AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006258

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006258.t1 MTR_1g100220 93.151 146 10 0 2 147 113 258 1.64e-86 253
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006258.t1 AT5G52440 54.967 151 49 7 2 136 112 259 3.14e-32 115

Find 33 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGGTAAGGATTCACTTTC+TGG 0.180828 1.1:+72005937 None:intergenic
AATGCAGGTTGCTCGAAATC+TGG 0.293696 1.1:-72008400 MS.gene006258:CDS
AGAAAGTGAATCCTTACCTT+TGG 0.373691 1.1:-72005935 MS.gene006258:CDS
CTTTCTGGCTTCTGAGGTGG+TGG 0.383809 1.1:+72005952 None:intergenic
GGCAGCTGCTGCACAACTGC+AGG 0.416323 1.1:-72006143 MS.gene006258:CDS
ACTAACCTGGATCTCTCTAA+TGG 0.439471 1.1:+72008350 None:intergenic
ATTTAAGAGTACCCTTGAAC+GGG 0.443904 1.1:-72008219 MS.gene006258:CDS
AAGAGTACGTATTCTGAGTT+GGG 0.445136 1.1:+72008171 None:intergenic
AGTACCCTTGAACGGGAGAT+TGG 0.451217 1.1:-72008212 MS.gene006258:CDS
GATTCACTTTCTGGCTTCTG+AGG 0.461812 1.1:+72005946 None:intergenic
GAAGAGTACGTATTCTGAGT+TGG 0.463633 1.1:+72008170 None:intergenic
ACCCACCATTAGAGAGATCC+AGG 0.479518 1.1:-72008355 MS.gene006258:intron
TCAGAGCTGTATGCTCTACT+TGG 0.481001 1.1:+72006199 None:intergenic
TCACTTTCTGGCTTCTGAGG+TGG 0.512638 1.1:+72005949 None:intergenic
CAAGACCAATCTCCCGTTCA+AGG 0.514273 1.1:+72008207 None:intergenic
TTCTTATGAATCCAAAGGTA+AGG 0.518567 1.1:+72005924 None:intergenic
ATGCAGGTTGCTCGAAATCT+GGG 0.519962 1.1:-72008399 MS.gene006258:CDS
CTGAGAACCATTGGTACTAT+CGG 0.543826 1.1:+72008112 None:intergenic
AATTTAAGAGTACCCTTGAA+CGG 0.550071 1.1:-72008220 MS.gene006258:CDS
GAACAGCAAAGTCAGCCTCC+TGG 0.556526 1.1:-72006088 MS.gene006258:intron
AACAGCAGTCTGAGAACCAT+TGG 0.563019 1.1:+72008103 None:intergenic
CTATAACAATGTAGATGGAA+AGG 0.563261 1.1:-72006227 MS.gene006258:intron
GATTACAGAAGAGCAACTAA+AGG 0.568988 1.1:-72006164 MS.gene006258:CDS
CGTACTTCTTATGAATCCAA+AGG 0.578325 1.1:+72005919 None:intergenic
TTGGTACTATCGGTGGATAG+TGG 0.581780 1.1:+72008122 None:intergenic
ACCTGGATCTCTCTAATGGT+GGG 0.582822 1.1:+72008354 None:intergenic
AACCTGGATCTCTCTAATGG+TGG 0.586086 1.1:+72008353 None:intergenic
TGATGTGGTGTTGCGAACAT+TGG 0.602856 1.1:+72008148 None:intergenic
AAGACCAATCTCCCGTTCAA+GGG 0.614541 1.1:+72008208 None:intergenic
CTATCCACCGATAGTACCAA+TGG 0.620692 1.1:-72008119 MS.gene006258:CDS
AGAACCATTGGTACTATCGG+TGG 0.637633 1.1:+72008115 None:intergenic
GGTGGATAGTGGAGCTGATG+TGG 0.643992 1.1:+72008133 None:intergenic
AAGTAGAGCATACAGCTCTG+AGG 0.718115 1.1:-72006197 MS.gene006258:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTAATTTTGTCTATAAA+AGG - chr1.1:72007934-72007953 MS.gene006258:intron 15.0%
!!! ATCTATTTTATTTTTATCTG+CGG - chr1.1:72006267-72006286 MS.gene006258:intron 15.0%
!!! GTTTAATTTTGTCTATAAAA+GGG - chr1.1:72007935-72007954 MS.gene006258:intron 15.0%
!!! TTTAATTTTGTCTATAAAAG+GGG - chr1.1:72007936-72007955 MS.gene006258:intron 15.0%
!! ATTTATGTACTTCTAGATTT+AGG - chr1.1:72007555-72007574 MS.gene006258:intron 20.0%
!! GATAAAAATAAAATAGATGC+TGG + chr1.1:72006265-72006284 None:intergenic 20.0%
!! TATATCTATAACAATGTAGA+TGG - chr1.1:72008094-72008113 MS.gene006258:intron 20.0%
!! TATTTGATAAAATGCATATG+AGG + chr1.1:72006330-72006349 None:intergenic 20.0%
!!! TCTATTTTATTTTTATCTGC+GGG - chr1.1:72006268-72006287 MS.gene006258:intron 20.0%
! AAATTAAACTAAACCCACTA+TGG + chr1.1:72007924-72007943 None:intergenic 25.0%
! AACAAATTTAATCTACACTC+TGG + chr1.1:72006014-72006033 None:intergenic 25.0%
! AATAAATCACTGAAGAACAA+AGG - chr1.1:72007188-72007207 MS.gene006258:intron 25.0%
! AATAGAACATGATAAAAACG+AGG - chr1.1:72006983-72007002 MS.gene006258:intron 25.0%
! ACTATAGTAAATCTCTTTGA+AGG + chr1.1:72006758-72006777 None:intergenic 25.0%
! ACTATTTATGAACAACGAAA+TGG + chr1.1:72007701-72007720 None:intergenic 25.0%
! CAAAGAGATTTACTATAGTT+TGG - chr1.1:72006759-72006778 MS.gene006258:intron 25.0%
! CATATGGCAAAATAAAAGTA+AGG + chr1.1:72007136-72007155 None:intergenic 25.0%
! CTAACTTGGAAATCTAATAA+TGG + chr1.1:72006830-72006849 None:intergenic 25.0%
! CTATAGTAAATCTCTTTGAA+GGG + chr1.1:72006757-72006776 None:intergenic 25.0%
! GACATTACTAATAGCTAAAT+TGG - chr1.1:72007234-72007253 MS.gene006258:intron 25.0%
! GGGTTTAAAAACAAAGTAAT+GGG - chr1.1:72007977-72007996 MS.gene006258:intron 25.0%
! TATAACCATTGGATCTTTAT+TGG + chr1.1:72006652-72006671 None:intergenic 25.0%
!! AAATCTATTTTCATGACTTG+GGG + chr1.1:72006559-72006578 None:intergenic 25.0%
!! ATATGTCATTTGTGACTATA+TGG + chr1.1:72007463-72007482 None:intergenic 25.0%
!! CAAATCTATTTTCATGACTT+GGG + chr1.1:72006560-72006579 None:intergenic 25.0%
!! CAGTTTTCAATTATAACCAT+TGG + chr1.1:72006663-72006682 None:intergenic 25.0%
!! TATAGTAAATCTCTTTGAAG+GGG + chr1.1:72006756-72006775 None:intergenic 25.0%
!!! ACAATTTTAATCTCAACCAT+TGG - chr1.1:72006597-72006616 MS.gene006258:intron 25.0%
!!! AGATGATTGTTTTGTAAGAT+GGG + chr1.1:72006401-72006420 None:intergenic 25.0%
!!! CTATTTTATTTTTATCTGCG+GGG - chr1.1:72006269-72006288 MS.gene006258:intron 25.0%
AAAAAGTTCCTAGAACCAAA+TGG - chr1.1:72007764-72007783 MS.gene006258:intron 30.0%
AAACATGATTGGCAATTTGA+TGG + chr1.1:72008053-72008072 None:intergenic 30.0%
AACAAACTTCAATGCTAACT+TGG + chr1.1:72006844-72006863 None:intergenic 30.0%
AACATGATTGGCAATTTGAT+GGG + chr1.1:72008052-72008071 None:intergenic 30.0%
ACCTCAATAACCATATCATA+TGG + chr1.1:72006915-72006934 None:intergenic 30.0%
AGAAGAATTTAGTAGTTGCT+AGG - chr1.1:72006451-72006470 MS.gene006258:intron 30.0%
AGCTTCTATTGTAGAAAAGA+TGG - chr1.1:72007351-72007370 MS.gene006258:intron 30.0%
ATCACTAACGACTACAATTT+AGG + chr1.1:72006789-72006808 None:intergenic 30.0%
ATGGCAAAATAAAAGTAAGG+TGG + chr1.1:72007133-72007152 None:intergenic 30.0%
CCAAGTCATGAAAATAGATT+TGG - chr1.1:72006558-72006577 MS.gene006258:intron 30.0%
CTAAATTCTTCTTCAACAGA+TGG + chr1.1:72006443-72006462 None:intergenic 30.0%
CTAGTAATAGTTCACTTTCT+AGG + chr1.1:72007653-72007672 None:intergenic 30.0%
CTATAACAATGTAGATGGAA+AGG - chr1.1:72008099-72008118 MS.gene006258:CDS 30.0%
CTATCAATTGCCATATGATA+TGG - chr1.1:72006902-72006921 MS.gene006258:intron 30.0%
GAAAAATAGCATGCATATGA+TGG + chr1.1:72006364-72006383 None:intergenic 30.0%
GAAATAAGCATTTAAGAAGG+AGG - chr1.1:72008001-72008020 MS.gene006258:intron 30.0%
GGGGTTTAAAAACAAAGTAA+TGG - chr1.1:72007976-72007995 MS.gene006258:intron 30.0%
GGTGAAATAAGCATTTAAGA+AGG - chr1.1:72007998-72008017 MS.gene006258:intron 30.0%
TATAAAAAAGACTAACCAGG+AGG + chr1.1:72008256-72008275 None:intergenic 30.0%
TCTATTGTAGAAAAGATGGA+GGG - chr1.1:72007355-72007374 MS.gene006258:intron 30.0%
TGCTATAAAAAAGACTAACC+AGG + chr1.1:72008259-72008278 None:intergenic 30.0%
TGTTTGACATCAAACATGAT+TGG + chr1.1:72008064-72008083 None:intergenic 30.0%
TTCTATTGTAGAAAAGATGG+AGG - chr1.1:72007354-72007373 MS.gene006258:intron 30.0%
! CCAAATCTATTTTCATGACT+TGG + chr1.1:72006561-72006580 None:intergenic 30.0%
! CTTGGAAATCTAATAATGGA+AGG + chr1.1:72006826-72006845 None:intergenic 30.0%
! TATTAATTTTCCGTTGTCTC+TGG + chr1.1:72007414-72007433 None:intergenic 30.0%
! TGTTCTCTTTTGTCTTCTTT+AGG + chr1.1:72008223-72008242 None:intergenic 30.0%
! TTTGGGGAAAAAAAGAGTAT+TGG + chr1.1:72007744-72007763 None:intergenic 30.0%
! TTTTAATCTCAACCATTGGA+TGG - chr1.1:72006601-72006620 MS.gene006258:intron 30.0%
!! AATCTATTTTCATGACTTGG+GGG + chr1.1:72006558-72006577 None:intergenic 30.0%
!! AATTTAAGAGTACCCTTGAA+CGG - chr1.1:72006106-72006125 MS.gene006258:CDS 30.0%
!! ACAATTATTTCTGCCATAGT+GGG - chr1.1:72007908-72007927 MS.gene006258:intron 30.0%
!! CAGATGATTGTTTTGTAAGA+TGG + chr1.1:72006402-72006421 None:intergenic 30.0%
!! GGATTTTAGCGTAACAATTA+GGG + chr1.1:72006735-72006754 None:intergenic 30.0%
!!! GAGAGTTTTTTAAACTAACC+TGG + chr1.1:72005992-72006011 None:intergenic 30.0%
!!! GGTTCTAGGAACTTTTTTTT+GGG + chr1.1:72007761-72007780 None:intergenic 30.0%
!!! GTTCTAGGAACTTTTTTTTG+GGG + chr1.1:72007760-72007779 None:intergenic 30.0%
!!! TGGTTCTAGGAACTTTTTTT+TGG + chr1.1:72007762-72007781 None:intergenic 30.0%
AAAGGTAAGGATTCACTTTC+TGG + chr1.1:72008392-72008411 None:intergenic 35.0%
AAATCAAAGAATCAACCGAG+TGG + chr1.1:72006046-72006065 None:intergenic 35.0%
AAGGTGAAGATAAAGTCGAA+CGG + chr1.1:72008306-72008325 None:intergenic 35.0%
AATGTCACTCTAGATGTAAG+TGG + chr1.1:72007220-72007239 None:intergenic 35.0%
ACACAGATTGTGCATACATA+TGG + chr1.1:72007152-72007171 None:intergenic 35.0%
ACAGTTGTACTAGCAATAGT+GGG + chr1.1:72007676-72007695 None:intergenic 35.0%
ACCAAATCATGCTTAGAGTA+AGG + chr1.1:72008325-72008344 None:intergenic 35.0%
ACCATCCAATAAAGATCCAA+TGG - chr1.1:72006644-72006663 MS.gene006258:intron 35.0%
ACCATTGGATCTTTATTGGA+TGG + chr1.1:72006648-72006667 None:intergenic 35.0%
ACCTTACTCTAAGCATGATT+TGG - chr1.1:72008321-72008340 MS.gene006258:intron 35.0%
ACTAGGTAGGATTGACTATA+TGG + chr1.1:72007492-72007511 None:intergenic 35.0%
AGAAAGTGAATCCTTACCTT+TGG - chr1.1:72008391-72008410 MS.gene006258:CDS 35.0%
AGAACGTTACAATAAACGAG+TGG - chr1.1:72007269-72007288 MS.gene006258:intron 35.0%
ATAATTAGAGCCAGAGACAA+CGG - chr1.1:72007401-72007420 MS.gene006258:intron 35.0%
ATATAGTCAATCCTACCTAG+TGG - chr1.1:72007491-72007510 MS.gene006258:intron 35.0%
ATCCTGAAGTTCACAAAGAT+AGG + chr1.1:72007061-72007080 None:intergenic 35.0%
ATTAAGCACTTCATCTCGAT+TGG - chr1.1:72007858-72007877 MS.gene006258:intron 35.0%
CATATATTCCCACTACAATC+AGG + chr1.1:72006533-72006552 None:intergenic 35.0%
GATTACAGAAGAGCAACTAA+AGG - chr1.1:72008162-72008181 MS.gene006258:CDS 35.0%
GCCATATGATATGGTTATTG+AGG - chr1.1:72006911-72006930 MS.gene006258:intron 35.0%
TTATTCTACTATCCTCCATC+TGG + chr1.1:72007385-72007404 None:intergenic 35.0%
TTCCTATCTTTGTGAACTTC+AGG - chr1.1:72007056-72007075 MS.gene006258:intron 35.0%
TTCTTCTTCAACAGATGGTA+TGG + chr1.1:72006438-72006457 None:intergenic 35.0%
TTGTCATGTTTCAACCATAC+AGG + chr1.1:72007892-72007911 None:intergenic 35.0%
TTTGTCTATAAAAGGGGTGA+TGG - chr1.1:72007942-72007961 MS.gene006258:intron 35.0%
! AAGAGTACGTATTCTGAGTT+GGG + chr1.1:72006158-72006177 None:intergenic 35.0%
! TCTCTTTTGTCTTCTTTAGG+AGG + chr1.1:72008220-72008239 None:intergenic 35.0%
!! AGAGTATTGGACTTGAAAGA+AGG + chr1.1:72007731-72007750 None:intergenic 35.0%
!! ATCTATTTTCATGACTTGGG+GGG + chr1.1:72006557-72006576 None:intergenic 35.0%
!! ATTTAAGAGTACCCTTGAAC+GGG - chr1.1:72006107-72006126 MS.gene006258:CDS 35.0%
!! CTCTTTTGTCTTCTTTAGGA+GGG + chr1.1:72008219-72008238 None:intergenic 35.0%
!! GACAATTATTTCTGCCATAG+TGG - chr1.1:72007907-72007926 MS.gene006258:intron 35.0%
!! GGGATTTTAGCGTAACAATT+AGG + chr1.1:72006736-72006755 None:intergenic 35.0%
!! TCTTTTGTCTTCTTTAGGAG+GGG + chr1.1:72008218-72008237 None:intergenic 35.0%
AACTTTGTCCAACCATCCAA+TGG + chr1.1:72006616-72006635 None:intergenic 40.0%
AATCTCAACCATTGGATGGT+TGG - chr1.1:72006605-72006624 MS.gene006258:intron 40.0%
ACGTCCTAAAAGAGCAAACA+TGG + chr1.1:72006078-72006097 None:intergenic 40.0%
ACTAACCTGGATCTCTCTAA+TGG + chr1.1:72005979-72005998 None:intergenic 40.0%
ACTAGAGAACCTGATTGTAG+TGG - chr1.1:72006521-72006540 MS.gene006258:intron 40.0%
AGATGCTGGATAACTCACTA+GGG + chr1.1:72006251-72006270 None:intergenic 40.0%
AGTTGCTAGGAGCAAGAAAA+TGG - chr1.1:72006464-72006483 MS.gene006258:intron 40.0%
CATGTGGCAATTCAGTTCAT+TGG + chr1.1:72007024-72007043 None:intergenic 40.0%
CTAGAGAACCTGATTGTAGT+GGG - chr1.1:72006522-72006541 MS.gene006258:intron 40.0%
CTGAGAACCATTGGTACTAT+CGG + chr1.1:72006217-72006236 None:intergenic 40.0%
GACAGTTGTACTAGCAATAG+TGG + chr1.1:72007677-72007696 None:intergenic 40.0%
GGAATACATTAGAGCACATG+TGG + chr1.1:72007040-72007059 None:intergenic 40.0%
TAACCAAACCTCTTTCCACT+AGG + chr1.1:72007509-72007528 None:intergenic 40.0%
TAGATGCTGGATAACTCACT+AGG + chr1.1:72006252-72006271 None:intergenic 40.0%
TGCATCCAACAAGTGTCTAT+GGG + chr1.1:72007616-72007635 None:intergenic 40.0%
TTCCACAAACATGAAGAGTC+TGG - chr1.1:72007804-72007823 MS.gene006258:intron 40.0%
TTGCATCCAACAAGTGTCTA+TGG + chr1.1:72007617-72007636 None:intergenic 40.0%
TTTCAACCATACAGGCGATA+TGG + chr1.1:72007884-72007903 None:intergenic 40.0%
! AAGAGGTTTGGTTATCGTTG+TGG - chr1.1:72007515-72007534 MS.gene006258:intron 40.0%
! CTTGCCATGTTTGCTCTTTT+AGG - chr1.1:72006071-72006090 MS.gene006258:intron 40.0%
! GAAGAGTACGTATTCTGAGT+TGG + chr1.1:72006159-72006178 None:intergenic 40.0%
!! CTTTTGTCTTCTTTAGGAGG+GGG + chr1.1:72008217-72008236 None:intergenic 40.0%
AACAGCAGTCTGAGAACCAT+TGG + chr1.1:72006226-72006245 None:intergenic 45.0%
AACCTGGATCTCTCTAATGG+TGG + chr1.1:72005976-72005995 None:intergenic 45.0%
AAGAATCAACCGAGTGGCAT+TGG + chr1.1:72006040-72006059 None:intergenic 45.0%
AAGACCAATCTCCCGTTCAA+GGG + chr1.1:72006121-72006140 None:intergenic 45.0%
AAGTAGAGCATACAGCTCTG+AGG - chr1.1:72008129-72008148 MS.gene006258:CDS 45.0%
ACCTGGATCTCTCTAATGGT+GGG + chr1.1:72005975-72005994 None:intergenic 45.0%
AGAACCAAATGGAGCAGCAT+AGG - chr1.1:72007775-72007794 MS.gene006258:intron 45.0%
AGAACCATTGGTACTATCGG+TGG + chr1.1:72006214-72006233 None:intergenic 45.0%
ATGCAGGTTGCTCGAAATCT+GGG - chr1.1:72005927-72005946 MS.gene006258:CDS 45.0%
CAAACCTCTTTCCACTAGGT+AGG + chr1.1:72007505-72007524 None:intergenic 45.0%
CAATCCTACCTAGTGGAAAG+AGG - chr1.1:72007498-72007517 MS.gene006258:intron 45.0%
CTACCTAGTGGAAAGAGGTT+TGG - chr1.1:72007503-72007522 MS.gene006258:intron 45.0%
CTATCCACCGATAGTACCAA+TGG - chr1.1:72006207-72006226 MS.gene006258:CDS 45.0%
CTCCAGACTCTTCATGTTTG+TGG + chr1.1:72007809-72007828 None:intergenic 45.0%
GATGACCCATAGACACTTGT+TGG - chr1.1:72007608-72007627 MS.gene006258:intron 45.0%
GTGTCTATGGGTCATCAACT+TGG + chr1.1:72007604-72007623 None:intergenic 45.0%
TCAGAGCTGTATGCTCTACT+TGG + chr1.1:72008130-72008149 None:intergenic 45.0%
TGCTATATGACTGACAGACC+AGG + chr1.1:72006708-72006727 None:intergenic 45.0%
TTCACTACAGCAGCAAATCC+TGG - chr1.1:72006687-72006706 MS.gene006258:intron 45.0%
TTGGTACTATCGGTGGATAG+TGG + chr1.1:72006207-72006226 None:intergenic 45.0%
! GTCTATAAAAGGGGTGATGG+TGG - chr1.1:72007945-72007964 MS.gene006258:intron 45.0%
! TTTGTTGTGCCAATGCCACT+CGG - chr1.1:72006028-72006047 MS.gene006258:intron 45.0%
!! ATAAAAGGGGTGATGGTGGT+GGG - chr1.1:72007949-72007968 MS.gene006258:intron 45.0%
!! ATGCTGCTCCATTTGGTTCT+AGG + chr1.1:72007775-72007794 None:intergenic 45.0%
!! GATTCACTTTCTGGCTTCTG+AGG + chr1.1:72008383-72008402 None:intergenic 45.0%
!! TATAAAAGGGGTGATGGTGG+TGG - chr1.1:72007948-72007967 MS.gene006258:intron 45.0%
!! TGATGTGGTGTTGCGAACAT+TGG + chr1.1:72006181-72006200 None:intergenic 45.0%
!! ATTAAAATTAAACAAAAATT+GGG - chr1.1:72007326-72007345 MS.gene006258:intron 5.0%
!! TAAAATATATATTAAAGAAA+AGG + chr1.1:72006942-72006961 None:intergenic 5.0%
!! TATTAAAATTAAACAAAAAT+TGG - chr1.1:72007325-72007344 MS.gene006258:intron 5.0%
AAGATGGAGGGTTGACCAGA+TGG - chr1.1:72007367-72007386 MS.gene006258:intron 50.0%
ACCCACCATTAGAGAGATCC+AGG - chr1.1:72005971-72005990 MS.gene006258:CDS 50.0%
AGTACCCTTGAACGGGAGAT+TGG - chr1.1:72006114-72006133 MS.gene006258:CDS 50.0%
CAAGACCAATCTCCCGTTCA+AGG + chr1.1:72006122-72006141 None:intergenic 50.0%
GTTGCCTATGCTGCTCCATT+TGG + chr1.1:72007782-72007801 None:intergenic 50.0%
! GATTGGCCATATCGCCTGTA+TGG - chr1.1:72007875-72007894 MS.gene006258:intron 50.0%
!! TAAAAGGGGTGATGGTGGTG+GGG - chr1.1:72007950-72007969 MS.gene006258:intron 50.0%
!! TCACTTTCTGGCTTCTGAGG+TGG + chr1.1:72008380-72008399 None:intergenic 50.0%
ATGGAGGGTTGACCAGATGG+AGG - chr1.1:72007370-72007389 MS.gene006258:intron 55.0%
GAACAGCAAAGTCAGCCTCC+TGG - chr1.1:72008238-72008257 MS.gene006258:intron 55.0%
!! AAAAGGGGTGATGGTGGTGG+GGG - chr1.1:72007951-72007970 MS.gene006258:intron 55.0%
!! CTTTCTGGCTTCTGAGGTGG+TGG + chr1.1:72008377-72008396 None:intergenic 55.0%
!! GGTGGATAGTGGAGCTGATG+TGG + chr1.1:72006196-72006215 None:intergenic 55.0%
!! AAAGGGGTGATGGTGGTGGG+GGG - chr1.1:72007952-72007971 MS.gene006258:intron 60.0%
GGCAGCTGCTGCACAACTGC+AGG - chr1.1:72008183-72008202 MS.gene006258:CDS 65.0%
!! GGGTGATGGTGGTGGGGGGT+GGG - chr1.1:72007956-72007975 MS.gene006258:intron 70.0%
!! GGTGATGGTGGTGGGGGGTG+GGG - chr1.1:72007957-72007976 MS.gene006258:intron 70.0%
!! GGGGTGATGGTGGTGGGGGG+TGG - chr1.1:72007955-72007974 MS.gene006258:intron 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 72005927 72008421 72005927 ID=MS.gene006258
chr1.1 mRNA 72005927 72008421 72005927 ID=MS.gene006258.t1;Parent=MS.gene006258
chr1.1 exon 72008356 72008421 72008356 ID=MS.gene006258.t1.exon1;Parent=MS.gene006258.t1
chr1.1 CDS 72008356 72008421 72008356 ID=cds.MS.gene006258.t1;Parent=MS.gene006258.t1
chr1.1 exon 72008096 72008255 72008096 ID=MS.gene006258.t1.exon2;Parent=MS.gene006258.t1
chr1.1 CDS 72008096 72008255 72008096 ID=cds.MS.gene006258.t1;Parent=MS.gene006258.t1
chr1.1 exon 72006089 72006235 72006089 ID=MS.gene006258.t1.exon3;Parent=MS.gene006258.t1
chr1.1 CDS 72006089 72006235 72006089 ID=cds.MS.gene006258.t1;Parent=MS.gene006258.t1
chr1.1 exon 72005927 72005997 72005927 ID=MS.gene006258.t1.exon4;Parent=MS.gene006258.t1
chr1.1 CDS 72005927 72005997 72005927 ID=cds.MS.gene006258.t1;Parent=MS.gene006258.t1
Gene Sequence

>MS.gene006258

ATGCAGGTTGCTCGAAATCTGGGAAAAACATTGCGTGAATTTCAACCCACCATTAGAGAGATCCAGGTTAGTTTAAAAAACTCTCCAGAGTGTAGATTAAATTTGTTGTGCCAATGCCACTCGGTTGATTCTTTGATTTAGCTACTTGCCATGTTTGCTCTTTTAGGACGTTTCAAGAGAATTTAAGAGTACCCTTGAACGGGAGATTGGTCTTGATGACATTTCAAACCCAACTCAGAATACGTACTCTTCCAATGTTCGCAACACCACATCAGCTCCACTATCCACCGATAGTACCAATGGTTCTCAGACTGCTGTTGACCCTAGTGAGTTATCCAGCATCTATTTTATTTTTATCTGCGGGGCAGTTTAGAATATGAAATATGAACACGTTATTTTTCCTCATATGCATTTTATCAAATACTATTGCAACACCATCATATGCATGCTATTTTTCTCATATGTTATTTTCCCATCTTACAAAACAATCATCTGTAATTGTAAGCTACCATACCATCTGTTGAAGAAGAATTTAGTAGTTGCTAGGAGCAAGAAAATGGAATATGCAGATTGAAAGAAGAAAAACTAAAAAAAACTAGAGAACCTGATTGTAGTGGGAATATATGACCCCCCAAGTCATGAAAATAGATTTGGTGTTGTAAAAAACAACACAATTTTAATCTCAACCATTGGATGGTTGGACAAAGTTATAAGAGTACCATCCAATAAAGATCCAATGGTTATAATTGAAAACTGTTGTTTCACTACAGCAGCAAATCCTGGTCTGTCAGTCATATAGCAGCAACCCTAATTGTTACGCTAAAATCCCCTTCAAAGAGATTTACTATAGTTTGGTCTACCTAAATTGTAGTCGTTAGTGATTTATCTTGTATTTACCTTCCATTATTAGATTTCCAAGTTAGCATTGAAGTTTGTTGTTTGTCTTTTAAATCAGCAAATCATCAAACTCAACTTCTATCAATTGCCATATGATATGGTTATTGAGGTGTTTCCTTTTCTTTAATATATATTTTACTTTCTCATGAAAATTCATCAAATAGAACATGATAAAAACGAGGACATGCTACAAGAGTCCAATGAACTGAATTGCCACATGTGCTCTAATGTATTCCTATCTTTGTGAACTTCAGGATTTTCTTGTGCTGAAATTTCTTATCATTTGTTTCATATATGATGTGTGCTCCACCTTACTTTTATTTTGCCATATGTATGCACAATCTGTGTTTTGCAAGAATTAAAAAATAAATCACTGAAGAACAAAGGAAACTTCCACTTACATCTAGAGTGACATTACTAATAGCTAAATTGGTATCATAGAGATAGAACGTTACAATAAACGAGTGGTTATGCAAGACAAGATTGAATTAAGAATTTAATTATTAAAATTAAACAAAAATTGGGATAGCTTCTATTGTAGAAAAGATGGAGGGTTGACCAGATGGAGGATAGTAGAATAATTAGAGCCAGAGACAACGGAAAATTAATATACACACTCAGATGACATCTAATGATCCATATAGTCACAAATGACATATAATGATCCATATAGTCAATCCTACCTAGTGGAAAGAGGTTTGGTTATCGTTGTGGTGTCGTCAAATCATGCGATTTATGTACTTCTAGATTTAGGAATAACTTGTATAATATAAAGAACCAAGTTGATGACCCATAGACACTTGTTGGATGCAAAATTCTCATTTGTCCTAGAAAGTGAACTATTACTAGCCCACTATTGCTAGTACAACTGTCACCATTTCGTTGTTCATAAATAGTTTGTGTTCCTTCTTTCAAGTCCAATACTCTTTTTTTCCCCAAAAAAAAGTTCCTAGAACCAAATGGAGCAGCATAGGCAACAATTCCACAAACATGAAGAGTCTGGAGATAATTGTTACAACATGTACATTTTATTAATTAAGCACTTCATCTCGATTGGCCATATCGCCTGTATGGTTGAAACATGACAATTATTTCTGCCATAGTGGGTTTAGTTTAATTTTGTCTATAAAAGGGGTGATGGTGGTGGGGGGTGGGGTTTAAAAACAAAGTAATGGGTGAAATAAGCATTTAAGAAGGAGGATATTGTGACATGAGAGCATATTTTCCCATCAAATTGCCAATCATGTTTGATGTCAAACATGAATATGATTATATCTATAACAATGTAGATGGAAAGGCAGATCCAAGTAGAGCATACAGCTCTGAGGATTATCTTAAGATTACAGAAGAGCAACTAAAGGCAGCTGCTGCACAACTGCAGGAGCAAACACCCCCTCCTAAAGAAGACAAAAGAGAACAGCAAAGTCAGCCTCCTGGTTAGTCTTTTTTATAGCACTTTCTCTTTTTTTCTCATTCGTTCCGTTCGACTTTATCTTCACCTTACTCTAAGCATGATTTGGTATGCAGCTAATGAAACATCTGCAACTGTGCCACCACCTCAGAAGCCAGAAAGTGAATCCTTACCTTTGGATTCATAA
Protein sequence

>MS.gene006258.t1

MQVARNLGKTLREFQPTIREIQDVSREFKSTLEREIGLDDISNPTQNTYSSNVRNTTSAPLSTDSTNGSQTAVDPNGKADPSRAYSSEDYLKITEEQLKAAAAQLQEQTPPPKEDKREQQSQPPANETSATVPPPQKPESESLPLDS