AlfalfaGEDB | MS.gene31538

M. sativa cultivar XinJiangDaYe / MS.gene31538

KEGG: -
GO: GO:0008150 GO:0008152 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0022607 GO:0034622 GO:0043933 GO:0044237 GO:0065003 GO:0071840
PFAM: PF11264.11

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31538.t1	XP_013465003.1	97.9	288	5	1	1	288	1	287	8.80E-147	529.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31538.t1	Q7XAB8	68.6	283	83	3	1	282	1	278	3.8e-98	359.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31538.t1	I3SMR8	97.9	288	5	1	1	288	1	287	6.4e-147	529.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene31538	0.819606	1.06E-52	-1.69E-46
MS.gene049217	MS.gene31538	0.826983	2.01E-54	-1.69E-46
MS.gene049285	MS.gene31538	0.809006	2.34E-50	-1.69E-46
MS.gene049320	MS.gene31538	0.810582	1.07E-50	-1.69E-46
MS.gene04939	MS.gene31538	0.819155	1.35E-52	-1.69E-46
MS.gene049427	MS.gene31538	0.809938	1.48E-50	-1.69E-46
MS.gene049661	MS.gene31538	0.803056	4.18E-49	-1.69E-46
MS.gene049805	MS.gene31538	0.844833	5.92E-59	-1.69E-46
MS.gene050076	MS.gene31538	0.81957	1.08E-52	-1.69E-46
MS.gene050163	MS.gene31538	0.828334	9.53E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene31538	MS.gene006258	PPI
MS.gene31538	MS.gene49126	PPI
MS.gene31538	MS.gene30964	PPI
MS.gene31538	MS.gene31148	PPI
MS.gene31538	MS.gene24730	PPI
MS.gene31538	MS.gene050301	PPI
MS.gene31538	MS.gene30963	PPI
MS.gene31538	MS.gene061150	PPI
MS.gene31538	MS.gene24695	PPI
MS.gene31538	MS.gene052116	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31538.t1	MTR_2g089795	97.917	288	5	1	1	288	1	287	0.0	578
MS.gene31538.t1	MTR_4g045980	75.610	287	67	3	1	284	1	287	2.51e-154	433

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene31538.t1	AT2G20890	67.616	281	83	4	3	282	5	278	5.31e-132	376

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Find 57 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACACCAACACAATGGTACG+AGG	0.686845	2.4:-11265791	None:intergenic
AAGAAGCGTTGATCGGGACT+TGG	0.466265	2.4:+11268283	MS.gene31538:CDS
ACATATCAGAACTTGAAGCA+AGG	0.636756	2.4:-11265750	None:intergenic
AGAAAGGGTGGAGCCACAGA+AGG	0.570202	2.4:+11268853	MS.gene31538:CDS
AGAAGAAGAAAAGAGAAGAA+AGG	0.421659	2.4:+11268837	MS.gene31538:CDS
AGCACATTGTTATAGATACT+AGG	0.518130	2.4:-11267074	None:intergenic
AGCCACAGAAGGCTAATAAT+GGG	0.431472	2.4:+11268864	MS.gene31538:CDS
AGCTTATATTAATGCATTGA+AGG	0.425504	2.4:+11267241	MS.gene31538:CDS
AGCTTTGTCTCAGAAACACT+GGG	0.588007	2.4:-11267020	None:intergenic
AGGAAGATCCAGAACAATAC+AGG	0.432189	2.4:+11267261	MS.gene31538:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCTAATGGCAATAGA+CGG	+	chr2.4:11266166-11266185	MS.gene31538:intron	30.0%
AACCAAAACATATGCCAAAA+AGG	-	chr2.4:11266073-11266092	None:intergenic	30.0%
ACTATCTTAGTTGTAAGCAA+GGG	-	chr2.4:11266594-11266613	None:intergenic	30.0%
ACTCAGATTTATAGAGTAGA+TGG	-	chr2.4:11268658-11268677	None:intergenic	30.0%
ACTCAGATTTATGGAGTATA+TGG	-	chr2.4:11268707-11268726	None:intergenic	30.0%
AGAAGAAGAAAAGAGAAGAA+AGG	+	chr2.4:11268837-11268856	MS.gene31538:CDS	30.0%
AGCACATTGTTATAGATACT+AGG	-	chr2.4:11267077-11267096	None:intergenic	30.0%
ATGACCAACTAACAATAACA+AGG	-	chr2.4:11266976-11266995	None:intergenic	30.0%
CAATGTCTTTCGAAAATAGA+AGG	-	chr2.4:11266763-11266782	None:intergenic	30.0%
CTATTGTTGATCACATTGAT+AGG	+	chr2.4:11266109-11266128	MS.gene31538:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	11265670	11268901	11265670	ID=MS.gene31538
chr2.4	mRNA	11265670	11268901	11265670	ID=MS.gene31538.t1;Parent=MS.gene31538
chr2.4	exon	11265670	11265868	11265670	ID=MS.gene31538.t1.exon1;Parent=MS.gene31538.t1
chr2.4	CDS	11265670	11265868	11265670	ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1
chr2.4	exon	11267015	11267282	11267015	ID=MS.gene31538.t1.exon2;Parent=MS.gene31538.t1
chr2.4	CDS	11267015	11267282	11267015	ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1
chr2.4	exon	11267750	11267966	11267750	ID=MS.gene31538.t1.exon3;Parent=MS.gene31538.t1
chr2.4	CDS	11267750	11267966	11267750	ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1
chr2.4	exon	11268257	11268372	11268257	ID=MS.gene31538.t1.exon4;Parent=MS.gene31538.t1
chr2.4	CDS	11268257	11268372	11268257	ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1
chr2.4	exon	11268835	11268901	11268835	ID=MS.gene31538.t1.exon5;Parent=MS.gene31538.t1
chr2.4	CDS	11268835	11268901	11268835	ID=cds.MS.gene31538.t1;Parent=MS.gene31538.t1

Gene Sequence

>MS.gene31538

ATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACTGAGAAAATCCACTTTTTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGGTTTGTGCTTTTGTTAATTTGGTTCCAAACCAAGTTTTAGATAAGGGAGGTGATTTTTTCATGTTAATTAGATATAATAGTTAGTTACAATAATTAGTTACAATAGTTAGTTAAGTTACACTAGATATAATAGTTAGTTAGTTGCATGCATGATTAGGCATTAAGCTTATTAGATCTTATGCACCGTAATCTTTTGGGGATCCTTTTTGGCATATGTTTTGGTTATTTTAGTGGTGAGTTCTATTGTTGATCACATTGATAGGTGGTTCAAGATGGACCAGTCTTTATAAACTGCTCAAAACTCTAATGGCAATAGACGGCGTCCCTCTGAAGTAGAAGCTCCCGGTCCTTCTTGTCCTTACAACCAGCGGCGAAGCTAGCAACTTTTTTACGAGGGGGCCAAATATAAAAATTTTATTTTTATTTTTTGTTGTAAGCAACTAAGTAATTTGCAAGAATTTTTTTCTTTATTTTATGTTTGAATCTTGTATTGACAAATTTCATTGCTAACAAAACTCTCTTTGTAGTTGTTAAAAAGACCTAAACTATACAAAAAATAAGATGAAATAAATCTATCAAGCTAACTTATGATAAATAAACTTATTTGAGGTAGCTAAATATATATTATTGGGGTAGCTAAATATAAATTATGCTTATTTATTCAAATAAAACAAAAAAAATTGGGGTAACCAATGCTACCCCATAGGTTTAACTTAGCTTCGCCCTTGCTTACAACTAAGATAGTGACTTGATCAGTGTCGGTTTGACAAAAACATGGAAAAACGGATATGAGTTGAGTTTTGAAGCACGCATATTCTTTTTCCCTTATTTTTGTTGAACTGACAACTGAGATTGATCAAGTCATCGTCTGAGTGACAAGGTGGATTGAGACCTTCTATTTTCGAAAGACATTGTCTACCATAACGATTTTCAAGTACCAGCCCATGGTAGACCCCACATACCAAATTAGTCCACCATAGAGTTTGCAAAACATAGACATGAGTGTAGGACATGGTGGGGGAAATTTTTTATATTAAGTTTGTTTATGTTTCTAATATCTACTGCAAAAAAAGGAAGACTAAATAAATAAAAGAAGACATTGAACCTTGTTATTGTTAGTTGGTCATGGGTTATCATCTAATGCAGATGTTCCCAGTGTTTCTGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATCCCTAGTATCTATAACAATGTGCTGCAGGAGCTGATTGTTCAACATCATTTAATGAGATACAAGACATCGTACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCTTATATTAATGCATTGAAGGAAGATCCAGAACAATACAGGTTTCATGATTGACTAAGCTGCCTTTGCTATATTGTTCTTTATTTTCTTTGTTGTTCTTGATCTAAATCTTTGACTCAATAATTGAAAAAACAATAATAGTAATAATAATTAATAACGGCTGTAAGTAAGCCACTGAAGACTATGTCCAGCAGAGGTTTGGGTTGTGTGCAGTTACAACCCTTTGATTACACGCAATCAGCCACTTCTAGACCATCTGATCAAGATCGCAACAGCCCTGATGTGGTTGACTGCATGCAGTCACACCGCACACAATCCAGAGTTTGTTTGCCAGAATCTAAGTTAGCATCATATTATTCCCAACCAGAAAGAATAGAAAAGTATTGACTTTACTTTGTATATGTTTTTGCTTAGTACTTGGTTACATAACAAGAAAATTTATCTGAAGGAAAATCTTTCAGCATAAATGAAAGCAGCATCAAATGATGTTTTATGTTACCCTCTACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGGTTTTGAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGTGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGTCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGGTAGCGCAATTCATTCAAGGCATCATGCATGATTTATTTGGAAATATTCAAATAAATGTTTAGTTTTCTATTATAGAATTATTGAAGTTGAACCTATAAGGTCTAGTTCTTATTTTAACAACCTCTAGAAGTTCCAATAAAGTAGTTTGAAGTGATTAAATGGATTTATCCTGATATGTTTTCCTCCTACAATTGCTCTAAGTAGCAATACTATAGAAGTGTCTATTACATGCATCTTTATGAATGTTTGTAGGATTTATGATAGTTAATCTTTGGTGCCAACATAACAGCTTTGTGCGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTACCGTATGCTGCTTTCCAAGTTGGTTCAAGCAAAAGAGCTGCAAAGGGAATTTATTGACAGGTAGACATCAAACATTTCAATTCCCTTCAGTTGTTCTCCTCTCTGTTATCATGGCTTTTCATTTTAAATTTGATATAACTAAACTGTAGTTACTACAGTTATAACTTTGCTAAGTGTGTGTTTGATTTTACGGTAGAGATCATCATAATTGATTTTTAGAAAACATGATATTGCAAAACTTGTTTATAACAAATTGAGAACGTGTTTCAAGCTTATAAAATTACCGTTGAATTTGTGAGAATCAGACTATTTTACTTATGAGCTATGACACAACCTGATATTCCATCTACTCTATAAATCTGAGTATGCCATTCACAAGTTAAAGTAATTTCCATATACTCCATAAATCTGAGTGTGCCATTCACAAGTTAAAGTCTAATAGATGAGACAGAGTTACAATTACAGCTTGATGGTTCTTCTCAGCAAGATTTAGATTCATATATATGTTTTTTTTTACCCCAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>MS.gene31538.t1

MAALTSLSFSATTQCSLRKSTFSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFSSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN