | |
| ATAATGAAACAGAATGAAGC+TGG | - | chr1.4:28615575-28615594 | MS.gene65517:CDS | 30.0% | |
| ATTGCTTTCATTGTACTTTG+TGG | - | chr1.4:28615344-28615363 | MS.gene65517:intron | 30.0% | |
| CAAATGTTATATAGCTTACC+TGG | + | chr1.4:28616846-28616865 | None:intergenic | 30.0% | |
| CCAAAAGAATAACTTCAAAG+GGG | + | chr1.4:28617652-28617671 | None:intergenic | 30.0% | |
| GAATGAACAGAAACTTATTG+TGG | - | chr1.4:28616285-28616304 | MS.gene65517:CDS | 30.0% | |
| GGGAAAAATGTATGCATATT+GGG | - | chr1.4:28617786-28617805 | MS.gene65517:CDS | 30.0% | |
| GTCCAAAAGAATAACTTCAA+AGG | + | chr1.4:28617654-28617673 | None:intergenic | 30.0% | |
| TAACAATACATCCTAGTTTC+TGG | + | chr1.4:28617573-28617592 | None:intergenic | 30.0% | |
| TAGCACACTTAATCATTCAT+TGG | + | chr1.4:28617247-28617266 | None:intergenic | 30.0% | |
| TATTAAAGTTGTTGCTGATC+AGG | - | chr1.4:28616045-28616064 | MS.gene65517:intron | 30.0% | |
| TCAATTCATAATGTCTCTAG+GGG | - | chr1.4:28617177-28617196 | MS.gene65517:CDS | 30.0% | |
| TCTATTAATATCGTCGTTGT+CGG | + | chr1.4:28617530-28617549 | None:intergenic | 30.0% | |
| TGACACATTTGTTTAATAGC+TGG | - | chr1.4:28615369-28615388 | MS.gene65517:intron | 30.0% | |
| TGCAAACATTCCATTCAAAT+GGG | - | chr1.4:28615307-28615326 | MS.gene65517:intron | 30.0% | |
| TGTATGCATATTGGGTTTAA+TGG | - | chr1.4:28617794-28617813 | MS.gene65517:CDS | 30.0% | |
| TTAAACTGTCGGAAACTTTA+GGG | - | chr1.4:28615672-28615691 | MS.gene65517:intron | 30.0% | |
| TTGTTTAATAGCTGGACTTA+TGG | - | chr1.4:28615377-28615396 | MS.gene65517:intron | 30.0% | |
| TTTCAGAAAGTCATGAGTAA+TGG | - | chr1.4:28616199-28616218 | MS.gene65517:CDS | 30.0% | |
| ! | AAAGTCATGAGTAATGGAAT+GGG | - | chr1.4:28616205-28616224 | MS.gene65517:CDS | 30.0% |
| ! | ACCTTTACTTTAAGAAGCAT+AGG | + | chr1.4:28615500-28615519 | None:intergenic | 30.0% |
| ! | CCTTTACTTTAAGAAGCATA+GGG | + | chr1.4:28615499-28615518 | None:intergenic | 30.0% |
| ! | GATGCCTAATGTTGATAAAA+CGG | - | chr1.4:28615715-28615734 | MS.gene65517:intron | 30.0% |
| ! | TGAGATTTTGTATACTACCT+TGG | - | chr1.4:28615649-28615668 | MS.gene65517:intron | 30.0% |
| !! | TGAAAAAGTACCCATTTGAA+TGG | + | chr1.4:28615320-28615339 | None:intergenic | 30.0% |
| !!! | GATTCTTGTGTTTCAAGTTT+TGG | - | chr1.4:28616603-28616622 | MS.gene65517:CDS | 30.0% |
| AACCTCACTCATGAATTGAA+TGG | - | chr1.4:28615743-28615762 | MS.gene65517:intron | 35.0% | |
| AATCCCATAACTGAATGCAT+TGG | + | chr1.4:28616235-28616254 | None:intergenic | 35.0% | |
| ACCTCACTCATGAATTGAAT+GGG | - | chr1.4:28615744-28615763 | MS.gene65517:intron | 35.0% | |
| ACTTATGAGAGAGAAATTGG+AGG | - | chr1.4:28616111-28616130 | MS.gene65517:intron | 35.0% | |
| ATGCTATGGACAATTCAGAT+AGG | - | chr1.4:28616353-28616372 | MS.gene65517:CDS | 35.0% | |
| ATGGTTAGGAACTTGATAGA+TGG | - | chr1.4:28616565-28616584 | MS.gene65517:CDS | 35.0% | |
| ATGTATAAAGCAACAGCATC+TGG | - | chr1.4:28615098-28615117 | MS.gene65517:CDS | 35.0% | |
| CAATTCATAATGTCTCTAGG+GGG | - | chr1.4:28617178-28617197 | MS.gene65517:CDS | 35.0% | |
| CATATGCAAGAAGATAATCC+AGG | - | chr1.4:28616825-28616844 | MS.gene65517:CDS | 35.0% | |
| CATCTAAATCAGGCAAGTTA+AGG | + | chr1.4:28617676-28617695 | None:intergenic | 35.0% | |
| CCAAAACATTTCATCTCCAA+AGG | + | chr1.4:28616400-28616419 | None:intergenic | 35.0% | |
| CCCTATGCTTCTTAAAGTAA+AGG | - | chr1.4:28615496-28615515 | MS.gene65517:CDS | 35.0% | |
| CGGGAAAAATGTATGCATAT+TGG | - | chr1.4:28617785-28617804 | MS.gene65517:CDS | 35.0% | |
| CTTGATAGATGGTAACAATG+GGG | - | chr1.4:28616576-28616595 | MS.gene65517:CDS | 35.0% | |
| GAAACTTATTGTGGATTCGA+TGG | - | chr1.4:28616294-28616313 | MS.gene65517:CDS | 35.0% | |
| GAACTTGATGAATGATGCTA+TGG | - | chr1.4:28616339-28616358 | MS.gene65517:CDS | 35.0% | |
| GATCAAAATTCCTTGTTCAG+AGG | - | chr1.4:28617487-28617506 | MS.gene65517:CDS | 35.0% | |
| GCAACTTATGAGAGAGAAAT+TGG | - | chr1.4:28616108-28616127 | MS.gene65517:intron | 35.0% | |
| GCACGTATTGAATCAAGTAT+CGG | + | chr1.4:28617094-28617113 | None:intergenic | 35.0% | |
| GTGCAAACATTCCATTCAAA+TGG | - | chr1.4:28615306-28615325 | MS.gene65517:intron | 35.0% | |
| GTGCATGTTAGATTTGACAT+AGG | - | chr1.4:28616697-28616716 | MS.gene65517:CDS | 35.0% | |
| GTTAAACTGTCGGAAACTTT+AGG | - | chr1.4:28615671-28615690 | MS.gene65517:intron | 35.0% | |
| TACTACCTTGGTTAAACTGT+CGG | - | chr1.4:28615661-28615680 | MS.gene65517:intron | 35.0% | |
| TCGTCACCGATAATATAGTT+AGG | + | chr1.4:28616517-28616536 | None:intergenic | 35.0% | |
| TGCTATGGACAATTCAGATA+GGG | - | chr1.4:28616354-28616373 | MS.gene65517:CDS | 35.0% | |
| TGTTATTGGCAGTCAATGAA+AGG | - | chr1.4:28617340-28617359 | MS.gene65517:CDS | 35.0% | |
| TTATTGTGGATTCGATGGTA+AGG | - | chr1.4:28616299-28616318 | MS.gene65517:CDS | 35.0% | |
| TTCGAATGCCTTAATCTTGT+TGG | - | chr1.4:28617611-28617630 | MS.gene65517:CDS | 35.0% | |
| TTGAACATGGATATGCAACT+TGG | - | chr1.4:28616650-28616669 | MS.gene65517:CDS | 35.0% | |
| TTGATAGATGGTAACAATGG+GGG | - | chr1.4:28616577-28616596 | MS.gene65517:CDS | 35.0% | |
| TTGTTACATCTGTTCTCTTC+CGG | - | chr1.4:28617587-28617606 | MS.gene65517:CDS | 35.0% | |
| ! | AAGATTAAGGCATTCGAATC+CGG | + | chr1.4:28617609-28617628 | None:intergenic | 35.0% |
| ! | AGCATGATTTGAAATGTGTG+GGG | + | chr1.4:28615404-28615423 | None:intergenic | 35.0% |
| ! | CAGCATGATTTGAAATGTGT+GGG | + | chr1.4:28615405-28615424 | None:intergenic | 35.0% |
| ! | GAAAGTCATGAGTAATGGAA+TGG | - | chr1.4:28616204-28616223 | MS.gene65517:CDS | 35.0% |
| ! | GATTTAAGGTTGAGGTTGAT+AGG | - | chr1.4:28616485-28616504 | MS.gene65517:CDS | 35.0% |
| ! | TCAGCATGATTTGAAATGTG+TGG | + | chr1.4:28615406-28615425 | None:intergenic | 35.0% |
| !! | AAGTCTATGGCTTTATGCAA+GGG | - | chr1.4:28616457-28616476 | MS.gene65517:CDS | 35.0% |
| !! | ATCGCCGTTTTATCAACATT+AGG | + | chr1.4:28615722-28615741 | None:intergenic | 35.0% |
| !! | ATTCTAGAATGGCAGAAAGT+CGG | - | chr1.4:28615221-28615240 | MS.gene65517:CDS | 35.0% |
| !! | CCTTTGGAGATGAAATGTTT+TGG | - | chr1.4:28616397-28616416 | MS.gene65517:CDS | 35.0% |
| !! | CTTAACTTGCCTGATTTAGA+TGG | - | chr1.4:28617674-28617693 | MS.gene65517:CDS | 35.0% |
| !! | TTAGTGTTGGCGATTTCAAA+GGG | - | chr1.4:28615927-28615946 | MS.gene65517:intron | 35.0% |
| !! | TTGCGATTCTTCTAGAATTG+CGG | + | chr1.4:28616092-28616111 | None:intergenic | 35.0% |
| !!! | ATGCAAGGGTTTTGGATTTA+AGG | - | chr1.4:28616471-28616490 | MS.gene65517:CDS | 35.0% |
| !!! | CCCCTTTGAAGTTATTCTTT+TGG | - | chr1.4:28617649-28617668 | MS.gene65517:CDS | 35.0% |
| !!! | TCTTGTGTTTCAAGTTTTGG+CGG | - | chr1.4:28616606-28616625 | MS.gene65517:CDS | 35.0% |
| !!! | TTTTCAGGTGATTTTGCACA+TGG | - | chr1.4:28616546-28616565 | MS.gene65517:CDS | 35.0% |
| AAATCGCCAACACTAAGCAT+TGG | + | chr1.4:28615923-28615942 | None:intergenic | 40.0% | |
| AAGCTCAGAAGAAGAATTGC+GGG | - | chr1.4:28617766-28617785 | MS.gene65517:CDS | 40.0% | |
| AAGGCCAATGCATTCAGTTA+TGG | - | chr1.4:28616228-28616247 | MS.gene65517:CDS | 40.0% | |
| AGGCCAATGCATTCAGTTAT+GGG | - | chr1.4:28616229-28616248 | MS.gene65517:CDS | 40.0% | |
| AGTTTCCGACAGTTTAACCA+AGG | + | chr1.4:28615669-28615688 | None:intergenic | 40.0% | |
| ATATTATCGGTGACGAGAAG+AGG | - | chr1.4:28616521-28616540 | MS.gene65517:CDS | 40.0% | |
| ATGGACAATTCAGATAGGGA+CGG | - | chr1.4:28616358-28616377 | MS.gene65517:CDS | 40.0% | |
| CAAGCTCAGAAGAAGAATTG+CGG | - | chr1.4:28617765-28617784 | MS.gene65517:CDS | 40.0% | |
| CAGAAGTTTCTCCAGAAACT+AGG | - | chr1.4:28617559-28617578 | MS.gene65517:CDS | 40.0% | |
| CAGATACACACAACAAGAAC+AGG | + | chr1.4:28615136-28615155 | None:intergenic | 40.0% | |
| CATAGGGATCAAAGTGATGA+GGG | + | chr1.4:28615483-28615502 | None:intergenic | 40.0% | |
| CTTGCATAAAGCCATAGACT+TGG | + | chr1.4:28616458-28616477 | None:intergenic | 40.0% | |
| GATCAAAGTGATGAGGGTTA+TGG | + | chr1.4:28615477-28615496 | None:intergenic | 40.0% | |
| TAGTTGAAACCGAAGAGCAA+GGG | + | chr1.4:28617413-28617432 | None:intergenic | 40.0% | |
| TATTATCGGTGACGAGAAGA+GGG | - | chr1.4:28616522-28616541 | MS.gene65517:CDS | 40.0% | |
| TCACTCATGAATTGAATGGG+AGG | - | chr1.4:28615747-28615766 | MS.gene65517:intron | 40.0% | |
| TCCCATTCAATTCATGAGTG+AGG | + | chr1.4:28615748-28615767 | None:intergenic | 40.0% | |
| TGTAAGAGTCAAGGGAGATA+AGG | - | chr1.4:28615808-28615827 | MS.gene65517:intron | 40.0% | |
| TGTGTATCTGCAACTGTCAA+TGG | - | chr1.4:28615146-28615165 | MS.gene65517:CDS | 40.0% | |
| TGTTCAGTACCAAATGCTAG+AGG | - | chr1.4:28617370-28617389 | MS.gene65517:CDS | 40.0% | |
| TTCTATACCGATCACTGATC+CGG | - | chr1.4:28615781-28615800 | MS.gene65517:intron | 40.0% | |
| TTTGGTACTTCCTAGTGAAG+AGG | - | chr1.4:28615991-28616010 | MS.gene65517:intron | 40.0% | |
| ! | AGGTGATTTTGCACATGGTT+AGG | - | chr1.4:28616551-28616570 | MS.gene65517:CDS | 40.0% |
| ! | AGTTACGGCTTTTGAACTTC+CGG | + | chr1.4:28617721-28617740 | None:intergenic | 40.0% |
| ! | ATGGATTTGAAGTTACCGCA+AGG | - | chr1.4:28617693-28617712 | MS.gene65517:CDS | 40.0% |
| ! | CAAAACAAGTATCGCGTAAC+AGG | + | chr1.4:28615975-28615994 | None:intergenic | 40.0% |
| ! | CTGTTACGCGATACTTGTTT+TGG | - | chr1.4:28615973-28615992 | MS.gene65517:intron | 40.0% |
| ! | TCATGAGTAATGGAATGGGA+AGG | - | chr1.4:28616209-28616228 | MS.gene65517:CDS | 40.0% |
| !! | CAACACTAAGCATTGGCATT+CGG | + | chr1.4:28615916-28615935 | None:intergenic | 40.0% |
| !! | CAAGTCTATGGCTTTATGCA+AGG | - | chr1.4:28616456-28616475 | MS.gene65517:CDS | 40.0% |
| !! | CGTATTGAATCAAGTATCGG+CGG | + | chr1.4:28617091-28617110 | None:intergenic | 40.0% |
| !! | CTTAGTGTTGGCGATTTCAA+AGG | - | chr1.4:28615926-28615945 | MS.gene65517:intron | 40.0% |
| !! | TAGTGTTGGCGATTTCAAAG+GGG | - | chr1.4:28615928-28615947 | MS.gene65517:intron | 40.0% |
| !!! | ATGGCTTTATGCAAGGGTTT+TGG | - | chr1.4:28616463-28616482 | MS.gene65517:CDS | 40.0% |
| !!! | CAGGATTTTTTGGAGTTCTC+CGG | + | chr1.4:28617854-28617873 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGATTTAAGGTTG+AGG | - | chr1.4:28616477-28616496 | MS.gene65517:CDS | 40.0% |
| !!! | TTTCAAGTTTTGGCGGAATC+TGG | - | chr1.4:28616613-28616632 | MS.gene65517:CDS | 40.0% |
| AACTGATGACCCTTGCTCTT+CGG | - | chr1.4:28617401-28617420 | MS.gene65517:CDS | 45.0% | |
| ACAACATCCGGATCAGTGAT+CGG | + | chr1.4:28615791-28615810 | None:intergenic | 45.0% | |
| AGAGTTCTTGCTGAAGCGAA+AGG | - | chr1.4:28615523-28615542 | MS.gene65517:CDS | 45.0% | |
| AGGGAGCTTGGAATTGAGTA+CGG | - | chr1.4:28615548-28615567 | MS.gene65517:CDS | 45.0% | |
| AGTCGAGGAAGGATTGAACA+TGG | - | chr1.4:28616637-28616656 | MS.gene65517:CDS | 45.0% | |
| AGTGGAGTTTCTGTTGATGC+AGG | - | chr1.4:28615875-28615894 | MS.gene65517:intron | 45.0% | |
| AGTTTCTGTTGATGCAGGAC+CGG | - | chr1.4:28615880-28615899 | MS.gene65517:intron | 45.0% | |
| ATAGATGGTAACAATGGGGG+AGG | - | chr1.4:28616580-28616599 | MS.gene65517:CDS | 45.0% | |
| ATTCTGTTGCAAGGATTCGC+CGG | - | chr1.4:28617832-28617851 | MS.gene65517:CDS | 45.0% | |
| CAAGATCTAGCCTCTTCACT+AGG | + | chr1.4:28616004-28616023 | None:intergenic | 45.0% | |
| CACATGAAACCAATGCAGTG+AGG | + | chr1.4:28615448-28615467 | None:intergenic | 45.0% | |
| CAGAGACCTCAGTTACTTCA+GGG | - | chr1.4:28616743-28616762 | MS.gene65517:CDS | 45.0% | |
| CAGCATGGCCAACAAGATTA+AGG | + | chr1.4:28617622-28617641 | None:intergenic | 45.0% | |
| CCCTTGACTCTTACAACATC+CGG | + | chr1.4:28615803-28615822 | None:intergenic | 45.0% | |
| CCGGATGTTGTAAGAGTCAA+GGG | - | chr1.4:28615800-28615819 | MS.gene65517:intron | 45.0% | |
| CCTTGCAACAGAATGGCTTT+CGG | + | chr1.4:28617826-28617845 | None:intergenic | 45.0% | |
| CGAATGCCAATGCTTAGTGT+TGG | - | chr1.4:28615914-28615933 | MS.gene65517:intron | 45.0% | |
| CTAGTGAAGAGGCTAGATCT+TGG | - | chr1.4:28616002-28616021 | MS.gene65517:intron | 45.0% | |
| CTTAATCTTGTTGGCCATGC+TGG | - | chr1.4:28617620-28617639 | MS.gene65517:CDS | 45.0% | |
| CTTGAAAGTCCTCACTGCAT+TGG | - | chr1.4:28615436-28615455 | MS.gene65517:CDS | 45.0% | |
| GATTCGATGGTAAGGACAAG+CGG | - | chr1.4:28616307-28616326 | MS.gene65517:CDS | 45.0% | |
| GCATAGGGATCAAAGTGATG+AGG | + | chr1.4:28615484-28615503 | None:intergenic | 45.0% | |
| GGAAGTTCAAAAGCCGTAAC+TGG | - | chr1.4:28617720-28617739 | MS.gene65517:CDS | 45.0% | |
| GGAGAAAAGGAACGCTATGA+TGG | - | chr1.4:28616156-28616175 | MS.gene65517:CDS | 45.0% | |
| GTAGTTGAAACCGAAGAGCA+AGG | + | chr1.4:28617414-28617433 | None:intergenic | 45.0% | |
| TAGATGGTAACAATGGGGGA+GGG | - | chr1.4:28616581-28616600 | MS.gene65517:CDS | 45.0% | |
| TCAAACTTTCCTCGAATGCC+CGG | + | chr1.4:28616798-28616817 | None:intergenic | 45.0% | |
| TCAGAGACCTCAGTTACTTC+AGG | - | chr1.4:28616742-28616761 | MS.gene65517:CDS | 45.0% | |
| TCCGGATGTTGTAAGAGTCA+AGG | - | chr1.4:28615799-28615818 | MS.gene65517:intron | 45.0% | |
| TGAGGAAAGCCTCTAGCATT+TGG | + | chr1.4:28617382-28617401 | None:intergenic | 45.0% | |
| TGGAGGTGGAAGATTTCCTT+TGG | - | chr1.4:28616381-28616400 | MS.gene65517:CDS | 45.0% | |
| TTGAAGTTACCGCAAGGATC+CGG | - | chr1.4:28617699-28617718 | MS.gene65517:CDS | 45.0% | |
| TTTGAACTTCCGGATCCTTG+CGG | + | chr1.4:28617711-28617730 | None:intergenic | 45.0% | |
| ! | GAGCATTGCAACAGGAGAAA+AGG | - | chr1.4:28616143-28616162 | MS.gene65517:CDS | 45.0% |
| ! | TGACGAGAAGAGGGTTTTTC+AGG | - | chr1.4:28616531-28616550 | MS.gene65517:CDS | 45.0% |
| !! | AGTGTTGGCGATTTCAAAGG+GGG | - | chr1.4:28615929-28615948 | MS.gene65517:intron | 45.0% |
| !! | GCCTATCGCTGTTGCTTTAA+CGG | - | chr1.4:28617742-28617761 | MS.gene65517:CDS | 45.0% |
| AAGCCTCCCTGAAGTAACTG+AGG | + | chr1.4:28616752-28616771 | None:intergenic | 50.0% | |
| AAGGATGTGTACGAGTGACC+GGG | - | chr1.4:28616777-28616796 | MS.gene65517:CDS | 50.0% | |
| AATTCAGATAGGGACGGTGG+AGG | - | chr1.4:28616364-28616383 | MS.gene65517:CDS | 50.0% | |
| ACATCACCGTTAGACGAGCT+TGG | + | chr1.4:28616679-28616698 | None:intergenic | 50.0% | |
| AGACCTCAGTTACTTCAGGG+AGG | - | chr1.4:28616746-28616765 | MS.gene65517:CDS | 50.0% | |
| AGAGCAAGGGTCATCAGTTG+AGG | + | chr1.4:28617400-28617419 | None:intergenic | 50.0% | |
| AGCTTGCATCGCCAAGTCTA+TGG | - | chr1.4:28616444-28616463 | MS.gene65517:CDS | 50.0% | |
| CAACAGCGATAGGCCAGTTA+CGG | + | chr1.4:28617736-28617755 | None:intergenic | 50.0% | |
| CCGAAAGCCATTCTGTTGCA+AGG | - | chr1.4:28617823-28617842 | MS.gene65517:CDS | 50.0% | |
| GAAGGATGTGTACGAGTGAC+CGG | - | chr1.4:28616776-28616795 | MS.gene65517:CDS | 50.0% | |
| GACAATTCAGATAGGGACGG+TGG | - | chr1.4:28616361-28616380 | MS.gene65517:CDS | 50.0% | |
| GACTTGCAGACCTCTGAACA+AGG | + | chr1.4:28617500-28617519 | None:intergenic | 50.0% | |
| GCCGTTAAAGCAACAGCGAT+AGG | + | chr1.4:28617746-28617765 | None:intergenic | 50.0% | |
| GGCGAATCCTTGCAACAGAA+TGG | + | chr1.4:28617833-28617852 | None:intergenic | 50.0% | |
| TCAACTACGCTGTTCTACCG+CGG | - | chr1.4:28617426-28617445 | MS.gene65517:CDS | 50.0% | |
| TGGAGACCAAGCTCGTCTAA+CGG | - | chr1.4:28616670-28616689 | MS.gene65517:CDS | 50.0% | |
| ! | CAGAGGTCTGCAAGTCTTGT+TGG | - | chr1.4:28617504-28617523 | MS.gene65517:CDS | 50.0% |
| ! | GCGAAATCGAGCATTGCAAC+AGG | - | chr1.4:28616135-28616154 | MS.gene65517:CDS | 50.0% |
| ! | GTGTTGGCGATTTCAAAGGG+GGG | - | chr1.4:28615930-28615949 | MS.gene65517:intron | 50.0% |
| !! | CAAGTATCGGCGGCTAATGA+AGG | + | chr1.4:28617081-28617100 | None:intergenic | 50.0% |
| ACTGTGACGATGACACGAGC+TGG | - | chr1.4:28615183-28615202 | MS.gene65517:CDS | 55.0% | |
| CGGAATCTGGAAGTCGAGGA+AGG | - | chr1.4:28616626-28616645 | MS.gene65517:CDS | 55.0% | |
| CTCTGAACTCTCCCCTGGTT+CGG | + | chr1.4:28617461-28617480 | None:intergenic | 55.0% | |
| CTTGCTGAAGCGAAAGGCGA+GGG | - | chr1.4:28615529-28615548 | MS.gene65517:CDS | 55.0% | |
| GATGACTCTGAACTCTCCCC+TGG | + | chr1.4:28617466-28617485 | None:intergenic | 55.0% | |
| GGTTGCAGAACTGTGCTGTG+TGG | - | chr1.4:28615693-28615712 | MS.gene65517:intron | 55.0% | |
| GTTACTTCAGGGAGGCTTGC+AGG | - | chr1.4:28616754-28616773 | MS.gene65517:CDS | 55.0% | |
| GTTGCTGATCAGGTAGCCGT+GGG | - | chr1.4:28616055-28616074 | MS.gene65517:intron | 55.0% | |
| TAACAGGCCTCCGTTACCTC+AGG | + | chr1.4:28615959-28615978 | None:intergenic | 55.0% | |
| TCTGAACTCTCCCCTGGTTC+GGG | + | chr1.4:28617460-28617479 | None:intergenic | 55.0% | |
| TCTTGCTGAAGCGAAAGGCG+AGG | - | chr1.4:28615528-28615547 | MS.gene65517:CDS | 55.0% | |
| TGCGGCATGAGAAAGACCCA+CGG | + | chr1.4:28616074-28616093 | None:intergenic | 55.0% | |
| TGTTGCTGATCAGGTAGCCG+TGG | - | chr1.4:28616054-28616073 | MS.gene65517:intron | 55.0% | |
| TTGGCGGAATCTGGAAGTCG+AGG | - | chr1.4:28616622-28616641 | MS.gene65517:CDS | 55.0% | |
| ! | CGGCGATTTTCTGATCGCAG+TGG | - | chr1.4:28615241-28615260 | MS.gene65517:CDS | 55.0% |
| ! | GAACGCTATGATGGCGAGTG+AGG | - | chr1.4:28616165-28616184 | MS.gene65517:CDS | 55.0% |
| AAGCGAAAGGCGAGGGAGCT+TGG | - | chr1.4:28615536-28615555 | MS.gene65517:CDS | 60.0% | |
| CGGTAACCATCCCCGAACCA+GGG | - | chr1.4:28617446-28617465 | MS.gene65517:CDS | 60.0% | |
| CTTCAGGGAGGCTTGCAGGA+AGG | - | chr1.4:28616758-28616777 | MS.gene65517:CDS | 60.0% | |
| GATGGCGAGTGAGGCTAGAG+CGG | - | chr1.4:28616174-28616193 | MS.gene65517:CDS | 60.0% | |
| GGCATTCGGATCGCAGCAAC+CGG | + | chr1.4:28615902-28615921 | None:intergenic | 60.0% | |
| GGTAACCATCCCCGAACCAG+GGG | - | chr1.4:28617447-28617466 | MS.gene65517:CDS | 60.0% | |
| GTGACGATGACACGAGCTGG+TGG | - | chr1.4:28615186-28615205 | MS.gene65517:CDS | 60.0% | |
| TACGAGTGACCGGGCATTCG+AGG | - | chr1.4:28616786-28616805 | MS.gene65517:CDS | 60.0% | |
| TCAGATAGGGACGGTGGAGG+TGG | - | chr1.4:28616367-28616386 | MS.gene65517:CDS | 60.0% | |
| TTTCAAAGGGGGGACGCCTG+AGG | - | chr1.4:28615940-28615959 | MS.gene65517:intron | 60.0% | |
| ! | CAAAGGGGCATGCACCAGCA+TGG | + | chr1.4:28617637-28617656 | None:intergenic | 60.0% |
| ! | CTGAACTCTCCCCTGGTTCG+GGG | + | chr1.4:28617459-28617478 | None:intergenic | 60.0% |
| ! | CTGCTTGCTGCTGCGAGTAG+TGG | - | chr1.4:28615857-28615876 | MS.gene65517:intron | 60.0% |
| ! | TGGTTCGGGGATGGTTACCG+CGG | + | chr1.4:28617446-28617465 | None:intergenic | 60.0% |
| AGGGGGGACGCCTGAGGTAA+CGG | - | chr1.4:28615946-28615965 | MS.gene65517:intron | 65.0% | |
| GCGGTAACCATCCCCGAACC+AGG | - | chr1.4:28617445-28617464 | MS.gene65517:CDS | 65.0% | |
| !! | ACTCTCCCCTGGTTCGGGGA+TGG | + | chr1.4:28617455-28617474 | None:intergenic | 65.0% |
| ! | GGGGACGCCTGAGGTAACGG+AGG | - | chr1.4:28615949-28615968 | MS.gene65517:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 28615098 | 28617874 | 28615098 | ID=MS.gene65517 |
| chr1.4 | mRNA | 28615098 | 28617874 | 28615098 | ID=MS.gene65517.t1;Parent=MS.gene65517 |
| chr1.4 | exon | 28616126 | 28617874 | 28616126 | ID=MS.gene65517.t1.exon1;Parent=MS.gene65517.t1 |
| chr1.4 | CDS | 28616126 | 28617874 | 28616126 | ID=cds.MS.gene65517.t1;Parent=MS.gene65517.t1 |
| chr1.4 | exon | 28615389 | 28615620 | 28615389 | ID=MS.gene65517.t1.exon2;Parent=MS.gene65517.t1 |
| chr1.4 | CDS | 28615389 | 28615620 | 28615389 | ID=cds.MS.gene65517.t1;Parent=MS.gene65517.t1 |
| chr1.4 | exon | 28615098 | 28615312 | 28615098 | ID=MS.gene65517.t1.exon3;Parent=MS.gene65517.t1 |
| chr1.4 | CDS | 28615098 | 28615312 | 28615098 | ID=cds.MS.gene65517.t1;Parent=MS.gene65517.t1 |
| Gene Sequence |
| Protein sequence |
