AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32142

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32142.t1 MTR_1g073840 98.419 759 12 0 1 759 1 759 0.0 1539
MS.gene32142.t1 MTR_1g044210 71.146 759 212 6 1 754 1 757 0.0 1065
MS.gene32142.t1 MTR_7g116330 57.625 741 301 6 23 757 28 761 0.0 884
MS.gene32142.t1 MTR_1g079790 56.876 749 305 9 19 757 18 758 0.0 840
MS.gene32142.t1 MTR_1g079790 58.566 572 225 7 19 581 18 586 0.0 653
MS.gene32142.t1 MTR_4g031150 42.105 741 396 18 29 750 54 780 2.28e-177 528
MS.gene32142.t1 MTR_7g109150 40.823 632 347 14 29 645 5 624 1.13e-129 400
MS.gene32142.t1 MTR_4g134880 86.667 75 9 1 686 759 1 75 2.64e-35 128
MS.gene32142.t1 MTR_8g080770 31.579 133 82 3 631 755 728 859 7.70e-15 79.3
MS.gene32142.t1 MTR_8g080770 22.959 392 244 10 344 690 262 640 1.25e-13 75.1
MS.gene32142.t1 MTR_8g080770 31.579 133 82 3 631 755 837 968 8.88e-15 79.0
MS.gene32142.t1 MTR_8g080770 22.959 392 244 10 344 690 371 749 9.28e-14 75.9
MS.gene32142.t1 MTR_5g022470 25.369 339 209 8 355 665 499 821 1.37e-14 78.6
MS.gene32142.t1 MTR_5g022470 25.369 339 209 8 355 665 499 821 1.84e-14 78.2
MS.gene32142.t1 MTR_3g085130 30.534 131 83 3 631 754 692 821 4.83e-14 76.6
MS.gene32142.t1 MTR_3g085130 21.888 466 307 11 344 758 216 675 2.08e-13 74.3
MS.gene32142.t1 MTR_3g085130 30.534 131 83 3 631 754 902 1031 5.91e-14 76.3
MS.gene32142.t1 MTR_3g085130 21.888 466 307 11 344 758 426 885 7.91e-14 75.9
MS.gene32142.t1 MTR_5g097410 21.778 450 294 11 344 741 596 1039 1.78e-13 75.1
MS.gene32142.t1 MTR_8g075340 22.687 335 224 8 355 665 461 784 2.22e-13 74.7
MS.gene32142.t1 MTR_8g106150 22.653 490 290 13 344 757 362 838 2.49e-12 71.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32142.t1 AT3G23150 59.719 782 279 13 1 758 1 770 0.0 882
MS.gene32142.t1 AT3G04580 58.043 746 294 12 23 754 21 761 0.0 830
MS.gene32142.t1 AT3G04580 58.043 746 294 12 23 754 21 761 0.0 830
MS.gene32142.t1 AT3G23150 61.770 599 203 10 1 582 1 590 0.0 690
MS.gene32142.t1 AT1G04310 53.698 622 256 10 9 612 16 623 0.0 593
MS.gene32142.t1 AT1G04310 53.698 622 256 10 9 612 16 623 0.0 593
MS.gene32142.t1 AT1G66340 39.816 761 399 18 29 757 4 737 2.80e-171 511
MS.gene32142.t1 AT2G40940 41.156 571 320 10 29 589 4 568 7.72e-126 389
MS.gene32142.t1 AT5G35750 24.524 473 291 15 332 758 565 1017 6.98e-19 92.4
MS.gene32142.t1 AT5G35750 30.263 152 83 3 624 754 1024 1173 6.88e-13 73.2
MS.gene32142.t1 AT1G27320 21.875 480 307 10 325 757 410 868 1.48e-16 84.7
MS.gene32142.t1 AT1G27320 26.966 178 99 5 603 754 856 1028 5.71e-12 70.1
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 440 800 1.81e-12 71.6
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 929 1061 3.50e-11 67.4
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 428 788 1.98e-12 71.6
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 917 1049 3.40e-11 67.4
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 428 788 1.98e-12 71.6
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 917 1049 3.40e-11 67.4
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 428 788 1.98e-12 71.6
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 917 1049 3.40e-11 67.4
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 428 788 1.98e-12 71.6
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 917 1049 3.40e-11 67.4
MS.gene32142.t1 AT2G17820 30.935 139 95 1 355 492 488 626 2.46e-12 71.2
MS.gene32142.t1 AT2G01830 23.577 369 223 9 344 661 451 811 2.93e-12 70.9
MS.gene32142.t1 AT2G01830 29.851 134 81 3 630 751 940 1072 3.25e-11 67.8

Find 170 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGGCCTATGCACTCGATTT+TGG 0.157778 1.2:+56927574 MS.gene32142:CDS
TTTCTGAATGGTTGGACTTA+TGG 0.204071 1.2:+56926723 MS.gene32142:CDS
GTGGACTATTGACAGTATTT+TGG 0.235288 1.2:+56926551 MS.gene32142:CDS
CCTTTGGAGATAAGGTCTTT+TGG 0.244781 1.2:+56927737 MS.gene32142:CDS
CAAATGCATGTGTGTTTATA+AGG 0.254306 1.2:+56927796 MS.gene32142:CDS
TTCCATTCAAGTCATTCTTT+TGG 0.259941 1.2:+56929022 MS.gene32142:CDS
GCAGTCAACGCAACAATTAT+AGG 0.295254 1.2:-56929116 None:intergenic
GGAAGTTTAAAAGCGGAAAT+AGG 0.304993 1.2:+56929093 MS.gene32142:CDS
TCAGGCTTGTTATGCTATAT+TGG 0.307874 1.2:+56927313 MS.gene32142:CDS
AGCTCAGTGTCCTCAGGTCC+CGG 0.311744 1.2:+56928091 MS.gene32142:CDS
GTCTTTACCAAACCATGTTA+TGG 0.315997 1.2:+56927847 MS.gene32142:CDS
CAGACCTCTCAACATTGAAT+TGG 0.323833 1.2:-56928868 None:intergenic
TTCTTCTTCGGTTTCAATTA+CGG 0.333952 1.2:+56928790 MS.gene32142:CDS
GCACTTGCTGTTTCTAGTCT+TGG 0.337334 1.2:+56927203 MS.gene32142:CDS
TGTATGCAGATTGGTGTTAA+TGG 0.343123 1.2:+56929167 MS.gene32142:CDS
GTGGAGCTTTCGAAAACATT+AGG 0.351077 1.2:+56927017 MS.gene32142:CDS
AATTAAGGTGGTTGCTGATC+AGG 0.358801 1.2:+56927391 MS.gene32142:CDS
GTAAATATTAGATTTGAGAT+AGG 0.360085 1.2:+56928040 MS.gene32142:CDS
TGCTTCTCAAAGTGAAGGTC+AGG 0.367109 1.2:+56926847 MS.gene32142:CDS
TTTGAATGCCTTACTGTCAT+TGG 0.369155 1.2:+56928987 MS.gene32142:CDS
GCTCAGTGTCCTCAGGTCCC+GGG 0.373871 1.2:+56928092 MS.gene32142:CDS
CTCCAAATGCCTGATATAGA+TGG 0.374320 1.2:+56929047 MS.gene32142:CDS
TATATTGGTCTTGATTCTTC+CGG 0.375711 1.2:+56927328 MS.gene32142:CDS
CTTATAAACACACATGCATT+TGG 0.375755 1.2:-56927795 None:intergenic
TCAGGAGCTGGAGATAATTA+AGG 0.381209 1.2:+56927376 MS.gene32142:CDS
TCTTTACCAAACCATGTTAT+GGG 0.386190 1.2:+56927848 MS.gene32142:CDS
ATCCATCTATATCAGGCATT+TGG 0.388907 1.2:-56929049 None:intergenic
GGATGATGGAAGATTTCCTT+TGG 0.389319 1.2:+56927721 MS.gene32142:CDS
ACAACATCTGGATCAGTAAT+CGG 0.399774 1.2:-56927134 None:intergenic
AACAGTAGTGATTCTGAAGT+TGG 0.400331 1.2:+56928067 MS.gene32142:CDS
TACTATTCTGTATACTACTT+TGG 0.402484 1.2:+56926995 MS.gene32142:CDS
TGAGGAATACCGTGAGTATA+TGG 0.405398 1.2:-56928756 None:intergenic
GCTCGAACGTCCCTTTCAAA+TGG 0.406052 1.2:+56926652 MS.gene32142:CDS
AAAGCATGACACTTCTTCTT+CGG 0.410525 1.2:+56928778 MS.gene32142:CDS
GGATTGTAACCATGGGGAAG+GGG 0.412828 1.2:+56927922 MS.gene32142:CDS
ACTTCGAATCCATCTATATC+AGG 0.414647 1.2:-56929056 None:intergenic
GATCCTAGTATTTCGAGTTT+CGG 0.416197 1.2:+56927946 MS.gene32142:CDS
GGCATTCGAATTGCAGCAAC+CGG 0.416375 1.2:-56927245 None:intergenic
TTCCGTGACTTCCGCTTCTA+CGG 0.417846 1.2:+56928962 MS.gene32142:CDS
TCAACTTATGAGAGAGAAGT+TGG 0.419273 1.2:+56927454 MS.gene32142:CDS
CTTTAAGATTCTCACTGCCT+TGG 0.419423 1.2:+56926782 MS.gene32142:CDS
AGTCAAGGGAGGAATGAAAA+AGG 0.420629 1.2:+56927980 MS.gene32142:CDS
GAAGATTTCCTTTGGAGATA+AGG 0.424573 1.2:+56927729 MS.gene32142:CDS
GATTGTAACCATGGGGAAGG+GGG 0.427873 1.2:+56927923 MS.gene32142:CDS
TCCGTGACTTCCGCTTCTAC+GGG 0.428889 1.2:+56928963 MS.gene32142:CDS
GAATGCTATGATGGCAAGCC+AGG 0.432214 1.2:+56927511 MS.gene32142:CDS
CATGTGTGTTTATAAGGGCT+TGG 0.432309 1.2:+56927802 MS.gene32142:CDS
TCGAAGTCGCCGCAAGGATT+CGG 0.432385 1.2:+56929072 MS.gene32142:CDS
ACCTAGATCTTGGAGCAATC+AGG 0.441634 1.2:+56927358 MS.gene32142:CDS
CTGCCGAAACTCGAAATACT+AGG 0.444425 1.2:-56927949 None:intergenic
ACTAGATGAGCTTGGTCTCC+AGG 0.446804 1.2:-56928011 None:intergenic
AGTTGATGCAAGGAAACTTA+TGG 0.447288 1.2:+56928727 MS.gene32142:intron
ATGTGTGTTTATAAGGGCTT+GGG 0.448667 1.2:+56927803 MS.gene32142:CDS
TCATCACCCATAACATGGTT+TGG 0.448703 1.2:-56927854 None:intergenic
TCCTGATTGCTCCAAGATCT+AGG 0.449928 1.2:-56927359 None:intergenic
GCAATTCCTTGCATCAAAAC+CGG 0.454415 1.2:-56929203 None:intergenic
CTCGAACGTCCCTTTCAAAT+GGG 0.457846 1.2:+56926653 MS.gene32142:CDS
GCGCAATCGAGCTTTGCAAC+TGG 0.458884 1.2:+56927481 MS.gene32142:CDS
CGGCTGAAGAACCTAGATCT+TGG 0.462787 1.2:+56927348 MS.gene32142:CDS
TAATGGAGTAATCCGAAAAC+CGG 0.467924 1.2:+56929184 MS.gene32142:CDS
GCATATGGTTGGGAATCTAC+TGG 0.475238 1.2:+56927901 MS.gene32142:CDS
ACGAAATAAAGCAACTCAAG+AGG 0.478092 1.2:-56926624 None:intergenic
AGAAGAAGTGTCATGCTTTG+AGG 0.480685 1.2:-56928774 None:intergenic
GAATGCTTACTCAAGAGATT+CGG 0.482071 1.2:+56926955 MS.gene32142:CDS
AAGTCATGAGTGATGGTATG+AGG 0.483265 1.2:+56927552 MS.gene32142:CDS
TGGGATCTTGGACGGGAGGT+TGG 0.484581 1.2:+56926894 MS.gene32142:CDS
GTTGGGAGCTCAGTGTCCTC+AGG 0.485068 1.2:+56928085 MS.gene32142:CDS
TCTGAAATGAGTTTCTTGCC+TGG 0.486268 1.2:-56927529 None:intergenic
ATCCAAAAGAATGACTTGAA+TGG 0.489294 1.2:-56929024 None:intergenic
AAATGCATGTGTGTTTATAA+GGG 0.490040 1.2:+56927797 MS.gene32142:CDS
TGGTCTTATTATGAAGCAAA+AGG 0.490084 1.2:+56926914 MS.gene32142:CDS
CATCATTTATCAAGTTTGAA+AGG 0.492324 1.2:-56927679 None:intergenic
TAAATATTAGATTTGAGATA+GGG 0.495686 1.2:+56928041 MS.gene32142:CDS
ATATACCAGTGATAGATATG+AGG 0.497274 1.2:+56928123 MS.gene32142:CDS
ATCTTGGAGCAATCAGGAGC+TGG 0.497970 1.2:+56927364 MS.gene32142:CDS
TCCTTTGCTTCTCAAAGTGA+AGG 0.498700 1.2:+56926842 MS.gene32142:CDS
CTCAGTGTCCTCAGGTCCCG+GGG 0.500200 1.2:+56928093 MS.gene32142:CDS
TCATCATCACAATTACATCT+AGG 0.500845 1.2:-56926519 None:intergenic
GACAGCTCTGCAAAGGATGA+TGG 0.501785 1.2:+56927707 MS.gene32142:CDS
TCCCGTAGAAGCGGAAGTCA+CGG 0.504322 1.2:-56928964 None:intergenic
TTTCGAGTTTCGGCAGACGC+TGG 0.505966 1.2:+56927956 MS.gene32142:CDS
TGGATTGTAACCATGGGGAA+GGG 0.508641 1.2:+56927921 MS.gene32142:CDS
TATTCTGTATACTACTTTGG+TGG 0.509087 1.2:+56926998 MS.gene32142:CDS
GAGAGGTCTGCAAGTTCTGT+TGG 0.509235 1.2:+56928881 MS.gene32142:CDS
ATTGTAACCATGGGGAAGGG+GGG 0.512664 1.2:+56927924 MS.gene32142:CDS
TGGTGATTTCTTGATTGCTG+TGG 0.516847 1.2:+56926587 MS.gene32142:CDS
AAGTGCAGAAGAAGATTTGT+GGG 0.517262 1.2:+56929139 MS.gene32142:CDS
CTTACTGTCATTGGACCTGT+TGG 0.517705 1.2:+56928996 MS.gene32142:CDS
ACAGTAGTGATTCTGAAGTT+GGG 0.521325 1.2:+56928068 MS.gene32142:CDS
ACCTTCACTTTGAGAAGCAA+AGG 0.521628 1.2:-56926843 None:intergenic
CAACAGGTCCAATGACAGTA+AGG 0.522523 1.2:-56928995 None:intergenic
CTCAAGAGGGATTGAGAAGT+AGG 0.523719 1.2:-56926610 None:intergenic
TGTTTCTAGTGACGCAGGAC+CGG 0.528437 1.2:+56927226 MS.gene32142:CDS
GTTGCGTTCTGAAGATTCCC+CGG 0.528905 1.2:-56928841 None:intergenic
AAATTACAAACACGTAACAT+TGG 0.530189 1.2:-56927266 None:intergenic
GGCGAGAAGGAATGCTATGA+TGG 0.531744 1.2:+56927502 MS.gene32142:CDS
TCGGCAGACGCTGGAAGTCA+AGG 0.534100 1.2:+56927965 MS.gene32142:CDS
AAACTTGATAAATGATGCCA+TGG 0.538571 1.2:+56927685 MS.gene32142:CDS
CTCAAAAGAATTCTGATGCA+AGG 0.538760 1.2:+56929233 MS.gene32142:CDS
ATCTACTGGATTGTAACCAT+GGG 0.542949 1.2:+56927915 MS.gene32142:CDS
TTGCGTTCTGAAGATTCCCC+GGG 0.544742 1.2:-56928840 None:intergenic
GAACAAGGACCCATTTGAAA+GGG 0.546654 1.2:-56926662 None:intergenic
TCTGCCCTCATATCTATCAC+TGG 0.547398 1.2:-56928128 None:intergenic
TGAACAAGGACCCATTTGAA+AGG 0.548158 1.2:-56926663 None:intergenic
GCAATAGCCATCTCTGAACC+CGG 0.551030 1.2:+56928822 MS.gene32142:CDS
GGCAGTGAGAATCTTAAAGA+TGG 0.551039 1.2:-56926778 None:intergenic
ACTTGAATGGAAGATCCAAC+AGG 0.554016 1.2:-56929011 None:intergenic
CAAGTGCAGAAGAAGATTTG+TGG 0.554779 1.2:+56929138 MS.gene32142:CDS
TAACAAGCCTGAGTTAGCTC+AGG 0.557598 1.2:-56927302 None:intergenic
ACATCACCACTAGATGAGCT+TGG 0.559230 1.2:-56928019 None:intergenic
CGAAATAAAGCAACTCAAGA+GGG 0.560282 1.2:-56926623 None:intergenic
TTCAGAGATGGCTATTGCAA+TGG 0.562065 1.2:-56928817 None:intergenic
TGTTAATTGCAGTTGATGCA+AGG 0.562733 1.2:+56928717 MS.gene32142:intron
TATTTGCAAGAGGATAGTCC+AGG 0.567491 1.2:+56928162 MS.gene32142:CDS
AATCTACTGGATTGTAACCA+TGG 0.568873 1.2:+56927914 MS.gene32142:CDS
TGGGAAAGATGTATGCAGAT+TGG 0.570128 1.2:+56929158 MS.gene32142:CDS
ATCCTTTGCAGAGCTGTCCA+TGG 0.572923 1.2:-56927702 None:intergenic
GTGATGATGAGAACAGTTTG+TGG 0.575845 1.2:+56926532 MS.gene32142:CDS
CTGGATTGTAACCATGGGGA+AGG 0.575928 1.2:+56927920 MS.gene32142:CDS
AAAGACATGGGATCTTGGAC+GGG 0.576526 1.2:+56926887 MS.gene32142:CDS
AAAAGACATGGGATCTTGGA+CGG 0.578361 1.2:+56926886 MS.gene32142:CDS
GAATGAACAGAAGCTTATTG+TGG 0.580973 1.2:+56927631 MS.gene32142:CDS
CAATAGCCATCTCTGAACCC+GGG 0.581848 1.2:+56928823 MS.gene32142:CDS
TCCTCTCATCACCCATAACA+TGG 0.582290 1.2:-56927859 None:intergenic
CAGAATAGTATGTCTATCGA+GGG 0.585211 1.2:-56926982 None:intergenic
CAAGATCTAGGTTCTTCAGC+CGG 0.586203 1.2:-56927347 None:intergenic
GAGATGGCTATTGCAATGGA+AGG 0.587280 1.2:-56928813 None:intergenic
CGGCAGACGCTGGAAGTCAA+GGG 0.589768 1.2:+56927966 MS.gene32142:CDS
TGAGCTTTAGTATTTGCAAG+AGG 0.590203 1.2:+56928152 MS.gene32142:CDS
AGGAACACCTGAGCTAACTC+AGG 0.590712 1.2:+56927295 MS.gene32142:CDS
CCAAAAGACCTTATCTCCAA+AGG 0.594431 1.2:-56927737 None:intergenic
ACCATGTTATGGGTGATGAG+AGG 0.595070 1.2:+56927858 MS.gene32142:CDS
ATGTTATGGGTGATGAGAGG+AGG 0.595173 1.2:+56927861 MS.gene32142:CDS
GAGCTTTGCAACTGGCGAGA+AGG 0.595611 1.2:+56927489 MS.gene32142:CDS
AGATTCCCCGGGTTCAGAGA+TGG 0.597080 1.2:-56928829 None:intergenic
GCTTCTCAAAGTGAAGGTCA+GGG 0.597196 1.2:+56926848 MS.gene32142:CDS
ATGGATTCGAAGTCGCCGCA+AGG 0.597554 1.2:+56929066 MS.gene32142:CDS
TCACTCATGAATTGAACGCA+AGG 0.600049 1.2:+56927093 MS.gene32142:CDS
GCATTCAAATCCCGTAGAAG+CGG 0.602716 1.2:-56928973 None:intergenic
TGCAGCATGCGATAGAGCCA+CGG 0.605140 1.2:-56927417 None:intergenic
TATTCCAATTCAATGTTGAG+AGG 0.606759 1.2:+56928864 MS.gene32142:CDS
TGTTATGGGTGATGAGAGGA+GGG 0.608371 1.2:+56927862 MS.gene32142:CDS
ACTGGTATATGTCCTACCCC+CGG 0.609146 1.2:-56928110 None:intergenic
AAACACACATGCATTTGGCA+AGG 0.611821 1.2:-56927790 None:intergenic
GACATGGGATCTTGGACGGG+AGG 0.611959 1.2:+56926890 MS.gene32142:CDS
TTTCAGAAAGTCATGAGTGA+TGG 0.612216 1.2:+56927545 MS.gene32142:CDS
AGATACACACAAGAGGATAG+AGG 0.612399 1.2:-56926475 None:intergenic
TTTAAACTTCCGAATCCTTG+CGG 0.614777 1.2:-56929081 None:intergenic
ACAGAATAGTATGTCTATCG+AGG 0.617871 1.2:-56926983 None:intergenic
TATACCAGTGATAGATATGA+GGG 0.618668 1.2:+56928124 MS.gene32142:CDS
CTTGGTGTTTCTAGTGACGC+AGG 0.622071 1.2:+56927221 MS.gene32142:CDS
AATCCCAAAATCGAGTGCAT+AGG 0.622628 1.2:-56927578 None:intergenic
GATGCAAGGAAACTTATGGT+TGG 0.630539 1.2:+56928731 MS.gene32142:CDS
CGCAGTTGCACAAGACACCA+AGG 0.633662 1.2:-56926799 None:intergenic
TGCCATGGACAGCTCTGCAA+AGG 0.638516 1.2:+56927700 MS.gene32142:CDS
TCTTATTATGAAGCAAAAGG+AGG 0.642117 1.2:+56926917 MS.gene32142:CDS
TAAAAGCAATGAACTGAACA+AGG 0.647813 1.2:-56926677 None:intergenic
TTGTTGCAGATACACACAAG+AGG 0.652660 1.2:-56926482 None:intergenic
GTTTGCAAAATTGTGCTGTG+TGG 0.653112 1.2:+56927039 MS.gene32142:CDS
TGGAGACCAAGCTCATCTAG+TGG 0.665111 1.2:+56928013 MS.gene32142:CDS
AGGATTCGGAAGTTTAAAAG+CGG 0.670736 1.2:+56929086 MS.gene32142:CDS
GGTTGCTGATCAGGTCGCCG+TGG 0.672444 1.2:+56927400 MS.gene32142:CDS
GGAGCTGGAGATAATTAAGG+TGG 0.673703 1.2:+56927379 MS.gene32142:CDS
ACCATAAGCTGAAAAGTGTG+AGG 0.673832 1.2:-56926747 None:intergenic
AATAGCCATCTCTGAACCCG+GGG 0.674767 1.2:+56928824 MS.gene32142:CDS
TCATGAGTGATGGTATGAGG+AGG 0.683443 1.2:+56927555 MS.gene32142:CDS
TGGTTGGTACCATATACTCA+CGG 0.687045 1.2:+56928747 MS.gene32142:CDS
CAGACGCTGGAAGTCAAGGG+AGG 0.709276 1.2:+56927969 MS.gene32142:CDS
TCTACTGGATTGTAACCATG+GGG 0.741326 1.2:+56927916 MS.gene32142:CDS
TCAGTGTCCTCAGGTCCCGG+GGG 0.744374 1.2:+56928094 MS.gene32142:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATTAGATTTGAGATA+GGG + chr1.2:56928041-56928060 MS.gene32142:CDS 15.0%
!! AAAAATTAACTCAGAATACA+AGG - chr1.2:56928659-56928678 None:intergenic 20.0%
!! GAAATTAAGTAATCAAATCA+AGG - chr1.2:56928688-56928707 None:intergenic 20.0%
!!! AGTTACATTGTTTGTTATAT+GGG + chr1.2:56928187-56928206 MS.gene32142:intron 20.0%
!!! GTAAATATTAGATTTGAGAT+AGG + chr1.2:56928040-56928059 MS.gene32142:CDS 20.0%
!!! TGTAGTTTTTAATTTTGCTT+AGG + chr1.2:56928597-56928616 MS.gene32142:intron 20.0%
!!! TTACGTGTTTGTAATTTTAA+AGG + chr1.2:56927272-56927291 MS.gene32142:CDS 20.0%
! AAATGCATGTGTGTTTATAA+GGG + chr1.2:56927797-56927816 MS.gene32142:CDS 25.0%
! AAATTACAAACACGTAACAT+TGG - chr1.2:56927269-56927288 None:intergenic 25.0%
! CATCATTTATCAAGTTTGAA+AGG - chr1.2:56927682-56927701 None:intergenic 25.0%
! CCAGATGTTGTAAAAATTAA+GGG + chr1.2:56927146-56927165 MS.gene32142:CDS 25.0%
! TACTATTCTGTATACTACTT+TGG + chr1.2:56926995-56927014 MS.gene32142:CDS 25.0%
! TCCAGATGTTGTAAAAATTA+AGG + chr1.2:56927145-56927164 MS.gene32142:CDS 25.0%
!!! ATTGCTTTTATAGTACTATG+TGG + chr1.2:56926690-56926709 MS.gene32142:CDS 25.0%
!!! GAGTTACATTGTTTGTTATA+TGG + chr1.2:56928186-56928205 MS.gene32142:intron 25.0%
!!! TTGTTTGTTATATGGGTTAA+TGG + chr1.2:56928194-56928213 MS.gene32142:intron 25.0%
AAACTTGATAAATGATGCCA+TGG + chr1.2:56927685-56927704 MS.gene32142:CDS 30.0%
AACATATTCCACAGTATTCA+AGG - chr1.2:56928396-56928415 None:intergenic 30.0%
ATATACCAGTGATAGATATG+AGG + chr1.2:56928123-56928142 MS.gene32142:CDS 30.0%
ATCCAAAAGAATGACTTGAA+TGG - chr1.2:56929027-56929046 None:intergenic 30.0%
ATGTCACACAAACAATGAAA+AGG - chr1.2:56928315-56928334 None:intergenic 30.0%
CAAATGCATGTGTGTTTATA+AGG + chr1.2:56927796-56927815 MS.gene32142:CDS 30.0%
CTTATAAACACACATGCATT+TGG - chr1.2:56927798-56927817 None:intergenic 30.0%
GTAAAAATTAAGGGAAGCAA+TGG + chr1.2:56927155-56927174 MS.gene32142:CDS 30.0%
GTGACATAAATAGCTGAATT+TGG + chr1.2:56928328-56928347 MS.gene32142:intron 30.0%
TAAAAGCAATGAACTGAACA+AGG - chr1.2:56926680-56926699 None:intergenic 30.0%
TAATGCGTGTTCGATATATT+TGG + chr1.2:56928553-56928572 MS.gene32142:intron 30.0%
TATACCAGTGATAGATATGA+GGG + chr1.2:56928124-56928143 MS.gene32142:CDS 30.0%
TATTCCAATTCAATGTTGAG+AGG + chr1.2:56928864-56928883 MS.gene32142:CDS 30.0%
TATTCTGTATACTACTTTGG+TGG + chr1.2:56926998-56927017 MS.gene32142:CDS 30.0%
TCATCATCACAATTACATCT+AGG - chr1.2:56926522-56926541 None:intergenic 30.0%
TCTTATTATGAAGCAAAAGG+AGG + chr1.2:56926917-56926936 MS.gene32142:CDS 30.0%
TCTTTACCAAACCATGTTAT+GGG + chr1.2:56927848-56927867 MS.gene32142:CDS 30.0%
TTCTTCTTCGGTTTCAATTA+CGG + chr1.2:56928790-56928809 MS.gene32142:CDS 30.0%
! ATCACTGTCTTTTCTTCATT+TGG - chr1.2:56927068-56927087 None:intergenic 30.0%
! CCCTTAATTTTTACAACATC+TGG - chr1.2:56927149-56927168 None:intergenic 30.0%
! TTCCATTCAAGTCATTCTTT+TGG + chr1.2:56929022-56929041 MS.gene32142:CDS 30.0%
!! CGTGTTTGTAATTTTAAAGG+AGG + chr1.2:56927275-56927294 MS.gene32142:CDS 30.0%
!! TATATTGGTCTTGATTCTTC+CGG + chr1.2:56927328-56927347 MS.gene32142:CDS 30.0%
!! TGGTCTTATTATGAAGCAAA+AGG + chr1.2:56926914-56926933 MS.gene32142:CDS 30.0%
!!! TTTTCAGGTGATTTTGCATA+TGG + chr1.2:56927886-56927905 MS.gene32142:CDS 30.0%
AAAGCATGACACTTCTTCTT+CGG + chr1.2:56928778-56928797 MS.gene32142:CDS 35.0%
AACAAACAATGTAACTCACC+TGG - chr1.2:56928183-56928202 None:intergenic 35.0%
AAGAAAAAGACATGGGATCT+TGG + chr1.2:56926882-56926901 MS.gene32142:CDS 35.0%
AAGTGCAGAAGAAGATTTGT+GGG + chr1.2:56929139-56929158 MS.gene32142:CDS 35.0%
AATCTACTGGATTGTAACCA+TGG + chr1.2:56927914-56927933 MS.gene32142:CDS 35.0%
ACAACATCTGGATCAGTAAT+CGG - chr1.2:56927137-56927156 None:intergenic 35.0%
ACAGAATAGTATGTCTATCG+AGG - chr1.2:56926986-56927005 None:intergenic 35.0%
ACATCTTGCGAAACTGAATT+TGG + chr1.2:56928272-56928291 MS.gene32142:intron 35.0%
ACGAAATAAAGCAACTCAAG+AGG - chr1.2:56926627-56926646 None:intergenic 35.0%
ACTTCGAATCCATCTATATC+AGG - chr1.2:56929059-56929078 None:intergenic 35.0%
AGGATTCGGAAGTTTAAAAG+CGG + chr1.2:56929086-56929105 MS.gene32142:CDS 35.0%
AGGATTCTAACTAACATCAC+AGG - chr1.2:56928464-56928483 None:intergenic 35.0%
ATCCATCTATATCAGGCATT+TGG - chr1.2:56929052-56929071 None:intergenic 35.0%
ATCTACTGGATTGTAACCAT+GGG + chr1.2:56927915-56927934 MS.gene32142:CDS 35.0%
ATGTGTGTTTATAAGGGCTT+GGG + chr1.2:56927803-56927822 MS.gene32142:CDS 35.0%
CAAAAACTGCTTCAGAAACT+AGG + chr1.2:56928936-56928955 MS.gene32142:CDS 35.0%
CAGAATAGTATGTCTATCGA+GGG - chr1.2:56926985-56927004 None:intergenic 35.0%
CATGCTCAAGAAAAAGACAT+GGG + chr1.2:56926875-56926894 MS.gene32142:CDS 35.0%
CGAAATAAAGCAACTCAAGA+GGG - chr1.2:56926626-56926645 None:intergenic 35.0%
CTCAAAAGAATTCTGATGCA+AGG + chr1.2:56929233-56929252 MS.gene32142:CDS 35.0%
GAATGAACAGAAGCTTATTG+TGG + chr1.2:56927631-56927650 MS.gene32142:CDS 35.0%
GAATGCTTACTCAAGAGATT+CGG + chr1.2:56926955-56926974 MS.gene32142:CDS 35.0%
GGAAGTTTAAAAGCGGAAAT+AGG + chr1.2:56929093-56929112 MS.gene32142:CDS 35.0%
GTCTTTACCAAACCATGTTA+TGG + chr1.2:56927847-56927866 MS.gene32142:CDS 35.0%
TAATGGAGTAATCCGAAAAC+CGG + chr1.2:56929184-56929203 MS.gene32142:CDS 35.0%
TCAACTTATGAGAGAGAAGT+TGG + chr1.2:56927454-56927473 MS.gene32142:CDS 35.0%
TCATGCTCAAGAAAAAGACA+TGG + chr1.2:56926874-56926893 MS.gene32142:CDS 35.0%
TTTAAACTTCCGAATCCTTG+CGG - chr1.2:56929084-56929103 None:intergenic 35.0%
TTTCAGAAAGTCATGAGTGA+TGG + chr1.2:56927545-56927564 MS.gene32142:CDS 35.0%
TTTCTGAATGGTTGGACTTA+TGG + chr1.2:56926723-56926742 MS.gene32142:CDS 35.0%
TTTGAATGCCTTACTGTCAT+TGG + chr1.2:56928987-56929006 MS.gene32142:CDS 35.0%
! AGGTGATTTTGCATATGGTT+GGG + chr1.2:56927891-56927910 MS.gene32142:CDS 35.0%
! AGTTGATGCAAGGAAACTTA+TGG + chr1.2:56928727-56928746 MS.gene32142:intron 35.0%
! ATCTGGAATCGGAATGTTAT+TGG + chr1.2:56928505-56928524 MS.gene32142:intron 35.0%
! CATAAGAGCAAATCTGGAAT+CGG + chr1.2:56928494-56928513 MS.gene32142:intron 35.0%
! GAAGATTTCCTTTGGAGATA+AGG + chr1.2:56927729-56927748 MS.gene32142:CDS 35.0%
! GGATTGACACATTTTCTGAA+TGG + chr1.2:56926711-56926730 MS.gene32142:CDS 35.0%
! TCCAGATTTGCTCTTATGAT+GGG - chr1.2:56928492-56928511 None:intergenic 35.0%
! TGACACATTTTCTGAATGGT+TGG + chr1.2:56926715-56926734 MS.gene32142:CDS 35.0%
! TGAGCTTTAGTATTTGCAAG+AGG + chr1.2:56928152-56928171 MS.gene32142:CDS 35.0%
! TGCTCTTATGATGGGAAAAT+AGG - chr1.2:56928484-56928503 None:intergenic 35.0%
! TGTGTTTTCCTTGAATACTG+TGG + chr1.2:56928385-56928404 MS.gene32142:intron 35.0%
! TGTTAATTGCAGTTGATGCA+AGG + chr1.2:56928717-56928736 MS.gene32142:intron 35.0%
! TTCCAGATTTGCTCTTATGA+TGG - chr1.2:56928493-56928512 None:intergenic 35.0%
!! AACAGTAGTGATTCTGAAGT+TGG + chr1.2:56928067-56928086 MS.gene32142:CDS 35.0%
!! ACAGTAGTGATTCTGAAGTT+GGG + chr1.2:56928068-56928087 MS.gene32142:CDS 35.0%
!! CTTTGGAGATAAGGTCTTTT+GGG + chr1.2:56927738-56927757 MS.gene32142:CDS 35.0%
!! GATCCTAGTATTTCGAGTTT+CGG + chr1.2:56927946-56927965 MS.gene32142:CDS 35.0%
!! GTGGACTATTGACAGTATTT+TGG + chr1.2:56926551-56926570 MS.gene32142:CDS 35.0%
!! GTTATTGGTGTTGTATCTCT+AGG + chr1.2:56928520-56928539 MS.gene32142:intron 35.0%
!! TCAGGCTTGTTATGCTATAT+TGG + chr1.2:56927313-56927332 MS.gene32142:CDS 35.0%
!! TGTATGCAGATTGGTGTTAA+TGG + chr1.2:56929167-56929186 MS.gene32142:CDS 35.0%
!!! ATTTTGGAGTGTCAAAGAGT+TGG + chr1.2:56926567-56926586 MS.gene32142:CDS 35.0%
AAAAGACATGGGATCTTGGA+CGG + chr1.2:56926886-56926905 MS.gene32142:CDS 40.0%
AAACACACATGCATTTGGCA+AGG - chr1.2:56927793-56927812 None:intergenic 40.0%
AAGGGAGGAATGAAAAAGGA+TGG + chr1.2:56927984-56928003 MS.gene32142:CDS 40.0%
AAGTCATGAGTGATGGTATG+AGG + chr1.2:56927552-56927571 MS.gene32142:CDS 40.0%
AATCCCAAAATCGAGTGCAT+AGG - chr1.2:56927581-56927600 None:intergenic 40.0%
AATTAAGGTGGTTGCTGATC+AGG + chr1.2:56927391-56927410 MS.gene32142:CDS 40.0%
ACTTGAATGGAAGATCCAAC+AGG - chr1.2:56929014-56929033 None:intergenic 40.0%
AGATACACACAAGAGGATAG+AGG - chr1.2:56926478-56926497 None:intergenic 40.0%
AGGGAGGAATGAAAAAGGAT+GGG + chr1.2:56927985-56928004 MS.gene32142:CDS 40.0%
AGTCAAGGGAGGAATGAAAA+AGG + chr1.2:56927980-56927999 MS.gene32142:CDS 40.0%
CAAGTGCAGAAGAAGATTTG+TGG + chr1.2:56929138-56929157 MS.gene32142:CDS 40.0%
CAGACCTCTCAACATTGAAT+TGG - chr1.2:56928871-56928890 None:intergenic 40.0%
CATGTGTGTTTATAAGGGCT+TGG + chr1.2:56927802-56927821 MS.gene32142:CDS 40.0%
CCAAAAGACCTTATCTCCAA+AGG - chr1.2:56927740-56927759 None:intergenic 40.0%
CTCCAAATGCCTGATATAGA+TGG + chr1.2:56929047-56929066 MS.gene32142:CDS 40.0%
GAACAAGGACCCATTTGAAA+GGG - chr1.2:56926665-56926684 None:intergenic 40.0%
GATGCAAGGAAACTTATGGT+TGG + chr1.2:56928731-56928750 MS.gene32142:CDS 40.0%
GCAATTCCTTGCATCAAAAC+CGG - chr1.2:56929206-56929225 None:intergenic 40.0%
GCAGTCAACGCAACAATTAT+AGG - chr1.2:56929119-56929138 None:intergenic 40.0%
GGCAGTGAGAATCTTAAAGA+TGG - chr1.2:56926781-56926800 None:intergenic 40.0%
GTGGAGCTTTCGAAAACATT+AGG + chr1.2:56927017-56927036 MS.gene32142:CDS 40.0%
GTTTGCAAAATTGTGCTGTG+TGG + chr1.2:56927039-56927058 MS.gene32142:CDS 40.0%
TAACAGTACAACGCATAGCT+TGG - chr1.2:56928625-56928644 None:intergenic 40.0%
TATTTGCAAGAGGATAGTCC+AGG + chr1.2:56928162-56928181 MS.gene32142:CDS 40.0%
TCACTCATGAATTGAACGCA+AGG + chr1.2:56927093-56927112 MS.gene32142:CDS 40.0%
TCAGGAGCTGGAGATAATTA+AGG + chr1.2:56927376-56927395 MS.gene32142:CDS 40.0%
TCATCACCCATAACATGGTT+TGG - chr1.2:56927857-56927876 None:intergenic 40.0%
TCCCATCATAAGAGCAAATC+TGG + chr1.2:56928488-56928507 MS.gene32142:intron 40.0%
TCCTTTGCTTCTCAAAGTGA+AGG + chr1.2:56926842-56926861 MS.gene32142:CDS 40.0%
TCTACTGGATTGTAACCATG+GGG + chr1.2:56927916-56927935 MS.gene32142:CDS 40.0%
TGAACAAGGACCCATTTGAA+AGG - chr1.2:56926666-56926685 None:intergenic 40.0%
TGAGGAATACCGTGAGTATA+TGG - chr1.2:56928759-56928778 None:intergenic 40.0%
TGGGAAAGATGTATGCAGAT+TGG + chr1.2:56929158-56929177 MS.gene32142:CDS 40.0%
TGGTGATTTCTTGATTGCTG+TGG + chr1.2:56926587-56926606 MS.gene32142:CDS 40.0%
TTCAGAGATGGCTATTGCAA+TGG - chr1.2:56928820-56928839 None:intergenic 40.0%
TTGTTGCAGATACACACAAG+AGG - chr1.2:56926485-56926504 None:intergenic 40.0%
! ACCATAAGCTGAAAAGTGTG+AGG - chr1.2:56926750-56926769 None:intergenic 40.0%
! ACCTTCACTTTGAGAAGCAA+AGG - chr1.2:56926846-56926865 None:intergenic 40.0%
! CAGGTGATTTTGCATATGGT+TGG + chr1.2:56927890-56927909 MS.gene32142:CDS 40.0%
! GTGATGATGAGAACAGTTTG+TGG + chr1.2:56926532-56926551 MS.gene32142:CDS 40.0%
! TCACACTTTTCAGCTTATGG+TGG + chr1.2:56926749-56926768 MS.gene32142:CDS 40.0%
! TCCTCACACTTTTCAGCTTA+TGG + chr1.2:56926746-56926765 MS.gene32142:CDS 40.0%
! TCTGAAATGAGTTTCTTGCC+TGG - chr1.2:56927532-56927551 None:intergenic 40.0%
! TGGTTGGTACCATATACTCA+CGG + chr1.2:56928747-56928766 MS.gene32142:CDS 40.0%
! TTATAAGGGCTTGGGTTTTG+TGG + chr1.2:56927811-56927830 MS.gene32142:CDS 40.0%
!! AGAAGAAGTGTCATGCTTTG+AGG - chr1.2:56928777-56928796 None:intergenic 40.0%
!! CCTTTGGAGATAAGGTCTTT+TGG + chr1.2:56927737-56927756 MS.gene32142:CDS 40.0%
!! CTTGCATCAAAACCGGTTTT+CGG - chr1.2:56929199-56929218 None:intergenic 40.0%
!! CTTTAAGATTCTCACTGCCT+TGG + chr1.2:56926782-56926801 MS.gene32142:CDS 40.0%
!! GGATGATGGAAGATTTCCTT+TGG + chr1.2:56927721-56927740 MS.gene32142:CDS 40.0%
AAAGACATGGGATCTTGGAC+GGG + chr1.2:56926887-56926906 MS.gene32142:CDS 45.0%
ACATCACCACTAGATGAGCT+TGG - chr1.2:56928022-56928041 None:intergenic 45.0%
ACCATGTTATGGGTGATGAG+AGG + chr1.2:56927858-56927877 MS.gene32142:CDS 45.0%
ACCTAGATCTTGGAGCAATC+AGG + chr1.2:56927358-56927377 MS.gene32142:CDS 45.0%
ATGAAAAAGGATGGGCAACC+TGG + chr1.2:56927993-56928012 MS.gene32142:CDS 45.0%
ATGTTATGGGTGATGAGAGG+AGG + chr1.2:56927861-56927880 MS.gene32142:CDS 45.0%
CAACAGGTCCAATGACAGTA+AGG - chr1.2:56928998-56929017 None:intergenic 45.0%
CAAGATCTAGGTTCTTCAGC+CGG - chr1.2:56927350-56927369 None:intergenic 45.0%
CTCAAGAGGGATTGAGAAGT+AGG - chr1.2:56926613-56926632 None:intergenic 45.0%
CTCGAACGTCCCTTTCAAAT+GGG + chr1.2:56926653-56926672 MS.gene32142:CDS 45.0%
CTGCCGAAACTCGAAATACT+AGG - chr1.2:56927952-56927971 None:intergenic 45.0%
CTTACTGTCATTGGACCTGT+TGG + chr1.2:56928996-56929015 MS.gene32142:CDS 45.0%
GAGATGGCTATTGCAATGGA+AGG - chr1.2:56928816-56928835 None:intergenic 45.0%
GCATATGGTTGGGAATCTAC+TGG + chr1.2:56927901-56927920 MS.gene32142:CDS 45.0%
GCATTCAAATCCCGTAGAAG+CGG - chr1.2:56928976-56928995 None:intergenic 45.0%
GCTTCTCAAAGTGAAGGTCA+GGG + chr1.2:56926848-56926867 MS.gene32142:CDS 45.0%
GGAGCTGGAGATAATTAAGG+TGG + chr1.2:56927379-56927398 MS.gene32142:CDS 45.0%
TAACAAGCCTGAGTTAGCTC+AGG - chr1.2:56927305-56927324 None:intergenic 45.0%
TCATGAGTGATGGTATGAGG+AGG + chr1.2:56927555-56927574 MS.gene32142:CDS 45.0%
TCCTCTCATCACCCATAACA+TGG - chr1.2:56927862-56927881 None:intergenic 45.0%
TCCTGATTGCTCCAAGATCT+AGG - chr1.2:56927362-56927381 None:intergenic 45.0%
TCTGCCCTCATATCTATCAC+TGG - chr1.2:56928131-56928150 None:intergenic 45.0%
TGCTTCTCAAAGTGAAGGTC+AGG + chr1.2:56926847-56926866 MS.gene32142:CDS 45.0%
TGGATTGTAACCATGGGGAA+GGG + chr1.2:56927921-56927940 MS.gene32142:CDS 45.0%
TGTTATGGGTGATGAGAGGA+GGG + chr1.2:56927862-56927881 MS.gene32142:CDS 45.0%
! AGGCCTATGCACTCGATTTT+GGG + chr1.2:56927575-56927594 MS.gene32142:CDS 45.0%
! GCACGCTGCTTCTTTTATCA+TGG - chr1.2:56927771-56927790 None:intergenic 45.0%
! TGATGAGAGGAGGGTTTTTC+AGG + chr1.2:56927871-56927890 MS.gene32142:CDS 45.0%
!! CGAAAACCGGTTTTGATGCA+AGG + chr1.2:56929197-56929216 MS.gene32142:CDS 45.0%
!! GCACTTGCTGTTTCTAGTCT+TGG + chr1.2:56927203-56927222 MS.gene32142:CDS 45.0%
AATAGCCATCTCTGAACCCG+GGG + chr1.2:56928824-56928843 MS.gene32142:CDS 50.0%
ACTAGATGAGCTTGGTCTCC+AGG - chr1.2:56928014-56928033 None:intergenic 50.0%
ACTGGTATATGTCCTACCCC+CGG - chr1.2:56928113-56928132 None:intergenic 50.0%
AGGAACACCTGAGCTAACTC+AGG + chr1.2:56927295-56927314 MS.gene32142:CDS 50.0%
ATCCTTTGCAGAGCTGTCCA+TGG - chr1.2:56927705-56927724 None:intergenic 50.0%
ATCTTGGAGCAATCAGGAGC+TGG + chr1.2:56927364-56927383 MS.gene32142:CDS 50.0%
ATTGTAACCATGGGGAAGGG+GGG + chr1.2:56927924-56927943 MS.gene32142:CDS 50.0%
CAATAGCCATCTCTGAACCC+GGG + chr1.2:56928823-56928842 MS.gene32142:CDS 50.0%
CGGCTGAAGAACCTAGATCT+TGG + chr1.2:56927348-56927367 MS.gene32142:CDS 50.0%
CTGGATTGTAACCATGGGGA+AGG + chr1.2:56927920-56927939 MS.gene32142:CDS 50.0%
GAATGCTATGATGGCAAGCC+AGG + chr1.2:56927511-56927530 MS.gene32142:CDS 50.0%
GACAGCTCTGCAAAGGATGA+TGG + chr1.2:56927707-56927726 MS.gene32142:CDS 50.0%
GAGAGGTCTGCAAGTTCTGT+TGG + chr1.2:56928881-56928900 MS.gene32142:CDS 50.0%
GATTGTAACCATGGGGAAGG+GGG + chr1.2:56927923-56927942 MS.gene32142:CDS 50.0%
GCAATAGCCATCTCTGAACC+CGG + chr1.2:56928822-56928841 MS.gene32142:CDS 50.0%
GCTCGAACGTCCCTTTCAAA+TGG + chr1.2:56926652-56926671 MS.gene32142:CDS 50.0%
GGATTGTAACCATGGGGAAG+GGG + chr1.2:56927922-56927941 MS.gene32142:CDS 50.0%
GGCATTCGAATTGCAGCAAC+CGG - chr1.2:56927248-56927267 None:intergenic 50.0%
GGCGAGAAGGAATGCTATGA+TGG + chr1.2:56927502-56927521 MS.gene32142:CDS 50.0%
TGGAGACCAAGCTCATCTAG+TGG + chr1.2:56928013-56928032 MS.gene32142:CDS 50.0%
TTCCGTGACTTCCGCTTCTA+CGG + chr1.2:56928962-56928981 MS.gene32142:CDS 50.0%
! GAGGCCTATGCACTCGATTT+TGG + chr1.2:56927574-56927593 MS.gene32142:CDS 50.0%
!! CTTGGTGTTTCTAGTGACGC+AGG + chr1.2:56927221-56927240 MS.gene32142:CDS 50.0%
!! GTTGCGTTCTGAAGATTCCC+CGG - chr1.2:56928844-56928863 None:intergenic 50.0%
!! TGTTTCTAGTGACGCAGGAC+CGG + chr1.2:56927226-56927245 MS.gene32142:CDS 50.0%
!! TTGCGTTCTGAAGATTCCCC+GGG - chr1.2:56928843-56928862 None:intergenic 50.0%
AGATTCCCCGGGTTCAGAGA+TGG - chr1.2:56928832-56928851 None:intergenic 55.0%
ATGGATTCGAAGTCGCCGCA+AGG + chr1.2:56929066-56929085 MS.gene32142:CDS 55.0%
CGCAGTTGCACAAGACACCA+AGG - chr1.2:56926802-56926821 None:intergenic 55.0%
CTGGTATATGTCCTACCCCC+GGG - chr1.2:56928112-56928131 None:intergenic 55.0%
GAGCTTTGCAACTGGCGAGA+AGG + chr1.2:56927489-56927508 MS.gene32142:CDS 55.0%
GCGCAATCGAGCTTTGCAAC+TGG + chr1.2:56927481-56927500 MS.gene32142:CDS 55.0%
TCCCGTAGAAGCGGAAGTCA+CGG - chr1.2:56928967-56928986 None:intergenic 55.0%
TCCGTGACTTCCGCTTCTAC+GGG + chr1.2:56928963-56928982 MS.gene32142:CDS 55.0%
TCGAAGTCGCCGCAAGGATT+CGG + chr1.2:56929072-56929091 MS.gene32142:CDS 55.0%
TGCAGCATGCGATAGAGCCA+CGG - chr1.2:56927420-56927439 None:intergenic 55.0%
TGCCATGGACAGCTCTGCAA+AGG + chr1.2:56927700-56927719 MS.gene32142:CDS 55.0%
!! GGGCTTGGGTTTTGTGGTTG+AGG + chr1.2:56927817-56927836 MS.gene32142:CDS 55.0%
!! TTTCGAGTTTCGGCAGACGC+TGG + chr1.2:56927956-56927975 MS.gene32142:CDS 55.0%
AGCTCAGTGTCCTCAGGTCC+CGG + chr1.2:56928091-56928110 MS.gene32142:CDS 60.0%
CAGACGCTGGAAGTCAAGGG+AGG + chr1.2:56927969-56927988 MS.gene32142:CDS 60.0%
CGGCAGACGCTGGAAGTCAA+GGG + chr1.2:56927966-56927985 MS.gene32142:CDS 60.0%
GACATGGGATCTTGGACGGG+AGG + chr1.2:56926890-56926909 MS.gene32142:CDS 60.0%
GTTGGGAGCTCAGTGTCCTC+AGG + chr1.2:56928085-56928104 MS.gene32142:CDS 60.0%
TCGGCAGACGCTGGAAGTCA+AGG + chr1.2:56927965-56927984 MS.gene32142:CDS 60.0%
TGGGATCTTGGACGGGAGGT+TGG + chr1.2:56926894-56926913 MS.gene32142:CDS 60.0%
CTAGGATCCCCCCTTCCCCA+TGG - chr1.2:56927934-56927953 None:intergenic 65.0%
CTCAGTGTCCTCAGGTCCCG+GGG + chr1.2:56928093-56928112 MS.gene32142:CDS 65.0%
GCTCAGTGTCCTCAGGTCCC+GGG + chr1.2:56928092-56928111 MS.gene32142:CDS 65.0%
GGTTGCTGATCAGGTCGCCG+TGG + chr1.2:56927400-56927419 MS.gene32142:CDS 65.0%
TCAGTGTCCTCAGGTCCCGG+GGG + chr1.2:56928094-56928113 MS.gene32142:CDS 65.0%
TGTCCTACCCCCGGGACCTG+AGG - chr1.2:56928104-56928123 None:intergenic 70.0%
TGTCCTCAGGTCCCGGGGGT+AGG + chr1.2:56928098-56928117 MS.gene32142:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 56926441 56929265 56926441 ID=MS.gene32142
chr1.2 mRNA 56926441 56929265 56926441 ID=MS.gene32142.t1;Parent=MS.gene32142
chr1.2 exon 56926441 56928183 56926441 ID=MS.gene32142.t1.exon1;Parent=MS.gene32142.t1
chr1.2 CDS 56926441 56928183 56926441 ID=cds.MS.gene32142.t1;Parent=MS.gene32142.t1
chr1.2 exon 56928729 56929265 56928729 ID=MS.gene32142.t1.exon2;Parent=MS.gene32142.t1
chr1.2 CDS 56928729 56929265 56928729 ID=cds.MS.gene32142.t1;Parent=MS.gene32142.t1
Gene Sequence

>MS.gene32142

ATGGTAAAAGCAATAGTTTCTGTGCTGTTGATTGCCTCTATCCTCTTGTGTGTATCTGCAACAACAGATAATGAATTTCCTAGATGTAATTGTGATGATGAGAACAGTTTGTGGACTATTGACAGTATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCAATCCCTCTTGAGTTGCTTTATTTCGTCAGTTGCTCGAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCTTTTATAGTACTATGTGGATTGACACATTTTCTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTTACCATCTTTAAGATTCTCACTGCCTTGGTGTCTTGTGCAACTGCGATAACGCTTGTCACTTTGATTCCTTTGCTTCTCAAAGTGAAGGTCAGGGAATTCATGCTCAAGAAAAAGACATGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAAAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAAGAGATTCGGAAATCCCTCGATAGACATACTATTCTGTATACTACTTTGGTGGAGCTTTCGAAAACATTAGGTTTGCAAAATTGTGCTGTGTGGATGCCAAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGCAAGGAATTTAGATATTTCTATACCGATTACTGATCCAGATGTTGTAAAAATTAAGGGAAGCAATGGAGTGAATATACTTAGCTCTGAATCAGCACTTGCTGTTTCTAGTCTTGGTGTTTCTAGTGACGCAGGACCGGTTGCTGCAATTCGAATGCCAATGTTACGTGTTTGTAATTTTAAAGGAGGAACACCTGAGCTAACTCAGGCTTGTTATGCTATATTGGTCTTGATTCTTCCGGCTGAAGAACCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCTGATCAGGTCGCCGTGGCTCTATCGCATGCTGCAATTCTTGAAGAGTCTCAACTTATGAGAGAGAAGTTGGAAGAGCGCAATCGAGCTTTGCAACTGGCGAGAAGGAATGCTATGATGGCAAGCCAGGCAAGAAACTCATTTCAGAAAGTCATGAGTGATGGTATGAGGAGGCCTATGCACTCGATTTTGGGATTGCTTTCAATGATACAAGACGATAATTTAAAGAATGAACAGAAGCTTATTGTGGATGCAATGTTAAAGACAAGCAATGTCCTTTCAAACTTGATAAATGATGCCATGGACAGCTCTGCAAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACATTCCATGATAAAAGAAGCAGCGTGCCTTGCCAAATGCATGTGTGTTTATAAGGGCTTGGGTTTTGTGGTTGAGGTTGATAAGTCTTTACCAAACCATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAATCTACTGGATTGTAACCATGGGGAAGGGGGGATCCTAGTATTTCGAGTTTCGGCAGACGCTGGAAGTCAAGGGAGGAATGAAAAAGGATGGGCAACCTGGAGACCAAGCTCATCTAGTGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGTGATTCTGAAGTTGGGAGCTCAGTGTCCTCAGGTCCCGGGGGTAGGACATATACCAGTGATAGATATGAGGGCAGAATGAGCTTTAGTATTTGCAAGAGGATAGTCCAGGTGAGTTACATTGTTTGTTATATGGGTTAATGGATAATAACTGCATCATATCATTGATTTCATTTGATTCTCGAGTCATGTGCTATATACATCTTGCGAAACTGAATTTGGATAGACATCTGTTGATACCTTTTCATTGTTTGTGTGACATAAATAGCTGAATTTGGTTCTTTTAATCAGAACTTGCATTATTTTTACTTGTGTGTTTTCCTTGAATACTGTGGAATATGTTTCAAAAGCTGTATTAAGCTTCAATTGAAGAGACGTGTTTTACTGACCTGTGATGTTAGTTAGAATCCTATTTTCCCATCATAAGAGCAAATCTGGAATCGGAATGTTATTGGTGTTGTATCTCTAGGAGATTAGAAGTAATGCGTGTTCGATATATTTGGTAGTGTATTAAATATTTTAGCTGTAGTTTTTAATTTTGCTTAGGAGCCAAGCTATGCGTTGTACTGTTAAATTTAGCAATCCTTGTATTCTGAGTTAATTTTTTTCTTGCCTTGATTTGATTACTTAATTTCTGTTTTCTATGTTAATTGCAGTTGATGCAAGGAAACTTATGGTTGGTACCATATACTCACGGTATTCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGGCCTTCCATTGCAATAGCCATCTCTGAACCCGGGGAATCTTCAGAACGCAACTATTCCAATTCAATGTTGAGAGGTCTGCAAGTTCTGTTGGTTGACAACGACGATGTAAATAGAGCAGTGACACAAAAACTGCTTCAGAAACTAGGCTGTTCCGTGACTTCCGCTTCTACGGGATTTGAATGCCTTACTGTCATTGGACCTGTTGGATCTTCCATTCAAGTCATTCTTTTGGATCTCCAAATGCCTGATATAGATGGATTCGAAGTCGCCGCAAGGATTCGGAAGTTTAAAAGCGGAAATAGGCCTATAATTGTTGCGTTGACTGCAAGTGCAGAAGAAGATTTGTGGGAAAGATGTATGCAGATTGGTGTTAATGGAGTAATCCGAAAACCGGTTTTGATGCAAGGAATTGCTAGTGAACTCAAAAGAATTCTGATGCAAGGAAATATTTGA
Protein sequence

>MS.gene32142.t1

MVKAIVSVLLIASILLCVSATTDNEFPRCNCDDENSLWTIDSILECQRVGDFLIAVAYFSIPLELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHFLNGWTYGPHTFQLMVALTIFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNARNLDISIPITDPDVVKIKGSNGVNILSSESALAVSSLGVSSDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAEEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQLARRNAMMASQARNSFQKVMSDGMRRPMHSILGLLSMIQDDNLKNEQKLIVDAMLKTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFVVEVDKSLPNHVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADAGSQGRNEKGWATWRPSSSSGDVNIRFEIGINSSDSEVGSSVSSGPGGRTYTSDRYEGRMSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPGESSERNYSNSMLRGLQVLLVDNDDVNRAVTQKLLQKLGCSVTSASTGFECLTVIGPVGSSIQVILLDLQMPDIDGFEVAARIRKFKSGNRPIIVALTASAEEDLWERCMQIGVNGVIRKPVLMQGIASELKRILMQGNI