Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31538.t1 | XP_013465003.1 | 97.9 | 288 | 5 | 1 | 1 | 288 | 1 | 287 | 8.80E-147 | 529.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31538.t1 | Q7XAB8 | 68.6 | 283 | 83 | 3 | 1 | 282 | 1 | 278 | 3.8e-98 | 359.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31538.t1 | I3SMR8 | 97.9 | 288 | 5 | 1 | 1 | 288 | 1 | 287 | 6.4e-147 | 529.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene31538 | 0.819606 | 1.06E-52 | -1.69E-46 |
| MS.gene049217 | MS.gene31538 | 0.826983 | 2.01E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene31538 | 0.809006 | 2.34E-50 | -1.69E-46 |
| MS.gene049320 | MS.gene31538 | 0.810582 | 1.07E-50 | -1.69E-46 |
| MS.gene04939 | MS.gene31538 | 0.819155 | 1.35E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene31538 | 0.809938 | 1.48E-50 | -1.69E-46 |
| MS.gene049661 | MS.gene31538 | 0.803056 | 4.18E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene31538 | 0.844833 | 5.92E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene31538 | 0.81957 | 1.08E-52 | -1.69E-46 |
| MS.gene050163 | MS.gene31538 | 0.828334 | 9.53E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene31538 | 0.814983 | 1.17E-51 | -1.69E-46 |
| MS.gene050333 | MS.gene31538 | 0.806742 | 7.09E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene31538 | 0.812584 | 3.94E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene31538 | 0.813532 | 2.44E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene31538 | 0.802469 | 5.53E-49 | -1.69E-46 |
| MS.gene050767 | MS.gene31538 | 0.82337 | 1.44E-53 | -1.69E-46 |
| MS.gene050770 | MS.gene31538 | 0.82344 | 1.38E-53 | -1.69E-46 |
| MS.gene050772 | MS.gene31538 | 0.802514 | 5.41E-49 | -1.69E-46 |
| MS.gene05100 | MS.gene31538 | 0.808336 | 3.26E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene31538 | 0.843287 | 1.54E-58 | -1.69E-46 |
| MS.gene051666 | MS.gene31538 | 0.805019 | 1.63E-49 | -1.69E-46 |
| MS.gene051810 | MS.gene31538 | 0.860943 | 1.45E-63 | -1.69E-46 |
| MS.gene051858 | MS.gene31538 | 0.803571 | 3.27E-49 | -1.69E-46 |
| MS.gene052078 | MS.gene31538 | 0.813324 | 2.71E-51 | -1.69E-46 |
| MS.gene052271 | MS.gene31538 | 0.841585 | 4.35E-58 | -1.69E-46 |
| MS.gene052290 | MS.gene31538 | 0.860573 | 1.88E-63 | -1.69E-46 |
| MS.gene052379 | MS.gene31538 | 0.838963 | 2.10E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene31538 | 0.857846 | 1.24E-62 | -1.69E-46 |
| MS.gene053009 | MS.gene31538 | 0.830596 | 2.69E-55 | -1.69E-46 |
| MS.gene053103 | MS.gene31538 | 0.809515 | 1.82E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene31538 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene31538 | 0.83809 | 3.54E-57 | -1.69E-46 |
| MS.gene053632 | MS.gene31538 | 0.862063 | 6.61E-64 | -1.69E-46 |
| MS.gene053915 | MS.gene31538 | 0.817959 | 2.52E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene31538 | 0.8268 | 2.22E-54 | -1.69E-46 |
| MS.gene054376 | MS.gene31538 | 0.811523 | 6.71E-51 | -1.69E-46 |
| MS.gene054642 | MS.gene31538 | 0.826062 | 3.33E-54 | -1.69E-46 |
| MS.gene054802 | MS.gene31538 | 0.821939 | 3.09E-53 | -1.69E-46 |
| MS.gene054803 | MS.gene31538 | 0.819677 | 1.02E-52 | -1.69E-46 |
| MS.gene054804 | MS.gene31538 | 0.825993 | 3.46E-54 | -1.69E-46 |
| MS.gene05505 | MS.gene31538 | 0.815373 | 9.56E-52 | -1.69E-46 |
| MS.gene055206 | MS.gene31538 | 0.809454 | 1.88E-50 | -1.69E-46 |
| MS.gene055254 | MS.gene31538 | 0.853964 | 1.69E-61 | -1.69E-46 |
| MS.gene055397 | MS.gene31538 | 0.882162 | 1.31E-70 | -1.69E-46 |
| MS.gene055412 | MS.gene31538 | 0.814181 | 1.76E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene31538 | 0.846212 | 2.50E-59 | -1.69E-46 |
| MS.gene055502 | MS.gene31538 | 0.80207 | 6.68E-49 | -1.69E-46 |
| MS.gene055896 | MS.gene31538 | 0.80394 | 2.74E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene31538 | 0.818446 | 1.95E-52 | -1.69E-46 |
| MS.gene056487 | MS.gene31538 | 0.814566 | 1.44E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene31538 | 0.863316 | 2.72E-64 | -1.69E-46 |
| MS.gene056657 | MS.gene31538 | 0.82461 | 7.36E-54 | -1.69E-46 |
| MS.gene056903 | MS.gene31538 | 0.80687 | 6.67E-50 | -1.69E-46 |
| MS.gene057076 | MS.gene31538 | 0.806783 | 6.95E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene31538 | 0.859299 | 4.55E-63 | -1.69E-46 |
| MS.gene057146 | MS.gene31538 | 0.803304 | 3.72E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene31538 | 0.830494 | 2.85E-55 | -1.69E-46 |
| MS.gene057295 | MS.gene31538 | 0.802969 | 4.36E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene31538 | 0.807821 | 4.19E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene31538 | 0.82296 | 1.79E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene31538 | 0.810888 | 9.21E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene31538 | 0.826547 | 2.56E-54 | -1.69E-46 |
| MS.gene058928 | MS.gene31538 | 0.83188 | 1.30E-55 | -1.69E-46 |
| MS.gene059536 | MS.gene31538 | 0.80081 | 1.21E-48 | -1.69E-46 |
| MS.gene059677 | MS.gene31538 | 0.819923 | 9.00E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene31538 | 0.812995 | 3.20E-51 | -1.69E-46 |
| MS.gene059960 | MS.gene31538 | 0.848618 | 5.46E-60 | -1.69E-46 |
| MS.gene060804 | MS.gene31538 | 0.802341 | 5.87E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene31538 | 0.835053 | 2.10E-56 | -1.69E-46 |
| MS.gene061041 | MS.gene31538 | 0.853916 | 1.74E-61 | -1.69E-46 |
| MS.gene061200 | MS.gene31538 | 0.837362 | 5.44E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31538 | MS.gene006258 | PPI |
| MS.gene31538 | MS.gene49126 | PPI |
| MS.gene31538 | MS.gene30964 | PPI |
| MS.gene31538 | MS.gene31148 | PPI |
| MS.gene31538 | MS.gene24730 | PPI |
| MS.gene31538 | MS.gene050301 | PPI |
| MS.gene31538 | MS.gene30963 | PPI |
| MS.gene31538 | MS.gene061150 | PPI |
| MS.gene31538 | MS.gene24695 | PPI |
| MS.gene31538 | MS.gene052116 | PPI |
| MS.gene31538 | MS.gene45498 | PPI |
| MS.gene31538 | MS.gene34133 | PPI |
| MS.gene31538 | MS.gene052115 | PPI |
| MS.gene31538 | MS.gene007198 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31538.t1 | MTR_2g089795 | 97.917 | 288 | 5 | 1 | 1 | 288 | 1 | 287 | 0.0 | 578 |
| MS.gene31538.t1 | MTR_4g045980 | 75.610 | 287 | 67 | 3 | 1 | 284 | 1 | 287 | 2.51e-154 | 433 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31538.t1 | AT2G20890 | 67.616 | 281 | 83 | 4 | 3 | 282 | 5 | 278 | 5.31e-132 | 376 |
Find 57 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGCAATTCTGCTTCTAAAA+TGG | 0.248095 | 2.4:+11265819 | MS.gene31538:CDS |
| CCCTTCAACTTCTCCTTCTC+TGG | 0.328222 | 2.4:-11267818 | None:intergenic |
| GAGCCACAGAAGGCTAATAA+TGG | 0.333096 | 2.4:+11268863 | MS.gene31538:CDS |
| GTTCTGATATGTTTGGAATT+CGG | 0.343615 | 2.4:+11265761 | MS.gene31538:CDS |
| TCATGAAACCTGTATTGTTC+TGG | 0.346032 | 2.4:-11267269 | None:intergenic |
| TATGATTCTGTATTTGCTCT+TGG | 0.366606 | 2.4:+11267149 | MS.gene31538:CDS |
| GCTTCAAGTTCTGATATGTT+TGG | 0.372546 | 2.4:+11265754 | MS.gene31538:CDS |
| TGCAAAGAAGTTGGAAGATT+GGG | 0.391763 | 2.4:+11267756 | MS.gene31538:CDS |
| GCTACCTTGTCTAAAATTGT+TGG | 0.392586 | 2.4:-11267949 | None:intergenic |
| TTGGTCGTTTATATGCCTTT+AGG | 0.392956 | 2.4:-11267049 | None:intergenic |
| GAAGAAGAAAAGAGAAGAAA+GGG | 0.415256 | 2.4:+11268838 | MS.gene31538:CDS |
| AGAAGAAGAAAAGAGAAGAA+AGG | 0.421659 | 2.4:+11268837 | MS.gene31538:CDS |
| CAATGCATGTCTTCTGTCAC+AGG | 0.424463 | 2.4:+11265847 | MS.gene31538:CDS |
| AGCTTATATTAATGCATTGA+AGG | 0.425504 | 2.4:+11267241 | MS.gene31538:CDS |
| AGCCACAGAAGGCTAATAAT+GGG | 0.431472 | 2.4:+11268864 | MS.gene31538:CDS |
| AGGAAGATCCAGAACAATAC+AGG | 0.432189 | 2.4:+11267261 | MS.gene31538:CDS |
| GAGCAAATACAGAATCATAT+TGG | 0.435325 | 2.4:-11267145 | None:intergenic |
| ATGCAAAGAAGTTGGAAGAT+TGG | 0.439138 | 2.4:+11267755 | MS.gene31538:CDS |
| CGACAAAAGAAGCGTTGATC+GGG | 0.440456 | 2.4:+11268277 | MS.gene31538:CDS |
| CAGAGTAGATGCAAAGAAGT+TGG | 0.448896 | 2.4:+11267747 | MS.gene31538:intron |
| TTTACCCACTCAATTTGTAA+TGG | 0.450196 | 2.4:-11268888 | None:intergenic |
| AAGAAGCGTTGATCGGGACT+TGG | 0.466265 | 2.4:+11268283 | MS.gene31538:CDS |
| TATCTATAACAATGTGCTGC+AGG | 0.485681 | 2.4:+11267079 | MS.gene31538:CDS |
| GAAGAAAAGAGAAGAAAGGG+TGG | 0.490264 | 2.4:+11268841 | MS.gene31538:CDS |
| CCGTATGCTGCTTTCCAAGT+TGG | 0.492843 | 2.4:+11268313 | MS.gene31538:CDS |
| TAGCTTTGTCTCAGAAACAC+TGG | 0.499760 | 2.4:-11267021 | None:intergenic |
| GGCTCAAAACTCAACTTCAC+TGG | 0.505541 | 2.4:+11267783 | MS.gene31538:CDS |
| CACTGTCTATGATAAACTCA+TGG | 0.515316 | 2.4:+11267178 | MS.gene31538:CDS |
| AGCACATTGTTATAGATACT+AGG | 0.518130 | 2.4:-11267074 | None:intergenic |
| TCGACAAAAGAAGCGTTGAT+CGG | 0.519628 | 2.4:+11268276 | MS.gene31538:CDS |
| TTGCATTTGCCAACTCAAGA+AGG | 0.522030 | 2.4:-11267921 | None:intergenic |
| CATTGTGTTGGTGTTAGAGT+TGG | 0.522081 | 2.4:+11265799 | MS.gene31538:CDS |
| TGCAAAGGGAATTTATTGAC+AGG | 0.527306 | 2.4:+11268351 | MS.gene31538:CDS |
| GCACATTGTTATAGATACTA+GGG | 0.527794 | 2.4:-11267073 | None:intergenic |
| TTCAAGCAAAAGAGCTGCAA+AGG | 0.534940 | 2.4:+11268336 | MS.gene31538:CDS |
| TCCAGAGAAGGAGAAGTTGA+AGG | 0.535017 | 2.4:+11267817 | MS.gene31538:CDS |
| GTCTATGATAAACTCATGGA+AGG | 0.537912 | 2.4:+11267182 | MS.gene31538:CDS |
| ATTAATATAAGCTTTGAAGA+TGG | 0.540950 | 2.4:-11267231 | None:intergenic |
| GACAAAGCTAAATTTCCTAA+AGG | 0.549896 | 2.4:+11267034 | MS.gene31538:CDS |
| TATAGTCGTTTCTTTGCAGT+AGG | 0.552503 | 2.4:+11267889 | MS.gene31538:CDS |
| GCCCCATTATTAGCCTTCTG+TGG | 0.553177 | 2.4:-11268866 | None:intergenic |
| CCAGAGAAGGAGAAGTTGAA+GGG | 0.554923 | 2.4:+11267818 | MS.gene31538:CDS |
| AGAAAGGGTGGAGCCACAGA+AGG | 0.570202 | 2.4:+11268853 | MS.gene31538:CDS |
| TCAAGCAAAAGAGCTGCAAA+GGG | 0.580848 | 2.4:+11268337 | MS.gene31538:CDS |
| TTGTTATAGATACTAGGGAT+TGG | 0.585601 | 2.4:-11267068 | None:intergenic |
| GATTCCTCGTACCATTGTGT+TGG | 0.585869 | 2.4:+11265787 | MS.gene31538:CDS |
| AGCTTTGTCTCAGAAACACT+GGG | 0.588007 | 2.4:-11267020 | None:intergenic |
| GAAGTTGGAAGATTGGGCTA+AGG | 0.605561 | 2.4:+11267762 | MS.gene31538:CDS |
| CCAACTTGGAAAGCAGCATA+CGG | 0.607907 | 2.4:-11268313 | None:intergenic |
| CAGAGAAGGAGAAGTTGAAG+GGG | 0.608753 | 2.4:+11267819 | MS.gene31538:CDS |
| GGAAGGGTATTCTAGTGAAG+AGG | 0.630073 | 2.4:+11267199 | MS.gene31538:CDS |
| ACATATCAGAACTTGAAGCA+AGG | 0.636756 | 2.4:-11265750 | None:intergenic |
| GCCAACATAACAGCTTTGTG+CGG | 0.654032 | 2.4:+11268244 | MS.gene31538:intron |
| CAACTCTAACACCAACACAA+TGG | 0.660091 | 2.4:-11265798 | None:intergenic |
| TCTATGATAAACTCATGGAA+GGG | 0.662278 | 2.4:+11267183 | MS.gene31538:CDS |
| GCCACAGAAGGCTAATAATG+GGG | 0.663091 | 2.4:+11268865 | MS.gene31538:CDS |
| AACACCAACACAATGGTACG+AGG | 0.686845 | 2.4:-11265791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAATAAAATTTTTATATT+TGG | - | chr2.4:11266271-11266290 | None:intergenic | 0.0% |
| !! | AAATAAAACAAAAAAAATTG+GGG | + | chr2.4:11266532-11266551 | MS.gene31538:intron | 10.0% |
| !! | CAAATAAAACAAAAAAAATT+GGG | + | chr2.4:11266531-11266550 | MS.gene31538:intron | 10.0% |
| !! | TCAAATAAAACAAAAAAAAT+TGG | + | chr2.4:11266530-11266549 | MS.gene31538:intron | 10.0% |
| !! | ATGATAAATAAACTTATTTG+AGG | + | chr2.4:11266456-11266475 | MS.gene31538:intron | 15.0% |
| !! | GTAGCTAAATATATATTATT+GGG | + | chr2.4:11266478-11266497 | MS.gene31538:intron | 15.0% |
| !! | TAGCTAAATATATATTATTG+GGG | + | chr2.4:11266479-11266498 | MS.gene31538:intron | 15.0% |
| !!! | TCTTATTTTTTGTATAGTTT+AGG | - | chr2.4:11266411-11266430 | None:intergenic | 15.0% |
| !! | AATAAAGAACAATATAGCAA+AGG | - | chr2.4:11267307-11267326 | None:intergenic | 20.0% |
| !! | GATTTATGATAGTTAATCTT+TGG | + | chr2.4:11268220-11268239 | MS.gene31538:intron | 20.0% |
| !! | GGTAGCTAAATATATATTAT+TGG | + | chr2.4:11266477-11266496 | MS.gene31538:intron | 20.0% |
| !! | TAACAAGAAAATTTATCTGA+AGG | + | chr2.4:11267668-11267687 | MS.gene31538:intron | 20.0% |
| !!! | AAATTACTTTAACTTGTGAA+TGG | - | chr2.4:11268684-11268703 | None:intergenic | 20.0% |
| !!! | ATATGTTTTGGTTATTTTAG+TGG | + | chr2.4:11266080-11266099 | MS.gene31538:intron | 20.0% |
| !!! | ATTAATATAAGCTTTGAAGA+TGG | - | chr2.4:11267234-11267253 | None:intergenic | 20.0% |
| ! | AAATAAGAACTAGACCTTAT+AGG | - | chr2.4:11268062-11268081 | None:intergenic | 25.0% |
| ! | AGCTTATATTAATGCATTGA+AGG | + | chr2.4:11267241-11267260 | MS.gene31538:CDS | 25.0% |
| ! | ATCACTTCAAACTACTTTAT+TGG | - | chr2.4:11268103-11268122 | None:intergenic | 25.0% |
| ! | CTAATATCTACTGCAAAAAA+AGG | + | chr2.4:11266920-11266939 | MS.gene31538:intron | 25.0% |
| ! | TGTCAGTTCAACAAAAATAA+GGG | - | chr2.4:11266694-11266713 | None:intergenic | 25.0% |
| ! | TTATTGAAGTTGAACCTATA+AGG | + | chr2.4:11268045-11268064 | MS.gene31538:intron | 25.0% |
| ! | TTGACAAAAACATGGAAAAA+CGG | + | chr2.4:11266632-11266651 | MS.gene31538:intron | 25.0% |
| ! | TTGTCAGTTCAACAAAAATA+AGG | - | chr2.4:11266695-11266714 | None:intergenic | 25.0% |
| !! | AGTAGTTTGAAGTGATTAAA+TGG | + | chr2.4:11268107-11268126 | MS.gene31538:intron | 25.0% |
| !! | CAATACTTTTCTATTCTTTC+TGG | - | chr2.4:11267608-11267627 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTGCTTAGTACT+TGG | + | chr2.4:11267640-11267659 | MS.gene31538:intron | 25.0% |
| !!! | ATATGTTTTTTTTTACCCCA+GGG | + | chr2.4:11268814-11268833 | MS.gene31538:intron | 25.0% |
| !!! | ATTAGACTTTAACTTGTGAA+TGG | - | chr2.4:11268733-11268752 | None:intergenic | 25.0% |
| !!! | TAAGTGTGTGTTTGATTTTA+CGG | + | chr2.4:11268483-11268502 | MS.gene31538:intron | 25.0% |
| !!! | TATATGTTTTTTTTTACCCC+AGG | + | chr2.4:11268813-11268832 | MS.gene31538:intron | 25.0% |
| AAAACTCTAATGGCAATAGA+CGG | + | chr2.4:11266166-11266185 | MS.gene31538:intron | 30.0% | |
| AACCAAAACATATGCCAAAA+AGG | - | chr2.4:11266073-11266092 | None:intergenic | 30.0% | |
| ACTATCTTAGTTGTAAGCAA+GGG | - | chr2.4:11266594-11266613 | None:intergenic | 30.0% | |
| ACTCAGATTTATAGAGTAGA+TGG | - | chr2.4:11268658-11268677 | None:intergenic | 30.0% | |
| ACTCAGATTTATGGAGTATA+TGG | - | chr2.4:11268707-11268726 | None:intergenic | 30.0% | |
| AGAAGAAGAAAAGAGAAGAA+AGG | + | chr2.4:11268837-11268856 | MS.gene31538:CDS | 30.0% | |
| AGCACATTGTTATAGATACT+AGG | - | chr2.4:11267077-11267096 | None:intergenic | 30.0% | |
| ATGACCAACTAACAATAACA+AGG | - | chr2.4:11266976-11266995 | None:intergenic | 30.0% | |
| CAATGTCTTTCGAAAATAGA+AGG | - | chr2.4:11266763-11266782 | None:intergenic | 30.0% | |
| CTATTGTTGATCACATTGAT+AGG | + | chr2.4:11266109-11266128 | MS.gene31538:intron | 30.0% | |
| GAAGAAGAAAAGAGAAGAAA+GGG | + | chr2.4:11268838-11268857 | MS.gene31538:CDS | 30.0% | |
| GACAAAGCTAAATTTCCTAA+AGG | + | chr2.4:11267034-11267053 | MS.gene31538:CDS | 30.0% | |
| GAGCAAATACAGAATCATAT+TGG | - | chr2.4:11267148-11267167 | None:intergenic | 30.0% | |
| GCACATTGTTATAGATACTA+GGG | - | chr2.4:11267076-11267095 | None:intergenic | 30.0% | |
| GCATCTTTATGAATGTTTGT+AGG | + | chr2.4:11268198-11268217 | MS.gene31538:intron | 30.0% | |
| TAAACTGCTCAAAACTCTAA+TGG | + | chr2.4:11266156-11266175 | MS.gene31538:intron | 30.0% | |
| TACTTTATTGGAACTTCTAG+AGG | - | chr2.4:11268091-11268110 | None:intergenic | 30.0% | |
| TATAGAGTAGATGGAATATC+AGG | - | chr2.4:11268649-11268668 | None:intergenic | 30.0% | |
| TATGATGCTAACTTAGATTC+TGG | - | chr2.4:11267575-11267594 | None:intergenic | 30.0% | |
| TATGATTCTGTATTTGCTCT+TGG | + | chr2.4:11267149-11267168 | MS.gene31538:CDS | 30.0% | |
| TCTATGATAAACTCATGGAA+GGG | + | chr2.4:11267183-11267202 | MS.gene31538:CDS | 30.0% | |
| TCTGATTCTCACAAATTCAA+CGG | - | chr2.4:11268599-11268618 | None:intergenic | 30.0% | |
| TGTTATTGTTAGTTGGTCAT+GGG | + | chr2.4:11266976-11266995 | MS.gene31538:intron | 30.0% | |
| TTGTTATAGATACTAGGGAT+TGG | - | chr2.4:11267071-11267090 | None:intergenic | 30.0% | |
| TTTGAGCAGTTTATAAAGAC+TGG | - | chr2.4:11266149-11266168 | None:intergenic | 30.0% | |
| ! | AGAACCAACAATTTTAGACA+AGG | + | chr2.4:11267945-11267964 | MS.gene31538:CDS | 30.0% |
| ! | GGTTTGTGCTTTTGTTAATT+TGG | + | chr2.4:11265868-11265887 | MS.gene31538:intron | 30.0% |
| ! | GTTCTGATATGTTTGGAATT+CGG | + | chr2.4:11265761-11265780 | MS.gene31538:CDS | 30.0% |
| ! | TCTATGTTTTGCAAACTCTA+TGG | - | chr2.4:11266846-11266865 | None:intergenic | 30.0% |
| ! | TTGTTATTGTTAGTTGGTCA+TGG | + | chr2.4:11266975-11266994 | MS.gene31538:intron | 30.0% |
| !! | ACTTTTCTATTCTTTCTGGT+TGG | - | chr2.4:11267604-11267623 | None:intergenic | 30.0% |
| !! | ATCCTTTTTGGCATATGTTT+TGG | + | chr2.4:11266068-11266087 | MS.gene31538:intron | 30.0% |
| !! | TGAACCTTGTTATTGTTAGT+TGG | + | chr2.4:11266969-11266988 | MS.gene31538:intron | 30.0% |
| !!! | CCAAACCAAGTTTTAGATAA+GGG | + | chr2.4:11265893-11265912 | MS.gene31538:intron | 30.0% |
| !!! | CTTTTCTATTCTTTCTGGTT+GGG | - | chr2.4:11267603-11267622 | None:intergenic | 30.0% |
| !!! | TCCAAACCAAGTTTTAGATA+AGG | + | chr2.4:11265892-11265911 | MS.gene31538:intron | 30.0% |
| AAAGGATCCCCAAAAGATTA+CGG | - | chr2.4:11266055-11266074 | None:intergenic | 35.0% | |
| AAGGATATTGCAAAAAGAGC+AGG | + | chr2.4:11267847-11267866 | MS.gene31538:CDS | 35.0% | |
| ACATATCAGAACTTGAAGCA+AGG | - | chr2.4:11265753-11265772 | None:intergenic | 35.0% | |
| AGTTAGTTGCATGCATGATT+AGG | + | chr2.4:11266004-11266023 | MS.gene31538:intron | 35.0% | |
| ATGCAAAGAAGTTGGAAGAT+TGG | + | chr2.4:11267755-11267774 | MS.gene31538:CDS | 35.0% | |
| CAAAACATAGACATGAGTGT+AGG | + | chr2.4:11266855-11266874 | MS.gene31538:intron | 35.0% | |
| CACTATCTTAGTTGTAAGCA+AGG | - | chr2.4:11266595-11266614 | None:intergenic | 35.0% | |
| CACTGTCTATGATAAACTCA+TGG | + | chr2.4:11267178-11267197 | MS.gene31538:CDS | 35.0% | |
| CGAAGCTAAGTTAAACCTAT+GGG | - | chr2.4:11266571-11266590 | None:intergenic | 35.0% | |
| CTGGTACTTGAAAATCGTTA+TGG | - | chr2.4:11266790-11266809 | None:intergenic | 35.0% | |
| GAAACGAGTAGAAGAAAAAG+TGG | - | chr2.4:11265731-11265750 | None:intergenic | 35.0% | |
| GAAGCTAAGTTAAACCTATG+GGG | - | chr2.4:11266570-11266589 | None:intergenic | 35.0% | |
| GAGTTACAATTACAGCTTGA+TGG | + | chr2.4:11268763-11268782 | MS.gene31538:intron | 35.0% | |
| GGCATCATGCATGATTTATT+TGG | + | chr2.4:11267985-11268004 | MS.gene31538:intron | 35.0% | |
| GTCTATGATAAACTCATGGA+AGG | + | chr2.4:11267182-11267201 | MS.gene31538:CDS | 35.0% | |
| TATAGTCGTTTCTTTGCAGT+AGG | + | chr2.4:11267889-11267908 | MS.gene31538:CDS | 35.0% | |
| TATCTATAACAATGTGCTGC+AGG | + | chr2.4:11267079-11267098 | MS.gene31538:CDS | 35.0% | |
| TCATGAAACCTGTATTGTTC+TGG | - | chr2.4:11267272-11267291 | None:intergenic | 35.0% | |
| TGCAAAGAAGTTGGAAGATT+GGG | + | chr2.4:11267756-11267775 | MS.gene31538:CDS | 35.0% | |
| TGCAAAGGGAATTTATTGAC+AGG | + | chr2.4:11268351-11268370 | MS.gene31538:CDS | 35.0% | |
| TTGGTCGTTTATATGCCTTT+AGG | - | chr2.4:11267052-11267071 | None:intergenic | 35.0% | |
| TTGTAGGAGGAAAACATATC+AGG | - | chr2.4:11268139-11268158 | None:intergenic | 35.0% | |
| TTGTTGATCACATTGATAGG+TGG | + | chr2.4:11266112-11266131 | MS.gene31538:intron | 35.0% | |
| ! | ATGTTTTGCAAACTCTATGG+TGG | - | chr2.4:11266843-11266862 | None:intergenic | 35.0% |
| ! | CCCTTATCTAAAACTTGGTT+TGG | - | chr2.4:11265896-11265915 | None:intergenic | 35.0% |
| ! | CTTATGCACCGTAATCTTTT+GGG | + | chr2.4:11266044-11266063 | MS.gene31538:intron | 35.0% |
| ! | GCTACCTTGTCTAAAATTGT+TGG | - | chr2.4:11267952-11267971 | None:intergenic | 35.0% |
| ! | GCTTCAAGTTCTGATATGTT+TGG | + | chr2.4:11265754-11265773 | MS.gene31538:CDS | 35.0% |
| ! | TCTTATGCACCGTAATCTTT+TGG | + | chr2.4:11266043-11266062 | MS.gene31538:intron | 35.0% |
| ! | TGGCAATTCTGCTTCTAAAA+TGG | + | chr2.4:11265819-11265838 | MS.gene31538:CDS | 35.0% |
| ! | TTATGCACCGTAATCTTTTG+GGG | + | chr2.4:11266045-11266064 | MS.gene31538:intron | 35.0% |
| ! | TTGCTACTTAGAGCAATTGT+AGG | - | chr2.4:11268155-11268174 | None:intergenic | 35.0% |
| !! | AACTCTATGGTGGACTAATT+TGG | - | chr2.4:11266833-11266852 | None:intergenic | 35.0% |
| !! | AATCTTTTGGGGATCCTTTT+TGG | + | chr2.4:11266056-11266075 | MS.gene31538:intron | 35.0% |
| !!! | AACCAAGTTTTAGATAAGGG+AGG | + | chr2.4:11265896-11265915 | MS.gene31538:intron | 35.0% |
| !!! | AAGCTAGCAACTTTTTTACG+AGG | + | chr2.4:11266242-11266261 | MS.gene31538:intron | 35.0% |
| !!! | AGCTAGCAACTTTTTTACGA+GGG | + | chr2.4:11266243-11266262 | MS.gene31538:intron | 35.0% |
| AACAAACTCTGGATTGTGTG+CGG | - | chr2.4:11267550-11267569 | None:intergenic | 40.0% | |
| AAGGTAGCGCAATTCATTCA+AGG | + | chr2.4:11267964-11267983 | MS.gene31538:intron | 40.0% | |
| AGATTCTGGCAAACAAACTC+TGG | - | chr2.4:11267561-11267580 | None:intergenic | 40.0% | |
| AGCCACAGAAGGCTAATAAT+GGG | + | chr2.4:11268864-11268883 | MS.gene31538:CDS | 40.0% | |
| AGGAAGATCCAGAACAATAC+AGG | + | chr2.4:11267261-11267280 | MS.gene31538:CDS | 40.0% | |
| ATAGACATGAGTGTAGGACA+TGG | + | chr2.4:11266861-11266880 | MS.gene31538:intron | 40.0% | |
| CAACTCTAACACCAACACAA+TGG | - | chr2.4:11265801-11265820 | None:intergenic | 40.0% | |
| CAGAGTAGATGCAAAGAAGT+TGG | + | chr2.4:11267747-11267766 | MS.gene31538:intron | 40.0% | |
| CATTGATAGGTGGTTCAAGA+TGG | + | chr2.4:11266122-11266141 | MS.gene31538:intron | 40.0% | |
| CTACTTAGAGCAATTGTAGG+AGG | - | chr2.4:11268152-11268171 | None:intergenic | 40.0% | |
| CTTTGCATCTACTCTGTAGA+GGG | - | chr2.4:11267743-11267762 | None:intergenic | 40.0% | |
| GAAAAGCCATGATAACAGAG+AGG | - | chr2.4:11268413-11268432 | None:intergenic | 40.0% | |
| GAAGAAAAGAGAAGAAAGGG+TGG | + | chr2.4:11268841-11268860 | MS.gene31538:CDS | 40.0% | |
| GAATGGCACACTCAGATTTA+TGG | - | chr2.4:11268716-11268735 | None:intergenic | 40.0% | |
| GATAGTGACTTGATCAGTGT+CGG | + | chr2.4:11266608-11266627 | MS.gene31538:intron | 40.0% | |
| GCAAAAAGAGCAGGAGAAAA+GGG | + | chr2.4:11267856-11267875 | MS.gene31538:CDS | 40.0% | |
| GCGAAGCTAAGTTAAACCTA+TGG | - | chr2.4:11266572-11266591 | None:intergenic | 40.0% | |
| GCTGATTGCGTGTAATCAAA+GGG | - | chr2.4:11267464-11267483 | None:intergenic | 40.0% | |
| TCAAGCAAAAGAGCTGCAAA+GGG | + | chr2.4:11268337-11268356 | MS.gene31538:CDS | 40.0% | |
| TCTTTGCATCTACTCTGTAG+AGG | - | chr2.4:11267744-11267763 | None:intergenic | 40.0% | |
| TGCAAAAAGAGCAGGAGAAA+AGG | + | chr2.4:11267855-11267874 | MS.gene31538:CDS | 40.0% | |
| TGTTCTCCTCTCTGTTATCA+TGG | + | chr2.4:11268404-11268423 | MS.gene31538:intron | 40.0% | |
| TTAAACCTATGGGGTAGCAT+TGG | - | chr2.4:11266561-11266580 | None:intergenic | 40.0% | |
| TTCAAGCAAAAGAGCTGCAA+AGG | + | chr2.4:11268336-11268355 | MS.gene31538:CDS | 40.0% | |
| TTGATCAGATGGTCTAGAAG+TGG | - | chr2.4:11267486-11267505 | None:intergenic | 40.0% | |
| TTGCATTTGCCAACTCAAGA+AGG | - | chr2.4:11267924-11267943 | None:intergenic | 40.0% | |
| ! | AGCTTTGTCTCAGAAACACT+GGG | - | chr2.4:11267023-11267042 | None:intergenic | 40.0% |
| ! | CACCTCCCTTATCTAAAACT+TGG | - | chr2.4:11265901-11265920 | None:intergenic | 40.0% |
| ! | CTCTTTTGCTTGAACCAACT+TGG | - | chr2.4:11268330-11268349 | None:intergenic | 40.0% |
| ! | GTGGACTAATTTGGTATGTG+GGG | - | chr2.4:11266824-11266843 | None:intergenic | 40.0% |
| ! | GTTGAGTTTTCATCCAGAGA+AGG | + | chr2.4:11267805-11267824 | MS.gene31538:CDS | 40.0% |
| ! | TCTCTTTTCTTCTTCTCCCT+GGG | - | chr2.4:11268833-11268852 | None:intergenic | 40.0% |
| ! | TTCTCTTTTCTTCTTCTCCC+TGG | - | chr2.4:11268834-11268853 | None:intergenic | 40.0% |
| !! | AGAAGTTGAAGGGGTTTTGA+AGG | + | chr2.4:11267828-11267847 | MS.gene31538:CDS | 40.0% |
| !! | CATTGTGTTGGTGTTAGAGT+TGG | + | chr2.4:11265799-11265818 | MS.gene31538:CDS | 40.0% |
| !! | GGTGGACTAATTTGGTATGT+GGG | - | chr2.4:11266825-11266844 | None:intergenic | 40.0% |
| !! | GTGTCGGTTTGACAAAAACA+TGG | + | chr2.4:11266624-11266643 | MS.gene31538:intron | 40.0% |
| !! | TAGCTTTGTCTCAGAAACAC+TGG | - | chr2.4:11267024-11267043 | None:intergenic | 40.0% |
| !! | TCGACAAAAGAAGCGTTGAT+CGG | + | chr2.4:11268276-11268295 | MS.gene31538:CDS | 40.0% |
| !! | TCTTTTTCGCCTTCTTGAGT+TGG | + | chr2.4:11267912-11267931 | MS.gene31538:CDS | 40.0% |
| !! | TGGTGGACTAATTTGGTATG+TGG | - | chr2.4:11266826-11266845 | None:intergenic | 40.0% |
| !!! | CTAGCAACTTTTTTACGAGG+GGG | + | chr2.4:11266245-11266264 | MS.gene31538:intron | 40.0% |
| !!! | GCTAGCAACTTTTTTACGAG+GGG | + | chr2.4:11266244-11266263 | MS.gene31538:intron | 40.0% |
| AACACCAACACAATGGTACG+AGG | - | chr2.4:11265794-11265813 | None:intergenic | 45.0% | |
| AAGTCATCGTCTGAGTGACA+AGG | + | chr2.4:11266727-11266746 | MS.gene31538:intron | 45.0% | |
| ACAGAGAGGAGAACAACTGA+AGG | - | chr2.4:11268399-11268418 | None:intergenic | 45.0% | |
| ACATGAGTGTAGGACATGGT+GGG | + | chr2.4:11266865-11266884 | MS.gene31538:intron | 45.0% | |
| ACTATGTCCAGCAGAGGTTT+GGG | + | chr2.4:11267422-11267441 | MS.gene31538:intron | 45.0% | |
| CAATGCATGTCTTCTGTCAC+AGG | + | chr2.4:11265847-11265866 | MS.gene31538:CDS | 45.0% | |
| CAGAGAAGGAGAAGTTGAAG+GGG | + | chr2.4:11267819-11267838 | MS.gene31538:CDS | 45.0% | |
| CAGAGAGGAGAACAACTGAA+GGG | - | chr2.4:11268398-11268417 | None:intergenic | 45.0% | |
| CCAACTTGGAAAGCAGCATA+CGG | - | chr2.4:11268316-11268335 | None:intergenic | 45.0% | |
| CCAGAGAAGGAGAAGTTGAA+GGG | + | chr2.4:11267818-11267837 | MS.gene31538:CDS | 45.0% | |
| CTGTTGCGATCTTGATCAGA+TGG | - | chr2.4:11267497-11267516 | None:intergenic | 45.0% | |
| CTTCTTGTCCTTACAACCAG+CGG | + | chr2.4:11266217-11266236 | MS.gene31538:intron | 45.0% | |
| GAAGTTGGAAGATTGGGCTA+AGG | + | chr2.4:11267762-11267781 | MS.gene31538:CDS | 45.0% | |
| GAGCCACAGAAGGCTAATAA+TGG | + | chr2.4:11268863-11268882 | MS.gene31538:CDS | 45.0% | |
| GATTCCTCGTACCATTGTGT+TGG | + | chr2.4:11265787-11265806 | MS.gene31538:CDS | 45.0% | |
| GCCACAGAAGGCTAATAATG+GGG | + | chr2.4:11268865-11268884 | MS.gene31538:CDS | 45.0% | |
| GGCTCAAAACTCAACTTCAC+TGG | + | chr2.4:11267783-11267802 | MS.gene31538:CDS | 45.0% | |
| GGCTGATTGCGTGTAATCAA+AGG | - | chr2.4:11267465-11267484 | None:intergenic | 45.0% | |
| GTTGTAAGGACAAGAAGGAC+CGG | - | chr2.4:11266214-11266233 | None:intergenic | 45.0% | |
| TCCAGAGAAGGAGAAGTTGA+AGG | + | chr2.4:11267817-11267836 | MS.gene31538:CDS | 45.0% | |
| TTGTAAGGACAAGAAGGACC+GGG | - | chr2.4:11266213-11266232 | None:intergenic | 45.0% | |
| ! | CTCTTTTCTTCTTCTCCCTG+GGG | - | chr2.4:11268832-11268851 | None:intergenic | 45.0% |
| ! | GCCAACATAACAGCTTTGTG+CGG | + | chr2.4:11268244-11268263 | MS.gene31538:intron | 45.0% |
| !! | CGACAAAAGAAGCGTTGATC+GGG | + | chr2.4:11268277-11268296 | MS.gene31538:CDS | 45.0% |
| !! | GGAAGGGTATTCTAGTGAAG+AGG | + | chr2.4:11267199-11267218 | MS.gene31538:CDS | 45.0% |
| !!! | GATTTTCAAGTACCAGCCCA+TGG | + | chr2.4:11266794-11266813 | MS.gene31538:intron | 45.0% |
| !! | ATAGTAATAATAATTAATAA+CGG | + | chr2.4:11267379-11267398 | MS.gene31538:intron | 5.0% |
| ATGAGTGTAGGACATGGTGG+GGG | + | chr2.4:11266867-11266886 | MS.gene31538:intron | 50.0% | |
| CATGAGTGTAGGACATGGTG+GGG | + | chr2.4:11266866-11266885 | MS.gene31538:intron | 50.0% | |
| CCCTTCAACTTCTCCTTCTC+TGG | - | chr2.4:11267821-11267840 | None:intergenic | 50.0% | |
| CTGAAGACTATGTCCAGCAG+AGG | + | chr2.4:11267416-11267435 | MS.gene31538:intron | 50.0% | |
| CTGCTGGACATAGTCTTCAG+TGG | - | chr2.4:11267416-11267435 | None:intergenic | 50.0% | |
| GACATGAGTGTAGGACATGG+TGG | + | chr2.4:11266864-11266883 | MS.gene31538:intron | 50.0% | |
| GACTATGTCCAGCAGAGGTT+TGG | + | chr2.4:11267421-11267440 | MS.gene31538:intron | 50.0% | |
| GCATGCAGTCAACCACATCA+GGG | - | chr2.4:11267520-11267539 | None:intergenic | 50.0% | |
| GCCGCACAAAGCTGTTATGT+TGG | - | chr2.4:11268248-11268267 | None:intergenic | 50.0% | |
| GGTAACCAATGCTACCCCAT+AGG | + | chr2.4:11266553-11266572 | MS.gene31538:intron | 50.0% | |
| TCATCGTCTGAGTGACAAGG+TGG | + | chr2.4:11266730-11266749 | MS.gene31538:intron | 50.0% | |
| TGCATGCAGTCAACCACATC+AGG | - | chr2.4:11267521-11267540 | None:intergenic | 50.0% | |
| TGGTATGTGGGGTCTACCAT+GGG | - | chr2.4:11266813-11266832 | None:intergenic | 50.0% | |
| TTGGTATGTGGGGTCTACCA+TGG | - | chr2.4:11266814-11266833 | None:intergenic | 50.0% | |
| ! | CGCTGGTTGTAAGGACAAGA+AGG | - | chr2.4:11266219-11266238 | None:intergenic | 50.0% |
| !! | AAGAAGCGTTGATCGGGACT+TGG | + | chr2.4:11268283-11268302 | MS.gene31538:CDS | 50.0% |
| !! | CCGTATGCTGCTTTCCAAGT+TGG | + | chr2.4:11268313-11268332 | MS.gene31538:CDS | 50.0% |
| !! | GCCCCATTATTAGCCTTCTG+TGG | - | chr2.4:11268869-11268888 | None:intergenic | 50.0% |
| ACCGGGAGCTTCTACTTCAG+AGG | - | chr2.4:11266196-11266215 | None:intergenic | 55.0% | |
| AGAAAGGGTGGAGCCACAGA+AGG | + | chr2.4:11268853-11268872 | MS.gene31538:CDS | 55.0% | |
| AGATCGCAACAGCCCTGATG+TGG | + | chr2.4:11267505-11267524 | MS.gene31538:intron | 55.0% | |
| CACACAACCCAAACCTCTGC+TGG | - | chr2.4:11267432-11267451 | None:intergenic | 55.0% | |
| CCGGGAGCTTCTACTTCAGA+GGG | - | chr2.4:11266195-11266214 | None:intergenic | 55.0% | |
| ! | AAAGTTGCTAGCTTCGCCGC+TGG | - | chr2.4:11266236-11266255 | None:intergenic | 55.0% |
| ! | TAGCTTCGCCGCTGGTTGTA+AGG | - | chr2.4:11266228-11266247 | None:intergenic | 55.0% |
| !! | CCCTCTGAAGTAGAAGCTCC+CGG | + | chr2.4:11266192-11266211 | MS.gene31538:intron | 55.0% |
| ATGTGGGGTCTACCATGGGC+TGG | - | chr2.4:11266809-11266828 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 11265670 | 11268901 | 11265670 | ID=MS.gene31538 |
| chr2.4 | mRNA | 11265670 | 11268901 | 11265670 | ID=MS.gene31538.t1;Parent=MS.gene31538 |
| chr2.4 | exon | 11265670 | 11265868 | 11265670 | ID=MS.gene31538.t1.exon1;Parent=MS.gene31538.t1 |
| chr2.4 | CDS | 11265670 | 11265868 | 11265670 | ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1 |
| chr2.4 | exon | 11267015 | 11267282 | 11267015 | ID=MS.gene31538.t1.exon2;Parent=MS.gene31538.t1 |
| chr2.4 | CDS | 11267015 | 11267282 | 11267015 | ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1 |
| chr2.4 | exon | 11267750 | 11267966 | 11267750 | ID=MS.gene31538.t1.exon3;Parent=MS.gene31538.t1 |
| chr2.4 | CDS | 11267750 | 11267966 | 11267750 | ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1 |
| chr2.4 | exon | 11268257 | 11268372 | 11268257 | ID=MS.gene31538.t1.exon4;Parent=MS.gene31538.t1 |
| chr2.4 | CDS | 11268257 | 11268372 | 11268257 | ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1 |
| chr2.4 | exon | 11268835 | 11268901 | 11268835 | ID=MS.gene31538.t1.exon5;Parent=MS.gene31538.t1 |
| chr2.4 | CDS | 11268835 | 11268901 | 11268835 | ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1 |
| Gene Sequence |
| Protein sequence |
