AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene064203


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064203.t1 MTR_4g045980 98.680 303 3 1 1 302 1 303 0.0 607
MS.gene064203.t1 MTR_2g089795 76.042 288 67 2 1 288 1 286 6.51e-159 444
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene064203.t1 AT2G20890 69.024 297 73 5 2 292 3 286 7.08e-143 404

Find 69 sgRNAs with CRISPR-Local

Find 370 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATGGAACCAACAATTT+TGG 0.156594 4.2:-56025949 MS.gene064203:CDS
CTTTCTTCCACTCGCTTCTT+TGG 0.228211 4.2:-56030864 MS.gene064203:CDS
TTCCAATTCCGTTTCCAAAT+TGG 0.229620 4.2:-56030778 MS.gene064203:CDS
AGAAGTTGAGGGGACTTTAA+AGG 0.233722 4.2:-56026060 MS.gene064203:CDS
TGAGGCCATTTCAAAATGTT+TGG 0.285166 4.2:-56024687 MS.gene064203:CDS
GGAACACCGAACAACCAATT+TGG 0.320518 4.2:+56030764 None:intergenic
CGGTGTTCCTCTTCTGTGTC+AGG 0.335981 4.2:-56030750 MS.gene064203:intron
AACCAATTTGGAAACGGAAT+TGG 0.346208 4.2:+56030776 None:intergenic
CTAACTCAAGAAGACGAAAA+AGG 0.351619 4.2:+56025976 None:intergenic
ACACTCATTCTAACCTGTAT+TGG 0.353763 4.2:+56027470 None:intergenic
CTCTAGATGAAAACTCAATC+AGG 0.355791 4.2:+56026087 None:intergenic
GCAGAAAGAGCGGGTGGAAA+TGG 0.361398 4.2:-56026032 MS.gene064203:CDS
CCGTTTCCAAATTGGTTGTT+CGG 0.370999 4.2:-56030770 MS.gene064203:CDS
GAGGCCATTTCAAAATGTTT+GGG 0.371107 4.2:-56024686 MS.gene064203:CDS
TGTATCTCATCAAATGTTGC+TGG 0.375097 4.2:+56027632 None:intergenic
TATGATCCTGTATTTGCTCT+TGG 0.383099 4.2:-56027595 MS.gene064203:CDS
CACTCATTCTAACCTGTATT+GGG 0.405031 4.2:+56027471 None:intergenic
CAGAAAGAGCGGGTGGAAAT+GGG 0.407573 4.2:-56026031 MS.gene064203:CDS
TCGCAATCTGCTTTCTAAGT+TGG 0.429863 4.2:-56025312 MS.gene064203:CDS
AGCATATCTTTGCGCTATGT+TGG 0.431929 4.2:-56030810 MS.gene064203:CDS
GAAGAAGAAAATAGAAGAAA+GGG 0.446296 4.2:-56024729 MS.gene064203:CDS
AGAAGAAGAAAATAGAAGAA+AGG 0.447419 4.2:-56024730 MS.gene064203:CDS
TATCTATAACTCCGTGCTAC+AGG 0.455869 4.2:-56027665 MS.gene064203:CDS
AGCATACATTAACGCATTGA+AGG 0.462951 4.2:-56027503 MS.gene064203:CDS
AGGAAGATCCAGCCCAATAC+AGG 0.469089 4.2:-56027483 MS.gene064203:intron
CAAAGAAGCGAGTGGAAGAA+AGG 0.475729 4.2:+56030865 None:intergenic
GTTCCGATTCAGATGCAGTT+CGG 0.478573 4.2:-56030842 MS.gene064203:CDS
AGAAAGGGCTGAACCACAAA+AGG 0.489128 4.2:-56024714 MS.gene064203:CDS
AAACCGAACTGCATCTGAAT+CGG 0.490474 4.2:+56030839 None:intergenic
CATTCTAACCTGTATTGGGC+TGG 0.493657 4.2:+56027475 None:intergenic
TGCTAAAGGAATACATTGAC+AGG 0.497269 4.2:-56025274 MS.gene064203:intron
TGCACAGAAGTTAGAAGAGT+GGG 0.505507 4.2:-56026132 MS.gene064203:CDS
AACTTTGTCTCAGAAACAGT+TGG 0.506286 4.2:+56027724 None:intergenic
ATCTAGAGAAGGAGAAGTTG+AGG 0.517674 4.2:-56026072 MS.gene064203:CDS
CCGAACAACCAATTTGGAAA+CGG 0.518129 4.2:+56030770 None:intergenic
TCAATGCGTTAATGTATGCT+TGG 0.520925 4.2:+56027506 None:intergenic
ACAAAGCCAAGAGCAAATAC+AGG 0.548987 4.2:+56027589 None:intergenic
TCTAGAGAAGGAGAAGTTGA+GGG 0.549571 4.2:-56026071 MS.gene064203:CDS
TGAACCACAAAAGGCTAATG+AGG 0.552905 4.2:-56024705 MS.gene064203:CDS
ACAAGCTAAAGAGCTGCTAA+AGG 0.557940 4.2:-56025288 MS.gene064203:CDS
AAGGATATTGCAGAAAGAGC+GGG 0.557982 4.2:-56026041 MS.gene064203:CDS
TTTCAAACCTGACACAGAAG+AGG 0.562747 4.2:+56030743 None:intergenic
CACTGTATATGACCAACTCA+TGG 0.564562 4.2:-56027566 MS.gene064203:CDS
TAGGATACCCTTCCATGAGT+TGG 0.569068 4.2:+56027554 None:intergenic
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 4.2:-56025999 MS.gene064203:CDS
GTATATGACCAACTCATGGA+AGG 0.575651 4.2:-56027562 MS.gene064203:CDS
GACAATGAGCTCCTGTAGCA+CGG 0.575789 4.2:+56027654 None:intergenic
TCTTGAGTTAGCAAATGCAA+TGG 0.577069 4.2:-56025964 MS.gene064203:CDS
AAAGAAGCGAGTGGAAGAAA+GGG 0.581082 4.2:+56030866 None:intergenic
TCTAGATGAAAACTCAATCA+GGG 0.581656 4.2:+56026088 None:intergenic
GAAGAAGTTACTGCGGCCAT+CGG 0.584598 4.2:+56030936 None:intergenic
TTTGTCTCAGAAACAGTTGG+AGG 0.595131 4.2:+56027727 None:intergenic
GCATCTCTATCCTCATCACT+AGG 0.603750 4.2:+56027535 None:intergenic
TTGTCTCAGAAACAGTTGGA+GGG 0.613813 4.2:+56027728 None:intergenic
AAAGGATATTGCAGAAAGAG+CGG 0.616391 4.2:-56026042 MS.gene064203:CDS
AGAAAGAGCGGGTGGAAATG+GGG 0.617727 4.2:-56026030 MS.gene064203:CDS
ATGCACAGAAGTTAGAAGAG+TGG 0.618365 4.2:-56026133 MS.gene064203:CDS
AGCACGGAGTTATAGATACT+AGG 0.618724 4.2:+56027670 None:intergenic
GTTAATGTATGCTTGGAAGA+TGG 0.618779 4.2:+56027513 None:intergenic
GAGCAAATACAGGATCATAA+CGG 0.626380 4.2:+56027599 None:intergenic
ATCGGAACCAAAGAAGCGAG+TGG 0.641210 4.2:+56030857 None:intergenic
TATATGACCAACTCATGGAA+GGG 0.644279 4.2:-56027561 MS.gene064203:CDS
GAGTTATAGATACTAGGTAT+CGG 0.644904 4.2:+56027676 None:intergenic
CTAGAGAAGGAGAAGTTGAG+GGG 0.650582 4.2:-56026070 MS.gene064203:CDS
CACTCACTCAATCTTCTCAG+AGG 0.654132 4.2:-56030899 MS.gene064203:CDS
GATATTGCAGAAAGAGCGGG+TGG 0.670621 4.2:-56026038 MS.gene064203:CDS
GGAAGGGTATCCTAGTGATG+AGG 0.675183 4.2:-56027545 MS.gene064203:CDS
GAAGCGAGTGGAAGAAAGGG+TGG 0.676271 4.2:+56030869 None:intergenic
TGAGAAAGAAGAAGTTACTG+CGG 0.719408 4.2:+56030929 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGAATAATTACTAAATTT+AGG + chr4.2:56025785-56025804 None:intergenic 10.0%
!! AATATAAATAAAGGAAATTA+TGG + chr4.2:56029911-56029930 None:intergenic 10.0%
!! ATATAAATAAAGGAAATTAT+GGG + chr4.2:56029910-56029929 None:intergenic 10.0%
!! ATATATAATAAAACAAGTAT+AGG + chr4.2:56029715-56029734 None:intergenic 10.0%
!! CAGTAAAAATTATAAAATAA+AGG + chr4.2:56025630-56025649 None:intergenic 10.0%
!! GAAATAAAAAAAACTTATTA+AGG - chr4.2:56029192-56029211 MS.gene064203:intron 10.0%
!!! AGTTAATATTTAATTTTTGA+AGG + chr4.2:56027437-56027456 None:intergenic 10.0%
!!! TAAATAATTTTTTCCTTAAA+TGG + chr4.2:56028867-56028886 None:intergenic 10.0%
!!! TCAATTTTCAATATAAATAA+AGG + chr4.2:56029920-56029939 None:intergenic 10.0%
!!! TTAGAATTTGATTTTTTAAT+TGG - chr4.2:56024960-56024979 MS.gene064203:intron 10.0%
!! AACTCAATAATTGAATATAA+TGG - chr4.2:56028189-56028208 MS.gene064203:intron 15.0%
!! ACATTCAAATATTATATCAT+AGG + chr4.2:56030391-56030410 None:intergenic 15.0%
!! AGTGCATATTTAATTATTAA+GGG + chr4.2:56028784-56028803 None:intergenic 15.0%
!! ATTTATTCAAAATCAAATCT+AGG + chr4.2:56029371-56029390 None:intergenic 15.0%
!! CATATTATTATCTTGATAAA+AGG + chr4.2:56027708-56027727 None:intergenic 15.0%
!! TAGTGCATATTTAATTATTA+AGG + chr4.2:56028785-56028804 None:intergenic 15.0%
!!! AACTTTTTTAAACAAAAAGT+TGG + chr4.2:56026458-56026477 None:intergenic 15.0%
!!! AATTTTTTAATAATGTATCG+AGG + chr4.2:56026867-56026886 None:intergenic 15.0%
!!! ACTTTTTTAAACAAAAAGTT+GGG + chr4.2:56026457-56026476 None:intergenic 15.0%
!!! AGTATAAGTTTTATTTTTCA+AGG + chr4.2:56028725-56028744 None:intergenic 15.0%
!!! ATTTTTTAATTGGAAGTATA+TGG - chr4.2:56024970-56024989 MS.gene064203:intron 15.0%
!!! GAATTTTGATTATATTAAAG+TGG - chr4.2:56029108-56029127 MS.gene064203:intron 15.0%
!!! GTATAAGTTTTATTTTTCAA+GGG + chr4.2:56028724-56028743 None:intergenic 15.0%
!!! TAATTTTAAAACACCATTTA+AGG - chr4.2:56028851-56028870 MS.gene064203:intron 15.0%
!!! TCTTTTTCTTTTTCTTTAAA+AGG - chr4.2:56027318-56027337 MS.gene064203:intron 15.0%
!! AAATTATAAAATAAAGGGCA+TGG + chr4.2:56025624-56025643 None:intergenic 20.0%
!! AACTGAAAAACTTAGTAAAT+AGG + chr4.2:56030610-56030629 None:intergenic 20.0%
!! AATTTGGATTCAAAAATCAT+TGG + chr4.2:56025489-56025508 None:intergenic 20.0%
!! ATATTTAATTATTAAGGGAG+GGG + chr4.2:56028779-56028798 None:intergenic 20.0%
!! CACATAAACTATTATTTATG+GGG + chr4.2:56025958-56025977 None:intergenic 20.0%
!! CATATTTAATTATTAAGGGA+GGG + chr4.2:56028780-56028799 None:intergenic 20.0%
!! CATGACAATTTAAATGAATT+GGG + chr4.2:56029671-56029690 None:intergenic 20.0%
!! CCACATAAACTATTATTTAT+GGG + chr4.2:56025959-56025978 None:intergenic 20.0%
!! TAAAAAAAACTTATTAAGGG+AGG - chr4.2:56029196-56029215 MS.gene064203:intron 20.0%
!! TATTATCTTGATAAAAGGAA+AGG + chr4.2:56027703-56027722 None:intergenic 20.0%
!! TCATGACAATTTAAATGAAT+TGG + chr4.2:56029672-56029691 None:intergenic 20.0%
!! TTAATTAATTAAAGTGACAG+AGG + chr4.2:56026410-56026429 None:intergenic 20.0%
!! TTATGTATTATGTGTATGTT+TGG + chr4.2:56025431-56025450 None:intergenic 20.0%
!! TTCTCATTTAACAATAATCA+TGG + chr4.2:56028519-56028538 None:intergenic 20.0%
!!! ACTATTGTATTTTCTGAAAA+AGG + chr4.2:56030666-56030685 None:intergenic 20.0%
!!! AGTGTATATTTTAACATAAG+AGG - chr4.2:56029324-56029343 MS.gene064203:intron 20.0%
!!! AGTGTATATTTTAACTTAAG+AGG + chr4.2:56028696-56028715 None:intergenic 20.0%
!!! ATGTAATTCTAGCTTTTTTT+AGG - chr4.2:56029252-56029271 MS.gene064203:intron 20.0%
!!! ATTGTAGATTTTAACATAAG+AGG - chr4.2:56029221-56029240 MS.gene064203:intron 20.0%
!!! CTTTTAATTGAAAATTAAGC+TGG - chr4.2:56030581-56030600 MS.gene064203:intron 20.0%
!!! GTGATCTTAATTTTATGAAA+AGG + chr4.2:56030521-56030540 None:intergenic 20.0%
!!! GTGTATATTTTAACATAAGA+GGG - chr4.2:56029325-56029344 MS.gene064203:intron 20.0%
!!! GTGTATATTTTAACTTAAGA+GGG + chr4.2:56028695-56028714 None:intergenic 20.0%
!!! TATATTCTATCTAATTTGTG+CGG + chr4.2:56027004-56027023 None:intergenic 20.0%
!!! TGTAATTCTAGCTTTTTTTA+GGG - chr4.2:56029253-56029272 MS.gene064203:intron 20.0%
!!! TGTATATTTTAACATAAGAG+GGG - chr4.2:56029326-56029345 MS.gene064203:intron 20.0%
!!! TTCATTTTTTTGAGAATTTG+AGG - chr4.2:56024912-56024931 MS.gene064203:intron 20.0%
!!! TTGAACTATAAATTTTTGTG+CGG - chr4.2:56025273-56025292 MS.gene064203:intron 20.0%
!!! TTGTAGATTTTAACATAAGA+GGG - chr4.2:56029222-56029241 MS.gene064203:intron 20.0%
!!! TTTACTTGATATTTTTGGAT+AGG - chr4.2:56026086-56026105 MS.gene064203:CDS 20.0%
!!! TTTTTATTTCTTTTCCCTTT+TGG + chr4.2:56027777-56027796 None:intergenic 20.0%
!!! TTTTTGAAGTTTTGTTTATG+AGG - chr4.2:56025013-56025032 MS.gene064203:intron 20.0%
! AACATAAGACAACACTAATA+TGG - chr4.2:56025702-56025721 MS.gene064203:intron 25.0%
! AAGAAATATAACTACAAGTC+TGG + chr4.2:56027291-56027310 None:intergenic 25.0%
! AGAAGAAGAAAATAGAAGAA+AGG - chr4.2:56030855-56030874 MS.gene064203:CDS 25.0%
! ATAGTTTATGTGGCTAAATA+AGG - chr4.2:56025966-56025985 MS.gene064203:CDS 25.0%
! ATTTACAGGAAAATTTCTCA+GGG + chr4.2:56026634-56026653 None:intergenic 25.0%
! CAAAACACTTTGATTATGTT+TGG - chr4.2:56025135-56025154 MS.gene064203:intron 25.0%
! CAAATCCAGAATTAGATTAT+TGG + chr4.2:56028263-56028282 None:intergenic 25.0%
! CAATAATCTAATTCTGGATT+TGG - chr4.2:56028261-56028280 MS.gene064203:intron 25.0%
! CCATACACAAAAATTATTAG+TGG + chr4.2:56030156-56030175 None:intergenic 25.0%
! CCCATAAATAATAGTTTATG+TGG - chr4.2:56025956-56025975 MS.gene064203:CDS 25.0%
! CTGTAAAAGTGATTTATGTT+TGG - chr4.2:56025229-56025248 MS.gene064203:intron 25.0%
! GAAGAAGAAAATAGAAGAAA+GGG - chr4.2:56030856-56030875 MS.gene064203:CDS 25.0%
! GAAGTATGAATTTGCAATTT+AGG + chr4.2:56027755-56027774 None:intergenic 25.0%
! GATTTCAGATTGATATTTAC+AGG + chr4.2:56026648-56026667 None:intergenic 25.0%
! GCATATTTAATTATTAAGGG+AGG + chr4.2:56028781-56028800 None:intergenic 25.0%
! GCCACATAAACTATTATTTA+TGG + chr4.2:56025960-56025979 None:intergenic 25.0%
! TATATATGTCGACAAAATAG+TGG - chr4.2:56028557-56028576 MS.gene064203:intron 25.0%
! TATTTAATTATTAAGGGAGG+GGG + chr4.2:56028778-56028797 None:intergenic 25.0%
! TATTTACAGGAAAATTTCTC+AGG + chr4.2:56026635-56026654 None:intergenic 25.0%
! TCATAACATGTCGAAAATTT+AGG + chr4.2:56030772-56030791 None:intergenic 25.0%
! TCATTTAACAATAATCATGG+AGG + chr4.2:56028516-56028535 None:intergenic 25.0%
! TCTTCTAACCTAAAAACATA+GGG + chr4.2:56027244-56027263 None:intergenic 25.0%
! TTCATCGGTAATAAACATTT+AGG - chr4.2:56030004-56030023 MS.gene064203:intron 25.0%
! TTGTTATCAATACTTAGTCA+TGG - chr4.2:56027810-56027829 MS.gene064203:intron 25.0%
!! AAAATTGATTCTGACATGTT+TGG + chr4.2:56025389-56025408 None:intergenic 25.0%
!! AATAATTTTTGTGTATGGCT+GGG - chr4.2:56030158-56030177 MS.gene064203:intron 25.0%
!! AATATGTAAGACAGAAGTAT+AGG - chr4.2:56027342-56027361 MS.gene064203:intron 25.0%
!! AGTGTATTCAAGATTCTTTT+AGG + chr4.2:56028666-56028685 None:intergenic 25.0%
!! ATTAGTGTTGTCTTATGTTT+TGG + chr4.2:56025701-56025720 None:intergenic 25.0%
!! CCACTAATAATTTTTGTGTA+TGG - chr4.2:56030153-56030172 MS.gene064203:intron 25.0%
!! CTAATATGTTTTGCATAAGA+GGG - chr4.2:56029295-56029314 MS.gene064203:intron 25.0%
!! CTGCATTTACTTGATATTTT+TGG - chr4.2:56026081-56026100 MS.gene064203:CDS 25.0%
!! GACAAAGTTAAATTTTCTCA+AGG - chr4.2:56027875-56027894 MS.gene064203:intron 25.0%
!! GTGTATTCAAGATTCTTTTA+GGG + chr4.2:56028665-56028684 None:intergenic 25.0%
!! TAATAATTTTTGTGTATGGC+TGG - chr4.2:56030157-56030176 MS.gene064203:intron 25.0%
!! TCGAATTGATTCTGTAAAAT+TGG - chr4.2:56025185-56025204 MS.gene064203:intron 25.0%
!! TCTAATATGTTTTGCATAAG+AGG - chr4.2:56029294-56029313 MS.gene064203:intron 25.0%
!! TGTATTCAAGATTCTTTTAG+GGG + chr4.2:56028664-56028683 None:intergenic 25.0%
!! TGTTGTAATTGGAAGTATAA+CGG - chr4.2:56028468-56028487 MS.gene064203:intron 25.0%
!! TTATTTTCCATGCTCTATAT+AGG + chr4.2:56026211-56026230 None:intergenic 25.0%
!! TTGTTCTTGAACTATCTTTT+AGG - chr4.2:56026304-56026323 MS.gene064203:intron 25.0%
!!! AAGTTTTATTTTTCAAGGGA+GGG + chr4.2:56028720-56028739 None:intergenic 25.0%
!!! ATGACTAAGTATTGATAACA+AGG + chr4.2:56027811-56027830 None:intergenic 25.0%
!!! CAATTATTGAGTTGAACATT+TGG + chr4.2:56028182-56028201 None:intergenic 25.0%
!!! GTAATTCTAGCTTTTTTTAG+GGG - chr4.2:56029254-56029273 MS.gene064203:intron 25.0%
!!! TAAGTTTTATTTTTCAAGGG+AGG + chr4.2:56028721-56028740 None:intergenic 25.0%
!!! TGTAGATTTTAACATAAGAG+GGG - chr4.2:56029223-56029242 MS.gene064203:intron 25.0%
!!! TGTTATGATTATAACTTGCT+TGG - chr4.2:56030784-56030803 MS.gene064203:CDS 25.0%
!!! TTACTAAGTTTTTCAGTTCA+GGG - chr4.2:56030612-56030631 MS.gene064203:intron 25.0%
!!! TTTACTAAGTTTTTCAGTTC+AGG - chr4.2:56030611-56030630 MS.gene064203:intron 25.0%
!!! TTTTTTGAGAATTTGAGGAT+TGG - chr4.2:56024917-56024936 MS.gene064203:intron 25.0%
AAACAAAAAGTTGGGCAAAA+GGG + chr4.2:56026449-56026468 None:intergenic 30.0%
AAACAAGTATAGGACTAAGT+TGG + chr4.2:56029705-56029724 None:intergenic 30.0%
AAACTGTGTATTCAATGCAT+TGG + chr4.2:56025874-56025893 None:intergenic 30.0%
AACAACTTAATAGCATTGCA+AGG + chr4.2:56030347-56030366 None:intergenic 30.0%
AACAAGTATAGGACTAAGTT+GGG + chr4.2:56029704-56029723 None:intergenic 30.0%
AAGCATATAAGGAAGCAATT+TGG + chr4.2:56025505-56025524 None:intergenic 30.0%
AGATGATTTAACACAGTCTA+TGG + chr4.2:56028238-56028257 None:intergenic 30.0%
AGCAGAAAAGCTTATAAAAG+TGG - chr4.2:56026239-56026258 MS.gene064203:intron 30.0%
AGTACTTATGATGTTCTCTT+TGG + chr4.2:56027048-56027067 None:intergenic 30.0%
ATCAGTGAAACTGTAGAATA+AGG + chr4.2:56026515-56026534 None:intergenic 30.0%
CCCACAATACTATTTATCTT+CGG - chr4.2:56029132-56029151 MS.gene064203:intron 30.0%
CCGAAGATAAATAGTATTGT+GGG + chr4.2:56029135-56029154 None:intergenic 30.0%
CTCTTCTAACCTAAAAACAT+AGG + chr4.2:56027245-56027264 None:intergenic 30.0%
CTTAAAATGTGGCAAACAAA+AGG + chr4.2:56026166-56026185 None:intergenic 30.0%
CTTCAGCTAATGAAATAAGT+TGG + chr4.2:56029822-56029841 None:intergenic 30.0%
CTTCCAATTACAACATTATC+AGG + chr4.2:56028463-56028482 None:intergenic 30.0%
GAATTACTCAGTAACTTTGA+AGG - chr4.2:56029970-56029989 MS.gene064203:intron 30.0%
GAGTTATAGATACTAGGTAT+CGG + chr4.2:56027912-56027931 None:intergenic 30.0%
GCAAATTCATACTTCCAAAA+GGG - chr4.2:56027760-56027779 MS.gene064203:intron 30.0%
GTGTTATCAATCTCAGATAA+CGG - chr4.2:56025545-56025564 MS.gene064203:intron 30.0%
TAAACAAAAAGTTGGGCAAA+AGG + chr4.2:56026450-56026469 None:intergenic 30.0%
TAAGAACTGACACATTAATG+CGG - chr4.2:56025069-56025088 MS.gene064203:intron 30.0%
TAATCTAATTCTGGATTTGG+AGG - chr4.2:56028264-56028283 MS.gene064203:intron 30.0%
TAGAATTCAATCAGTGGTAA+TGG - chr4.2:56027178-56027197 MS.gene064203:intron 30.0%
TAGCTTTCCAAACATGATTT+CGG - chr4.2:56028291-56028310 MS.gene064203:intron 30.0%
TCACAAATCACAAAATCATG+TGG + chr4.2:56028365-56028384 None:intergenic 30.0%
TCCGAAGATAAATAGTATTG+TGG + chr4.2:56029136-56029155 None:intergenic 30.0%
TCTAGATGAAAACTCAATCA+GGG + chr4.2:56029500-56029519 None:intergenic 30.0%
TCTCAATTGAATTATGTCGT+TGG - chr4.2:56025097-56025116 MS.gene064203:intron 30.0%
TCTCACCAATAATCTAATTC+TGG - chr4.2:56028255-56028274 MS.gene064203:intron 30.0%
TGCAAATTCATACTTCCAAA+AGG - chr4.2:56027759-56027778 MS.gene064203:intron 30.0%
TTAAAATTCCCGATACGATA+CGG - chr4.2:56026841-56026860 MS.gene064203:intron 30.0%
! AAGTTGTTCTCACTTCTTTT+GGG - chr4.2:56030359-56030378 MS.gene064203:intron 30.0%
! ACAAGAAACCCTATGTTTTT+AGG - chr4.2:56027233-56027252 MS.gene064203:intron 30.0%
! ATAAAATAAAGGGCATGGTT+AGG + chr4.2:56025619-56025638 None:intergenic 30.0%
! ATACGATACTTCACCATTTT+TGG - chr4.2:56027604-56027623 MS.gene064203:CDS 30.0%
! ATATGGACTGCACATAAATA+AGG - chr4.2:56025719-56025738 MS.gene064203:intron 30.0%
! ATTGAGTTTTCATCTAGAGA+AGG - chr4.2:56029502-56029521 MS.gene064203:intron 30.0%
! CATGTCGAAAATTTAGGTTA+AGG + chr4.2:56030766-56030785 None:intergenic 30.0%
! GTAACCTTTTCCAAAATTGT+TGG + chr4.2:56029649-56029668 None:intergenic 30.0%
! GTATCAATCCACAGAATTTT+GGG + chr4.2:56026596-56026615 None:intergenic 30.0%
! GTTCCTGATAATGTTGTAAT+TGG - chr4.2:56028457-56028476 MS.gene064203:intron 30.0%
! TAAGTTGTTCTCACTTCTTT+TGG - chr4.2:56030358-56030377 MS.gene064203:intron 30.0%
! TATAGGCCAGTGTATTTTAT+TGG + chr4.2:56026194-56026213 None:intergenic 30.0%
! TATCAATCCACAGAATTTTG+GGG + chr4.2:56026595-56026614 None:intergenic 30.0%
! TATTGGAGCATCTTAAAATG+TGG + chr4.2:56026177-56026196 None:intergenic 30.0%
! TGGTTGTGAAATTTTCATCT+CGG - chr4.2:56024990-56025009 MS.gene064203:intron 30.0%
!! AAAAAGTGTTGATCGAGATT+TGG - chr4.2:56030243-56030262 MS.gene064203:intron 30.0%
!! ACATAATCAAAGTGTTTTGC+AGG + chr4.2:56025134-56025153 None:intergenic 30.0%
!! GTTGTGAATAGTTCTGAATT+CGG - chr4.2:56027727-56027746 MS.gene064203:CDS 30.0%
!! TGTTCTATTTTCAAGAGTCT+TGG + chr4.2:56026011-56026030 None:intergenic 30.0%
!! TTGTCCCAAACATTTTGAAA+TGG + chr4.2:56030906-56030925 None:intergenic 30.0%
!!! ACTGATTAGTTTTCTAGAAC+TGG + chr4.2:56029786-56029805 None:intergenic 30.0%
!!! AGTTTTATTTTTCAAGGGAG+GGG + chr4.2:56028719-56028738 None:intergenic 30.0%
!!! ATATTTTAACATAAGAGGGG+AGG - chr4.2:56029329-56029348 MS.gene064203:intron 30.0%
!!! ATTTTAACTTAAGAGGGAAG+CGG + chr4.2:56028689-56028708 None:intergenic 30.0%
!!! CTGTGGTTTTTGTTTTTAAG+TGG - chr4.2:56028148-56028167 MS.gene064203:intron 30.0%
!!! TATAACTTGCTTGGTTTTTG+CGG - chr4.2:56030793-56030812 MS.gene064203:CDS 30.0%
!!! TATTTTAACATAAGAGGGGA+GGG - chr4.2:56029330-56029349 MS.gene064203:intron 30.0%
AAAAAATGAGCGATACGTGT+CGG + chr4.2:56027413-56027432 None:intergenic 35.0%
AAAGGATATTGCAGAAAGAG+CGG - chr4.2:56029543-56029562 MS.gene064203:intron 35.0%
AAATATAATCAGCAGACAGC+AGG - chr4.2:56026703-56026722 MS.gene064203:intron 35.0%
AACCAATTTGGAAACGGAAT+TGG + chr4.2:56024812-56024831 None:intergenic 35.0%
AACTTTGTCTCAGAAACAGT+TGG + chr4.2:56027864-56027883 None:intergenic 35.0%
AAGAACACTTAGCGAGATAA+CGG - chr4.2:56025586-56025605 MS.gene064203:intron 35.0%
AAGCCATGATACTCCAAAAA+TGG + chr4.2:56027620-56027639 None:intergenic 35.0%
ACAAGTAGAATCAATTCACG+AGG - chr4.2:56025338-56025357 MS.gene064203:CDS 35.0%
ACACTCATTCTAACCTGTAT+TGG + chr4.2:56028118-56028137 None:intergenic 35.0%
ACAGAGTAGAATTCAATCAG+TGG - chr4.2:56027172-56027191 MS.gene064203:intron 35.0%
AGAGAATAGCTATTGCTATG+TGG - chr4.2:56027208-56027227 MS.gene064203:intron 35.0%
AGATTCAGTCTTGAACTTCA+AGG + chr4.2:56030485-56030504 None:intergenic 35.0%
AGCATACATTAACGCATTGA+AGG - chr4.2:56028082-56028101 MS.gene064203:intron 35.0%
ATACCGATACGATACCAATA+CGG - chr4.2:56026802-56026821 MS.gene064203:intron 35.0%
ATATGACTATCATCAGTCTG+TGG - chr4.2:56030081-56030100 MS.gene064203:intron 35.0%
CACTCATTCTAACCTGTATT+GGG + chr4.2:56028117-56028136 None:intergenic 35.0%
CTAACTCAAGAAGACGAAAA+AGG + chr4.2:56029612-56029631 None:intergenic 35.0%
CTCTAGATGAAAACTCAATC+AGG + chr4.2:56029501-56029520 None:intergenic 35.0%
CTTATGATGTTCTCTTTGGA+TGG + chr4.2:56027044-56027063 None:intergenic 35.0%
GAGCAAATACAGGATCATAA+CGG + chr4.2:56027989-56028008 None:intergenic 35.0%
GAGGCCATTTCAAAATGTTT+GGG - chr4.2:56030899-56030918 MS.gene064203:CDS 35.0%
GATGCTCCAATAAAATACAC+TGG - chr4.2:56026185-56026204 MS.gene064203:intron 35.0%
GATTCAGTCTTGAACTTCAA+GGG + chr4.2:56030484-56030503 None:intergenic 35.0%
GTTAATGTATGCTTGGAAGA+TGG + chr4.2:56028075-56028094 None:intergenic 35.0%
TATAGTCGTTTCTTTGCAGT+AGG - chr4.2:56029586-56029605 MS.gene064203:intron 35.0%
TATATGACCAACTCATGGAA+GGG - chr4.2:56028024-56028043 MS.gene064203:intron 35.0%
TATGATCCTGTATTTGCTCT+TGG - chr4.2:56027990-56028009 MS.gene064203:intron 35.0%
TCAATGCGTTAATGTATGCT+TGG + chr4.2:56028082-56028101 None:intergenic 35.0%
TCGTAATTCAAGCATCACAT+GGG + chr4.2:56028755-56028774 None:intergenic 35.0%
TCTTGAGTTAGCAAATGCAA+TGG - chr4.2:56029621-56029640 MS.gene064203:intron 35.0%
TGAGAAAGAAGAAGTTACTG+CGG + chr4.2:56024659-56024678 None:intergenic 35.0%
TGAGGCCATTTCAAAATGTT+TGG - chr4.2:56030898-56030917 MS.gene064203:CDS 35.0%
TGCTAAAGGAATACATTGAC+AGG - chr4.2:56030311-56030330 MS.gene064203:intron 35.0%
TGTATCTCATCAAATGTTGC+TGG + chr4.2:56027956-56027975 None:intergenic 35.0%
TTCCAATTCCGTTTCCAAAT+TGG - chr4.2:56024807-56024826 MS.gene064203:intron 35.0%
! GGTATCAATCCACAGAATTT+TGG + chr4.2:56026597-56026616 None:intergenic 35.0%
! TAAGACAGAAGTATAGGTGT+CGG - chr4.2:56027348-56027367 MS.gene064203:intron 35.0%
! TGATTCTACTTGTTGAAGCT+AGG + chr4.2:56025331-56025350 None:intergenic 35.0%
! TGCAATGGAACCAACAATTT+TGG - chr4.2:56029636-56029655 MS.gene064203:intron 35.0%
! TGTGATTTGTGAATCACTCT+TGG - chr4.2:56028373-56028392 MS.gene064203:intron 35.0%
! TTATCAATCTCAGATAACGG+AGG - chr4.2:56025548-56025567 MS.gene064203:intron 35.0%
!! AATTTGTAGCTCTGATTGAG+TGG + chr4.2:56028328-56028347 None:intergenic 35.0%
!! ACAGTCAACTCACTTTTAGT+CGG + chr4.2:56025213-56025232 None:intergenic 35.0%
!! AGATTTTAACATAAGAGGGG+TGG - chr4.2:56029226-56029245 MS.gene064203:intron 35.0%
!! AGTTTTTCAGTTCAGGGTTT+AGG - chr4.2:56030618-56030637 MS.gene064203:intron 35.0%
!! ATTCAAGATTCTTTTAGGGG+AGG + chr4.2:56028661-56028680 None:intergenic 35.0%
!! ATTTGTAGCTCTGATTGAGT+GGG + chr4.2:56028327-56028346 None:intergenic 35.0%
!! ATTTTAACATAAGAGGGGAG+GGG - chr4.2:56029331-56029350 MS.gene064203:intron 35.0%
!! GATTTTAACATAAGAGGGGT+GGG - chr4.2:56029227-56029246 MS.gene064203:intron 35.0%
!! GGAACCAACAATTTTGGAAA+AGG - chr4.2:56029642-56029661 MS.gene064203:intron 35.0%
!! TATCAATCTCAGATAACGGA+GGG - chr4.2:56025549-56025568 MS.gene064203:intron 35.0%
!! TTGAGTTGAACATTTGGTGT+AGG + chr4.2:56028176-56028195 None:intergenic 35.0%
!!! ATTCTAGCTTTTTTTAGGGG+TGG - chr4.2:56029257-56029276 MS.gene064203:intron 35.0%
!!! TCACCATTTTTGGAGTATCA+TGG - chr4.2:56027614-56027633 MS.gene064203:CDS 35.0%
!!! TTCTAGCTTTTTTTAGGGGT+GGG - chr4.2:56029258-56029277 MS.gene064203:intron 35.0%
AAACAATGACCGATACGTGT+CGG + chr4.2:56027496-56027515 None:intergenic 40.0%
AAACCGAACTGCATCTGAAT+CGG + chr4.2:56024749-56024768 None:intergenic 40.0%
AAAGAAGCGAGTGGAAGAAA+GGG + chr4.2:56024722-56024741 None:intergenic 40.0%
AAGGAGAATGCTGCATTCAT+CGG - chr4.2:56029989-56030008 MS.gene064203:intron 40.0%
AAGGATATTGCAGAAAGAGC+GGG - chr4.2:56029544-56029563 MS.gene064203:intron 40.0%
ACAAAGCCAAGAGCAAATAC+AGG + chr4.2:56027999-56028018 None:intergenic 40.0%
ACAAGCTAAAGAGCTGCTAA+AGG - chr4.2:56030297-56030316 MS.gene064203:intron 40.0%
AGAAGTTGAGGGGACTTTAA+AGG - chr4.2:56029525-56029544 MS.gene064203:intron 40.0%
AGCACGGAGTTATAGATACT+AGG + chr4.2:56027918-56027937 None:intergenic 40.0%
AGCATATCTTTGCGCTATGT+TGG - chr4.2:56024775-56024794 MS.gene064203:intron 40.0%
AGGATCATGTGTTTGATGCT+TGG - chr4.2:56025033-56025052 MS.gene064203:intron 40.0%
ATAGAACACACACACATCTC+AGG - chr4.2:56026023-56026042 MS.gene064203:CDS 40.0%
ATCTAGAGAAGGAGAAGTTG+AGG - chr4.2:56029513-56029532 MS.gene064203:intron 40.0%
ATGCACAGAAGTTAGAAGAG+TGG - chr4.2:56029452-56029471 MS.gene064203:intron 40.0%
ATGTTCAGGCTTCATTAGAG+GGG - chr4.2:56029879-56029898 MS.gene064203:intron 40.0%
CACTGTATATGACCAACTCA+TGG - chr4.2:56028019-56028038 MS.gene064203:intron 40.0%
CAGTCTATGGTGACTTTCTA+TGG + chr4.2:56028225-56028244 None:intergenic 40.0%
CATGTTCAGGCTTCATTAGA+GGG - chr4.2:56029878-56029897 MS.gene064203:intron 40.0%
CCGAACAACCAATTTGGAAA+CGG + chr4.2:56024818-56024837 None:intergenic 40.0%
CCGTTTCCAAATTGGTTGTT+CGG - chr4.2:56024815-56024834 MS.gene064203:intron 40.0%
CCTTATATGCTTGAGCTTTG+CGG - chr4.2:56025513-56025532 MS.gene064203:intron 40.0%
CGTAATTCAAGCATCACATG+GGG + chr4.2:56028754-56028773 None:intergenic 40.0%
CTAGTGATATACTGAGCACT+TGG - chr4.2:56030695-56030714 MS.gene064203:intron 40.0%
CTTTCATACATGACAGAGTG+TGG - chr4.2:56026677-56026696 MS.gene064203:intron 40.0%
GGAGTATAAGTAAGCTGTGT+CGG - chr4.2:56027369-56027388 MS.gene064203:intron 40.0%
GTAATTCAAGCATCACATGG+GGG + chr4.2:56028753-56028772 None:intergenic 40.0%
GTACTGAGTTCAAACAACCT+CGG - chr4.2:56026367-56026386 MS.gene064203:intron 40.0%
GTATATGACCAACTCATGGA+AGG - chr4.2:56028023-56028042 MS.gene064203:intron 40.0%
GTCGTAATTCAAGCATCACA+TGG + chr4.2:56028756-56028775 None:intergenic 40.0%
TAAAATGCACAAGAGGGACT+TGG - chr4.2:56026113-56026132 MS.gene064203:CDS 40.0%
TACTGAGTTCAAACAACCTC+GGG - chr4.2:56026368-56026387 MS.gene064203:intron 40.0%
TATCTATAACTCCGTGCTAC+AGG - chr4.2:56027920-56027939 MS.gene064203:intron 40.0%
TCGCAATCTGCTTTCTAAGT+TGG - chr4.2:56030273-56030292 MS.gene064203:intron 40.0%
TCTAGAGAAGGAGAAGTTGA+GGG - chr4.2:56029514-56029533 MS.gene064203:intron 40.0%
TGAACCACAAAAGGCTAATG+AGG - chr4.2:56030880-56030899 MS.gene064203:CDS 40.0%
TGAGTGTTTGTATGTCTCTG+TGG - chr4.2:56028131-56028150 MS.gene064203:intron 40.0%
TGCACAGAAGTTAGAAGAGT+GGG - chr4.2:56029453-56029472 MS.gene064203:intron 40.0%
TGGAATGATCGCTTACTTCA+GGG - chr4.2:56030832-56030851 MS.gene064203:CDS 40.0%
TGTTTGAACTCAGTACCTTG+AGG + chr4.2:56026363-56026382 None:intergenic 40.0%
TTGGAATGATCGCTTACTTC+AGG - chr4.2:56030831-56030850 MS.gene064203:CDS 40.0%
TTGTCTCAGAAACAGTTGGA+GGG + chr4.2:56027860-56027879 None:intergenic 40.0%
TTTCAAACCTGACACAGAAG+AGG + chr4.2:56024845-56024864 None:intergenic 40.0%
TTTGTCTCAGAAACAGTTGG+AGG + chr4.2:56027861-56027880 None:intergenic 40.0%
! AAGTCCCTCTTGTGCATTTT+AGG + chr4.2:56026114-56026133 None:intergenic 40.0%
! AATTTTTGCCCCTCTACAAG+TGG - chr4.2:56025403-56025422 MS.gene064203:intron 40.0%
! ACTTTTCCGATACGCGTATT+GGG - chr4.2:56027545-56027564 MS.gene064203:CDS 40.0%
! ATGTTTGGTTCCACTTGTAG+AGG + chr4.2:56025416-56025435 None:intergenic 40.0%
! ATGTTTTGCATAAGAGGGCA+GGG - chr4.2:56029300-56029319 MS.gene064203:intron 40.0%
! GATCTCTCTTTTCCATGTTC+AGG - chr4.2:56029865-56029884 MS.gene064203:intron 40.0%
! TACGCGTATCGGAAAAGTAT+CGG + chr4.2:56027543-56027562 None:intergenic 40.0%
! TACTTTTCCGATACGCGTAT+TGG - chr4.2:56027544-56027563 MS.gene064203:CDS 40.0%
! TATGTTTTGCATAAGAGGGC+AGG - chr4.2:56029299-56029318 MS.gene064203:intron 40.0%
! TGTTTGGTTCCACTTGTAGA+GGG + chr4.2:56025415-56025434 None:intergenic 40.0%
! TTTTCGACCCCAAAATTCTG+TGG - chr4.2:56026585-56026604 MS.gene064203:intron 40.0%
!! AGTTTAGCCTTGTAACCTCA+AGG - chr4.2:56026345-56026364 MS.gene064203:intron 40.0%
!!! TCTAGCTTTTTTTAGGGGTG+GGG - chr4.2:56029259-56029278 MS.gene064203:intron 40.0%
AAATGTTGACGAGTGTCCCA+GGG + chr4.2:56025935-56025954 None:intergenic 45.0%
AAATTCCCGTATCGCCGTAT+TGG + chr4.2:56026819-56026838 None:intergenic 45.0%
ACGATACCAATACGGCGATA+CGG - chr4.2:56026810-56026829 MS.gene064203:intron 45.0%
ACTGAGTTCAAACAACCTCG+GGG - chr4.2:56026369-56026388 MS.gene064203:intron 45.0%
AGAAAGGGCTGAACCACAAA+AGG - chr4.2:56030871-56030890 MS.gene064203:CDS 45.0%
AGGTGCCTAAAATGCACAAG+AGG - chr4.2:56026106-56026125 MS.gene064203:CDS 45.0%
ATACGCGTATTGGGACGTAT+TGG - chr4.2:56027554-56027573 MS.gene064203:CDS 45.0%
ATACGTCCCAATACGCGTAT+CGG + chr4.2:56027554-56027573 None:intergenic 45.0%
ATACGTTCCGATACGCGTAT+CGG + chr4.2:56027473-56027492 None:intergenic 45.0%
ATCGGTATCGTGTCAGGTAT+CGG + chr4.2:56026790-56026809 None:intergenic 45.0%
CAAAGAAGCGAGTGGAAGAA+AGG + chr4.2:56024723-56024742 None:intergenic 45.0%
CACTCACTCAATCTTCTCAG+AGG - chr4.2:56024686-56024705 MS.gene064203:CDS 45.0%
CATTCTAACCTGTATTGGGC+TGG + chr4.2:56028113-56028132 None:intergenic 45.0%
CCATGTTCAGGCTTCATTAG+AGG - chr4.2:56029877-56029896 MS.gene064203:intron 45.0%
CCGCAAAGCTCAAGCATATA+AGG + chr4.2:56025516-56025535 None:intergenic 45.0%
CCTCTAATGAAGCCTGAACA+TGG + chr4.2:56029880-56029899 None:intergenic 45.0%
CGCACACAAATTGCTGGTAA+AGG - chr4.2:56030028-56030047 MS.gene064203:intron 45.0%
CTAGAGAAGGAGAAGTTGAG+GGG - chr4.2:56029515-56029534 MS.gene064203:intron 45.0%
CTCAGGGACACAACAAAAGT+TGG + chr4.2:56026618-56026637 None:intergenic 45.0%
CTCAGTACCTTGAGGTTACA+AGG + chr4.2:56026355-56026374 None:intergenic 45.0%
CTCTGATTGAGTGGGATTTG+GGG + chr4.2:56028319-56028338 None:intergenic 45.0%
CTTTCTTCCACTCGCTTCTT+TGG - chr4.2:56024721-56024740 MS.gene064203:CDS 45.0%
GCATCTCTATCCTCATCACT+AGG + chr4.2:56028053-56028072 None:intergenic 45.0%
GCTCTGATTGAGTGGGATTT+GGG + chr4.2:56028320-56028339 None:intergenic 45.0%
GGAACACCGAACAACCAATT+TGG + chr4.2:56024824-56024843 None:intergenic 45.0%
GGTGCCTAAAATGCACAAGA+GGG - chr4.2:56026107-56026126 MS.gene064203:CDS 45.0%
GTTCCGATTCAGATGCAGTT+CGG - chr4.2:56024743-56024762 MS.gene064203:intron 45.0%
TACGCGTATTGGGACGTATT+GGG - chr4.2:56027555-56027574 MS.gene064203:CDS 45.0%
TACTTCTCCGATACGCGTAT+CGG - chr4.2:56027463-56027482 MS.gene064203:intron 45.0%
TAGGATACCCTTCCATGAGT+TGG + chr4.2:56028034-56028053 None:intergenic 45.0%
TGATATACTGAGCACTTGGC+AGG - chr4.2:56030699-56030718 MS.gene064203:intron 45.0%
TGGGGTTCCGAAATCATGTT+TGG + chr4.2:56028301-56028320 None:intergenic 45.0%
TTAGGACGCACACAAATTGC+TGG - chr4.2:56030022-56030041 MS.gene064203:intron 45.0%
! ACACTGGCCTATATAGAGCA+TGG - chr4.2:56026201-56026220 MS.gene064203:intron 45.0%
! AGCTCTGATTGAGTGGGATT+TGG + chr4.2:56028321-56028340 None:intergenic 45.0%
! CATGTTTGGTTGCTTTCGAG+TGG + chr4.2:56025375-56025394 None:intergenic 45.0%
! GTTTGGTTCCACTTGTAGAG+GGG + chr4.2:56025414-56025433 None:intergenic 45.0%
! TACGCGTATCGGAGAAGTAT+CGG + chr4.2:56027462-56027481 None:intergenic 45.0%
! TATCGGTATCGGATACGTGT+CGG - chr4.2:56027581-56027600 MS.gene064203:CDS 45.0%
! TATCGTATCGGTATCGTGTC+AGG + chr4.2:56026796-56026815 None:intergenic 45.0%
! TCGCCGTATTGGTATCGTAT+CGG + chr4.2:56026808-56026827 None:intergenic 45.0%
! TCGCTAAGTGTTCTTGCTGT+CGG + chr4.2:56025581-56025600 None:intergenic 45.0%
! TGGAGTATCATGGCTTCAGA+GGG - chr4.2:56027624-56027643 MS.gene064203:CDS 45.0%
! TGTTTTGCATAAGAGGGCAG+GGG - chr4.2:56029301-56029320 MS.gene064203:intron 45.0%
! TTGGAGTATCATGGCTTCAG+AGG - chr4.2:56027623-56027642 MS.gene064203:CDS 45.0%
!! ACGCGTATCGGAAAAGTATC+GGG + chr4.2:56027542-56027561 None:intergenic 45.0%
!!! ATGGCCTCATTAGCCTTTTG+TGG + chr4.2:56030887-56030906 None:intergenic 45.0%
!!! GCGGCTGGATTTTGATTCTT+TGG - chr4.2:56030812-56030831 MS.gene064203:CDS 45.0%
!! AAATAAAAAAAACTTATTAA+GGG - chr4.2:56029193-56029212 MS.gene064203:intron 5.0%
!! AGTAAAAATTATAAAATAAA+GGG + chr4.2:56025629-56025648 None:intergenic 5.0%
!!! ATATTTTAAAATTTATAGTA+AGG - chr4.2:56029029-56029048 MS.gene064203:intron 5.0%
AATGTTGACGAGTGTCCCAG+GGG + chr4.2:56025934-56025953 None:intergenic 50.0%
ACGCGTATTGGGACGTATTG+GGG - chr4.2:56027556-56027575 MS.gene064203:CDS 50.0%
AGAAAGAGCGGGTGGAAATG+GGG - chr4.2:56029555-56029574 MS.gene064203:intron 50.0%
AGGAAGATCCAGCCCAATAC+AGG - chr4.2:56028102-56028121 MS.gene064203:intron 50.0%
ATCGGAACCAAAGAAGCGAG+TGG + chr4.2:56024731-56024750 None:intergenic 50.0%
CAGAAAGAGCGGGTGGAAAT+GGG - chr4.2:56029554-56029573 MS.gene064203:intron 50.0%
CGATACCAATACGGCGATAC+GGG - chr4.2:56026811-56026830 MS.gene064203:intron 50.0%
CTGAGTTCAAACAACCTCGG+GGG - chr4.2:56026370-56026389 MS.gene064203:intron 50.0%
CTTGTTAACGAGTGTCCCCT+GGG - chr4.2:56025744-56025763 MS.gene064203:intron 50.0%
GAAATGTTGACGAGTGTCCC+AGG + chr4.2:56025936-56025955 None:intergenic 50.0%
GACAATGAGCTCCTGTAGCA+CGG + chr4.2:56027934-56027953 None:intergenic 50.0%
GATATTGCAGAAAGAGCGGG+TGG - chr4.2:56029547-56029566 MS.gene064203:intron 50.0%
GCACTTGGCAGGTTATAGTC+AGG - chr4.2:56030710-56030729 MS.gene064203:intron 50.0%
GGAACGTATCCGACACGTAT+CGG - chr4.2:56027484-56027503 MS.gene064203:CDS 50.0%
GTATCGAGGCCGTATCGTAT+CGG + chr4.2:56026853-56026872 None:intergenic 50.0%
TATCGAGGCCGTATCGTATC+GGG + chr4.2:56026852-56026871 None:intergenic 50.0%
TCGGTATCGTGTCAGGTATC+GGG + chr4.2:56026789-56026808 None:intergenic 50.0%
TCTGTGCATCTACTCTGCAG+AGG + chr4.2:56029441-56029460 None:intergenic 50.0%
TCTTGTTAACGAGTGTCCCC+TGG - chr4.2:56025743-56025762 MS.gene064203:intron 50.0%
TTGTTAACGAGTGTCCCCTG+GGG - chr4.2:56025745-56025764 MS.gene064203:intron 50.0%
! GGAGTATCATGGCTTCAGAG+GGG - chr4.2:56027625-56027644 MS.gene064203:CDS 50.0%
! GTATTGGGGCGTATCGGTAT+CGG - chr4.2:56027570-56027589 MS.gene064203:CDS 50.0%
!! AAGTGCTTAAAGAGTGCCCC+TGG - chr4.2:56025915-56025934 MS.gene064203:intron 50.0%
!! ACGCGTATCGGAGAAGTATC+GGG + chr4.2:56027461-56027480 None:intergenic 50.0%
!! ACTTGCTTGGTTTTTGCGGC+TGG - chr4.2:56030797-56030816 MS.gene064203:CDS 50.0%
!! AGTGCTTAAAGAGTGCCCCT+GGG - chr4.2:56025916-56025935 MS.gene064203:intron 50.0%
!! CGACTTGCTATTTGTGCGAG+TGG - chr4.2:56026136-56026155 MS.gene064203:CDS 50.0%
!! GGAAGGGTATCCTAGTGATG+AGG - chr4.2:56028040-56028059 MS.gene064203:intron 50.0%
AGTTCAAACAACCTCGGGGG+CGG - chr4.2:56026373-56026392 MS.gene064203:intron 55.0%
CGGTGTTCCTCTTCTGTGTC+AGG - chr4.2:56024835-56024854 MS.gene064203:intron 55.0%
GAAGCGAGTGGAAGAAAGGG+TGG + chr4.2:56024719-56024738 None:intergenic 55.0%
GCAGAAAGAGCGGGTGGAAA+TGG - chr4.2:56029553-56029572 MS.gene064203:intron 55.0%
TCAGCAGACAGCAGGTGATG+CGG - chr4.2:56026711-56026730 MS.gene064203:intron 55.0%
TGGGACGTATTGGGGCGTAT+CGG - chr4.2:56027564-56027583 MS.gene064203:CDS 55.0%
! CGGTATCGTGTCAGGTATCG+GGG + chr4.2:56026788-56026807 None:intergenic 55.0%
!! ATCCTCAAAGAGTGCCCCAG+GGG + chr4.2:56025762-56025781 None:intergenic 55.0%
!! GATCCTCAAAGAGTGCCCCA+GGG + chr4.2:56025763-56025782 None:intergenic 55.0%
CCTCGGGGGCGGTTGTAAAA+TGG - chr4.2:56026384-56026403 MS.gene064203:intron 60.0%
! CCATTTTACAACCGCCCCCG+AGG + chr4.2:56026387-56026406 None:intergenic 60.0%
!! GGATCCTCAAAGAGTGCCCC+AGG + chr4.2:56025764-56025783 None:intergenic 60.0%
! GTCCCCTGGGGCACTCTTTG+AGG - chr4.2:56025757-56025776 MS.gene064203:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 56024652 56030955 56024652 ID=MS.gene064203
chr4.2 mRNA 56024652 56030955 56024652 ID=MS.gene064203.t1;Parent=MS.gene064203
chr4.2 exon 56030751 56030955 56030751 ID=MS.gene064203.t1.exon1;Parent=MS.gene064203.t1
chr4.2 CDS 56030751 56030955 56030751 ID=cds.MS.gene064203.t1;Parent=MS.gene064203.t1
chr4.2 exon 56027484 56027751 56027484 ID=MS.gene064203.t1.exon2;Parent=MS.gene064203.t1
chr4.2 CDS 56027484 56027751 56027484 ID=cds.MS.gene064203.t1;Parent=MS.gene064203.t1
chr4.2 exon 56025944 56026160 56025944 ID=MS.gene064203.t1.exon3;Parent=MS.gene064203.t1
chr4.2 CDS 56025944 56026160 56025944 ID=cds.MS.gene064203.t1;Parent=MS.gene064203.t1
chr4.2 exon 56025275 56025390 56025275 ID=MS.gene064203.t1.exon4;Parent=MS.gene064203.t1
chr4.2 CDS 56025275 56025390 56025275 ID=cds.MS.gene064203.t1;Parent=MS.gene064203.t1
chr4.2 exon 56024652 56024754 56024652 ID=MS.gene064203.t1.exon5;Parent=MS.gene064203.t1
chr4.2 CDS 56024652 56024754 56024652 ID=cds.MS.gene064203.t1;Parent=MS.gene064203.t1
Gene Sequence

>MS.gene064203

ATGGCCGCAGTAACTTCTTCTTTCTCATTCTCAACACTCACTCAATCTTCTCAGAGGAAATTAACCACCCTTTCTTCCACTCGCTTCTTTGGTTCCGATTCAGATGCAGTTCGGTTTCGTTTGAGCATATCTTTGCGCTATGTTGGAGTTCGAACTTCCAATTCCGTTTCCAAATTGGTTGTTCGGTGTTCCTCTTCTGTGTCAGGTTTGAAATAAAAAATGAATTTTTATTTTTTATTTTTATGATTTATGCATTTCTTTTCATTTTTTTGAGAATTTGAGGATTGGTTTTTTATTCATATTTGTCTTTAGAATTTGATTTTTTAATTGGAAGTATATGGTTGTGAAATTTTCATCTCGGTTTTTGAAGTTTTGTTTATGAGGATCATGTGTTTGATGCTTGGTTTGACTTAAAATTAAGAACTGACACATTAATGCGGAACATTCTCAATTGAATTATGTCGTTGGATTTCTTGCAACCTGCAAAACACTTTGATTATGTTTGGTTATGAAGTGACAAAAATTGATTTTGATCGAATTGATTCTGTAAAATTGGTGCCGACTAAAAGTGAGTTGACTGTAAAAGTGATTTATGTTTGGATACATTTTTGTAATAGTGAGTTGAACTATAAATTTTTGTGCGGAAAGATCAATTCTATAATCAAAAGCTACAAATCCTAGCTTCAACAAGTAGAATCAATTCACGAGGCAAAATCATTTCCACTCGAAAGCAACCAAACATGTCAGAATCAATTTTTGCCCCTCTACAAGTGGAACCAAACATACACATAATACATAAGATTCTTCTATTTGTTTGATTGTGCATGAGTTTTTCCAATGATTTTTGAATCCAAATTGCTTCCTTATATGCTTGAGCTTTGCGGTAGATAGTAGTGTTATCAATCTCAGATAACGGAGGGTAGCAACCGACAGCAAGAACACTTAGCGAGATAACGGATAGTAGCCTAACCATGCCCTTTATTTTATAATTTTTACTGTATACATAAAATCTGAATAGCATGCTCTATATTATAAACACTGATGCTCCAAAACATAAGACAACACTAATATGGACTGCACATAAATAAGGATCTTGTTAACGAGTGTCCCCTGGGGCACTCTTTGAGGATCCTAAATTTAGTAATTATTCTTTTAAAAAGTCATCTGTTGAATCCTAAATTTAGTAATTATTCTTTTAAAAAGTCATCTGTTACAATTTCCAATGCATTGAATACACAGTTTTTCATAAAAACTTACTATTTAAAGTGCTTAAAGAGTGCCCCTGGGACACTCGTCAACATTTCCCCATAAATAATAGTTTATGTGGCTAAATAAGGAGACATCACAGACATAAAGCCAAGACTCTTGAAAATAGAACACACACACATCTCAGGAGAAAATACATTTCGTTTTCTCTGAAATTTTATCTCTGCATTTACTTGATATTTTTGGATAGGTGCCTAAAATGCACAAGAGGGACTTGGCGACTTGCTATTTGTGCGAGTGGAACTCCTTTTGTTTGCCACATTTTAAGATGCTCCAATAAAATACACTGGCCTATATAGAGCATGGAAAATAACTTTCTTCAGCAGAAAAGCTTATAAAAGTGGCTTTTTAATGTACACAAATTATTGCAATTGATAGCATTGAAGTTGTTCTTGAACTATCTTTTAGGTGCTAGCTCAACAGTAAGAGTTTAGCCTTGTAACCTCAAGGTACTGAGTTCAAACAACCTCGGGGGCGGTTGTAAAATGGCCTCTGTCACTTTAATTAATTAATTAATAAAAAAATTCGCCCTTTTGCCCAACTTTTTGTTTAAAAAAGTTGTTCTTGAACTACTTTAAAAATTAGATGTATGAACCTTATTCTACAGTTTCACTGATATCAGTGTATGTAATTGCTTTTAGTCTTGCGTAGAATGTAAGCAACATATTTTTCGACCCCAAAATTCTGTGGATTGATACCAACTTTTGTTGTGTCCCTGAGAAATTTTCCTGTAAATATCAATCTGAAATCTTTGATTCTCTTTCATACATGACAGAGTGTGGTTTAAATATAATCAGCAGACAGCAGGTGATGCGGTTTTAAAAATAAAACGTTCTTAGAAATATGTGTGTGTGTGTGTCTATGAAGCCCCGATACCTGACACGATACCGATACGATACCAATACGGCGATACGGGAATTTTTTTAAAATTCCCGATACGATACGGCCTCGATACATTATTAAAAAATTAAATTTAAAATTAATAGTATAAGTGCACAATGTATAAACATAACTAAAAATGATAATAAACAAACATTCACATTAATGAAAATGATCAAAACAAGTGACAATTACATATTTTTTCCGCACAAATTAGATAGAATATAGCTAAACATCATTAGTACCATCCAAAGAGAACATCATAAGTACTATAAAAAAAAGAACATCTTTGTCTAATGTTGACTACTTAACAGTTAACACTAATTTATATCGAAAACAAACAGCAGAAGAAACGTAACATTAGAGAGAAGAGAAACAGAGTAGAATTCAATCAGTGGTAATGGTTAGAAAAGAGAATAGCTATTGCTATGTGGTGACAAGAAACCCTATGTTTTTAGGTTAGAAGAGACAATATGATTTTGATAGCGCTGCCAGACTTGTAGTTATATTTCTTATTATTTTCTTTTTCTTTTTCTTTAAAAGGAAATATGTAAGACAGAAGTATAGGTGTCGGAGTATAAGTAAGCTGTGTCGGAGTACAAATTAGTCGTATCCGACACGTATCGCTCATTTTTTTCCTTCAAAAATTAAATATTAACTGCCCGATACTTCTCCGATACGCGTATCGGAACGTATCCGACACGTATCGGTCATTGTTTTTTAAAAAAATAAATATTAATTGCCCGATACTTTTCCGATACGCGTATTGGGACGTATTGGGGCGTATCGGTATCGGATACGTGTCGGATACGATACTTCACCATTTTTGGAGTATCATGGCTTCAGAGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAGCAATCCTTTCCTTTTATCAAGATAATAATATGTTGTGAATAGTTCTGAATTCGGTTCCTAAATTGCAAATTCATACTTCCAAAAGGGAAAAGAAATAAAAATAGAAAATAAACCTTGTTATCAATACTTAGTCATGGATGTCTACATACTTGATCTGCAGACCCTCCAACTGTTTCTGAGACAAAGTTAAATTTTCTCAAGGCATATAAGCGACCGATACCTAGTATCTATAACTCCGTGCTACAGGAGCTCATTGTCCAGCAACATTTGATGAGATACAAGAAGTCATACCGTTATGATCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGACCAACTCATGGAAGGGTATCCTAGTGATGAGGATAGAGATGCCATCTTCCAAGCATACATTAACGCATTGAAGGAAGATCCAGCCCAATACAGGTTAGAATGAGTGTTTGTATGTCTCTGTGGTTTTTGTTTTTAAGTGGTTCCTACACCAAATGTTCAACTCAATAATTGAATATAATGGCTGTAAGTCACCATAGAAAGTCACCATAGACTGTGTTAAATCATCTCACCAATAATCTAATTCTGGATTTGGAGGAGAATAGCTTTCCAAACATGATTTCGGAACCCCAAATCCCACTCAATCAGAGCTACAAATTGTATTATCTGTCTGCCACATGATTTTGTGATTTGTGAATCACTCTTGGTTTGCTCTACTATATAGTTACTTGTACTAGTTGCTCAAAATATTTTGTTGATTCTTCTGTAGTTCCTGATAATGTTGTAATTGGAAGTATAACGGATCATGAAAACATCATTAATGTCCTCCATGATTATTGTTAAATGAGAAACATAAACTAATTTTTAGTATATATGTCGACAAAATAGTGGAGTGAATTAATTTTCAAGATACAAATTTGCATCTCATGAAACATCAATTAAGTTAAAAAGAAGAGTAAATTACACTCTCCTCCCCTAAAAGAATCTTGAATACACTCCGCTTCCCTCTTAAGTTAAAATATACACTCCCCTCCCTTGAAAAATAAAACTTATACTCACATCCCCCATGTGATGCTTGAATTACGACCCCCTCCCTTAATAATTAAATATGCACTACAATTTAATCTATTTTAACATAAATAAATAATTTTACGATATCTACTAATTTTAAAACACCATTTAAGGAAAAAATTATTTATTTGTAATTTAAATGTCAATGATGATTAAATTTAAATATTTTGTTATTAATTTTATAAGAATATAAAATTCATTTTTAAATAATCATATTTTATCGACTTTAGCAATTTTTGACTCATTTTAATTTTATTCTGTGTTGTTTTATATTTTAAAATTTATAGTAAGGTTTAAAACTAGATGTTAATGAAATTGTGATTAAAAAATAGAGAAAAATATGAATTTGAATTTTGATTATATTAAAGTGGACCCACAATACTATTTATCTTCGGAGTGTGTTTGATTTTTTTTTTTGCTGATAAATTACTAGAAATAAAAAAAACTTATTAAGGGAGGAAATTGTAGATTTTAACATAAGAGGGGTGGGAAATGTAATTCTAGCTTTTTTTAGGGGTGGGGAGTGAAATATTTTCTAATATGTTTTGCATAAGAGGGCAGGGGAGTGTATATTTTAACATAAGAGGGGAGGGGAGTCTATGTTATATCCTAGATTTGATTTTGAATAAATTTCACTTACGAATTCTTTGTCTTGCATCAAAAGATCTTTAACATTGACCTCTGCAGAGTAGATGCACAGAAGTTAGAAGAGTGGGCTCGTGCTCAAAATGCAACTTCCCTGATTGAGTTTTCATCTAGAGAAGGAGAAGTTGAGGGGACTTTAAAGGATATTGCAGAAAGAGCGGGTGGAAATGGGGATTTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGTCTTCTTGAGTTAGCAAATGCAATGGAACCAACAATTTTGGAAAAGGTTACCCAATTCATTTAAATTGTCATGATATATTGATCCCAACTTAGTCCTATACTTGTTTTATTATATATTTCGTTTTTACAATTCGAAGTTTAATCTATCAAGTCAAGTTGTGTTCACCAGTTCTAGAAAACTAATCAGTCATGAAACTATTGCCAACTTATTTCATTAGCTGAAGTGATCAAATTGCTTTGATATCTTGATCTCTCTTTTCCATGTTCAGGCTTCATTAGAGGGGTTGCTCCCATAATTTCCTTTATTTATATTGAAAATTGATTTCACTATTTTACTTCTTCTGAAACTATTGAATTACTCAGTAACTTTGAAGGAGAATGCTGCATTCATCGGTAATAAACATTTAGGACGCACACAAATTGCTGGTAAAGGTTAAAACTACTAATATTGAGTATACAGATGATATGACTATCATCAGTCTGTGGCGTTGCATAAGATTCTCTGAATGTCAAGATTGTGAAAGTGTCTATTCTACCACTAATAATTTTTGTGTATGGCTGGGATTATTTATCAATTAACATCTGTGTCAATTCAACAGCTTTGTTCAGCTTTGAATATCAACAAAAAAAGTGTTGATCGAGATTTGGACGTGTATCGCAATCTGCTTTCTAAGTTGGTACAAGCTAAAGAGCTGCTAAAGGAATACATTGACAGGTAAGCATAAACCTTGCAATGCTATTAAGTTGTTCTCACTTCTTTTGGGTTTTCACCTATGATATAATATTTGAATGTAAAATTTGTTGAATTTATTTTTTTCATATGCTACATTTAGTCTTCAGTGTCAAATCTACAAAGTCATTATCCCTTGAAGTTCAAGACTGAATCTATATTCTAATCGTCCTTTTCATAAAATTAAGATCACAAACTTTCAAGTAACATACTAGTAAGAATGTTTGATTTGACTTTTAATTGAAAATTAAGCTGGTTACCTATTTACTAAGTTTTTCAGTTCAGGGTTTAGGAAAAGCATTATTTTCGAAATAACCTTTTTCAGAAAATACAATAGTAGAAACGCGCTAGTGATATACTGAGCACTTGGCAGGTTATAGTCAGGTTATTTTAACTGCTTCAAAGTCATTTGATTCCTTAACCTAAATTTTCGACATGTTATGATTATAACTTGCTTGGTTTTTGCGGCTGGATTTTGATTCTTTGGAATGATCGCTTACTTCAGGGAGAAGAAGAAAATAGAAGAAAGGGCTGAACCACAAAAGGCTAATGAGGCCATTTCAAAATGTTTGGGACAAGAGCAGTTTTCTAACATGATCACCAAATAA

Protein sequence

>MS.gene064203.t1

MAAVTSSFSFSTLTQSSQRKLTTLSSTRFFGSDSDAVRFRLSISLRYVGVRTSNSVSKLVVRCSSSVSDPPTVSETKLNFLKAYKRPIPSIYNSVLQELIVQQHLMRYKKSYRYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPAQYRVDAQKLEEWARAQNATSLIEFSSREGEVEGTLKDIAERAGGNGDFSYSRFFAVGLFRLLELANAMEPTILEKLCSALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYIDREKKKIEERAEPQKANEAISKCLGQEQFSNMITK