Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63969.t1 | XP_013468658.1 | 98.6 | 759 | 11 | 0 | 1 | 759 | 1 | 759 | 0.00E+00 | 1436.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63969.t1 | Q0WPQ2 | 58.2 | 782 | 291 | 12 | 1 | 758 | 1 | 770 | 1.5e-234 | 813.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63969.t1 | A0A072VX71 | 98.6 | 759 | 11 | 0 | 1 | 759 | 1 | 759 | 0.0e+00 | 1436.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene63969.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050937 | MS.gene63969 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene052015 | MS.gene63969 | 0.816448 | 5.50E-52 | -1.69E-46 |
| MS.gene052503 | MS.gene63969 | -0.805138 | 1.54E-49 | -1.69E-46 |
| MS.gene052823 | MS.gene63969 | -0.806603 | 7.59E-50 | -1.69E-46 |
| MS.gene052825 | MS.gene63969 | -0.817669 | 2.92E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene63969 | -0.810822 | 9.52E-51 | -1.69E-46 |
| MS.gene053421 | MS.gene63969 | 0.888379 | 6.22E-73 | -1.69E-46 |
| MS.gene053480 | MS.gene63969 | -0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene056647 | MS.gene63969 | 0.806935 | 6.46E-50 | -1.69E-46 |
| MS.gene057173 | MS.gene63969 | 0.818706 | 1.70E-52 | -1.69E-46 |
| MS.gene058127 | MS.gene63969 | 0.830669 | 2.58E-55 | -1.69E-46 |
| MS.gene058544 | MS.gene63969 | -0.8031 | 4.09E-49 | -1.69E-46 |
| MS.gene059971 | MS.gene63969 | 0.810132 | 1.34E-50 | -1.69E-46 |
| MS.gene061226 | MS.gene63969 | 0.850513 | 1.62E-60 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74904 | MS.gene63969 | PPI |
| MS.gene63969 | MS.gene058783 | PPI |
| MS.gene63969 | MS.gene22870 | PPI |
| MS.gene63969 | MS.gene005060 | PPI |
| MS.gene63969 | MS.gene07610 | PPI |
| MS.gene63969 | MS.gene024512 | PPI |
| MS.gene63969 | MS.gene74902 | PPI |
| MS.gene63969 | MS.gene025978 | PPI |
| MS.gene63969 | MS.gene005062 | PPI |
| MS.gene050576 | MS.gene63969 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63969.t1 | MTR_1g073840 | 98.551 | 759 | 11 | 0 | 1 | 759 | 1 | 759 | 0.0 | 1541 |
| MS.gene63969.t1 | MTR_1g044210 | 71.278 | 759 | 211 | 6 | 1 | 754 | 1 | 757 | 0.0 | 1067 |
| MS.gene63969.t1 | MTR_7g116330 | 57.625 | 741 | 301 | 6 | 23 | 757 | 28 | 761 | 0.0 | 885 |
| MS.gene63969.t1 | MTR_1g079790 | 56.876 | 749 | 305 | 9 | 19 | 757 | 18 | 758 | 0.0 | 840 |
| MS.gene63969.t1 | MTR_1g079790 | 58.566 | 572 | 225 | 7 | 19 | 581 | 18 | 586 | 0.0 | 653 |
| MS.gene63969.t1 | MTR_4g031150 | 41.970 | 741 | 397 | 18 | 29 | 750 | 54 | 780 | 1.14e-176 | 526 |
| MS.gene63969.t1 | MTR_7g109150 | 40.729 | 631 | 349 | 13 | 29 | 645 | 5 | 624 | 1.60e-129 | 399 |
| MS.gene63969.t1 | MTR_4g134880 | 86.667 | 75 | 9 | 1 | 686 | 759 | 1 | 75 | 2.54e-35 | 128 |
| MS.gene63969.t1 | MTR_8g080770 | 31.579 | 133 | 82 | 3 | 631 | 755 | 728 | 859 | 7.83e-15 | 79.0 |
| MS.gene63969.t1 | MTR_8g080770 | 22.959 | 392 | 244 | 10 | 344 | 690 | 262 | 640 | 1.27e-13 | 75.1 |
| MS.gene63969.t1 | MTR_8g080770 | 31.579 | 133 | 82 | 3 | 631 | 755 | 837 | 968 | 8.80e-15 | 79.0 |
| MS.gene63969.t1 | MTR_8g080770 | 22.959 | 392 | 244 | 10 | 344 | 690 | 371 | 749 | 9.52e-14 | 75.9 |
| MS.gene63969.t1 | MTR_5g022470 | 25.369 | 339 | 209 | 8 | 355 | 665 | 499 | 821 | 1.29e-14 | 78.6 |
| MS.gene63969.t1 | MTR_5g022470 | 25.369 | 339 | 209 | 8 | 355 | 665 | 499 | 821 | 1.84e-14 | 78.2 |
| MS.gene63969.t1 | MTR_3g085130 | 30.534 | 131 | 83 | 3 | 631 | 754 | 692 | 821 | 5.27e-14 | 76.3 |
| MS.gene63969.t1 | MTR_3g085130 | 21.888 | 466 | 307 | 11 | 344 | 758 | 216 | 675 | 2.37e-13 | 74.3 |
| MS.gene63969.t1 | MTR_3g085130 | 30.534 | 131 | 83 | 3 | 631 | 754 | 902 | 1031 | 6.12e-14 | 76.3 |
| MS.gene63969.t1 | MTR_3g085130 | 21.888 | 466 | 307 | 11 | 344 | 758 | 426 | 885 | 7.65e-14 | 76.3 |
| MS.gene63969.t1 | MTR_5g097410 | 21.778 | 450 | 294 | 11 | 344 | 741 | 596 | 1039 | 2.02e-13 | 74.7 |
| MS.gene63969.t1 | MTR_8g075340 | 22.687 | 335 | 224 | 8 | 355 | 665 | 461 | 784 | 2.09e-13 | 74.7 |
| MS.gene63969.t1 | MTR_8g106150 | 22.653 | 490 | 290 | 13 | 344 | 757 | 362 | 838 | 2.49e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63969.t1 | AT3G23150 | 59.847 | 782 | 278 | 13 | 1 | 758 | 1 | 770 | 0.0 | 884 |
| MS.gene63969.t1 | AT3G04580 | 58.043 | 746 | 294 | 12 | 23 | 754 | 21 | 761 | 0.0 | 830 |
| MS.gene63969.t1 | AT3G04580 | 58.043 | 746 | 294 | 12 | 23 | 754 | 21 | 761 | 0.0 | 830 |
| MS.gene63969.t1 | AT3G23150 | 61.937 | 599 | 202 | 10 | 1 | 582 | 1 | 590 | 0.0 | 692 |
| MS.gene63969.t1 | AT1G04310 | 53.859 | 622 | 255 | 10 | 9 | 612 | 16 | 623 | 0.0 | 595 |
| MS.gene63969.t1 | AT1G04310 | 53.859 | 622 | 255 | 10 | 9 | 612 | 16 | 623 | 0.0 | 595 |
| MS.gene63969.t1 | AT1G66340 | 39.685 | 761 | 400 | 18 | 29 | 757 | 4 | 737 | 1.24e-170 | 509 |
| MS.gene63969.t1 | AT2G40940 | 40.981 | 571 | 321 | 10 | 29 | 589 | 4 | 568 | 4.40e-125 | 387 |
| MS.gene63969.t1 | AT5G35750 | 24.524 | 473 | 291 | 15 | 332 | 758 | 565 | 1017 | 6.58e-19 | 92.4 |
| MS.gene63969.t1 | AT5G35750 | 30.263 | 152 | 83 | 3 | 624 | 754 | 1024 | 1173 | 6.71e-13 | 73.2 |
| MS.gene63969.t1 | AT1G27320 | 21.875 | 480 | 307 | 10 | 325 | 757 | 410 | 868 | 1.44e-16 | 85.1 |
| MS.gene63969.t1 | AT1G27320 | 26.966 | 178 | 99 | 5 | 603 | 754 | 856 | 1028 | 5.71e-12 | 70.1 |
| MS.gene63969.t1 | AT2G01830 | 23.978 | 367 | 224 | 8 | 344 | 661 | 440 | 800 | 1.95e-12 | 71.6 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 929 | 1061 | 3.62e-11 | 67.4 |
| MS.gene63969.t1 | AT2G01830 | 23.577 | 369 | 223 | 9 | 344 | 661 | 428 | 788 | 2.14e-12 | 71.6 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 917 | 1049 | 3.43e-11 | 67.4 |
| MS.gene63969.t1 | AT2G01830 | 23.577 | 369 | 223 | 9 | 344 | 661 | 428 | 788 | 2.14e-12 | 71.6 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 917 | 1049 | 3.43e-11 | 67.4 |
| MS.gene63969.t1 | AT2G01830 | 23.577 | 369 | 223 | 9 | 344 | 661 | 428 | 788 | 2.14e-12 | 71.6 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 917 | 1049 | 3.43e-11 | 67.4 |
| MS.gene63969.t1 | AT2G01830 | 23.577 | 369 | 223 | 9 | 344 | 661 | 428 | 788 | 2.14e-12 | 71.6 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 917 | 1049 | 3.43e-11 | 67.4 |
| MS.gene63969.t1 | AT2G17820 | 30.935 | 139 | 95 | 1 | 355 | 492 | 488 | 626 | 2.50e-12 | 71.2 |
| MS.gene63969.t1 | AT2G01830 | 23.577 | 369 | 223 | 9 | 344 | 661 | 451 | 811 | 2.95e-12 | 70.9 |
| MS.gene63969.t1 | AT2G01830 | 29.851 | 134 | 81 | 3 | 630 | 751 | 940 | 1072 | 3.28e-11 | 67.8 |
Find 175 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCCTATGCACTCGATTT+TGG | 0.157778 | 1.4:+60274575 | MS.gene63969:CDS |
| TTTCTGAATGGTTGGACTTA+TGG | 0.204071 | 1.4:+60273724 | MS.gene63969:CDS |
| GTGGACTATTGAGAGTATTT+TGG | 0.244417 | 1.4:+60273552 | MS.gene63969:CDS |
| CCTTTGGAGATAAGGTCTTT+TGG | 0.244781 | 1.4:+60274738 | MS.gene63969:CDS |
| CAAATGCATGTGTGTTTATA+AGG | 0.254306 | 1.4:+60274797 | MS.gene63969:CDS |
| TTCCATTCAAGTCATTCTTT+TGG | 0.259941 | 1.4:+60276023 | MS.gene63969:CDS |
| GGAAGTTTAAAAGCGGAAAT+AGG | 0.304993 | 1.4:+60276094 | MS.gene63969:CDS |
| GCAGTCAAGGCAACAATTAT+AGG | 0.308408 | 1.4:-60276117 | None:intergenic |
| GTCTTTACCAAACCATGTTA+TGG | 0.315997 | 1.4:+60274848 | MS.gene63969:CDS |
| GCGCTTGCTGTTTCCAGTCT+TGG | 0.319928 | 1.4:+60274204 | MS.gene63969:CDS |
| CAGACCTCTCAACATTGAAT+TGG | 0.323833 | 1.4:-60275869 | None:intergenic |
| AGCTCAGTGTCCTCAGGTCC+CGG | 0.332201 | 1.4:+60275092 | MS.gene63969:CDS |
| AATTAAGGTGGTTGCTGATC+AGG | 0.332673 | 1.4:+60274392 | MS.gene63969:CDS |
| TTCTTCTTCGGTTTCAATTA+CGG | 0.333952 | 1.4:+60275791 | MS.gene63969:CDS |
| TGTATGCAGATTGGTGTTAA+TGG | 0.343123 | 1.4:+60276168 | MS.gene63969:CDS |
| CTCATCATCACAATTACATC+TGG | 0.349464 | 1.4:-60273521 | None:intergenic |
| GTGGAGCTTTCGAAAACATT+AGG | 0.351077 | 1.4:+60274018 | MS.gene63969:CDS |
| CATATTGGTCTTGATTCTTC+CGG | 0.355811 | 1.4:+60274329 | MS.gene63969:CDS |
| GTAAATATTAGATTTGAGAT+AGG | 0.360085 | 1.4:+60275041 | MS.gene63969:CDS |
| TCAGGCTTGTTATGCCATAT+TGG | 0.362096 | 1.4:+60274314 | MS.gene63969:CDS |
| TGCTTCTCAAAGTGAAGGTC+AGG | 0.367109 | 1.4:+60273848 | MS.gene63969:CDS |
| TTTGAATGCCTTACTGTCAT+TGG | 0.369155 | 1.4:+60275988 | MS.gene63969:CDS |
| CTCCAAATGCCTGATATAGA+TGG | 0.374320 | 1.4:+60276048 | MS.gene63969:CDS |
| CTTATAAACACACATGCATT+TGG | 0.375755 | 1.4:-60274796 | None:intergenic |
| TCAGGAGCTGGAGATAATTA+AGG | 0.381209 | 1.4:+60274377 | MS.gene63969:CDS |
| TCTTTACCAAACCATGTTAT+GGG | 0.386190 | 1.4:+60274849 | MS.gene63969:CDS |
| ATCCATCTATATCAGGCATT+TGG | 0.388907 | 1.4:-60276050 | None:intergenic |
| GGATGATGGAAGATTTCCTT+TGG | 0.389319 | 1.4:+60274722 | MS.gene63969:CDS |
| ACAACATCTGGATCAGTAAT+CGG | 0.399774 | 1.4:-60274135 | None:intergenic |
| TACTATTCTGTATACTACTT+TGG | 0.402484 | 1.4:+60273996 | MS.gene63969:CDS |
| TGAGGAATACCGTGAGTATA+TGG | 0.405398 | 1.4:-60275757 | None:intergenic |
| GCTCGAACGTCCCTTTCAAA+TGG | 0.406052 | 1.4:+60273653 | MS.gene63969:CDS |
| AAAGCATGACACTTCTTCTT+CGG | 0.410525 | 1.4:+60275779 | MS.gene63969:CDS |
| GGATTGTAACCATGGGGAAG+GGG | 0.412828 | 1.4:+60274923 | MS.gene63969:CDS |
| ACTTCGAATCCATCTATATC+AGG | 0.414647 | 1.4:-60276057 | None:intergenic |
| GATCCTAGTATTTCGAGTTT+CGG | 0.416197 | 1.4:+60274947 | MS.gene63969:CDS |
| GCTCAGTGTCCTCAGGTCCC+GGG | 0.416308 | 1.4:+60275093 | MS.gene63969:CDS |
| TTCCGTGACTTCCGCTTCTA+CGG | 0.417846 | 1.4:+60275963 | MS.gene63969:CDS |
| TCAACTTATGAGAGAGAAGT+TGG | 0.419273 | 1.4:+60274455 | MS.gene63969:CDS |
| CTTTAAGATTCTCACTGCCT+TGG | 0.419423 | 1.4:+60273783 | MS.gene63969:CDS |
| AGTCAAGGGAGGAATGAAAA+AGG | 0.420629 | 1.4:+60274981 | MS.gene63969:CDS |
| GAAGATTTCCTTTGGAGATA+AGG | 0.424573 | 1.4:+60274730 | MS.gene63969:CDS |
| GATTGTAACCATGGGGAAGG+GGG | 0.427873 | 1.4:+60274924 | MS.gene63969:CDS |
| TCCGTGACTTCCGCTTCTAC+GGG | 0.428889 | 1.4:+60275964 | MS.gene63969:CDS |
| GAATGCTATGATGGCAAGCC+AGG | 0.432214 | 1.4:+60274512 | MS.gene63969:CDS |
| CATGTGTGTTTATAAGGGCT+TGG | 0.432309 | 1.4:+60274803 | MS.gene63969:CDS |
| TCGAAGTCGCCGCAAGGATT+CGG | 0.432385 | 1.4:+60276073 | MS.gene63969:CDS |
| ACCTAGATCTTGGAGCAATC+AGG | 0.441634 | 1.4:+60274359 | MS.gene63969:CDS |
| CTGCCGAAACTCGAAATACT+AGG | 0.444425 | 1.4:-60274950 | None:intergenic |
| GCTCCAAGATCTAGGTTCTT+CGG | 0.445823 | 1.4:-60274352 | None:intergenic |
| TTCTTCTGCACTTGCAGTCA+AGG | 0.446455 | 1.4:-60276130 | None:intergenic |
| ACTAGATGAGCTTGGTCTCC+AGG | 0.446804 | 1.4:-60275012 | None:intergenic |
| AGTTGATGCAAGGAAACTTA+TGG | 0.447288 | 1.4:+60275728 | MS.gene63969:intron |
| ATGTGTGTTTATAAGGGCTT+GGG | 0.448667 | 1.4:+60274804 | MS.gene63969:CDS |
| TCATCACCCATAACATGGTT+TGG | 0.448703 | 1.4:-60274855 | None:intergenic |
| TCCTGATTGCTCCAAGATCT+AGG | 0.449928 | 1.4:-60274360 | None:intergenic |
| CGGAAGAATCAAGACCAATA+TGG | 0.450177 | 1.4:-60274328 | None:intergenic |
| GGCATTCGAATGGCAGCAAC+CGG | 0.452555 | 1.4:-60274246 | None:intergenic |
| GCAATTCCTTGCATCAAAAC+CGG | 0.454415 | 1.4:-60276204 | None:intergenic |
| CGGCCGAAGAACCTAGATCT+TGG | 0.454895 | 1.4:+60274349 | MS.gene63969:CDS |
| CTCGAACGTCCCTTTCAAAT+GGG | 0.457846 | 1.4:+60273654 | MS.gene63969:CDS |
| GCGCAATCGAGCTTTGCAAC+TGG | 0.458884 | 1.4:+60274482 | MS.gene63969:CDS |
| AACAGTAGTGATTCTGAAGT+TGG | 0.461479 | 1.4:+60275068 | MS.gene63969:CDS |
| TAATGGAGTAATCCGAAAAC+CGG | 0.467924 | 1.4:+60276185 | MS.gene63969:CDS |
| GCATATGGTTGGGAATCTAC+TGG | 0.475238 | 1.4:+60274902 | MS.gene63969:CDS |
| ACGAAATAAAGCAACTCAAG+AGG | 0.478092 | 1.4:-60273625 | None:intergenic |
| AGAAGAAGTGTCATGCTTTG+AGG | 0.480685 | 1.4:-60275775 | None:intergenic |
| GAATGCTTACTCAAGAGATT+CGG | 0.482071 | 1.4:+60273956 | MS.gene63969:CDS |
| AAGTCATGAGTGATGGTATG+AGG | 0.483265 | 1.4:+60274553 | MS.gene63969:CDS |
| TGGGATCTTGGACGGGAGGT+TGG | 0.484581 | 1.4:+60273895 | MS.gene63969:CDS |
| GTTGGCAGCTCAGTGTCCTC+AGG | 0.485068 | 1.4:+60275086 | MS.gene63969:CDS |
| TCTGAAATGAGTTTCTTGCC+TGG | 0.486268 | 1.4:-60274530 | None:intergenic |
| ATCCAAAAGAATGACTTGAA+TGG | 0.489294 | 1.4:-60276025 | None:intergenic |
| AAATGCATGTGTGTTTATAA+GGG | 0.490040 | 1.4:+60274798 | MS.gene63969:CDS |
| TGGTCTTATTATGAAGCAAA+AGG | 0.490084 | 1.4:+60273915 | MS.gene63969:CDS |
| CATCATTTATCAAGTTTGAA+AGG | 0.492324 | 1.4:-60274680 | None:intergenic |
| TAAATATTAGATTTGAGATA+GGG | 0.495686 | 1.4:+60275042 | MS.gene63969:CDS |
| ATATACCAGTGATAGATATG+AGG | 0.497274 | 1.4:+60275124 | MS.gene63969:CDS |
| ATCTTGGAGCAATCAGGAGC+TGG | 0.497970 | 1.4:+60274365 | MS.gene63969:CDS |
| TCCTTTGCTTCTCAAAGTGA+AGG | 0.498700 | 1.4:+60273843 | MS.gene63969:CDS |
| CTCAGTGTCCTCAGGTCCCG+GGG | 0.500200 | 1.4:+60275094 | MS.gene63969:CDS |
| GACAGCTCTGCAAAGGATGA+TGG | 0.501785 | 1.4:+60274708 | MS.gene63969:CDS |
| TCCCGTAGAAGCGGAAGTCA+CGG | 0.504322 | 1.4:-60275965 | None:intergenic |
| TTTCGAGTTTCGGCAGACGC+TGG | 0.505966 | 1.4:+60274957 | MS.gene63969:CDS |
| TGGATTGTAACCATGGGGAA+GGG | 0.508641 | 1.4:+60274922 | MS.gene63969:CDS |
| TATTCTGTATACTACTTTGG+TGG | 0.509087 | 1.4:+60273999 | MS.gene63969:CDS |
| GAGAGGTCTGCAAGTTCTGT+TGG | 0.509235 | 1.4:+60275882 | MS.gene63969:CDS |
| ATTGTAACCATGGGGAAGGG+GGG | 0.512664 | 1.4:+60274925 | MS.gene63969:CDS |
| TGGTGATTTCTTGATTGCTG+TGG | 0.516847 | 1.4:+60273588 | MS.gene63969:CDS |
| AAGTGCAGAAGAAGATTTGT+GGG | 0.517262 | 1.4:+60276140 | MS.gene63969:CDS |
| CTTACTGTCATTGGACCTGT+TGG | 0.517705 | 1.4:+60275997 | MS.gene63969:CDS |
| ACCTTCACTTTGAGAAGCAA+AGG | 0.521628 | 1.4:-60273844 | None:intergenic |
| CAACAGGTCCAATGACAGTA+AGG | 0.522523 | 1.4:-60275996 | None:intergenic |
| CTCAAGAGGGATTGAGAAGT+AGG | 0.523719 | 1.4:-60273611 | None:intergenic |
| TGTTTCTAGTGACGCAGGAC+CGG | 0.528437 | 1.4:+60274227 | MS.gene63969:CDS |
| GTTGCGTTCTGAAGATTCCC+CGG | 0.528905 | 1.4:-60275842 | None:intergenic |
| AAATTACAAACACGTAACAT+TGG | 0.530189 | 1.4:-60274267 | None:intergenic |
| GGCGAGAAGGAATGCTATGA+TGG | 0.531744 | 1.4:+60274503 | MS.gene63969:CDS |
| TCGGCAGACGCTGGAAGTCA+AGG | 0.534100 | 1.4:+60274966 | MS.gene63969:CDS |
| AAACTTGATAAATGATGCCA+TGG | 0.538571 | 1.4:+60274686 | MS.gene63969:CDS |
| CTCAAAAGAATTCTGATGCA+AGG | 0.538760 | 1.4:+60276234 | MS.gene63969:CDS |
| ATCTACTGGATTGTAACCAT+GGG | 0.542949 | 1.4:+60274916 | MS.gene63969:CDS |
| TTGCGTTCTGAAGATTCCCC+GGG | 0.544742 | 1.4:-60275841 | None:intergenic |
| GAACAAGGACCCATTTGAAA+GGG | 0.546654 | 1.4:-60273663 | None:intergenic |
| TCTGCCCTCATATCTATCAC+TGG | 0.547398 | 1.4:-60275129 | None:intergenic |
| TGAACAAGGACCCATTTGAA+AGG | 0.548158 | 1.4:-60273664 | None:intergenic |
| GCAATAGCCATCTCTGAACC+CGG | 0.551030 | 1.4:+60275823 | MS.gene63969:CDS |
| GGCAGTGAGAATCTTAAAGA+TGG | 0.551039 | 1.4:-60273779 | None:intergenic |
| ACTTGAATGGAAGATCCAAC+AGG | 0.554016 | 1.4:-60276012 | None:intergenic |
| CAAGTGCAGAAGAAGATTTG+TGG | 0.554779 | 1.4:+60276139 | MS.gene63969:CDS |
| TAACAAGCCTGAGTTAGCTC+AGG | 0.557598 | 1.4:-60274303 | None:intergenic |
| ACATCACCACTAGATGAGCT+TGG | 0.559230 | 1.4:-60275020 | None:intergenic |
| CGAAATAAAGCAACTCAAGA+GGG | 0.560282 | 1.4:-60273624 | None:intergenic |
| TTCAGAGATGGCTATTGCAA+TGG | 0.562065 | 1.4:-60275818 | None:intergenic |
| TGTTAATTGCAGTTGATGCA+AGG | 0.562733 | 1.4:+60275718 | MS.gene63969:intron |
| TATTTGCAAGAGGATAGTCC+AGG | 0.567491 | 1.4:+60275163 | MS.gene63969:CDS |
| AATCTACTGGATTGTAACCA+TGG | 0.568873 | 1.4:+60274915 | MS.gene63969:CDS |
| TGGGAAAGATGTATGCAGAT+TGG | 0.570128 | 1.4:+60276159 | MS.gene63969:CDS |
| ATCCTTTGCAGAGCTGTCCA+TGG | 0.572923 | 1.4:-60274703 | None:intergenic |
| GTGATGATGAGAACAGTTTG+TGG | 0.575845 | 1.4:+60273533 | MS.gene63969:CDS |
| CTGGATTGTAACCATGGGGA+AGG | 0.575928 | 1.4:+60274921 | MS.gene63969:CDS |
| AAAGACATGGGATCTTGGAC+GGG | 0.576526 | 1.4:+60273888 | MS.gene63969:CDS |
| AAAAGACATGGGATCTTGGA+CGG | 0.578361 | 1.4:+60273887 | MS.gene63969:CDS |
| GAATGAACAGAAGCTTATTG+TGG | 0.580973 | 1.4:+60274632 | MS.gene63969:CDS |
| CAATAGCCATCTCTGAACCC+GGG | 0.581848 | 1.4:+60275824 | MS.gene63969:CDS |
| TCCTCTCATCACCCATAACA+TGG | 0.582290 | 1.4:-60274860 | None:intergenic |
| GTCACTAGAAACACCAAGAC+TGG | 0.584089 | 1.4:-60274217 | None:intergenic |
| CAAGATCTAGGTTCTTCGGC+CGG | 0.584183 | 1.4:-60274348 | None:intergenic |
| CAGAATAGTATGTCTATCGA+GGG | 0.585211 | 1.4:-60273983 | None:intergenic |
| GAGATGGCTATTGCAATGGA+AGG | 0.587280 | 1.4:-60275814 | None:intergenic |
| CGGCAGACGCTGGAAGTCAA+GGG | 0.589768 | 1.4:+60274967 | MS.gene63969:CDS |
| TGAGCTTTAGTATTTGCAAG+AGG | 0.590203 | 1.4:+60275153 | MS.gene63969:CDS |
| AGGAACACCTGAGCTAACTC+AGG | 0.590712 | 1.4:+60274296 | MS.gene63969:CDS |
| TGCAGCATGCGATAGAGCCA+CGG | 0.591811 | 1.4:-60274418 | None:intergenic |
| CCAAAAGACCTTATCTCCAA+AGG | 0.594431 | 1.4:-60274738 | None:intergenic |
| ACCATGTTATGGGTGATGAG+AGG | 0.595070 | 1.4:+60274859 | MS.gene63969:CDS |
| ATGTTATGGGTGATGAGAGG+AGG | 0.595173 | 1.4:+60274862 | MS.gene63969:CDS |
| GAGCTTTGCAACTGGCGAGA+AGG | 0.595611 | 1.4:+60274490 | MS.gene63969:CDS |
| AGATTCCCCGGGTTCAGAGA+TGG | 0.597080 | 1.4:-60275830 | None:intergenic |
| GCTTCTCAAAGTGAAGGTCA+GGG | 0.597196 | 1.4:+60273849 | MS.gene63969:CDS |
| ATGGATTCGAAGTCGCCGCA+AGG | 0.597554 | 1.4:+60276067 | MS.gene63969:CDS |
| TCACTCATGAATTGAACGCA+AGG | 0.600049 | 1.4:+60274094 | MS.gene63969:CDS |
| GCATTCAAATCCCGTAGAAG+CGG | 0.602716 | 1.4:-60275974 | None:intergenic |
| TATTCCAATTCAATGTTGAG+AGG | 0.606759 | 1.4:+60275865 | MS.gene63969:CDS |
| TGTTATGGGTGATGAGAGGA+GGG | 0.608371 | 1.4:+60274863 | MS.gene63969:CDS |
| ACTGGTATATGTCCTACCCC+CGG | 0.609146 | 1.4:-60275111 | None:intergenic |
| TCATCATCACAATTACATCT+GGG | 0.609736 | 1.4:-60273520 | None:intergenic |
| AAACACACATGCATTTGGCA+AGG | 0.611821 | 1.4:-60274791 | None:intergenic |
| GACATGGGATCTTGGACGGG+AGG | 0.611959 | 1.4:+60273891 | MS.gene63969:CDS |
| TTTCAGAAAGTCATGAGTGA+TGG | 0.612216 | 1.4:+60274546 | MS.gene63969:CDS |
| AGATACACACAAGAGGATAG+AGG | 0.612399 | 1.4:-60273476 | None:intergenic |
| TTTAAACTTCCGAATCCTTG+CGG | 0.614777 | 1.4:-60276082 | None:intergenic |
| ACAGAATAGTATGTCTATCG+AGG | 0.617871 | 1.4:-60273984 | None:intergenic |
| TATACCAGTGATAGATATGA+GGG | 0.618668 | 1.4:+60275125 | MS.gene63969:CDS |
| CTTGGTGTTTCTAGTGACGC+AGG | 0.622071 | 1.4:+60274222 | MS.gene63969:CDS |
| AATCCCAAAATCGAGTGCAT+AGG | 0.622628 | 1.4:-60274579 | None:intergenic |
| ACGTAACATTGGCATTCGAA+TGG | 0.630068 | 1.4:-60274256 | None:intergenic |
| GATGCAAGGAAACTTATGGT+TGG | 0.630539 | 1.4:+60275732 | MS.gene63969:CDS |
| CGCAGTTGCACAAGACACCA+AGG | 0.633662 | 1.4:-60273800 | None:intergenic |
| TGCCATGGACAGCTCTGCAA+AGG | 0.638516 | 1.4:+60274701 | MS.gene63969:CDS |
| TCTTATTATGAAGCAAAAGG+AGG | 0.642117 | 1.4:+60273918 | MS.gene63969:CDS |
| GGTTGCTGATCAGGTTGCCG+TGG | 0.646373 | 1.4:+60274401 | MS.gene63969:CDS |
| TAAAAGCAATGAACTGAACA+AGG | 0.647813 | 1.4:-60273678 | None:intergenic |
| TTGTTGCAGATACACACAAG+AGG | 0.652660 | 1.4:-60273483 | None:intergenic |
| GTTTGCAAAATTGTGCTGTG+TGG | 0.653112 | 1.4:+60274040 | MS.gene63969:CDS |
| TGGAGACCAAGCTCATCTAG+TGG | 0.665111 | 1.4:+60275014 | MS.gene63969:CDS |
| AGGATTCGGAAGTTTAAAAG+CGG | 0.670736 | 1.4:+60276087 | MS.gene63969:CDS |
| GGAGCTGGAGATAATTAAGG+TGG | 0.673703 | 1.4:+60274380 | MS.gene63969:CDS |
| ACCATAAGCTGAAAAGTGTG+AGG | 0.673832 | 1.4:-60273748 | None:intergenic |
| AATAGCCATCTCTGAACCCG+GGG | 0.674767 | 1.4:+60275825 | MS.gene63969:CDS |
| TCATGAGTGATGGTATGAGG+AGG | 0.683443 | 1.4:+60274556 | MS.gene63969:CDS |
| TGGTTGGTACCATATACTCA+CGG | 0.687045 | 1.4:+60275748 | MS.gene63969:CDS |
| CAGACGCTGGAAGTCAAGGG+AGG | 0.709276 | 1.4:+60274970 | MS.gene63969:CDS |
| TCTACTGGATTGTAACCATG+GGG | 0.741326 | 1.4:+60274917 | MS.gene63969:CDS |
| TCAGTGTCCTCAGGTCCCGG+GGG | 0.744374 | 1.4:+60275095 | MS.gene63969:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATTAGATTTGAGATA+GGG | + | chr1.4:60275042-60275061 | MS.gene63969:CDS | 15.0% |
| !! | AAAAATTAACTCAGAATACA+AGG | - | chr1.4:60275660-60275679 | None:intergenic | 20.0% |
| !! | GAAATTAAGTAATCAAATCA+AGG | - | chr1.4:60275689-60275708 | None:intergenic | 20.0% |
| !!! | AGTTACATTGTTTGTTATAT+GGG | + | chr1.4:60275188-60275207 | MS.gene63969:intron | 20.0% |
| !!! | GTAAATATTAGATTTGAGAT+AGG | + | chr1.4:60275041-60275060 | MS.gene63969:CDS | 20.0% |
| !!! | TGTAGTTTTTAATTTTGCTT+AGG | + | chr1.4:60275598-60275617 | MS.gene63969:intron | 20.0% |
| !!! | TTACGTGTTTGTAATTTTAA+AGG | + | chr1.4:60274273-60274292 | MS.gene63969:CDS | 20.0% |
| ! | AAATGCATGTGTGTTTATAA+GGG | + | chr1.4:60274798-60274817 | MS.gene63969:CDS | 25.0% |
| ! | AAATTACAAACACGTAACAT+TGG | - | chr1.4:60274270-60274289 | None:intergenic | 25.0% |
| ! | CATCATTTATCAAGTTTGAA+AGG | - | chr1.4:60274683-60274702 | None:intergenic | 25.0% |
| ! | CCAGATGTTGTAAAAATTAA+GGG | + | chr1.4:60274147-60274166 | MS.gene63969:CDS | 25.0% |
| ! | TACTATTCTGTATACTACTT+TGG | + | chr1.4:60273996-60274015 | MS.gene63969:CDS | 25.0% |
| ! | TCCAGATGTTGTAAAAATTA+AGG | + | chr1.4:60274146-60274165 | MS.gene63969:CDS | 25.0% |
| !!! | ATTGCTTTTATAGTACTATG+TGG | + | chr1.4:60273691-60273710 | MS.gene63969:CDS | 25.0% |
| !!! | GAGTTACATTGTTTGTTATA+TGG | + | chr1.4:60275187-60275206 | MS.gene63969:intron | 25.0% |
| AAACTTGATAAATGATGCCA+TGG | + | chr1.4:60274686-60274705 | MS.gene63969:CDS | 30.0% | |
| AACATATTCCACAGTATTCA+AGG | - | chr1.4:60275397-60275416 | None:intergenic | 30.0% | |
| ATATACCAGTGATAGATATG+AGG | + | chr1.4:60275124-60275143 | MS.gene63969:CDS | 30.0% | |
| ATCCAAAAGAATGACTTGAA+TGG | - | chr1.4:60276028-60276047 | None:intergenic | 30.0% | |
| ATGTCACACAAACAATGAAA+AGG | - | chr1.4:60275316-60275335 | None:intergenic | 30.0% | |
| CAAATGCATGTGTGTTTATA+AGG | + | chr1.4:60274797-60274816 | MS.gene63969:CDS | 30.0% | |
| CTTATAAACACACATGCATT+TGG | - | chr1.4:60274799-60274818 | None:intergenic | 30.0% | |
| GTAAAAATTAAGGGAAGCAA+TGG | + | chr1.4:60274156-60274175 | MS.gene63969:CDS | 30.0% | |
| GTGACATAAATAGCTGAATT+TGG | + | chr1.4:60275329-60275348 | MS.gene63969:intron | 30.0% | |
| TAAAAGCAATGAACTGAACA+AGG | - | chr1.4:60273681-60273700 | None:intergenic | 30.0% | |
| TAATGCGTGTTCGATATATT+TGG | + | chr1.4:60275554-60275573 | MS.gene63969:intron | 30.0% | |
| TATACCAGTGATAGATATGA+GGG | + | chr1.4:60275125-60275144 | MS.gene63969:CDS | 30.0% | |
| TATTCCAATTCAATGTTGAG+AGG | + | chr1.4:60275865-60275884 | MS.gene63969:CDS | 30.0% | |
| TATTCTGTATACTACTTTGG+TGG | + | chr1.4:60273999-60274018 | MS.gene63969:CDS | 30.0% | |
| TCATCATCACAATTACATCT+GGG | - | chr1.4:60273523-60273542 | None:intergenic | 30.0% | |
| TCTTATTATGAAGCAAAAGG+AGG | + | chr1.4:60273918-60273937 | MS.gene63969:CDS | 30.0% | |
| TCTTTACCAAACCATGTTAT+GGG | + | chr1.4:60274849-60274868 | MS.gene63969:CDS | 30.0% | |
| TTCTTCTTCGGTTTCAATTA+CGG | + | chr1.4:60275791-60275810 | MS.gene63969:CDS | 30.0% | |
| ! | ATCACTGTCTTTTCTTCATT+TGG | - | chr1.4:60274069-60274088 | None:intergenic | 30.0% |
| ! | CCCTTAATTTTTACAACATC+TGG | - | chr1.4:60274150-60274169 | None:intergenic | 30.0% |
| ! | TTCCATTCAAGTCATTCTTT+TGG | + | chr1.4:60276023-60276042 | MS.gene63969:CDS | 30.0% |
| !! | CGTGTTTGTAATTTTAAAGG+AGG | + | chr1.4:60274276-60274295 | MS.gene63969:CDS | 30.0% |
| !! | TGGTCTTATTATGAAGCAAA+AGG | + | chr1.4:60273915-60273934 | MS.gene63969:CDS | 30.0% |
| !! | TTGTTTGTTATATGGGTTCA+TGG | + | chr1.4:60275195-60275214 | MS.gene63969:intron | 30.0% |
| !!! | TTTTCAGGTGATTTTGCATA+TGG | + | chr1.4:60274887-60274906 | MS.gene63969:CDS | 30.0% |
| AAAGCATGACACTTCTTCTT+CGG | + | chr1.4:60275779-60275798 | MS.gene63969:CDS | 35.0% | |
| AACAAACAATGTAACTCACC+TGG | - | chr1.4:60275184-60275203 | None:intergenic | 35.0% | |
| AAGAAAAAGACATGGGATCT+TGG | + | chr1.4:60273883-60273902 | MS.gene63969:CDS | 35.0% | |
| AAGTGCAGAAGAAGATTTGT+GGG | + | chr1.4:60276140-60276159 | MS.gene63969:CDS | 35.0% | |
| AATCTACTGGATTGTAACCA+TGG | + | chr1.4:60274915-60274934 | MS.gene63969:CDS | 35.0% | |
| ACAACATCTGGATCAGTAAT+CGG | - | chr1.4:60274138-60274157 | None:intergenic | 35.0% | |
| ACAGAATAGTATGTCTATCG+AGG | - | chr1.4:60273987-60274006 | None:intergenic | 35.0% | |
| ACATCTTGCGAAACTGAATT+TGG | + | chr1.4:60275273-60275292 | MS.gene63969:intron | 35.0% | |
| ACGAAATAAAGCAACTCAAG+AGG | - | chr1.4:60273628-60273647 | None:intergenic | 35.0% | |
| ACTTCGAATCCATCTATATC+AGG | - | chr1.4:60276060-60276079 | None:intergenic | 35.0% | |
| AGGATTCGGAAGTTTAAAAG+CGG | + | chr1.4:60276087-60276106 | MS.gene63969:CDS | 35.0% | |
| AGGATTCTAACTAACATCAC+AGG | - | chr1.4:60275465-60275484 | None:intergenic | 35.0% | |
| ATCCATCTATATCAGGCATT+TGG | - | chr1.4:60276053-60276072 | None:intergenic | 35.0% | |
| ATCTACTGGATTGTAACCAT+GGG | + | chr1.4:60274916-60274935 | MS.gene63969:CDS | 35.0% | |
| ATGTGTGTTTATAAGGGCTT+GGG | + | chr1.4:60274804-60274823 | MS.gene63969:CDS | 35.0% | |
| CAAAAACTGCTTCAGAAACT+AGG | + | chr1.4:60275937-60275956 | MS.gene63969:CDS | 35.0% | |
| CAGAATAGTATGTCTATCGA+GGG | - | chr1.4:60273986-60274005 | None:intergenic | 35.0% | |
| CATGCTCAAGAAAAAGACAT+GGG | + | chr1.4:60273876-60273895 | MS.gene63969:CDS | 35.0% | |
| CGAAATAAAGCAACTCAAGA+GGG | - | chr1.4:60273627-60273646 | None:intergenic | 35.0% | |
| CTCAAAAGAATTCTGATGCA+AGG | + | chr1.4:60276234-60276253 | MS.gene63969:CDS | 35.0% | |
| CTCATCATCACAATTACATC+TGG | - | chr1.4:60273524-60273543 | None:intergenic | 35.0% | |
| GAATGAACAGAAGCTTATTG+TGG | + | chr1.4:60274632-60274651 | MS.gene63969:CDS | 35.0% | |
| GAATGCTTACTCAAGAGATT+CGG | + | chr1.4:60273956-60273975 | MS.gene63969:CDS | 35.0% | |
| GGAAGTTTAAAAGCGGAAAT+AGG | + | chr1.4:60276094-60276113 | MS.gene63969:CDS | 35.0% | |
| GTCTTTACCAAACCATGTTA+TGG | + | chr1.4:60274848-60274867 | MS.gene63969:CDS | 35.0% | |
| TAATGGAGTAATCCGAAAAC+CGG | + | chr1.4:60276185-60276204 | MS.gene63969:CDS | 35.0% | |
| TCAACTTATGAGAGAGAAGT+TGG | + | chr1.4:60274455-60274474 | MS.gene63969:CDS | 35.0% | |
| TCATGCTCAAGAAAAAGACA+TGG | + | chr1.4:60273875-60273894 | MS.gene63969:CDS | 35.0% | |
| TTTAAACTTCCGAATCCTTG+CGG | - | chr1.4:60276085-60276104 | None:intergenic | 35.0% | |
| TTTCAGAAAGTCATGAGTGA+TGG | + | chr1.4:60274546-60274565 | MS.gene63969:CDS | 35.0% | |
| TTTCTGAATGGTTGGACTTA+TGG | + | chr1.4:60273724-60273743 | MS.gene63969:CDS | 35.0% | |
| TTTGAATGCCTTACTGTCAT+TGG | + | chr1.4:60275988-60276007 | MS.gene63969:CDS | 35.0% | |
| ! | AGGTGATTTTGCATATGGTT+GGG | + | chr1.4:60274892-60274911 | MS.gene63969:CDS | 35.0% |
| ! | AGTGTTTTCCTTGAATACTG+TGG | + | chr1.4:60275386-60275405 | MS.gene63969:intron | 35.0% |
| ! | AGTTGATGCAAGGAAACTTA+TGG | + | chr1.4:60275728-60275747 | MS.gene63969:intron | 35.0% |
| ! | ATCTGGAATCGGAATGTTAT+TGG | + | chr1.4:60275506-60275525 | MS.gene63969:intron | 35.0% |
| ! | CATAAGAGCAAATCTGGAAT+CGG | + | chr1.4:60275495-60275514 | MS.gene63969:intron | 35.0% |
| ! | GAAGATTTCCTTTGGAGATA+AGG | + | chr1.4:60274730-60274749 | MS.gene63969:CDS | 35.0% |
| ! | GGATTGACACATTTTCTGAA+TGG | + | chr1.4:60273712-60273731 | MS.gene63969:CDS | 35.0% |
| ! | TCCAGATTTGCTCTTATGAT+GGG | - | chr1.4:60275493-60275512 | None:intergenic | 35.0% |
| ! | TGACACATTTTCTGAATGGT+TGG | + | chr1.4:60273716-60273735 | MS.gene63969:CDS | 35.0% |
| ! | TGAGCTTTAGTATTTGCAAG+AGG | + | chr1.4:60275153-60275172 | MS.gene63969:CDS | 35.0% |
| ! | TGCTCTTATGATGGGAAAAT+AGG | - | chr1.4:60275485-60275504 | None:intergenic | 35.0% |
| ! | TGTTAATTGCAGTTGATGCA+AGG | + | chr1.4:60275718-60275737 | MS.gene63969:intron | 35.0% |
| ! | TTCCAGATTTGCTCTTATGA+TGG | - | chr1.4:60275494-60275513 | None:intergenic | 35.0% |
| !! | AACAGTAGTGATTCTGAAGT+TGG | + | chr1.4:60275068-60275087 | MS.gene63969:CDS | 35.0% |
| !! | CATATTGGTCTTGATTCTTC+CGG | + | chr1.4:60274329-60274348 | MS.gene63969:CDS | 35.0% |
| !! | CTTTGGAGATAAGGTCTTTT+GGG | + | chr1.4:60274739-60274758 | MS.gene63969:CDS | 35.0% |
| !! | GATCCTAGTATTTCGAGTTT+CGG | + | chr1.4:60274947-60274966 | MS.gene63969:CDS | 35.0% |
| !! | GTTATTGGTGTTGTATCTCT+AGG | + | chr1.4:60275521-60275540 | MS.gene63969:intron | 35.0% |
| !! | TGTATGCAGATTGGTGTTAA+TGG | + | chr1.4:60276168-60276187 | MS.gene63969:CDS | 35.0% |
| !!! | ATTTTGGAGTGTCAAAGAGT+TGG | + | chr1.4:60273568-60273587 | MS.gene63969:CDS | 35.0% |
| !!! | GTGGACTATTGAGAGTATTT+TGG | + | chr1.4:60273552-60273571 | MS.gene63969:CDS | 35.0% |
| AAAAGACATGGGATCTTGGA+CGG | + | chr1.4:60273887-60273906 | MS.gene63969:CDS | 40.0% | |
| AAACACACATGCATTTGGCA+AGG | - | chr1.4:60274794-60274813 | None:intergenic | 40.0% | |
| AAGGGAGGAATGAAAAAGGA+TGG | + | chr1.4:60274985-60275004 | MS.gene63969:CDS | 40.0% | |
| AAGTCATGAGTGATGGTATG+AGG | + | chr1.4:60274553-60274572 | MS.gene63969:CDS | 40.0% | |
| AATCCCAAAATCGAGTGCAT+AGG | - | chr1.4:60274582-60274601 | None:intergenic | 40.0% | |
| AATTAAGGTGGTTGCTGATC+AGG | + | chr1.4:60274392-60274411 | MS.gene63969:CDS | 40.0% | |
| ACGTAACATTGGCATTCGAA+TGG | - | chr1.4:60274259-60274278 | None:intergenic | 40.0% | |
| ACTTGAATGGAAGATCCAAC+AGG | - | chr1.4:60276015-60276034 | None:intergenic | 40.0% | |
| AGATACACACAAGAGGATAG+AGG | - | chr1.4:60273479-60273498 | None:intergenic | 40.0% | |
| AGGGAGGAATGAAAAAGGAT+GGG | + | chr1.4:60274986-60275005 | MS.gene63969:CDS | 40.0% | |
| AGTCAAGGGAGGAATGAAAA+AGG | + | chr1.4:60274981-60275000 | MS.gene63969:CDS | 40.0% | |
| CAAGTGCAGAAGAAGATTTG+TGG | + | chr1.4:60276139-60276158 | MS.gene63969:CDS | 40.0% | |
| CAGACCTCTCAACATTGAAT+TGG | - | chr1.4:60275872-60275891 | None:intergenic | 40.0% | |
| CATGTGTGTTTATAAGGGCT+TGG | + | chr1.4:60274803-60274822 | MS.gene63969:CDS | 40.0% | |
| CCAAAAGACCTTATCTCCAA+AGG | - | chr1.4:60274741-60274760 | None:intergenic | 40.0% | |
| CGGAAGAATCAAGACCAATA+TGG | - | chr1.4:60274331-60274350 | None:intergenic | 40.0% | |
| CTCCAAATGCCTGATATAGA+TGG | + | chr1.4:60276048-60276067 | MS.gene63969:CDS | 40.0% | |
| GAACAAGGACCCATTTGAAA+GGG | - | chr1.4:60273666-60273685 | None:intergenic | 40.0% | |
| GATGCAAGGAAACTTATGGT+TGG | + | chr1.4:60275732-60275751 | MS.gene63969:CDS | 40.0% | |
| GCAATTCCTTGCATCAAAAC+CGG | - | chr1.4:60276207-60276226 | None:intergenic | 40.0% | |
| GCAGTCAAGGCAACAATTAT+AGG | - | chr1.4:60276120-60276139 | None:intergenic | 40.0% | |
| GGCAGTGAGAATCTTAAAGA+TGG | - | chr1.4:60273782-60273801 | None:intergenic | 40.0% | |
| GTGGAGCTTTCGAAAACATT+AGG | + | chr1.4:60274018-60274037 | MS.gene63969:CDS | 40.0% | |
| GTTTGCAAAATTGTGCTGTG+TGG | + | chr1.4:60274040-60274059 | MS.gene63969:CDS | 40.0% | |
| TAACAGTACAACGCATAGCT+TGG | - | chr1.4:60275626-60275645 | None:intergenic | 40.0% | |
| TATTTGCAAGAGGATAGTCC+AGG | + | chr1.4:60275163-60275182 | MS.gene63969:CDS | 40.0% | |
| TCACTCATGAATTGAACGCA+AGG | + | chr1.4:60274094-60274113 | MS.gene63969:CDS | 40.0% | |
| TCAGGAGCTGGAGATAATTA+AGG | + | chr1.4:60274377-60274396 | MS.gene63969:CDS | 40.0% | |
| TCATCACCCATAACATGGTT+TGG | - | chr1.4:60274858-60274877 | None:intergenic | 40.0% | |
| TCCCATCATAAGAGCAAATC+TGG | + | chr1.4:60275489-60275508 | MS.gene63969:intron | 40.0% | |
| TCCTTTGCTTCTCAAAGTGA+AGG | + | chr1.4:60273843-60273862 | MS.gene63969:CDS | 40.0% | |
| TCTACTGGATTGTAACCATG+GGG | + | chr1.4:60274917-60274936 | MS.gene63969:CDS | 40.0% | |
| TGAACAAGGACCCATTTGAA+AGG | - | chr1.4:60273667-60273686 | None:intergenic | 40.0% | |
| TGAGGAATACCGTGAGTATA+TGG | - | chr1.4:60275760-60275779 | None:intergenic | 40.0% | |
| TGGGAAAGATGTATGCAGAT+TGG | + | chr1.4:60276159-60276178 | MS.gene63969:CDS | 40.0% | |
| TGGTGATTTCTTGATTGCTG+TGG | + | chr1.4:60273588-60273607 | MS.gene63969:CDS | 40.0% | |
| TTCAGAGATGGCTATTGCAA+TGG | - | chr1.4:60275821-60275840 | None:intergenic | 40.0% | |
| TTGTTGCAGATACACACAAG+AGG | - | chr1.4:60273486-60273505 | None:intergenic | 40.0% | |
| ! | ACCATAAGCTGAAAAGTGTG+AGG | - | chr1.4:60273751-60273770 | None:intergenic | 40.0% |
| ! | ACCTTCACTTTGAGAAGCAA+AGG | - | chr1.4:60273847-60273866 | None:intergenic | 40.0% |
| ! | CAGGTGATTTTGCATATGGT+TGG | + | chr1.4:60274891-60274910 | MS.gene63969:CDS | 40.0% |
| ! | GTGATGATGAGAACAGTTTG+TGG | + | chr1.4:60273533-60273552 | MS.gene63969:CDS | 40.0% |
| ! | TCACACTTTTCAGCTTATGG+TGG | + | chr1.4:60273750-60273769 | MS.gene63969:CDS | 40.0% |
| ! | TCCTCACACTTTTCAGCTTA+TGG | + | chr1.4:60273747-60273766 | MS.gene63969:CDS | 40.0% |
| ! | TCTGAAATGAGTTTCTTGCC+TGG | - | chr1.4:60274533-60274552 | None:intergenic | 40.0% |
| ! | TGGTTGGTACCATATACTCA+CGG | + | chr1.4:60275748-60275767 | MS.gene63969:CDS | 40.0% |
| ! | TTATAAGGGCTTGGGTTTTG+TGG | + | chr1.4:60274812-60274831 | MS.gene63969:CDS | 40.0% |
| !! | AGAAGAAGTGTCATGCTTTG+AGG | - | chr1.4:60275778-60275797 | None:intergenic | 40.0% |
| !! | CCTTTGGAGATAAGGTCTTT+TGG | + | chr1.4:60274738-60274757 | MS.gene63969:CDS | 40.0% |
| !! | CTTGCATCAAAACCGGTTTT+CGG | - | chr1.4:60276200-60276219 | None:intergenic | 40.0% |
| !! | CTTTAAGATTCTCACTGCCT+TGG | + | chr1.4:60273783-60273802 | MS.gene63969:CDS | 40.0% |
| !! | GGATGATGGAAGATTTCCTT+TGG | + | chr1.4:60274722-60274741 | MS.gene63969:CDS | 40.0% |
| !! | TCAGGCTTGTTATGCCATAT+TGG | + | chr1.4:60274314-60274333 | MS.gene63969:CDS | 40.0% |
| AAAGACATGGGATCTTGGAC+GGG | + | chr1.4:60273888-60273907 | MS.gene63969:CDS | 45.0% | |
| ACATCACCACTAGATGAGCT+TGG | - | chr1.4:60275023-60275042 | None:intergenic | 45.0% | |
| ACCATGTTATGGGTGATGAG+AGG | + | chr1.4:60274859-60274878 | MS.gene63969:CDS | 45.0% | |
| ACCTAGATCTTGGAGCAATC+AGG | + | chr1.4:60274359-60274378 | MS.gene63969:CDS | 45.0% | |
| ATGAAAAAGGATGGGCAACC+TGG | + | chr1.4:60274994-60275013 | MS.gene63969:CDS | 45.0% | |
| ATGTTATGGGTGATGAGAGG+AGG | + | chr1.4:60274862-60274881 | MS.gene63969:CDS | 45.0% | |
| CAACAGGTCCAATGACAGTA+AGG | - | chr1.4:60275999-60276018 | None:intergenic | 45.0% | |
| CTCAAGAGGGATTGAGAAGT+AGG | - | chr1.4:60273614-60273633 | None:intergenic | 45.0% | |
| CTCGAACGTCCCTTTCAAAT+GGG | + | chr1.4:60273654-60273673 | MS.gene63969:CDS | 45.0% | |
| CTGCCGAAACTCGAAATACT+AGG | - | chr1.4:60274953-60274972 | None:intergenic | 45.0% | |
| CTTACTGTCATTGGACCTGT+TGG | + | chr1.4:60275997-60276016 | MS.gene63969:CDS | 45.0% | |
| GAGATGGCTATTGCAATGGA+AGG | - | chr1.4:60275817-60275836 | None:intergenic | 45.0% | |
| GCATATGGTTGGGAATCTAC+TGG | + | chr1.4:60274902-60274921 | MS.gene63969:CDS | 45.0% | |
| GCATTCAAATCCCGTAGAAG+CGG | - | chr1.4:60275977-60275996 | None:intergenic | 45.0% | |
| GCTCCAAGATCTAGGTTCTT+CGG | - | chr1.4:60274355-60274374 | None:intergenic | 45.0% | |
| GCTTCTCAAAGTGAAGGTCA+GGG | + | chr1.4:60273849-60273868 | MS.gene63969:CDS | 45.0% | |
| GGAGCTGGAGATAATTAAGG+TGG | + | chr1.4:60274380-60274399 | MS.gene63969:CDS | 45.0% | |
| GTCACTAGAAACACCAAGAC+TGG | - | chr1.4:60274220-60274239 | None:intergenic | 45.0% | |
| TAACAAGCCTGAGTTAGCTC+AGG | - | chr1.4:60274306-60274325 | None:intergenic | 45.0% | |
| TCATGAGTGATGGTATGAGG+AGG | + | chr1.4:60274556-60274575 | MS.gene63969:CDS | 45.0% | |
| TCCTCTCATCACCCATAACA+TGG | - | chr1.4:60274863-60274882 | None:intergenic | 45.0% | |
| TCCTGATTGCTCCAAGATCT+AGG | - | chr1.4:60274363-60274382 | None:intergenic | 45.0% | |
| TCTGCCCTCATATCTATCAC+TGG | - | chr1.4:60275132-60275151 | None:intergenic | 45.0% | |
| TGCTTCTCAAAGTGAAGGTC+AGG | + | chr1.4:60273848-60273867 | MS.gene63969:CDS | 45.0% | |
| TGGATTGTAACCATGGGGAA+GGG | + | chr1.4:60274922-60274941 | MS.gene63969:CDS | 45.0% | |
| TGTTATGGGTGATGAGAGGA+GGG | + | chr1.4:60274863-60274882 | MS.gene63969:CDS | 45.0% | |
| TTCTTCTGCACTTGCAGTCA+AGG | - | chr1.4:60276133-60276152 | None:intergenic | 45.0% | |
| ! | AGGCCTATGCACTCGATTTT+GGG | + | chr1.4:60274576-60274595 | MS.gene63969:CDS | 45.0% |
| ! | GCACGCTGCTTCTTTTATCA+TGG | - | chr1.4:60274772-60274791 | None:intergenic | 45.0% |
| ! | TGATGAGAGGAGGGTTTTTC+AGG | + | chr1.4:60274872-60274891 | MS.gene63969:CDS | 45.0% |
| !! | CGAAAACCGGTTTTGATGCA+AGG | + | chr1.4:60276198-60276217 | MS.gene63969:CDS | 45.0% |
| AATAGCCATCTCTGAACCCG+GGG | + | chr1.4:60275825-60275844 | MS.gene63969:CDS | 50.0% | |
| ACTAGATGAGCTTGGTCTCC+AGG | - | chr1.4:60275015-60275034 | None:intergenic | 50.0% | |
| ACTGGTATATGTCCTACCCC+CGG | - | chr1.4:60275114-60275133 | None:intergenic | 50.0% | |
| AGGAACACCTGAGCTAACTC+AGG | + | chr1.4:60274296-60274315 | MS.gene63969:CDS | 50.0% | |
| ATCCTTTGCAGAGCTGTCCA+TGG | - | chr1.4:60274706-60274725 | None:intergenic | 50.0% | |
| ATCTTGGAGCAATCAGGAGC+TGG | + | chr1.4:60274365-60274384 | MS.gene63969:CDS | 50.0% | |
| ATTGTAACCATGGGGAAGGG+GGG | + | chr1.4:60274925-60274944 | MS.gene63969:CDS | 50.0% | |
| CAAGATCTAGGTTCTTCGGC+CGG | - | chr1.4:60274351-60274370 | None:intergenic | 50.0% | |
| CAATAGCCATCTCTGAACCC+GGG | + | chr1.4:60275824-60275843 | MS.gene63969:CDS | 50.0% | |
| CTGGATTGTAACCATGGGGA+AGG | + | chr1.4:60274921-60274940 | MS.gene63969:CDS | 50.0% | |
| GAATGCTATGATGGCAAGCC+AGG | + | chr1.4:60274512-60274531 | MS.gene63969:CDS | 50.0% | |
| GACAGCTCTGCAAAGGATGA+TGG | + | chr1.4:60274708-60274727 | MS.gene63969:CDS | 50.0% | |
| GAGAGGTCTGCAAGTTCTGT+TGG | + | chr1.4:60275882-60275901 | MS.gene63969:CDS | 50.0% | |
| GATTGTAACCATGGGGAAGG+GGG | + | chr1.4:60274924-60274943 | MS.gene63969:CDS | 50.0% | |
| GCAATAGCCATCTCTGAACC+CGG | + | chr1.4:60275823-60275842 | MS.gene63969:CDS | 50.0% | |
| GCTCGAACGTCCCTTTCAAA+TGG | + | chr1.4:60273653-60273672 | MS.gene63969:CDS | 50.0% | |
| GGATTGTAACCATGGGGAAG+GGG | + | chr1.4:60274923-60274942 | MS.gene63969:CDS | 50.0% | |
| GGCGAGAAGGAATGCTATGA+TGG | + | chr1.4:60274503-60274522 | MS.gene63969:CDS | 50.0% | |
| TGGAGACCAAGCTCATCTAG+TGG | + | chr1.4:60275014-60275033 | MS.gene63969:CDS | 50.0% | |
| TTCCGTGACTTCCGCTTCTA+CGG | + | chr1.4:60275963-60275982 | MS.gene63969:CDS | 50.0% | |
| ! | GAGGCCTATGCACTCGATTT+TGG | + | chr1.4:60274575-60274594 | MS.gene63969:CDS | 50.0% |
| !! | CTTGGTGTTTCTAGTGACGC+AGG | + | chr1.4:60274222-60274241 | MS.gene63969:CDS | 50.0% |
| !! | GTTGCGTTCTGAAGATTCCC+CGG | - | chr1.4:60275845-60275864 | None:intergenic | 50.0% |
| !! | TGTTTCTAGTGACGCAGGAC+CGG | + | chr1.4:60274227-60274246 | MS.gene63969:CDS | 50.0% |
| !! | TTGCGTTCTGAAGATTCCCC+GGG | - | chr1.4:60275844-60275863 | None:intergenic | 50.0% |
| AGATTCCCCGGGTTCAGAGA+TGG | - | chr1.4:60275833-60275852 | None:intergenic | 55.0% | |
| ATGGATTCGAAGTCGCCGCA+AGG | + | chr1.4:60276067-60276086 | MS.gene63969:CDS | 55.0% | |
| CGCAGTTGCACAAGACACCA+AGG | - | chr1.4:60273803-60273822 | None:intergenic | 55.0% | |
| CGGCCGAAGAACCTAGATCT+TGG | + | chr1.4:60274349-60274368 | MS.gene63969:CDS | 55.0% | |
| CTGGTATATGTCCTACCCCC+GGG | - | chr1.4:60275113-60275132 | None:intergenic | 55.0% | |
| GAGCTTTGCAACTGGCGAGA+AGG | + | chr1.4:60274490-60274509 | MS.gene63969:CDS | 55.0% | |
| GCGCAATCGAGCTTTGCAAC+TGG | + | chr1.4:60274482-60274501 | MS.gene63969:CDS | 55.0% | |
| GGCATTCGAATGGCAGCAAC+CGG | - | chr1.4:60274249-60274268 | None:intergenic | 55.0% | |
| TCCCGTAGAAGCGGAAGTCA+CGG | - | chr1.4:60275968-60275987 | None:intergenic | 55.0% | |
| TCCGTGACTTCCGCTTCTAC+GGG | + | chr1.4:60275964-60275983 | MS.gene63969:CDS | 55.0% | |
| TCGAAGTCGCCGCAAGGATT+CGG | + | chr1.4:60276073-60276092 | MS.gene63969:CDS | 55.0% | |
| TGCAGCATGCGATAGAGCCA+CGG | - | chr1.4:60274421-60274440 | None:intergenic | 55.0% | |
| TGCCATGGACAGCTCTGCAA+AGG | + | chr1.4:60274701-60274720 | MS.gene63969:CDS | 55.0% | |
| !! | GCGCTTGCTGTTTCCAGTCT+TGG | + | chr1.4:60274204-60274223 | MS.gene63969:CDS | 55.0% |
| !! | GGGCTTGGGTTTTGTGGTTG+AGG | + | chr1.4:60274818-60274837 | MS.gene63969:CDS | 55.0% |
| !! | TTTCGAGTTTCGGCAGACGC+TGG | + | chr1.4:60274957-60274976 | MS.gene63969:CDS | 55.0% |
| AGCTCAGTGTCCTCAGGTCC+CGG | + | chr1.4:60275092-60275111 | MS.gene63969:CDS | 60.0% | |
| CAGACGCTGGAAGTCAAGGG+AGG | + | chr1.4:60274970-60274989 | MS.gene63969:CDS | 60.0% | |
| CGGCAGACGCTGGAAGTCAA+GGG | + | chr1.4:60274967-60274986 | MS.gene63969:CDS | 60.0% | |
| GACATGGGATCTTGGACGGG+AGG | + | chr1.4:60273891-60273910 | MS.gene63969:CDS | 60.0% | |
| GTTGGCAGCTCAGTGTCCTC+AGG | + | chr1.4:60275086-60275105 | MS.gene63969:CDS | 60.0% | |
| TCGGCAGACGCTGGAAGTCA+AGG | + | chr1.4:60274966-60274985 | MS.gene63969:CDS | 60.0% | |
| TGGGATCTTGGACGGGAGGT+TGG | + | chr1.4:60273895-60273914 | MS.gene63969:CDS | 60.0% | |
| ! | GGTTGCTGATCAGGTTGCCG+TGG | + | chr1.4:60274401-60274420 | MS.gene63969:CDS | 60.0% |
| CTAGGATCCCCCCTTCCCCA+TGG | - | chr1.4:60274935-60274954 | None:intergenic | 65.0% | |
| CTCAGTGTCCTCAGGTCCCG+GGG | + | chr1.4:60275094-60275113 | MS.gene63969:CDS | 65.0% | |
| GCTCAGTGTCCTCAGGTCCC+GGG | + | chr1.4:60275093-60275112 | MS.gene63969:CDS | 65.0% | |
| TCAGTGTCCTCAGGTCCCGG+GGG | + | chr1.4:60275095-60275114 | MS.gene63969:CDS | 65.0% | |
| TGTCCTACCCCCGGGACCTG+AGG | - | chr1.4:60275105-60275124 | None:intergenic | 70.0% | |
| TGTCCTCAGGTCCCGGGGGT+AGG | + | chr1.4:60275099-60275118 | MS.gene63969:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 60273442 | 60276266 | 60273442 | ID=MS.gene63969 |
| chr1.4 | mRNA | 60273442 | 60276266 | 60273442 | ID=MS.gene63969.t1;Parent=MS.gene63969 |
| chr1.4 | exon | 60273442 | 60275184 | 60273442 | ID=MS.gene63969.t1.exon1;Parent=MS.gene63969.t1 |
| chr1.4 | CDS | 60273442 | 60275184 | 60273442 | ID=cds.MS.gene63969.t1;Parent=MS.gene63969.t1 |
| chr1.4 | exon | 60275730 | 60276266 | 60275730 | ID=MS.gene63969.t1.exon2;Parent=MS.gene63969.t1 |
| chr1.4 | CDS | 60275730 | 60276266 | 60275730 | ID=cds.MS.gene63969.t1;Parent=MS.gene63969.t1 |
| Gene Sequence |
| Protein sequence |
