AlfalfaGEDB | MS.gene028992

M. sativa cultivar XinJiangDaYe / MS.gene028992

KEGG: -
GO: GO:0008150 GO:0008152 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0022607 GO:0034622 GO:0043933 GO:0044237 GO:0065003 GO:0071840
PFAM: PF11264.11

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028992.t1	XP_013465003.1	97.9	288	5	1	16	303	1	287	3.20E-147	531.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028992.t1	Q7XAB8	68.6	283	83	3	16	297	1	278	1.4e-98	360.9

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028992.t1	I3SMR8	97.9	288	5	1	16	303	1	287	2.3e-147	531.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type
MS.gene028992	MS.gene45498	PPI
MS.gene028992	MS.gene34133	PPI
MS.gene028992	MS.gene052115	PPI
MS.gene028992	MS.gene007198	PPI
MS.gene028992	MS.gene006258	PPI
MS.gene028992	MS.gene49126	PPI
MS.gene028992	MS.gene30964	PPI
MS.gene028992	MS.gene31148	PPI
MS.gene028992	MS.gene24730	PPI
MS.gene028992	MS.gene050301	PPI
MS.gene028992	MS.gene30963	PPI
MS.gene028992	MS.gene061150	PPI
MS.gene028992	MS.gene24695	PPI
MS.gene028992	MS.gene052116	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028992.t1	MTR_2g089795	97.917	288	5	1	16	303	1	287	0.0	579
MS.gene028992.t1	MTR_4g045980	75.610	287	67	3	16	299	1	287	4.61e-154	433

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene028992.t1	AT2G20890	66.667	285	87	4	14	297	1	278	7.74e-132	377

Find 59 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TGGCAATTCTGCTTCTAAAA+TGG	0.248095	2.3:+11267402	MS.gene028992:CDS
CCAACTCAAGAAGGCGAAAA+AGG	0.290072	2.3:-11269103	None:intergenic
GTACTTTCAGTTTCTAGTTA+TGG	0.302790	2.3:+11267234	MS.gene028992:intron
TTACAATGTCGACAACAAAA+AGG	0.323513	2.3:+11267026	MS.gene028992:CDS
CCCTTCAACTTCTCCTTCTC+TGG	0.328222	2.3:-11269009	None:intergenic
GTTCTGATATGTTTGGAATT+CGG	0.343615	2.3:+11267344	MS.gene028992:CDS
TCATGAAACCTGTATTGTTC+TGG	0.346032	2.3:-11268478	None:intergenic
GAGCCACAGAAGGCTAATAA+TGG	0.365144	2.3:+11270013	MS.gene028992:CDS
TATGATTCTGTATTTGCTCT+TGG	0.366606	2.3:+11268358	MS.gene028992:CDS
GCTTCAAGTTCTGATATGTT+TGG	0.372546	2.3:+11267337	MS.gene028992:CDS
GCTACCTTGTCTAAAATTGT+TGG	0.381994	2.3:-11269140	None:intergenic
TGCAAAGAAGTTGGAAGATT+GGG	0.391763	2.3:+11268947	MS.gene028992:CDS
TTGGTCGTTTATATGCCTTT+AGG	0.392956	2.3:-11268258	None:intergenic
AGCCACAGAAGGCTAATAAT+GGG	0.402301	2.3:+11270014	MS.gene028992:CDS
CTCTTTAGCTTGAACCAGCT+TGG	0.406680	2.3:-11269477	None:intergenic
AGCATATATTAATGCATTGA+AGG	0.411154	2.3:+11268450	MS.gene028992:CDS
CAATGCATGTCTTCTGTCAC+AGG	0.424463	2.3:+11267430	MS.gene028992:CDS
AGGAAGATCCAGAACAATAC+AGG	0.432189	2.3:+11268470	MS.gene028992:CDS
GAGCAAATACAGAATCATAT+TGG	0.436295	2.3:-11268354	None:intergenic
GAAGAAGAAAAGAGAAGAAA+GGG	0.437273	2.3:+11269988	MS.gene028992:CDS
ATGCAAAGAAGTTGGAAGAT+TGG	0.439138	2.3:+11268946	MS.gene028992:CDS
CGACAAAAGAAGCGTTGATC+GGG	0.440456	2.3:+11269427	MS.gene028992:CDS
AGAAGAAGAAAAGAGAAGAA+AGG	0.444095	2.3:+11269987	MS.gene028992:CDS
TCGTATGCTGCTTTCCAAGC+TGG	0.444672	2.3:+11269463	MS.gene028992:CDS
CAGAGTAGATGCAAAGAAGT+TGG	0.448896	2.3:+11268938	MS.gene028992:intron
AAGAAGCGTTGATCGGGACT+TGG	0.466265	2.3:+11269433	MS.gene028992:CDS
TTTCCCCGCTCAATTTGTAA+TGG	0.470303	2.3:-11270038	None:intergenic
TTGTTATAGATACTAGGAAT+TGG	0.474724	2.3:-11268277	None:intergenic
AACACCAACACAATGGTAAG+AGG	0.483239	2.3:-11267374	None:intergenic
TATCTATAACAATGTGCTGC+AGG	0.485681	2.3:+11268288	MS.gene028992:CDS
GGCTCAAAACTCAACTTCAC+TGG	0.505541	2.3:+11268974	MS.gene028992:CDS
ATTAATATATGCTTTGAAGA+TGG	0.505650	2.3:-11268440	None:intergenic
TAGGAAATTTAGCTTTGTCT+CGG	0.507415	2.3:-11268239	None:intergenic
TAGCTTTGTCTCGGAAACGC+TGG	0.510906	2.3:-11268230	None:intergenic
CACTGTCTATGATAAACTCA+TGG	0.515316	2.3:+11268387	MS.gene028992:CDS
TCGACAAAAGAAGCGTTGAT+CGG	0.519628	2.3:+11269426	MS.gene028992:CDS
AGCTTTGTCTCGGAAACGCT+GGG	0.521270	2.3:-11268229	None:intergenic
TTGCATTTGCCAACTCAAGA+AGG	0.522030	2.3:-11269112	None:intergenic
GATTCCTCTTACCATTGTGT+TGG	0.524222	2.3:+11267370	MS.gene028992:CDS
GACAAAGCTAAATTTCCTAA+AGG	0.527158	2.3:+11268243	MS.gene028992:CDS
TGCAAAGGGAATTTATTGAC+AGG	0.527306	2.3:+11269501	MS.gene028992:CDS
CATTGTGTTGGTGTTAGAGT+TGG	0.534920	2.3:+11267382	MS.gene028992:CDS
TCCAGAGAAGGAGAAGTTGA+AGG	0.535017	2.3:+11269008	MS.gene028992:CDS
GTCTATGATAAACTCATGGA+AGG	0.537912	2.3:+11268391	MS.gene028992:CDS
TTCAAGCTAAAGAGCTGCAA+AGG	0.544489	2.3:+11269486	MS.gene028992:CDS
GCCCCATTATTAGCCTTCTG+TGG	0.553177	2.3:-11270016	None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG	0.554923	2.3:+11269009	MS.gene028992:CDS
TATAGTCGTTTCTTTGCAGT+AGG	0.573306	2.3:+11269080	MS.gene028992:CDS
TCAAGCTAAAGAGCTGCAAA+GGG	0.583103	2.3:+11269487	MS.gene028992:CDS
AGAAAGGGTTGAGCCACAGA+AGG	0.594705	2.3:+11270003	MS.gene028992:CDS
GAAGTTGGAAGATTGGGCTA+AGG	0.605561	2.3:+11268953	MS.gene028992:CDS
AGCACATTGTTATAGATACT+AGG	0.605595	2.3:-11268283	None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG	0.608753	2.3:+11269010	MS.gene028992:CDS
GGAAGGGTATTCTAGTGAAG+AGG	0.630073	2.3:+11268408	MS.gene028992:CDS
ACATATCAGAACTTGAAGCA+AGG	0.636756	2.3:-11267333	None:intergenic
GTCAACATAACAGCTTTGTG+CGG	0.651736	2.3:+11269394	MS.gene028992:intron
CAACTCTAACACCAACACAA+TGG	0.653271	2.3:-11267381	None:intergenic
TCTATGATAAACTCATGGAA+GGG	0.662278	2.3:+11268392	MS.gene028992:CDS
GCCACAGAAGGCTAATAATG+GGG	0.679103	2.3:+11270015	MS.gene028992:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	ATAGTAATAATAATTAATGA+CGG	+	chr2.3:11268590-11268609	MS.gene028992:intron	10.0%
!!	AAAGTATAACGATGAAAAAA+AGG	-	chr2.3:11267099-11267118	None:intergenic	20.0%
!!	AATAAAGAACAATAAAGCAA+AGG	-	chr2.3:11268516-11268535	None:intergenic	20.0%
!!	GATTTATGATAGTTAATCTT+TGG	+	chr2.3:11269370-11269389	MS.gene028992:intron	20.0%
!!!	ATATGTTTTGGTTATTTTAG+TGG	+	chr2.3:11267663-11267682	MS.gene028992:intron	20.0%
!!!	ATTAATATATGCTTTGAAGA+TGG	-	chr2.3:11268443-11268462	None:intergenic	20.0%
!!!	TTTTTCAATTATTGAGTCAA+AGG	-	chr2.3:11268564-11268583	None:intergenic	20.0%
!	AATAGCATACTCAGATTTAT+AGG	-	chr2.3:11269814-11269833	None:intergenic	25.0%
!	AGCATATATTAATGCATTGA+AGG	+	chr2.3:11268450-11268469	MS.gene028992:CDS	25.0%
!	AGTCTAATTCACAAATTCAA+GGG	-	chr2.3:11269749-11269768	None:intergenic	25.0%
!	ATAGCATACTCAGATTTATA+GGG	-	chr2.3:11269813-11269832	None:intergenic	25.0%
!	ATCTCAGTTCAACAAAAATA+AGG	-	chr2.3:11267907-11267926	None:intergenic	25.0%
!	TAGTCTAATTCACAAATTCA+AGG	-	chr2.3:11269750-11269769	None:intergenic	25.0%
!	TCTCAGTTCAACAAAAATAA+GGG	-	chr2.3:11267906-11267925	None:intergenic	25.0%
!	TTGACAAAAACATGGAAAAA+CGG	+	chr2.3:11267844-11267863	MS.gene028992:intron	25.0%
!	TTGTTATAGATACTAGGAAT+TGG	-	chr2.3:11268280-11268299	None:intergenic	25.0%
!!	CAATAGTTTTCTATTCTTTC+CGG	-	chr2.3:11268821-11268840	None:intergenic	25.0%
!!	TATGATGCTAACTTAGATTT+TGG	-	chr2.3:11268788-11268807	None:intergenic	25.0%
!!!	ATATGTTTTTTTTTACCCCA+GGG	+	chr2.3:11269964-11269983	MS.gene028992:intron	25.0%
!!!	ATTAGACTTTAACTTGTGAA+AGG	-	chr2.3:11269832-11269851	None:intergenic	25.0%
!!!	TAAGTGTGTGTTTGATTTTA+CGG	+	chr2.3:11269633-11269652	MS.gene028992:intron	25.0%
!!!	TATATGTTTTTTTTTACCCC+AGG	+	chr2.3:11269963-11269982	MS.gene028992:intron	25.0%
	AAAACTCTAATGGCAATAGA+CGG	+	chr2.3:11267749-11267768	MS.gene028992:intron	30.0%
	AACCAAAACATATGCCAAAA+AGG	-	chr2.3:11267656-11267675	None:intergenic	30.0%
	AAGTCACTATCTTAGTTGTA+AGG	-	chr2.3:11267811-11267830	None:intergenic	30.0%
	ACTCAGATTTATAGAGTAGA+TGG	-	chr2.3:11269857-11269876	None:intergenic	30.0%
	AGAAAATATCCTTCATGGAA+AGG	-	chr2.3:11267178-11267197	None:intergenic	30.0%
	AGAAGAAGAAAAGAGAAGAA+AGG	+	chr2.3:11269987-11270006	MS.gene028992:CDS	30.0%
	AGCACATTGTTATAGATACT+AGG	-	chr2.3:11268286-11268305	None:intergenic	30.0%
	ATCACTTCAAACTGCTTTAT+TGG	-	chr2.3:11269253-11269272	None:intergenic	30.0%
	ATCGTTGGAAATTTCAATGA+TGG	-	chr2.3:11267995-11268014	None:intergenic	30.0%
	ATGACCAACTAACGATAATA+AGG	-	chr2.3:11268185-11268204	None:intergenic	30.0%
	CTATTGTTGATCACATTGAT+AGG	+	chr2.3:11267692-11267711	MS.gene028992:intron	30.0%
	GAAGAAGAAAAGAGAAGAAA+GGG	+	chr2.3:11269988-11270007	MS.gene028992:CDS	30.0%
	GACAAAGCTAAATTTCCTAA+AGG	+	chr2.3:11268243-11268262	MS.gene028992:CDS	30.0%
	GAGCAAATACAGAATCATAT+TGG	-	chr2.3:11268357-11268376	None:intergenic	30.0%
	GATTTACAATTACAGCTTGA+TGG	+	chr2.3:11269913-11269932	MS.gene028992:intron	30.0%
	TAAACTGCTCAAAACTCTAA+TGG	+	chr2.3:11267739-11267758	MS.gene028992:intron	30.0%
	TATGATTCTGTATTTGCTCT+TGG	+	chr2.3:11268358-11268377	MS.gene028992:CDS	30.0%
	TATTATCGTTAGTTGGTCAT+GGG	+	chr2.3:11268185-11268204	MS.gene028992:intron	30.0%
	TCTATGATAAACTCATGGAA+GGG	+	chr2.3:11268392-11268411	MS.gene028992:CDS	30.0%
	TGAACCTTATTATCGTTAGT+TGG	+	chr2.3:11268178-11268197	MS.gene028992:intron	30.0%
	TGCTTTCAAAACATTTGTGT+TGG	-	chr2.3:11267126-11267145	None:intergenic	30.0%
	TTACAATGTCGACAACAAAA+AGG	+	chr2.3:11267026-11267045	MS.gene028992:CDS	30.0%
	TTATTATCGTTAGTTGGTCA+TGG	+	chr2.3:11268184-11268203	MS.gene028992:intron	30.0%
	TTTAACACCTACTGCAAAAA+AGG	+	chr2.3:11268129-11268148	MS.gene028992:intron	30.0%
	TTTGAGCAGTTTATAAAGAC+TGG	-	chr2.3:11267732-11267751	None:intergenic	30.0%
!	AGAACCAACAATTTTAGACA+AGG	+	chr2.3:11269136-11269155	MS.gene028992:CDS	30.0%
!	AGCAGTTTGAAGTGATTAAA+TGG	+	chr2.3:11269257-11269276	MS.gene028992:intron	30.0%
!	CATATGTTTTGCAAACTCTA+TGG	-	chr2.3:11268062-11268081	None:intergenic	30.0%
!	GGTTTGTGCTTTTGTTAATT+TGG	+	chr2.3:11267451-11267470	MS.gene028992:intron	30.0%
!	GTTCTGATATGTTTGGAATT+CGG	+	chr2.3:11267344-11267363	MS.gene028992:CDS	30.0%
!	TTTTGCTTAGTACTATCTGA+AGG	+	chr2.3:11268859-11268878	MS.gene028992:intron	30.0%
!!	ATCCTTTTTGGCATATGTTT+TGG	+	chr2.3:11267651-11267670	MS.gene028992:intron	30.0%
!!	GTACTTTCAGTTTCTAGTTA+TGG	+	chr2.3:11267234-11267253	MS.gene028992:intron	30.0%
!!	TAGGAAATTTAGCTTTGTCT+CGG	-	chr2.3:11268242-11268261	None:intergenic	30.0%
!!	TTTTTGTTGTCGACATTGTA+AGG	-	chr2.3:11267027-11267046	None:intergenic	30.0%
!!!	CCAAACCAAGTTTTAGATAA+GGG	+	chr2.3:11267476-11267495	MS.gene028992:intron	30.0%
!!!	TCCAAACCAAGTTTTAGATA+AGG	+	chr2.3:11267475-11267494	MS.gene028992:intron	30.0%
	AAAGGATCCCCAAAAGATTA+CGG	-	chr2.3:11267638-11267657	None:intergenic	35.0%
	AAGGATATTGCAAAAAGAGC+AGG	+	chr2.3:11269038-11269057	MS.gene028992:CDS	35.0%
	AATATCCTTCATGGAAAGGA+AGG	-	chr2.3:11267174-11267193	None:intergenic	35.0%
	ACATATCAGAACTTGAAGCA+AGG	-	chr2.3:11267336-11267355	None:intergenic	35.0%
	ACTCAGATTTATAGGGTAGA+TGG	-	chr2.3:11269806-11269825	None:intergenic	35.0%
	AGCATCATATTATTCCCAAC+CGG	+	chr2.3:11268799-11268818	MS.gene028992:intron	35.0%
	AGTTAGTTGCATGCATGATT+AGG	+	chr2.3:11267587-11267606	MS.gene028992:intron	35.0%
	ATGCAAAGAAGTTGGAAGAT+TGG	+	chr2.3:11268946-11268965	MS.gene028992:CDS	35.0%
	ATGTCGACAACAAAAAGGTT+TGG	+	chr2.3:11267031-11267050	MS.gene028992:intron	35.0%
	CACTGTCTATGATAAACTCA+TGG	+	chr2.3:11268387-11268406	MS.gene028992:CDS	35.0%
	CATGATGCCTTGAATGAATT+GGG	-	chr2.3:11269165-11269184	None:intergenic	35.0%
	GAAACGAGTAGAAGAAAAAG+TGG	-	chr2.3:11267314-11267333	None:intergenic	35.0%
	GACTCAGAAAATATCCTTCA+TGG	-	chr2.3:11267183-11267202	None:intergenic	35.0%
	GTCTATGATAAACTCATGGA+AGG	+	chr2.3:11268391-11268410	MS.gene028992:CDS	35.0%
	TATAGTCGTTTCTTTGCAGT+AGG	+	chr2.3:11269080-11269099	MS.gene028992:CDS	35.0%
	TATCTATAACAATGTGCTGC+AGG	+	chr2.3:11268288-11268307	MS.gene028992:CDS	35.0%
	TCATGAAACCTGTATTGTTC+TGG	-	chr2.3:11268481-11268500	None:intergenic	35.0%
	TCTTAGTTGTAAGGACAAGA+AGG	-	chr2.3:11267802-11267821	None:intergenic	35.0%
	TGCAAAGAAGTTGGAAGATT+GGG	+	chr2.3:11268947-11268966	MS.gene028992:CDS	35.0%
	TGCAAAGGGAATTTATTGAC+AGG	+	chr2.3:11269501-11269520	MS.gene028992:CDS	35.0%
	TGTCGACAACAAAAAGGTTT+GGG	+	chr2.3:11267032-11267051	MS.gene028992:intron	35.0%
	TTGGTCGTTTATATGCCTTT+AGG	-	chr2.3:11268261-11268280	None:intergenic	35.0%
	TTGTAGGAGGAAAACATATC+AGG	-	chr2.3:11269289-11269308	None:intergenic	35.0%
	TTGTTGATCACATTGATAGG+TGG	+	chr2.3:11267695-11267714	MS.gene028992:intron	35.0%
!	AGTTTTCTATTCTTTCCGGT+TGG	-	chr2.3:11268817-11268836	None:intergenic	35.0%
!	ATGTTTTGCAAACTCTATGG+TGG	-	chr2.3:11268059-11268078	None:intergenic	35.0%
!	CCCTTATCTAAAACTTGGTT+TGG	-	chr2.3:11267479-11267498	None:intergenic	35.0%
!	CTTATGCACCGTAATCTTTT+GGG	+	chr2.3:11267627-11267646	MS.gene028992:intron	35.0%
!	GCTACCTTGTCTAAAATTGT+TGG	-	chr2.3:11269143-11269162	None:intergenic	35.0%
!	GCTTCAAGTTCTGATATGTT+TGG	+	chr2.3:11267337-11267356	MS.gene028992:CDS	35.0%
!	GCTTTATTGGAACTTCTTAG+AGG	-	chr2.3:11269240-11269259	None:intergenic	35.0%
!	GTTTTCTATTCTTTCCGGTT+GGG	-	chr2.3:11268816-11268835	None:intergenic	35.0%
!	TCTTATGCACCGTAATCTTT+TGG	+	chr2.3:11267626-11267645	MS.gene028992:intron	35.0%
!	TGGCAATTCTGCTTCTAAAA+TGG	+	chr2.3:11267402-11267421	MS.gene028992:CDS	35.0%
!	TTATGCACCGTAATCTTTTG+GGG	+	chr2.3:11267628-11267647	MS.gene028992:intron	35.0%
!!	AATCTTTTGGGGATCCTTTT+TGG	+	chr2.3:11267639-11267658	MS.gene028992:intron	35.0%
!!	AGAAGTTGAAGGGGTTTTAA+AGG	+	chr2.3:11269019-11269038	MS.gene028992:CDS	35.0%
!!	AGATTTTGGCAAACAAACTC+TGG	-	chr2.3:11268774-11268793	None:intergenic	35.0%
!!!	AACCAAGTTTTAGATAAGGG+AGG	+	chr2.3:11267479-11267498	MS.gene028992:intron	35.0%
!!!	AACTCTATGGTGGACTATTT+TGG	-	chr2.3:11268049-11268068	None:intergenic	35.0%
!!!	TAGTCTTCCTTTTTTGCAGT+AGG	-	chr2.3:11268139-11268158	None:intergenic	35.0%
	AACACCAACACAATGGTAAG+AGG	-	chr2.3:11267377-11267396	None:intergenic	40.0%
	AAGGTAGCCCAATTCATTCA+AGG	+	chr2.3:11269155-11269174	MS.gene028992:intron	40.0%
	AAGTCATTGTCTGAGTGACA+AGG	+	chr2.3:11267932-11267951	MS.gene028992:intron	40.0%
	AGCCACAGAAGGCTAATAAT+GGG	+	chr2.3:11270014-11270033	MS.gene028992:CDS	40.0%
	AGGAAGATCCAGAACAATAC+AGG	+	chr2.3:11268470-11268489	MS.gene028992:CDS	40.0%
	ATATGCATGAGTGTACGAGA+TGG	+	chr2.3:11268077-11268096	MS.gene028992:intron	40.0%
	CAACTCTAACACCAACACAA+TGG	-	chr2.3:11267384-11267403	None:intergenic	40.0%
	CAGAGTAGATGCAAAGAAGT+TGG	+	chr2.3:11268938-11268957	MS.gene028992:intron	40.0%
	CATTGATAGGTGGTTCAAGA+TGG	+	chr2.3:11267705-11267724	MS.gene028992:intron	40.0%
	CTTTGCATCTACTCTGTAGA+GGG	-	chr2.3:11268934-11268953	None:intergenic	40.0%
	GACTGGTACTTGAAAATCGT+TGG	-	chr2.3:11268010-11268029	None:intergenic	40.0%
	GATAGTGACTTGATCAGTGT+CGG	+	chr2.3:11267820-11267839	MS.gene028992:intron	40.0%
	GATTCCTCTTACCATTGTGT+TGG	+	chr2.3:11267370-11267389	MS.gene028992:CDS	40.0%
	GCAAAAAGAGCAGGAGAAAA+GGG	+	chr2.3:11269047-11269066	MS.gene028992:CDS	40.0%
	GCATCGTTATGAATGTTCGT+AGG	+	chr2.3:11269348-11269367	MS.gene028992:intron	40.0%
	GCATGATGCCTTGAATGAAT+TGG	-	chr2.3:11269166-11269185	None:intergenic	40.0%
	GGAAGGACAAATTTCAGAGA+TGG	-	chr2.3:11267157-11267176	None:intergenic	40.0%
	TCAAGCTAAAGAGCTGCAAA+GGG	+	chr2.3:11269487-11269506	MS.gene028992:CDS	40.0%
	TCTTTGCATCTACTCTGTAG+AGG	-	chr2.3:11268935-11268954	None:intergenic	40.0%
	TGCAAAAAGAGCAGGAGAAA+AGG	+	chr2.3:11269046-11269065	MS.gene028992:CDS	40.0%
	TTCAAGCTAAAGAGCTGCAA+AGG	+	chr2.3:11269486-11269505	MS.gene028992:CDS	40.0%
	TTGCATTTGCCAACTCAAGA+AGG	-	chr2.3:11269115-11269134	None:intergenic	40.0%
	TTGCTACTGAGAGCAATTGT+AGG	-	chr2.3:11269305-11269324	None:intergenic	40.0%
	TTTGTCCTTCCTTTCCATGA+AGG	+	chr2.3:11267166-11267185	MS.gene028992:intron	40.0%
!	CACCTCCCTTATCTAAAACT+TGG	-	chr2.3:11267484-11267503	None:intergenic	40.0%
!	GTCAACATAACAGCTTTGTG+CGG	+	chr2.3:11269394-11269413	MS.gene028992:intron	40.0%
!	GTTGAGTTTTCATCCAGAGA+AGG	+	chr2.3:11268996-11269015	MS.gene028992:CDS	40.0%
!	TCTCTTTTCTTCTTCTCCCT+GGG	-	chr2.3:11269983-11270002	None:intergenic	40.0%
!	TTCATTCAAGGCATCATGCA+TGG	+	chr2.3:11269167-11269186	MS.gene028992:intron	40.0%
!	TTCTCTTTTCTTCTTCTCCC+TGG	-	chr2.3:11269984-11270003	None:intergenic	40.0%
!!	CATTGTGTTGGTGTTAGAGT+TGG	+	chr2.3:11267382-11267401	MS.gene028992:CDS	40.0%
!!	GTGTCGGTTTGACAAAAACA+TGG	+	chr2.3:11267836-11267855	MS.gene028992:intron	40.0%
!!	TCGACAAAAGAAGCGTTGAT+CGG	+	chr2.3:11269426-11269445	MS.gene028992:CDS	40.0%
!!!	CTATGGTGGACTATTTTGGT+AGG	-	chr2.3:11268045-11268064	None:intergenic	40.0%
	AACAAACTCTGGATTGTGCG+CGG	-	chr2.3:11268763-11268782	None:intergenic	45.0%
	ACAGAGAGGAGAACAACTGA+AGG	-	chr2.3:11269549-11269568	None:intergenic	45.0%
	ACTATGTCCAGCAGAGGTTT+GGG	+	chr2.3:11268633-11268652	MS.gene028992:intron	45.0%
	CAATGCATGTCTTCTGTCAC+AGG	+	chr2.3:11267430-11267449	MS.gene028992:CDS	45.0%
	CACACTGTGAAGTCGAAAAG+AGG	-	chr2.3:11267061-11267080	None:intergenic	45.0%
	CAGAGAAGGAGAAGTTGAAG+GGG	+	chr2.3:11269010-11269029	MS.gene028992:CDS	45.0%
	CAGAGAGGAGAACAACTGAA+GGG	-	chr2.3:11269548-11269567	None:intergenic	45.0%
	CCAACTCAAGAAGGCGAAAA+AGG	-	chr2.3:11269106-11269125	None:intergenic	45.0%
	CCAGAGAAGGAGAAGTTGAA+GGG	+	chr2.3:11269009-11269028	MS.gene028992:CDS	45.0%
	CTACTGAGAGCAATTGTAGG+AGG	-	chr2.3:11269302-11269321	None:intergenic	45.0%
	GAAAAGCCATGATGACAGAG+AGG	-	chr2.3:11269563-11269582	None:intergenic	45.0%
	GAAGTTGGAAGATTGGGCTA+AGG	+	chr2.3:11268953-11268972	MS.gene028992:CDS	45.0%
	GAGCCACAGAAGGCTAATAA+TGG	+	chr2.3:11270013-11270032	MS.gene028992:CDS	45.0%
	GCCACAGAAGGCTAATAATG+GGG	+	chr2.3:11270015-11270034	MS.gene028992:CDS	45.0%
	GGCTCAAAACTCAACTTCAC+TGG	+	chr2.3:11268974-11268993	MS.gene028992:CDS	45.0%
	GGCTGATTGCATGGAATCAA+GGG	-	chr2.3:11268675-11268694	None:intergenic	45.0%
	GTTGTAAGGACAAGAAGGAC+CGG	-	chr2.3:11267797-11267816	None:intergenic	45.0%
	TCATTGTCTGAGTGACAAGG+TGG	+	chr2.3:11267935-11267954	MS.gene028992:intron	45.0%
	TCCAGAGAAGGAGAAGTTGA+AGG	+	chr2.3:11269008-11269027	MS.gene028992:CDS	45.0%
	TGGCTGATTGCATGGAATCA+AGG	-	chr2.3:11268676-11268695	None:intergenic	45.0%
	TGTTCTCCTCTCTGTCATCA+TGG	+	chr2.3:11269554-11269573	MS.gene028992:intron	45.0%
	TTGATCAGATGGCCTAGAAG+TGG	-	chr2.3:11268696-11268715	None:intergenic	45.0%
	TTGTAAGGACAAGAAGGACC+GGG	-	chr2.3:11267796-11267815	None:intergenic	45.0%
	TTGTTGCGGTCTTGATCAGA+TGG	-	chr2.3:11268707-11268726	None:intergenic	45.0%
!	CTCTTTTCGACTTCACAGTG+TGG	+	chr2.3:11267059-11267078	MS.gene028992:intron	45.0%
!	CTCTTTTCTTCTTCTCCCTG+GGG	-	chr2.3:11269982-11270001	None:intergenic	45.0%
!	TTTTGGTAGGTGGTCTACAG+TGG	-	chr2.3:11268032-11268051	None:intergenic	45.0%
!!	CCTTTTTCGCCTTCTTGAGT+TGG	+	chr2.3:11269103-11269122	MS.gene028992:CDS	45.0%
!!	CGACAAAAGAAGCGTTGATC+GGG	+	chr2.3:11269427-11269446	MS.gene028992:CDS	45.0%
!!	CTCTTTAGCTTGAACCAGCT+TGG	-	chr2.3:11269480-11269499	None:intergenic	45.0%
!!	GGAAGGGTATTCTAGTGAAG+AGG	+	chr2.3:11268408-11268427	MS.gene028992:CDS	45.0%
!!!	TGGTGGACTATTTTGGTAGG+TGG	-	chr2.3:11268042-11268061	None:intergenic	45.0%
	AGAAAGGGTTGAGCCACAGA+AGG	+	chr2.3:11270003-11270022	MS.gene028992:CDS	50.0%
	ATGCAGCAGTCAACCACATC+AGG	-	chr2.3:11268731-11268750	None:intergenic	50.0%
	CAACCACATCAGGGTTGTTG+CGG	-	chr2.3:11268721-11268740	None:intergenic	50.0%
	CCATGCAATCAGCCACTTCT+AGG	+	chr2.3:11268681-11268700	MS.gene028992:intron	50.0%
	CCCTTCAACTTCTCCTTCTC+TGG	-	chr2.3:11269012-11269031	None:intergenic	50.0%
	CCTAGAAGTGGCTGATTGCA+TGG	-	chr2.3:11268684-11268703	None:intergenic	50.0%
	CTGAAGACTATGTCCAGCAG+AGG	+	chr2.3:11268627-11268646	MS.gene028992:intron	50.0%
	CTGCTGGACATAGTCTTCAG+TGG	-	chr2.3:11268627-11268646	None:intergenic	50.0%
	GACTATGTCCAGCAGAGGTT+TGG	+	chr2.3:11268632-11268651	MS.gene028992:intron	50.0%
	GCATGAGTGTACGAGATGGT+GGG	+	chr2.3:11268081-11268100	MS.gene028992:intron	50.0%
	TGCAGCAGTCAACCACATCA+GGG	-	chr2.3:11268730-11268749	None:intergenic	50.0%
	TGCATGAGTGTACGAGATGG+TGG	+	chr2.3:11268080-11268099	MS.gene028992:intron	50.0%
!	AGCTTTGTCTCGGAAACGCT+GGG	-	chr2.3:11268232-11268251	None:intergenic	50.0%
!!	AAGAAGCGTTGATCGGGACT+TGG	+	chr2.3:11269433-11269452	MS.gene028992:CDS	50.0%
!!	GCCCCATTATTAGCCTTCTG+TGG	-	chr2.3:11270019-11270038	None:intergenic	50.0%
!!	TAGCTTTGTCTCGGAAACGC+TGG	-	chr2.3:11268233-11268252	None:intergenic	50.0%
!!	TCGTATGCTGCTTTCCAAGC+TGG	+	chr2.3:11269463-11269482	MS.gene028992:CDS	50.0%
	ACCGGGAGCTTCTACTTCAG+AGG	-	chr2.3:11267779-11267798	None:intergenic	55.0%
	AGACCGCAACAACCCTGATG+TGG	+	chr2.3:11268715-11268734	MS.gene028992:intron	55.0%
	CACACAACCCAAACCTCTGC+TGG	-	chr2.3:11268643-11268662	None:intergenic	55.0%
	CCGGGAGCTTCTACTTCAGA+GGG	-	chr2.3:11267778-11267797	None:intergenic	55.0%
	GTAGGTGGTCTACAGTGGAC+TGG	-	chr2.3:11268027-11268046	None:intergenic	55.0%
!!	CCCTCTGAAGTAGAAGCTCC+CGG	+	chr2.3:11267775-11267794	MS.gene028992:intron	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	11267012	11270051	11267012	ID=MS.gene028992
chr2.3	mRNA	11267012	11270051	11267012	ID=MS.gene028992.t1;Parent=MS.gene028992
chr2.3	exon	11267012	11267047	11267012	ID=MS.gene028992.t1.exon1;Parent=MS.gene028992.t1
chr2.3	CDS	11267012	11267047	11267012	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1
chr2.3	exon	11267244	11267451	11267244	ID=MS.gene028992.t1.exon2;Parent=MS.gene028992.t1
chr2.3	CDS	11267244	11267451	11267244	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1
chr2.3	exon	11268224	11268491	11268224	ID=MS.gene028992.t1.exon3;Parent=MS.gene028992.t1
chr2.3	CDS	11268224	11268491	11268224	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1
chr2.3	exon	11268941	11269157	11268941	ID=MS.gene028992.t1.exon4;Parent=MS.gene028992.t1
chr2.3	CDS	11268941	11269157	11268941	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1
chr2.3	exon	11269407	11269522	11269407	ID=MS.gene028992.t1.exon5;Parent=MS.gene028992.t1
chr2.3	CDS	11269407	11269522	11269407	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1
chr2.3	exon	11269985	11270051	11269985	ID=MS.gene028992.t1.exon6;Parent=MS.gene028992.t1
chr2.3	CDS	11269985	11270051	11269985	ID=cds.MS.gene028992.t1;Parent=MS.gene028992.t1

Gene Sequence

>MS.gene028992

ATGTCAGCGACTCCTTACAATGTCGACAACAAAAAGGTTTGGGTTTCCTCTTTTCGACTTCACAGTGTGGATAAGCTTTTTTGTCCTTTTTTTCATCGTTATACTTTGTTTCCAACACAAATGTTTTGAAAGCAATGCAGTTCCATCTCTGAAATTTGTCCTTCCTTTCCATGAAGGATATTTTCTGAGTCTAATATTGCATCTACTTGTTTCTCTTTTCTTGTACTTTCAGTTTCTAGTTATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACTGAGAAAATCCACTTTTTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCTTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGGTTTGTGCTTTTGTTAATTTGGTTCCAAACCAAGTTTTAGATAAGGGAGGTGATTTTTTCATGTTAATTAGATATAATAGTTAGTTACAATAATTAGTTACAATAGTTAGTTAAGTTACACTAGATATAATAGTTAGTTAGTTGCATGCATGATTAGGCATTAAGCTTGTTAGATCTTATGCACCGTAATCTTTTGGGGATCCTTTTTGGCATATGTTTTGGTTATTTTAGTGGTGAGTTCTATTGTTGATCACATTGATAGGTGGTTCAAGATGGACCAGTCTTTATAAACTGCTCAAAACTCTAATGGCAATAGACGGCGTCCCTCTGAAGTAGAAGCTCCCGGTCCTTCTTGTCCTTACAACTAAGATAGTGACTTGATCAGTGTCGGTTTGACAAAAACATGGAAAAACGGATATGAGTTGAGTTTTGAAGCACACATATTCTTTTTCCCTTATTTTTGTTGAACTGAGATCGATCAAGTCATTGTCTGAGTGACAAGGTGGATTGAGACATTCTATTTTCGAAAGACAGTGTCTACCATCATTGAAATTTCCAACGATTTTCAAGTACCAGTCCACTGTAGACCACCTACCAAAATAGTCCACCATAGAGTTTGCAAAACATATGCATGAGTGTACGAGATGGTGGGAAATTTTTTATATTTTGTTTATCTTTTTAACACCTACTGCAAAAAAGGAAGACTAAATAAATAAAAGAAGACATTGAACCTTATTATCGTTAGTTGGTCATGGGTTATCATCTACTGCAGATGTTCCCAGCGTTTCCGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATTCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCATATATTAATGCATTGAAGGAAGATCCAGAACAATACAGGTTTCATGATTGACTAATTTTCCTTTGCTTTATTGTTCTTTATTTTCTTTTTGTTGTTCTTGATCAAAACCTTTGACTCAATAATTGAAAAAATAATAATAGTAATAATAATTAATGACGGCTGTAAGTAAGCCACTGAAGACTATGTCCAGCAGAGGTTTGGGTTGTGTGCAGTCACAACCCTTGATTCCATGCAATCAGCCACTTCTAGGCCATCTGATCAAGACCGCAACAACCCTGATGTGGTTGACTGCTGCATGCAGTCACACCGCGCACAATCCAGAGTTTGTTTGCCAAAATCTAAGTTAGCATCATATTATTCCCAACCGGAAAGAATAGAAAACTATTGACTTTACTTTGTATACGTTTTTGCTTAGTACTATCTGAAGGAAAATCTTTCAGCATAAATGAAAGCAGCATCAAATGATGTTTTATGTTACCCTCTACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGGTTTTAAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGCGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGGTAGCCCAATTCATTCAAGGCATCATGCATGGTTTGTAATTAGAATTATTCAAATAAAGTCTAGTTCTTATTTTAACAACCTCTAAGAAGTTCCAATAAAGCAGTTTGAAGTGATTAAATGGATTTATCCTGATATGTTTTCCTCCTACAATTGCTCTCAGTAGCAATACTATAGAAGTGTCTATTACATGCATCGTTATGAATGTTCGTAGGATTTATGATAGTTAATCTTTGGTGTCAACATAACAGCTTTGTGCGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTATCGTATGCTGCTTTCCAAGCTGGTTCAAGCTAAAGAGCTGCAAAGGGAATTTATTGACAGGTAGACATTAAACATTTCAATGCCCTTCAGTTGTTCTCCTCTCTGTCATCATGGCTTTTCATTTTAAATTTGATATAACTAAACTGTAGTTACTACAGTTATAACTTTGCTAAGTGTGTGTTTGATTTTACGGTAGAGATCATCATAATTGATTTTTATAAAACATGATATTGCAAAACTTGTTTATAACAAACTGAGAACTTGTTTCAAGCTTATAAAATTACCCTTGAATTTGTGAATTAGACTATTTTACTTCTGAGCTATGACTCAATCTGATATTCCATCTACCCTATAAATCTGAGTATGCTATTCACAAGTTAAAGTCTAATTTCCATCTACTCTATAAATCTGAGTATGCCTTTCACAAGTTAAAGTCTAATAGATGAGACAGATTTACAATTACAGCTTGATGGTTCTTCTCAGCAAGATTTAGATTCATATATATGTTTTTTTTTACCCCAGGGAGAAGAAGAAAAGAGAAGAAAGGGTTGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA

Protein sequence

>MS.gene028992.t1

MSATPYNVDNKKFLVMAALTSLSFSATTQCSLRKSTFSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFSSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN