Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073869.t1 | XP_024631074.1 | 96.2 | 759 | 29 | 0 | 9 | 767 | 1 | 759 | 0.00E+00 | 1371.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073869.t1 | Q0WPQ2 | 54.0 | 781 | 320 | 14 | 9 | 765 | 1 | 766 | 4.1e-208 | 726.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073869.t1 | A0A072VSP2 | 96.2 | 759 | 29 | 0 | 9 | 767 | 1 | 759 | 0.0e+00 | 1371.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene073869.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049222 | MS.gene073869 | -0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene050868 | MS.gene073869 | -0.800278 | 1.55E-48 | -1.69E-46 |
| MS.gene050871 | MS.gene073869 | -0.800398 | 1.47E-48 | -1.69E-46 |
| MS.gene052503 | MS.gene073869 | -0.808565 | 2.91E-50 | -1.69E-46 |
| MS.gene052823 | MS.gene073869 | -0.815576 | 8.61E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene073869 | -0.822345 | 2.49E-53 | -1.69E-46 |
| MS.gene053108 | MS.gene073869 | 0.808887 | 2.48E-50 | -1.69E-46 |
| MS.gene053203 | MS.gene073869 | -0.826253 | 3.00E-54 | -1.69E-46 |
| MS.gene053421 | MS.gene073869 | 0.926092 | 7.53E-91 | -1.69E-46 |
| MS.gene055577 | MS.gene073869 | -0.804779 | 1.83E-49 | -1.69E-46 |
| MS.gene058157 | MS.gene073869 | -0.812695 | 3.73E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene073869 | -0.800614 | 1.33E-48 | -1.69E-46 |
| MS.gene060187 | MS.gene073869 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene073869 | -0.811616 | 6.40E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene073869 | MS.gene74902 | PPI |
| MS.gene073869 | MS.gene025978 | PPI |
| MS.gene073869 | MS.gene74904 | PPI |
| MS.gene073869 | MS.gene005062 | PPI |
| MS.gene073869 | MS.gene050576 | PPI |
| MS.gene073869 | MS.gene005060 | PPI |
| MS.gene073869 | MS.gene058783 | PPI |
| MS.gene073869 | MS.gene024512 | PPI |
| MS.gene073869 | MS.gene22870 | PPI |
| MS.gene073869 | MS.gene07610 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073869.t1 | MTR_1g044210 | 96.179 | 759 | 29 | 0 | 9 | 767 | 1 | 759 | 0.0 | 1503 |
| MS.gene073869.t1 | MTR_1g073840 | 71.560 | 763 | 209 | 7 | 9 | 768 | 1 | 758 | 0.0 | 1097 |
| MS.gene073869.t1 | MTR_7g116330 | 54.201 | 738 | 323 | 8 | 33 | 765 | 31 | 758 | 0.0 | 815 |
| MS.gene073869.t1 | MTR_1g079790 | 53.146 | 747 | 333 | 8 | 27 | 765 | 18 | 755 | 0.0 | 780 |
| MS.gene073869.t1 | MTR_1g079790 | 53.886 | 579 | 255 | 7 | 27 | 597 | 18 | 592 | 0.0 | 607 |
| MS.gene073869.t1 | MTR_4g031150 | 37.787 | 741 | 439 | 14 | 36 | 766 | 54 | 782 | 2.15e-155 | 471 |
| MS.gene073869.t1 | MTR_7g109150 | 39.236 | 576 | 323 | 10 | 36 | 597 | 5 | 567 | 4.72e-115 | 362 |
| MS.gene073869.t1 | MTR_4g134880 | 64.865 | 74 | 24 | 2 | 697 | 768 | 1 | 74 | 3.75e-23 | 94.0 |
| MS.gene073869.t1 | MTR_8g080770 | 30.827 | 133 | 82 | 3 | 641 | 765 | 728 | 858 | 3.31e-13 | 73.9 |
| MS.gene073869.t1 | MTR_8g080770 | 30.827 | 133 | 82 | 3 | 641 | 765 | 837 | 967 | 3.72e-13 | 73.9 |
| MS.gene073869.t1 | MTR_3g085130 | 28.676 | 136 | 86 | 3 | 641 | 768 | 692 | 824 | 5.29e-12 | 70.1 |
| MS.gene073869.t1 | MTR_3g085130 | 28.667 | 150 | 95 | 4 | 627 | 768 | 889 | 1034 | 6.70e-12 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073869.t1 | AT3G23150 | 54.130 | 787 | 310 | 15 | 9 | 765 | 1 | 766 | 0.0 | 787 |
| MS.gene073869.t1 | AT3G04580 | 51.877 | 746 | 344 | 10 | 31 | 766 | 22 | 762 | 0.0 | 743 |
| MS.gene073869.t1 | AT3G04580 | 51.877 | 746 | 344 | 10 | 31 | 766 | 22 | 762 | 0.0 | 743 |
| MS.gene073869.t1 | AT3G23150 | 56.106 | 606 | 226 | 11 | 9 | 591 | 1 | 589 | 0.0 | 624 |
| MS.gene073869.t1 | AT1G04310 | 48.083 | 626 | 288 | 10 | 18 | 621 | 12 | 622 | 3.36e-180 | 530 |
| MS.gene073869.t1 | AT1G04310 | 48.083 | 626 | 288 | 10 | 18 | 621 | 12 | 622 | 3.36e-180 | 530 |
| MS.gene073869.t1 | AT1G66340 | 37.685 | 743 | 435 | 15 | 36 | 766 | 4 | 730 | 1.37e-154 | 468 |
| MS.gene073869.t1 | AT2G40940 | 41.416 | 466 | 267 | 5 | 50 | 511 | 17 | 480 | 2.29e-110 | 349 |
| MS.gene073869.t1 | AT1G27320 | 23.503 | 451 | 297 | 13 | 350 | 765 | 428 | 865 | 3.27e-13 | 73.9 |
| MS.gene073869.t1 | AT5G35750 | 33.083 | 133 | 65 | 3 | 641 | 752 | 1031 | 1160 | 3.68e-12 | 70.9 |
Find 186 sgRNAs with CRISPR-Local
Find 229 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATGCATATTGGGTTTAA+TGG | 0.188176 | 1.2:-27495960 | MS.gene073869:CDS |
| GTTAAACTGTCGGAAACTTT+AGG | 0.198346 | 1.2:-27498081 | MS.gene073869:CDS |
| CCCCTTTGAAGTTATTCTTT+TGG | 0.208877 | 1.2:-27496105 | MS.gene073869:CDS |
| ATGGCTTTATGCAAGGGTTT+TGG | 0.236524 | 1.2:-27497289 | MS.gene073869:CDS |
| TTGTTTAATAGCTGGACTTA+TGG | 0.240419 | 1.2:-27498375 | MS.gene073869:CDS |
| ATGAAATAAAGAAGCTCAAT+AGG | 0.260762 | 1.2:+27498474 | None:intergenic |
| GCAACTTATGAGAGAGAAAT+TGG | 0.272205 | 1.2:-27497644 | MS.gene073869:CDS |
| TAACAATACATCCTAGTTTC+TGG | 0.278898 | 1.2:+27496183 | None:intergenic |
| TCTGAACTCTCCCCTGGTTC+GGG | 0.291012 | 1.2:+27496296 | None:intergenic |
| TTAAACTGTCGGAAACTTTA+GGG | 0.291922 | 1.2:-27498080 | MS.gene073869:CDS |
| ATTGCTTTCATTGTACTTTG+TGG | 0.294523 | 1.2:-27498408 | MS.gene073869:CDS |
| CTTAACTTGCCTGATTTAGA+TGG | 0.294640 | 1.2:-27496080 | MS.gene073869:CDS |
| GATTCTTGTGTTTCAAGTTT+TGG | 0.305051 | 1.2:-27497149 | MS.gene073869:CDS |
| GTTACTTCAGGGAGGCTTGC+AGG | 0.306598 | 1.2:-27496998 | MS.gene073869:CDS |
| CTCTGAACTCTCCCCTGGTT+CGG | 0.307952 | 1.2:+27496295 | None:intergenic |
| GCCTATCGCTGTTGCTTTAA+CGG | 0.315525 | 1.2:-27496012 | MS.gene073869:CDS |
| CCTTTGGAGATGAAATGTTT+TGG | 0.321337 | 1.2:-27497355 | MS.gene073869:CDS |
| CTGTTACGCGATACTTGTTT+TGG | 0.339387 | 1.2:-27497779 | MS.gene073869:CDS |
| CAGCATGGCCAACAAGATTA+AGG | 0.340276 | 1.2:+27496135 | None:intergenic |
| GTGCAAACATTCCATTCAAA+TGG | 0.340458 | 1.2:-27498446 | MS.gene073869:CDS |
| CAAAACAAGTATCGCGTAAC+AGG | 0.352897 | 1.2:+27497780 | None:intergenic |
| AGCTTGCATCGCCAAGTCTA+TGG | 0.355095 | 1.2:-27497308 | MS.gene073869:CDS |
| ATTGTTACATCTGTTTCTTC+CGG | 0.360494 | 1.2:-27496167 | MS.gene073869:CDS |
| AGGCCAATGCATTCAGTTAT+GGG | 0.362686 | 1.2:-27497523 | MS.gene073869:CDS |
| TCAGAGACCTCAGTTACTTC+AGG | 0.363567 | 1.2:-27497010 | MS.gene073869:CDS |
| TCTTTGCCTAACTATATTAT+CGG | 0.368544 | 1.2:-27497244 | MS.gene073869:CDS |
| GCGAATCCTTGCAACAGAAT+TGG | 0.368969 | 1.2:+27495924 | None:intergenic |
| TTCGAATGCCTTAATCTTGT+TGG | 0.377583 | 1.2:-27496143 | MS.gene073869:CDS |
| TATTAAAGTTGTTGCTGATC+AGG | 0.379034 | 1.2:-27497707 | MS.gene073869:CDS |
| GTCATCGTCACAGTTGCATT+TGG | 0.382217 | 1.2:+27498578 | None:intergenic |
| GATTTAAGGTTGAGGTTGAT+AGG | 0.383654 | 1.2:-27497267 | MS.gene073869:CDS |
| CTTGCAACAGAATTGGCTTT+CGG | 0.388691 | 1.2:+27495931 | None:intergenic |
| GGTGTATCTGCAACTGCTAA+TGG | 0.389182 | 1.2:-27498606 | MS.gene073869:CDS |
| TGAGGAAAGCCTCTAGCATT+TGG | 0.394008 | 1.2:+27496374 | None:intergenic |
| CTTAATCTTGTTGGCCATGC+TGG | 0.394439 | 1.2:-27496134 | MS.gene073869:CDS |
| AACTGATGACCCTTGCTCTT+CGG | 0.397404 | 1.2:-27496352 | MS.gene073869:CDS |
| TGGAGGTGGAAGATTTCCTT+TGG | 0.397483 | 1.2:-27497371 | MS.gene073869:CDS |
| GGAAGTTCAAAAGCCGTAAC+TGG | 0.402042 | 1.2:-27496034 | MS.gene073869:CDS |
| ATGTATAAAGGAACAGCATC+TGG | 0.402875 | 1.2:-27498654 | MS.gene073869:CDS |
| CATCTAAATCAGGCAAGTTA+AGG | 0.412834 | 1.2:+27496081 | None:intergenic |
| AAGGCCAATGCATTCAGTTA+TGG | 0.414233 | 1.2:-27497524 | MS.gene073869:CDS |
| CTTGAAAGTCCTCACTGCAT+TGG | 0.415305 | 1.2:-27498316 | MS.gene073869:CDS |
| AAGCGAAAGGCGAGGGAGCT+TGG | 0.417170 | 1.2:-27498216 | MS.gene073869:CDS |
| ATAGGACCTAATTTCCCTTC+AGG | 0.424148 | 1.2:+27495883 | None:intergenic |
| CAGAGGTCTGCAAGTCTTGT+TGG | 0.425682 | 1.2:-27496249 | MS.gene073869:CDS |
| TCCAAAAGAATAACTTCAAA+GGG | 0.428364 | 1.2:+27496104 | None:intergenic |
| GATCAAAGTGATGAGGGTTA+TGG | 0.428611 | 1.2:+27498278 | None:intergenic |
| ACTTCAAATCCATCTAAATC+AGG | 0.429557 | 1.2:+27496071 | None:intergenic |
| AAGATTAAGGCATTCGAATC+CGG | 0.430168 | 1.2:+27496148 | None:intergenic |
| TGACACATTTGTTTAATAGC+TGG | 0.431512 | 1.2:-27498383 | MS.gene073869:CDS |
| GAAGGATGTGTACGAGTGAC+CGG | 0.443598 | 1.2:-27496976 | MS.gene073869:CDS |
| AAGCTCAGAAGAAGAATTGC+GGG | 0.444376 | 1.2:-27495988 | MS.gene073869:CDS |
| CCCTATGCTTCTTAAAGTAA+AGG | 0.446192 | 1.2:-27498256 | MS.gene073869:CDS |
| GGCATTCGGATCGCAGCAAC+CGG | 0.448019 | 1.2:+27497853 | None:intergenic |
| GATGTTGGATCAATGTATAA+AGG | 0.452982 | 1.2:-27498666 | MS.gene073869:CDS |
| ATGCTATGGACAATTCAGAT+AGG | 0.455663 | 1.2:-27497399 | MS.gene073869:CDS |
| CCCTTGACTCTTACAACATC+CGG | 0.458403 | 1.2:+27497952 | None:intergenic |
| TTCTATACCGATCACTGATC+CGG | 0.461024 | 1.2:-27497971 | MS.gene073869:CDS |
| TGAAATAAAGAAGCTCAATA+GGG | 0.466212 | 1.2:+27498475 | None:intergenic |
| CTGCTTGCTGCTGCGAGTAG+TGG | 0.466733 | 1.2:-27497895 | MS.gene073869:CDS |
| TTGAAGTTACCGCAAGGATC+CGG | 0.468641 | 1.2:-27496055 | MS.gene073869:CDS |
| AACCTCACTCATGAATTGAA+TGG | 0.471461 | 1.2:-27498009 | MS.gene073869:CDS |
| GCGAAATCGAGCATTGCAAC+AGG | 0.472193 | 1.2:-27497617 | MS.gene073869:CDS |
| CAACACTAAGCATTGGCATT+CGG | 0.473530 | 1.2:+27497839 | None:intergenic |
| TACGAGTGACCGGGCATTCG+AGG | 0.475000 | 1.2:-27496966 | MS.gene073869:CDS |
| TCAGATAGGGACGGTGGAGG+TGG | 0.475127 | 1.2:-27497385 | MS.gene073869:CDS |
| TTTCAGAAAGTCATGAGTAA+TGG | 0.476424 | 1.2:-27497553 | MS.gene073869:CDS |
| CTAGTGAAGAGGCTAGATCT+TGG | 0.479339 | 1.2:-27497750 | MS.gene073869:CDS |
| GAAAGTCATGAGTAATGGAA+TGG | 0.480686 | 1.2:-27497548 | MS.gene073869:CDS |
| TGCAAACATTCCATTCAAAT+GGG | 0.481437 | 1.2:-27498445 | MS.gene073869:CDS |
| CTTAGTGTTGGCGATTTCAA+AGG | 0.483799 | 1.2:-27497826 | MS.gene073869:CDS |
| TGTAAGAGTCAAGGGAGATA+AGG | 0.484906 | 1.2:-27497944 | MS.gene073869:CDS |
| GAGCATTGCAACAGGAGAAA+AGG | 0.488985 | 1.2:-27497609 | MS.gene073869:CDS |
| TCTATTAATATCGTCGTTGT+CGG | 0.489246 | 1.2:+27496226 | None:intergenic |
| CAGAAGTTTCTCCAGAAACT+AGG | 0.490213 | 1.2:-27496194 | MS.gene073869:CDS |
| TCAAACTTTCCTCGAATGCC+CGG | 0.492186 | 1.2:+27496957 | None:intergenic |
| ACCTCACTCATGAATTGAAT+GGG | 0.492396 | 1.2:-27498008 | MS.gene073869:CDS |
| CAACAGCGATAGGCCAGTTA+CGG | 0.493707 | 1.2:+27496021 | None:intergenic |
| TTAGTGTTGGCGATTTCAAA+GGG | 0.496178 | 1.2:-27497825 | MS.gene073869:CDS |
| GCGGTAACCATCCCCGAACC+AGG | 0.502417 | 1.2:-27496308 | MS.gene073869:CDS |
| GTCCAAAAGAATAACTTCAA+AGG | 0.504471 | 1.2:+27496103 | None:intergenic |
| ATAATGAAACAGAATGAAGC+TGG | 0.506215 | 1.2:-27498177 | MS.gene073869:CDS |
| ACTTGATAGATGGTAACAAT+GGG | 0.506406 | 1.2:-27497177 | MS.gene073869:CDS |
| TAACAGGCCTCCGTTACCTC+AGG | 0.507753 | 1.2:+27497796 | None:intergenic |
| AGTGGAGTTTCTGTTGATGC+AGG | 0.512394 | 1.2:-27497877 | MS.gene073869:CDS |
| CAAGTCTATGGCTTTATGCA+AGG | 0.514591 | 1.2:-27497296 | MS.gene073869:CDS |
| CCTTTACTTTAAGAAGCATA+GGG | 0.517469 | 1.2:+27498256 | None:intergenic |
| CAGAGACCTCAGTTACTTCA+GGG | 0.520849 | 1.2:-27497009 | MS.gene073869:CDS |
| TACTACCTTGGTTAAACTGT+CGG | 0.524792 | 1.2:-27498091 | MS.gene073869:CDS |
| CAAGATCTAGCCTCTTCACT+AGG | 0.525819 | 1.2:+27497751 | None:intergenic |
| GGAGAAAAGGAACGCTATGA+TGG | 0.526316 | 1.2:-27497596 | MS.gene073869:CDS |
| ACCTTTACTTTAAGAAGCAT+AGG | 0.527347 | 1.2:+27498255 | None:intergenic |
| AACTTGATAGATGGTAACAA+TGG | 0.531282 | 1.2:-27497178 | MS.gene073869:CDS |
| AAAGTCATGAGTAATGGAAT+GGG | 0.532334 | 1.2:-27497547 | MS.gene073869:CDS |
| AGTTTCTGTTGATGCAGGAC+CGG | 0.541642 | 1.2:-27497872 | MS.gene073869:CDS |
| AAGTCTATGGCTTTATGCAA+GGG | 0.542582 | 1.2:-27497295 | MS.gene073869:CDS |
| GATGCCTAATGTTGATAAAA+CGG | 0.545342 | 1.2:-27498037 | MS.gene073869:CDS |
| ACTCTCCCCTGGTTCGGGGA+TGG | 0.547088 | 1.2:+27496301 | None:intergenic |
| TTGAACATGGATATGCAACT+TGG | 0.548877 | 1.2:-27497102 | MS.gene073869:CDS |
| GAAACTTATTGTGGATTCGA+TGG | 0.549832 | 1.2:-27497458 | MS.gene073869:CDS |
| GATCAAAATTCCTTGTTCAG+AGG | 0.550379 | 1.2:-27496266 | MS.gene073869:CDS |
| GATGACTCTGAACTCTCCCC+TGG | 0.550748 | 1.2:+27496290 | None:intergenic |
| TCGTCACCGATAATATAGTT+AGG | 0.551741 | 1.2:+27497238 | None:intergenic |
| TGTTGCTGATCAGGTAGCCG+TGG | 0.554230 | 1.2:-27497698 | MS.gene073869:CDS |
| AAATCGCCAACACTAAGCAT+TGG | 0.554872 | 1.2:+27497832 | None:intergenic |
| GAACTTGATGAATGATGCTA+TGG | 0.555490 | 1.2:-27497413 | MS.gene073869:CDS |
| CGAAAGCCAATTCTGTTGCA+AGG | 0.555618 | 1.2:-27495930 | MS.gene073869:CDS |
| TCCCATTCAATTCATGAGTG+AGG | 0.557270 | 1.2:+27498007 | None:intergenic |
| TTGCGATTCTTCTAGAATTG+CGG | 0.559822 | 1.2:+27497663 | None:intergenic |
| AGAGTTCTTGCTGAAGCGAA+AGG | 0.561096 | 1.2:-27498229 | MS.gene073869:CDS |
| CAGCATGATTTGAAATGTGT+GGG | 0.561684 | 1.2:+27498350 | None:intergenic |
| CCGGATGTTGTAAGAGTCAA+GGG | 0.561701 | 1.2:-27497952 | MS.gene073869:CDS |
| TGCTATGGACAATTCAGATA+GGG | 0.564858 | 1.2:-27497398 | MS.gene073869:CDS |
| TTATTGTGGATTCGATGGTA+AGG | 0.567940 | 1.2:-27497453 | MS.gene073869:CDS |
| ATTCTGTTGCAAGGATTCGC+CGG | 0.568420 | 1.2:-27495921 | MS.gene073869:CDS |
| GCCGTTAAAGCAACAGCGAT+AGG | 0.568669 | 1.2:+27496011 | None:intergenic |
| CCAAAACATTTCATCTCCAA+AGG | 0.569295 | 1.2:+27497355 | None:intergenic |
| GAATGAACAGAAACTTATTG+TGG | 0.569510 | 1.2:-27497467 | MS.gene073869:CDS |
| CAGATACACCCAATAAGAGC+AGG | 0.570029 | 1.2:+27498619 | None:intergenic |
| ATATTATCGGTGACGAGAAG+AGG | 0.570583 | 1.2:-27497231 | MS.gene073869:CDS |
| ATGGTTAGGAACTTGATAGA+TGG | 0.571670 | 1.2:-27497187 | MS.gene073869:CDS |
| ATTCTAGAATGGCAGAAAGT+CGG | 0.574057 | 1.2:-27498531 | MS.gene073869:CDS |
| CGAATGCCAATGCTTAGTGT+TGG | 0.574855 | 1.2:-27497838 | MS.gene073869:CDS |
| CATATGCAAGAAGATAATCC+AGG | 0.578098 | 1.2:-27496927 | MS.gene073869:intron |
| CTTGCATAAAGCCATAGACT+TGG | 0.578350 | 1.2:+27497297 | None:intergenic |
| TCCGGATGTTGTAAGAGTCA+AGG | 0.578653 | 1.2:-27497953 | MS.gene073869:CDS |
| TTTGGTACTTCCTAGTGAAG+AGG | 0.580067 | 1.2:-27497761 | MS.gene073869:CDS |
| GAACGCTATGATGGCGAGTG+AGG | 0.581349 | 1.2:-27497587 | MS.gene073869:CDS |
| TGTTATTGGCAGTCAATGAA+AGG | 0.581485 | 1.2:-27496413 | MS.gene073869:intron |
| CTTGCTGAAGCGAAAGGCGA+GGG | 0.583282 | 1.2:-27498223 | MS.gene073869:CDS |
| CTTCAGGGAGGCTTGCAGGA+AGG | 0.584384 | 1.2:-27496994 | MS.gene073869:CDS |
| ACATCACCGTTAGACGAGCT+TGG | 0.587602 | 1.2:+27497076 | None:intergenic |
| CGGAATCTGGAAGTCGAGGA+AGG | 0.587888 | 1.2:-27497126 | MS.gene073869:CDS |
| AATTCAGATAGGGACGGTGG+AGG | 0.588433 | 1.2:-27497388 | MS.gene073869:CDS |
| CATAGGGATCAAAGTGATGA+GGG | 0.588741 | 1.2:+27498272 | None:intergenic |
| AGGGAGCTTGGAATTGAGTA+CGG | 0.594494 | 1.2:-27498204 | MS.gene073869:CDS |
| AATCCCATAACTGAATGCAT+TGG | 0.595120 | 1.2:+27497520 | None:intergenic |
| AAGGATGTGTACGAGTGACC+GGG | 0.595446 | 1.2:-27496975 | MS.gene073869:CDS |
| GACTTGCAGACCTCTGAACA+AGG | 0.597590 | 1.2:+27496256 | None:intergenic |
| TATTATCGGTGACGAGAAGA+GGG | 0.598459 | 1.2:-27497230 | MS.gene073869:CDS |
| CAAGCTCAGAAGAAGAATTG+CGG | 0.599403 | 1.2:-27495989 | MS.gene073869:CDS |
| GTGACGATGACTCGAGCTGG+TGG | 0.600417 | 1.2:-27498566 | MS.gene073869:CDS |
| TTTGAACTTCCGGATCCTTG+CGG | 0.601307 | 1.2:+27496046 | None:intergenic |
| CAAAGGGGCATGCACCAGCA+TGG | 0.602581 | 1.2:+27496120 | None:intergenic |
| CAATTGAAAAGATTCTAGAA+TGG | 0.604554 | 1.2:-27498542 | MS.gene073869:CDS |
| CGGTAACCATCCCCGAACCA+GGG | 0.604626 | 1.2:-27496307 | MS.gene073869:CDS |
| GTAGTTGAAACCGAAGAGCA+AGG | 0.606603 | 1.2:+27496342 | None:intergenic |
| AGAGCAAGGGTCATCAGTTG+AGG | 0.607034 | 1.2:+27496356 | None:intergenic |
| ACAACATCCGGATCAGTGAT+CGG | 0.610257 | 1.2:+27497964 | None:intergenic |
| AGTGTTGGCGATTTCAAAGG+GGG | 0.610884 | 1.2:-27497823 | MS.gene073869:CDS |
| GTTGCTGATCAGGTAGCCGT+GGG | 0.610984 | 1.2:-27497697 | MS.gene073869:CDS |
| TTGGCGGAATCTGGAAGTCG+AGG | 0.612913 | 1.2:-27497130 | MS.gene073869:CDS |
| CTGAACTCTCCCCTGGTTCG+GGG | 0.615088 | 1.2:+27496297 | None:intergenic |
| GCATAGGGATCAAAGTGATG+AGG | 0.615167 | 1.2:+27498271 | None:intergenic |
| TCTTGCTGAAGCGAAAGGCG+AGG | 0.616326 | 1.2:-27498224 | MS.gene073869:CDS |
| TAGTTGAAACCGAAGAGCAA+GGG | 0.619553 | 1.2:+27496343 | None:intergenic |
| GTGCATGTTAGATTTGACAT+AGG | 0.621016 | 1.2:-27497055 | MS.gene073869:CDS |
| ACTGTGACGATGACTCGAGC+TGG | 0.623009 | 1.2:-27498569 | MS.gene073869:CDS |
| GGGGACGCCTGAGGTAACGG+AGG | 0.625733 | 1.2:-27497803 | MS.gene073869:CDS |
| AGTCGAGGAAGGATTGAACA+TGG | 0.630620 | 1.2:-27497115 | MS.gene073869:CDS |
| TGGAGACCAAGCTCGTCTAA+CGG | 0.635163 | 1.2:-27497082 | MS.gene073869:CDS |
| TCACTCATGAATTGAATGGG+AGG | 0.638853 | 1.2:-27498005 | MS.gene073869:CDS |
| ACTTATGAGAGAGAAATTGG+AGG | 0.641195 | 1.2:-27497641 | MS.gene073869:CDS |
| TCAGCATGATTTGAAATGTG+TGG | 0.647150 | 1.2:+27498349 | None:intergenic |
| GGTAACCATCCCCGAACCAG+GGG | 0.647398 | 1.2:-27496306 | MS.gene073869:CDS |
| GATTCGATGGTAAGGACAAG+CGG | 0.650665 | 1.2:-27497445 | MS.gene073869:CDS |
| GACAATTCAGATAGGGACGG+TGG | 0.651579 | 1.2:-27497391 | MS.gene073869:CDS |
| ATGGATTTGAAGTTACCGCA+AGG | 0.658657 | 1.2:-27496061 | MS.gene073869:CDS |
| TCATGAGTAATGGAATGGGA+AGG | 0.660080 | 1.2:-27497543 | MS.gene073869:CDS |
| GATGGCGAGTGAGGCTAGAG+CGG | 0.664178 | 1.2:-27497578 | MS.gene073869:CDS |
| TGTTCAGTACCAAATGCTAG+AGG | 0.667794 | 1.2:-27496383 | MS.gene073869:CDS |
| GGTTGCAGAACTGTGCTGTG+TGG | 0.669623 | 1.2:-27498059 | MS.gene073869:CDS |
| AGTTTCCGACAGTTTAACCA+AGG | 0.671343 | 1.2:+27498086 | None:intergenic |
| TTGATAGATGGTAACAATGG+GGG | 0.671786 | 1.2:-27497175 | MS.gene073869:CDS |
| AAGCCTCCCTGAAGTAACTG+AGG | 0.673026 | 1.2:+27497003 | None:intergenic |
| ATGGACAATTCAGATAGGGA+CGG | 0.674602 | 1.2:-27497394 | MS.gene073869:CDS |
| TCAACTACGCTGTTCTACCG+CGG | 0.678877 | 1.2:-27496327 | MS.gene073869:CDS |
| GTGTTGGCGATTTCAAAGGG+GGG | 0.681741 | 1.2:-27497822 | MS.gene073869:CDS |
| TAGTGTTGGCGATTTCAAAG+GGG | 0.690768 | 1.2:-27497824 | MS.gene073869:CDS |
| TGCGGCATGAGAAAGACCCA+CGG | 0.697860 | 1.2:+27497681 | None:intergenic |
| TGGTTCGGGGATGGTTACCG+CGG | 0.700590 | 1.2:+27496310 | None:intergenic |
| AGACCTCAGTTACTTCAGGG+AGG | 0.704562 | 1.2:-27497006 | MS.gene073869:CDS |
| CTTGATAGATGGTAACAATG+GGG | 0.715045 | 1.2:-27497176 | MS.gene073869:CDS |
| CCAAAAGAATAACTTCAAAG+GGG | 0.718508 | 1.2:+27496105 | None:intergenic |
| CACATGAAACCAATGCAGTG+AGG | 0.730416 | 1.2:+27498307 | None:intergenic |
| AGCATGATTTGAAATGTGTG+GGG | 0.747887 | 1.2:+27498351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAACAAATTTGAAAAATA+TGG | + | chr1.2:27498027-27498046 | None:intergenic | 10.0% |
| !! | TTATTGACATTATTCATTAA+AGG | - | chr1.2:27497725-27497744 | MS.gene073869:CDS | 15.0% |
| !! | ATGTCAATAAAGATGAAAAT+CGG | + | chr1.2:27497715-27497734 | None:intergenic | 20.0% |
| !!! | AAAATTGTGATAGAACATTT+TGG | - | chr1.2:27497773-27497792 | MS.gene073869:CDS | 20.0% |
| ! | ATGAAATAAAGAAGCTCAAT+AGG | + | chr1.2:27496097-27496116 | None:intergenic | 25.0% |
| ! | ATTCAATTCATAATGTCTCT+AGG | - | chr1.2:27497991-27498010 | MS.gene073869:CDS | 25.0% |
| ! | CCAATAACATACAAAATCAA+TGG | + | chr1.2:27498144-27498163 | None:intergenic | 25.0% |
| ! | GTAGTTAGAACTATCAAATT+AGG | - | chr1.2:27498087-27498106 | MS.gene073869:CDS | 25.0% |
| ! | TCCAAAAGAATAACTTCAAA+GGG | + | chr1.2:27498467-27498486 | None:intergenic | 25.0% |
| ! | TCTTTGCCTAACTATATTAT+CGG | - | chr1.2:27497324-27497343 | MS.gene073869:CDS | 25.0% |
| ! | TGAAATAAAGAAGCTCAATA+GGG | + | chr1.2:27496096-27496115 | None:intergenic | 25.0% |
| ! | TTCAATTCATAATGTCTCTA+GGG | - | chr1.2:27497992-27498011 | MS.gene073869:CDS | 25.0% |
| !! | AGAACTTGAAAATTTTGAAC+TGG | + | chr1.2:27497802-27497821 | None:intergenic | 25.0% |
| !! | CAATTGAAAAGATTCTAGAA+TGG | - | chr1.2:27496026-27496045 | MS.gene073869:CDS | 25.0% |
| !! | TTAATTTTCCTGCTCTTATT+GGG | - | chr1.2:27495941-27495960 | MS.gene073869:CDS | 25.0% |
| !!! | CCATTGATTTTGTATGTTAT+TGG | - | chr1.2:27498141-27498160 | MS.gene073869:CDS | 25.0% |
| !!! | TTGATCCAACATCAATTTTT+TGG | + | chr1.2:27495895-27495914 | None:intergenic | 25.0% |
| AAAAATCCTGAAGGGAAATT+AGG | - | chr1.2:27498679-27498698 | MS.gene073869:CDS | 30.0% | |
| AACTTGATAGATGGTAACAA+TGG | - | chr1.2:27497390-27497409 | MS.gene073869:CDS | 30.0% | |
| AATCATTCATTGGAATTTCG+TGG | + | chr1.2:27498053-27498072 | None:intergenic | 30.0% | |
| ACTTCAAATCCATCTAAATC+AGG | + | chr1.2:27498500-27498519 | None:intergenic | 30.0% | |
| ACTTGATAGATGGTAACAAT+GGG | - | chr1.2:27497391-27497410 | MS.gene073869:CDS | 30.0% | |
| ATAATGAAACAGAATGAAGC+TGG | - | chr1.2:27496391-27496410 | MS.gene073869:CDS | 30.0% | |
| ATAGCACACTAATCATTCAT+TGG | + | chr1.2:27498063-27498082 | None:intergenic | 30.0% | |
| ATTGCTTTCATTGTACTTTG+TGG | - | chr1.2:27496160-27496179 | MS.gene073869:CDS | 30.0% | |
| CAAATGTTATATAGCTTACC+TGG | + | chr1.2:27497662-27497681 | None:intergenic | 30.0% | |
| CCAAAAGAATAACTTCAAAG+GGG | + | chr1.2:27498466-27498485 | None:intergenic | 30.0% | |
| GAATGAACAGAAACTTATTG+TGG | - | chr1.2:27497101-27497120 | MS.gene073869:CDS | 30.0% | |
| GATGTTGGATCAATGTATAA+AGG | - | chr1.2:27495902-27495921 | MS.gene073869:CDS | 30.0% | |
| GGGAAAAATGTATGCATATT+GGG | - | chr1.2:27498600-27498619 | MS.gene073869:CDS | 30.0% | |
| GTCCAAAAGAATAACTTCAA+AGG | + | chr1.2:27498468-27498487 | None:intergenic | 30.0% | |
| TAACAATACATCCTAGTTTC+TGG | + | chr1.2:27498388-27498407 | None:intergenic | 30.0% | |
| TATTAAAGTTGTTGCTGATC+AGG | - | chr1.2:27496861-27496880 | MS.gene073869:intron | 30.0% | |
| TCAATTCATAATGTCTCTAG+GGG | - | chr1.2:27497993-27498012 | MS.gene073869:CDS | 30.0% | |
| TCTATTAATATCGTCGTTGT+CGG | + | chr1.2:27498345-27498364 | None:intergenic | 30.0% | |
| TGACACATTTGTTTAATAGC+TGG | - | chr1.2:27496185-27496204 | MS.gene073869:CDS | 30.0% | |
| TGCAAACATTCCATTCAAAT+GGG | - | chr1.2:27496123-27496142 | MS.gene073869:CDS | 30.0% | |
| TGTATGCATATTGGGTTTAA+TGG | - | chr1.2:27498608-27498627 | MS.gene073869:CDS | 30.0% | |
| TTAAACTGTCGGAAACTTTA+GGG | - | chr1.2:27496488-27496507 | MS.gene073869:intron | 30.0% | |
| TTGTTTAATAGCTGGACTTA+TGG | - | chr1.2:27496193-27496212 | MS.gene073869:CDS | 30.0% | |
| TTTCAGAAAGTCATGAGTAA+TGG | - | chr1.2:27497015-27497034 | MS.gene073869:CDS | 30.0% | |
| ! | AAAGTCATGAGTAATGGAAT+GGG | - | chr1.2:27497021-27497040 | MS.gene073869:CDS | 30.0% |
| ! | ACCTTTACTTTAAGAAGCAT+AGG | + | chr1.2:27496316-27496335 | None:intergenic | 30.0% |
| ! | ATTGTTACATCTGTTTCTTC+CGG | - | chr1.2:27498401-27498420 | MS.gene073869:CDS | 30.0% |
| ! | CCTTTACTTTAAGAAGCATA+GGG | + | chr1.2:27496315-27496334 | None:intergenic | 30.0% |
| ! | CTTAATTTTCCTGCTCTTAT+TGG | - | chr1.2:27495940-27495959 | MS.gene073869:CDS | 30.0% |
| ! | GATGCCTAATGTTGATAAAA+CGG | - | chr1.2:27496531-27496550 | MS.gene073869:intron | 30.0% |
| ! | TGAGATTTTGTATACTACCT+TGG | - | chr1.2:27496465-27496484 | MS.gene073869:intron | 30.0% |
| !! | TGAAAAAGTACCCATTTGAA+TGG | + | chr1.2:27496136-27496155 | None:intergenic | 30.0% |
| !!! | AATTTCCCTTCAGGATTTTT+TGG | + | chr1.2:27498679-27498698 | None:intergenic | 30.0% |
| !!! | GATTCTTGTGTTTCAAGTTT+TGG | - | chr1.2:27497419-27497438 | MS.gene073869:CDS | 30.0% |
| AACCTCACTCATGAATTGAA+TGG | - | chr1.2:27496559-27496578 | MS.gene073869:intron | 35.0% | |
| AATCCCATAACTGAATGCAT+TGG | + | chr1.2:27497051-27497070 | None:intergenic | 35.0% | |
| ACCTCACTCATGAATTGAAT+GGG | - | chr1.2:27496560-27496579 | MS.gene073869:intron | 35.0% | |
| ACTTATGAGAGAGAAATTGG+AGG | - | chr1.2:27496927-27496946 | MS.gene073869:intron | 35.0% | |
| AGAACTCCAAAAAATCCTGA+AGG | - | chr1.2:27498670-27498689 | MS.gene073869:CDS | 35.0% | |
| ATGCTATGGACAATTCAGAT+AGG | - | chr1.2:27497169-27497188 | MS.gene073869:CDS | 35.0% | |
| ATGGTTAGGAACTTGATAGA+TGG | - | chr1.2:27497381-27497400 | MS.gene073869:CDS | 35.0% | |
| ATGTATAAAGGAACAGCATC+TGG | - | chr1.2:27495914-27495933 | MS.gene073869:CDS | 35.0% | |
| CAATTCATAATGTCTCTAGG+GGG | - | chr1.2:27497994-27498013 | MS.gene073869:CDS | 35.0% | |
| CATATGCAAGAAGATAATCC+AGG | - | chr1.2:27497641-27497660 | MS.gene073869:CDS | 35.0% | |
| CATCTAAATCAGGCAAGTTA+AGG | + | chr1.2:27498490-27498509 | None:intergenic | 35.0% | |
| CCAAAACATTTCATCTCCAA+AGG | + | chr1.2:27497216-27497235 | None:intergenic | 35.0% | |
| CCCTATGCTTCTTAAAGTAA+AGG | - | chr1.2:27496312-27496331 | MS.gene073869:CDS | 35.0% | |
| CGGGAAAAATGTATGCATAT+TGG | - | chr1.2:27498599-27498618 | MS.gene073869:CDS | 35.0% | |
| CTTGATAGATGGTAACAATG+GGG | - | chr1.2:27497392-27497411 | MS.gene073869:CDS | 35.0% | |
| GAAACTTATTGTGGATTCGA+TGG | - | chr1.2:27497110-27497129 | MS.gene073869:CDS | 35.0% | |
| GAACTCCAAAAAATCCTGAA+GGG | - | chr1.2:27498671-27498690 | MS.gene073869:CDS | 35.0% | |
| GAACTTGATGAATGATGCTA+TGG | - | chr1.2:27497155-27497174 | MS.gene073869:CDS | 35.0% | |
| GATCAAAATTCCTTGTTCAG+AGG | - | chr1.2:27498302-27498321 | MS.gene073869:CDS | 35.0% | |
| GCAACTTATGAGAGAGAAAT+TGG | - | chr1.2:27496924-27496943 | MS.gene073869:intron | 35.0% | |
| GCACGTATTGAATCAAGTAT+CGG | + | chr1.2:27497910-27497929 | None:intergenic | 35.0% | |
| GTGCAAACATTCCATTCAAA+TGG | - | chr1.2:27496122-27496141 | MS.gene073869:CDS | 35.0% | |
| GTGCATGTTAGATTTGACAT+AGG | - | chr1.2:27497513-27497532 | MS.gene073869:CDS | 35.0% | |
| GTTAAACTGTCGGAAACTTT+AGG | - | chr1.2:27496487-27496506 | MS.gene073869:intron | 35.0% | |
| TACTACCTTGGTTAAACTGT+CGG | - | chr1.2:27496477-27496496 | MS.gene073869:intron | 35.0% | |
| TCGTCACCGATAATATAGTT+AGG | + | chr1.2:27497333-27497352 | None:intergenic | 35.0% | |
| TGCTATGGACAATTCAGATA+GGG | - | chr1.2:27497170-27497189 | MS.gene073869:CDS | 35.0% | |
| TGTTATTGGCAGTCAATGAA+AGG | - | chr1.2:27498155-27498174 | MS.gene073869:CDS | 35.0% | |
| TTATTGTGGATTCGATGGTA+AGG | - | chr1.2:27497115-27497134 | MS.gene073869:CDS | 35.0% | |
| TTCGAATGCCTTAATCTTGT+TGG | - | chr1.2:27498425-27498444 | MS.gene073869:CDS | 35.0% | |
| TTGAACATGGATATGCAACT+TGG | - | chr1.2:27497466-27497485 | MS.gene073869:CDS | 35.0% | |
| TTGATAGATGGTAACAATGG+GGG | - | chr1.2:27497393-27497412 | MS.gene073869:CDS | 35.0% | |
| ! | AAGATTAAGGCATTCGAATC+CGG | + | chr1.2:27498423-27498442 | None:intergenic | 35.0% |
| ! | AGCATGATTTGAAATGTGTG+GGG | + | chr1.2:27496220-27496239 | None:intergenic | 35.0% |
| ! | CAGCATGATTTGAAATGTGT+GGG | + | chr1.2:27496221-27496240 | None:intergenic | 35.0% |
| ! | GAAAGTCATGAGTAATGGAA+TGG | - | chr1.2:27497020-27497039 | MS.gene073869:CDS | 35.0% |
| ! | GATTTAAGGTTGAGGTTGAT+AGG | - | chr1.2:27497301-27497320 | MS.gene073869:CDS | 35.0% |
| ! | TCAGCATGATTTGAAATGTG+TGG | + | chr1.2:27496222-27496241 | None:intergenic | 35.0% |
| !! | AAGTCTATGGCTTTATGCAA+GGG | - | chr1.2:27497273-27497292 | MS.gene073869:CDS | 35.0% |
| !! | ATCGCCGTTTTATCAACATT+AGG | + | chr1.2:27496538-27496557 | None:intergenic | 35.0% |
| !! | ATTCTAGAATGGCAGAAAGT+CGG | - | chr1.2:27496037-27496056 | MS.gene073869:CDS | 35.0% |
| !! | CCTTTGGAGATGAAATGTTT+TGG | - | chr1.2:27497213-27497232 | MS.gene073869:CDS | 35.0% |
| !! | CTTAACTTGCCTGATTTAGA+TGG | - | chr1.2:27498488-27498507 | MS.gene073869:CDS | 35.0% |
| !! | TTAGTGTTGGCGATTTCAAA+GGG | - | chr1.2:27496743-27496762 | MS.gene073869:intron | 35.0% |
| !! | TTGCGATTCTTCTAGAATTG+CGG | + | chr1.2:27496908-27496927 | None:intergenic | 35.0% |
| !!! | ATGCAAGGGTTTTGGATTTA+AGG | - | chr1.2:27497287-27497306 | MS.gene073869:CDS | 35.0% |
| !!! | CCCCTTTGAAGTTATTCTTT+TGG | - | chr1.2:27498463-27498482 | MS.gene073869:CDS | 35.0% |
| !!! | TCTTGTGTTTCAAGTTTTGG+CGG | - | chr1.2:27497422-27497441 | MS.gene073869:CDS | 35.0% |
| !!! | TTTTCAGGTGATTTTGCACA+TGG | - | chr1.2:27497362-27497381 | MS.gene073869:CDS | 35.0% |
| AAATCGCCAACACTAAGCAT+TGG | + | chr1.2:27496739-27496758 | None:intergenic | 40.0% | |
| AAGCTCAGAAGAAGAATTGC+GGG | - | chr1.2:27498580-27498599 | MS.gene073869:CDS | 40.0% | |
| AAGGCCAATGCATTCAGTTA+TGG | - | chr1.2:27497044-27497063 | MS.gene073869:CDS | 40.0% | |
| AGGCCAATGCATTCAGTTAT+GGG | - | chr1.2:27497045-27497064 | MS.gene073869:CDS | 40.0% | |
| AGTTTCCGACAGTTTAACCA+AGG | + | chr1.2:27496485-27496504 | None:intergenic | 40.0% | |
| ATATTATCGGTGACGAGAAG+AGG | - | chr1.2:27497337-27497356 | MS.gene073869:CDS | 40.0% | |
| ATGGACAATTCAGATAGGGA+CGG | - | chr1.2:27497174-27497193 | MS.gene073869:CDS | 40.0% | |
| CAAGCTCAGAAGAAGAATTG+CGG | - | chr1.2:27498579-27498598 | MS.gene073869:CDS | 40.0% | |
| CAGAAGTTTCTCCAGAAACT+AGG | - | chr1.2:27498374-27498393 | MS.gene073869:CDS | 40.0% | |
| CATAGGGATCAAAGTGATGA+GGG | + | chr1.2:27496299-27496318 | None:intergenic | 40.0% | |
| CTTGCATAAAGCCATAGACT+TGG | + | chr1.2:27497274-27497293 | None:intergenic | 40.0% | |
| GATCAAAGTGATGAGGGTTA+TGG | + | chr1.2:27496293-27496312 | None:intergenic | 40.0% | |
| TAGTTGAAACCGAAGAGCAA+GGG | + | chr1.2:27498228-27498247 | None:intergenic | 40.0% | |
| TATTATCGGTGACGAGAAGA+GGG | - | chr1.2:27497338-27497357 | MS.gene073869:CDS | 40.0% | |
| TCACTCATGAATTGAATGGG+AGG | - | chr1.2:27496563-27496582 | MS.gene073869:intron | 40.0% | |
| TCCCATTCAATTCATGAGTG+AGG | + | chr1.2:27496564-27496583 | None:intergenic | 40.0% | |
| TGTAAGAGTCAAGGGAGATA+AGG | - | chr1.2:27496624-27496643 | MS.gene073869:intron | 40.0% | |
| TGTTCAGTACCAAATGCTAG+AGG | - | chr1.2:27498185-27498204 | MS.gene073869:CDS | 40.0% | |
| TTCTATACCGATCACTGATC+CGG | - | chr1.2:27496597-27496616 | MS.gene073869:intron | 40.0% | |
| TTTGGTACTTCCTAGTGAAG+AGG | - | chr1.2:27496807-27496826 | MS.gene073869:intron | 40.0% | |
| ! | AGGTGATTTTGCACATGGTT+AGG | - | chr1.2:27497367-27497386 | MS.gene073869:CDS | 40.0% |
| ! | AGTTACGGCTTTTGAACTTC+CGG | + | chr1.2:27498535-27498554 | None:intergenic | 40.0% |
| ! | ATGGATTTGAAGTTACCGCA+AGG | - | chr1.2:27498507-27498526 | MS.gene073869:CDS | 40.0% |
| ! | CAAAACAAGTATCGCGTAAC+AGG | + | chr1.2:27496791-27496810 | None:intergenic | 40.0% |
| ! | CTGTTACGCGATACTTGTTT+TGG | - | chr1.2:27496789-27496808 | MS.gene073869:intron | 40.0% |
| ! | TCATGAGTAATGGAATGGGA+AGG | - | chr1.2:27497025-27497044 | MS.gene073869:CDS | 40.0% |
| !! | CAACACTAAGCATTGGCATT+CGG | + | chr1.2:27496732-27496751 | None:intergenic | 40.0% |
| !! | CAAGTCTATGGCTTTATGCA+AGG | - | chr1.2:27497272-27497291 | MS.gene073869:CDS | 40.0% |
| !! | CGTATTGAATCAAGTATCGG+CGG | + | chr1.2:27497907-27497926 | None:intergenic | 40.0% |
| !! | CTTAGTGTTGGCGATTTCAA+AGG | - | chr1.2:27496742-27496761 | MS.gene073869:intron | 40.0% |
| !! | CTTGCAACAGAATTGGCTTT+CGG | + | chr1.2:27498640-27498659 | None:intergenic | 40.0% |
| !! | TAGTGTTGGCGATTTCAAAG+GGG | - | chr1.2:27496744-27496763 | MS.gene073869:intron | 40.0% |
| !!! | ATGGCTTTATGCAAGGGTTT+TGG | - | chr1.2:27497279-27497298 | MS.gene073869:CDS | 40.0% |
| !!! | CAGGATTTTTTGGAGTTCTC+CGG | + | chr1.2:27498669-27498688 | None:intergenic | 40.0% |
| !!! | GGGTTTTGGATTTAAGGTTG+AGG | - | chr1.2:27497293-27497312 | MS.gene073869:CDS | 40.0% |
| !!! | TTTCAAGTTTTGGCGGAATC+TGG | - | chr1.2:27497429-27497448 | MS.gene073869:CDS | 40.0% |
| AACTGATGACCCTTGCTCTT+CGG | - | chr1.2:27498216-27498235 | MS.gene073869:CDS | 45.0% | |
| ACAACATCCGGATCAGTGAT+CGG | + | chr1.2:27496607-27496626 | None:intergenic | 45.0% | |
| AGAGTTCTTGCTGAAGCGAA+AGG | - | chr1.2:27496339-27496358 | MS.gene073869:CDS | 45.0% | |
| AGGGAGCTTGGAATTGAGTA+CGG | - | chr1.2:27496364-27496383 | MS.gene073869:CDS | 45.0% | |
| AGTCGAGGAAGGATTGAACA+TGG | - | chr1.2:27497453-27497472 | MS.gene073869:CDS | 45.0% | |
| AGTGGAGTTTCTGTTGATGC+AGG | - | chr1.2:27496691-27496710 | MS.gene073869:intron | 45.0% | |
| AGTTTCTGTTGATGCAGGAC+CGG | - | chr1.2:27496696-27496715 | MS.gene073869:intron | 45.0% | |
| ATAGATGGTAACAATGGGGG+AGG | - | chr1.2:27497396-27497415 | MS.gene073869:CDS | 45.0% | |
| ATTCTGTTGCAAGGATTCGC+CGG | - | chr1.2:27498647-27498666 | MS.gene073869:CDS | 45.0% | |
| CAAGATCTAGCCTCTTCACT+AGG | + | chr1.2:27496820-27496839 | None:intergenic | 45.0% | |
| CACATGAAACCAATGCAGTG+AGG | + | chr1.2:27496264-27496283 | None:intergenic | 45.0% | |
| CAGAGACCTCAGTTACTTCA+GGG | - | chr1.2:27497559-27497578 | MS.gene073869:CDS | 45.0% | |
| CAGATACACCCAATAAGAGC+AGG | + | chr1.2:27495952-27495971 | None:intergenic | 45.0% | |
| CAGCATGGCCAACAAGATTA+AGG | + | chr1.2:27498436-27498455 | None:intergenic | 45.0% | |
| CCCTTGACTCTTACAACATC+CGG | + | chr1.2:27496619-27496638 | None:intergenic | 45.0% | |
| CCGGATGTTGTAAGAGTCAA+GGG | - | chr1.2:27496616-27496635 | MS.gene073869:intron | 45.0% | |
| CGAAAGCCAATTCTGTTGCA+AGG | - | chr1.2:27498638-27498657 | MS.gene073869:CDS | 45.0% | |
| CGAATGCCAATGCTTAGTGT+TGG | - | chr1.2:27496730-27496749 | MS.gene073869:intron | 45.0% | |
| CTAGTGAAGAGGCTAGATCT+TGG | - | chr1.2:27496818-27496837 | MS.gene073869:intron | 45.0% | |
| CTTAATCTTGTTGGCCATGC+TGG | - | chr1.2:27498434-27498453 | MS.gene073869:CDS | 45.0% | |
| CTTGAAAGTCCTCACTGCAT+TGG | - | chr1.2:27496252-27496271 | MS.gene073869:CDS | 45.0% | |
| GATTCGATGGTAAGGACAAG+CGG | - | chr1.2:27497123-27497142 | MS.gene073869:CDS | 45.0% | |
| GCATAGGGATCAAAGTGATG+AGG | + | chr1.2:27496300-27496319 | None:intergenic | 45.0% | |
| GCGAATCCTTGCAACAGAAT+TGG | + | chr1.2:27498647-27498666 | None:intergenic | 45.0% | |
| GGAAGTTCAAAAGCCGTAAC+TGG | - | chr1.2:27498534-27498553 | MS.gene073869:CDS | 45.0% | |
| GGAGAAAAGGAACGCTATGA+TGG | - | chr1.2:27496972-27496991 | MS.gene073869:CDS | 45.0% | |
| GGTGTATCTGCAACTGCTAA+TGG | - | chr1.2:27495962-27495981 | MS.gene073869:CDS | 45.0% | |
| GTAGTTGAAACCGAAGAGCA+AGG | + | chr1.2:27498229-27498248 | None:intergenic | 45.0% | |
| GTCATCGTCACAGTTGCATT+TGG | + | chr1.2:27495993-27496012 | None:intergenic | 45.0% | |
| TAGATGGTAACAATGGGGGA+GGG | - | chr1.2:27497397-27497416 | MS.gene073869:CDS | 45.0% | |
| TCAAACTTTCCTCGAATGCC+CGG | + | chr1.2:27497614-27497633 | None:intergenic | 45.0% | |
| TCAGAGACCTCAGTTACTTC+AGG | - | chr1.2:27497558-27497577 | MS.gene073869:CDS | 45.0% | |
| TCCGGATGTTGTAAGAGTCA+AGG | - | chr1.2:27496615-27496634 | MS.gene073869:intron | 45.0% | |
| TGAGGAAAGCCTCTAGCATT+TGG | + | chr1.2:27498197-27498216 | None:intergenic | 45.0% | |
| TGGAGGTGGAAGATTTCCTT+TGG | - | chr1.2:27497197-27497216 | MS.gene073869:CDS | 45.0% | |
| TTGAAGTTACCGCAAGGATC+CGG | - | chr1.2:27498513-27498532 | MS.gene073869:CDS | 45.0% | |
| TTTGAACTTCCGGATCCTTG+CGG | + | chr1.2:27498525-27498544 | None:intergenic | 45.0% | |
| ! | GAGCATTGCAACAGGAGAAA+AGG | - | chr1.2:27496959-27496978 | MS.gene073869:CDS | 45.0% |
| ! | TGACGAGAAGAGGGTTTTTC+AGG | - | chr1.2:27497347-27497366 | MS.gene073869:CDS | 45.0% |
| !! | AGTGTTGGCGATTTCAAAGG+GGG | - | chr1.2:27496745-27496764 | MS.gene073869:intron | 45.0% |
| !! | GCCTATCGCTGTTGCTTTAA+CGG | - | chr1.2:27498556-27498575 | MS.gene073869:CDS | 45.0% |
| AAGCCTCCCTGAAGTAACTG+AGG | + | chr1.2:27497568-27497587 | None:intergenic | 50.0% | |
| AAGGATGTGTACGAGTGACC+GGG | - | chr1.2:27497593-27497612 | MS.gene073869:CDS | 50.0% | |
| AATTCAGATAGGGACGGTGG+AGG | - | chr1.2:27497180-27497199 | MS.gene073869:CDS | 50.0% | |
| ACATCACCGTTAGACGAGCT+TGG | + | chr1.2:27497495-27497514 | None:intergenic | 50.0% | |
| AGACCTCAGTTACTTCAGGG+AGG | - | chr1.2:27497562-27497581 | MS.gene073869:CDS | 50.0% | |
| AGAGCAAGGGTCATCAGTTG+AGG | + | chr1.2:27498215-27498234 | None:intergenic | 50.0% | |
| AGCTTGCATCGCCAAGTCTA+TGG | - | chr1.2:27497260-27497279 | MS.gene073869:CDS | 50.0% | |
| CAACAGCGATAGGCCAGTTA+CGG | + | chr1.2:27498550-27498569 | None:intergenic | 50.0% | |
| GAAGGATGTGTACGAGTGAC+CGG | - | chr1.2:27497592-27497611 | MS.gene073869:CDS | 50.0% | |
| GACAATTCAGATAGGGACGG+TGG | - | chr1.2:27497177-27497196 | MS.gene073869:CDS | 50.0% | |
| GACTTGCAGACCTCTGAACA+AGG | + | chr1.2:27498315-27498334 | None:intergenic | 50.0% | |
| GCCGTTAAAGCAACAGCGAT+AGG | + | chr1.2:27498560-27498579 | None:intergenic | 50.0% | |
| TCAACTACGCTGTTCTACCG+CGG | - | chr1.2:27498241-27498260 | MS.gene073869:CDS | 50.0% | |
| TGGAGACCAAGCTCGTCTAA+CGG | - | chr1.2:27497486-27497505 | MS.gene073869:CDS | 50.0% | |
| ! | CAGAGGTCTGCAAGTCTTGT+TGG | - | chr1.2:27498319-27498338 | MS.gene073869:CDS | 50.0% |
| ! | GCGAAATCGAGCATTGCAAC+AGG | - | chr1.2:27496951-27496970 | MS.gene073869:CDS | 50.0% |
| ! | GTGTTGGCGATTTCAAAGGG+GGG | - | chr1.2:27496746-27496765 | MS.gene073869:intron | 50.0% |
| !! | CAAGTATCGGCGGCTAATGA+AGG | + | chr1.2:27497897-27497916 | None:intergenic | 50.0% |
| ACTGTGACGATGACTCGAGC+TGG | - | chr1.2:27495999-27496018 | MS.gene073869:CDS | 55.0% | |
| CGGAATCTGGAAGTCGAGGA+AGG | - | chr1.2:27497442-27497461 | MS.gene073869:CDS | 55.0% | |
| CTCTGAACTCTCCCCTGGTT+CGG | + | chr1.2:27498276-27498295 | None:intergenic | 55.0% | |
| CTTGCTGAAGCGAAAGGCGA+GGG | - | chr1.2:27496345-27496364 | MS.gene073869:CDS | 55.0% | |
| GATGACTCTGAACTCTCCCC+TGG | + | chr1.2:27498281-27498300 | None:intergenic | 55.0% | |
| GGTTGCAGAACTGTGCTGTG+TGG | - | chr1.2:27496509-27496528 | MS.gene073869:intron | 55.0% | |
| GTTACTTCAGGGAGGCTTGC+AGG | - | chr1.2:27497570-27497589 | MS.gene073869:CDS | 55.0% | |
| GTTGCTGATCAGGTAGCCGT+GGG | - | chr1.2:27496871-27496890 | MS.gene073869:intron | 55.0% | |
| TAACAGGCCTCCGTTACCTC+AGG | + | chr1.2:27496775-27496794 | None:intergenic | 55.0% | |
| TCTGAACTCTCCCCTGGTTC+GGG | + | chr1.2:27498275-27498294 | None:intergenic | 55.0% | |
| TCTTGCTGAAGCGAAAGGCG+AGG | - | chr1.2:27496344-27496363 | MS.gene073869:CDS | 55.0% | |
| TGCGGCATGAGAAAGACCCA+CGG | + | chr1.2:27496890-27496909 | None:intergenic | 55.0% | |
| TGTTGCTGATCAGGTAGCCG+TGG | - | chr1.2:27496870-27496889 | MS.gene073869:intron | 55.0% | |
| TTGGCGGAATCTGGAAGTCG+AGG | - | chr1.2:27497438-27497457 | MS.gene073869:CDS | 55.0% | |
| ! | CGGCGATTTTCTGATCGCAG+TGG | - | chr1.2:27496057-27496076 | MS.gene073869:CDS | 55.0% |
| ! | GAACGCTATGATGGCGAGTG+AGG | - | chr1.2:27496981-27497000 | MS.gene073869:CDS | 55.0% |
| AAGCGAAAGGCGAGGGAGCT+TGG | - | chr1.2:27496352-27496371 | MS.gene073869:CDS | 60.0% | |
| CGGTAACCATCCCCGAACCA+GGG | - | chr1.2:27498261-27498280 | MS.gene073869:CDS | 60.0% | |
| CTTCAGGGAGGCTTGCAGGA+AGG | - | chr1.2:27497574-27497593 | MS.gene073869:CDS | 60.0% | |
| GATGGCGAGTGAGGCTAGAG+CGG | - | chr1.2:27496990-27497009 | MS.gene073869:CDS | 60.0% | |
| GGCATTCGGATCGCAGCAAC+CGG | + | chr1.2:27496718-27496737 | None:intergenic | 60.0% | |
| GGTAACCATCCCCGAACCAG+GGG | - | chr1.2:27498262-27498281 | MS.gene073869:CDS | 60.0% | |
| GTGACGATGACTCGAGCTGG+TGG | - | chr1.2:27496002-27496021 | MS.gene073869:CDS | 60.0% | |
| TACGAGTGACCGGGCATTCG+AGG | - | chr1.2:27497602-27497621 | MS.gene073869:CDS | 60.0% | |
| TCAGATAGGGACGGTGGAGG+TGG | - | chr1.2:27497183-27497202 | MS.gene073869:CDS | 60.0% | |
| TTTCAAAGGGGGGACGCCTG+AGG | - | chr1.2:27496756-27496775 | MS.gene073869:intron | 60.0% | |
| ! | CAAAGGGGCATGCACCAGCA+TGG | + | chr1.2:27498451-27498470 | None:intergenic | 60.0% |
| ! | CTGAACTCTCCCCTGGTTCG+GGG | + | chr1.2:27498274-27498293 | None:intergenic | 60.0% |
| ! | CTGCTTGCTGCTGCGAGTAG+TGG | - | chr1.2:27496673-27496692 | MS.gene073869:intron | 60.0% |
| ! | TGGTTCGGGGATGGTTACCG+CGG | + | chr1.2:27498261-27498280 | None:intergenic | 60.0% |
| AGGGGGGACGCCTGAGGTAA+CGG | - | chr1.2:27496762-27496781 | MS.gene073869:intron | 65.0% | |
| GCGGTAACCATCCCCGAACC+AGG | - | chr1.2:27498260-27498279 | MS.gene073869:CDS | 65.0% | |
| !! | ACTCTCCCCTGGTTCGGGGA+TGG | + | chr1.2:27498270-27498289 | None:intergenic | 65.0% |
| ! | GGGGACGCCTGAGGTAACGG+AGG | - | chr1.2:27496765-27496784 | MS.gene073869:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 27495890 | 27498700 | 27495890 | ID=MS.gene073869 |
| chr1.2 | mRNA | 27495890 | 27498700 | 27495890 | ID=MS.gene073869.t1;Parent=MS.gene073869 |
| chr1.2 | exon | 27496928 | 27498700 | 27496928 | ID=MS.gene073869.t1.exon1;Parent=MS.gene073869.t1 |
| chr1.2 | CDS | 27496928 | 27498700 | 27496928 | ID=cds.MS.gene073869.t1;Parent=MS.gene073869.t1 |
| chr1.2 | exon | 27495890 | 27496423 | 27495890 | ID=MS.gene073869.t1.exon2;Parent=MS.gene073869.t1 |
| chr1.2 | CDS | 27495890 | 27496423 | 27495890 | ID=cds.MS.gene073869.t1;Parent=MS.gene073869.t1 |
| Gene Sequence |
| Protein sequence |
