AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene043354

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043354.t1 MTR_2g089795 97.569 288 6 1 16 303 1 287 0.0 576
MS.gene043354.t1 MTR_4g045980 75.610 287 67 3 16 299 1 287 9.51e-154 432
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene043354.t1 AT2G20890 66.316 285 88 4 14 297 1 278 8.97e-131 374

Find 60 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGCAATTCTGCTTCTAAAA+TGG 0.248095 2.2:+10150139 MS.gene043354:CDS
CCAACTCAAGAAGGCGAAAA+AGG 0.290072 2.2:-10151840 None:intergenic
GTACTTTCAGTTTCTAGTTA+TGG 0.302790 2.2:+10149971 MS.gene043354:intron
TTACAATGTCGACAACAAAA+AGG 0.323513 2.2:+10149763 MS.gene043354:CDS
CCCTTCAACTTCTCCTTCTC+TGG 0.328222 2.2:-10151746 None:intergenic
GAGCCACAGAAGGCTAATAA+TGG 0.333096 2.2:+10152750 MS.gene043354:CDS
GTTCTGATATGTTTGGAATT+CGG 0.343615 2.2:+10150081 MS.gene043354:CDS
TCATGAAACCTGTATTGTTC+TGG 0.346032 2.2:-10151215 None:intergenic
TATGATTCTGTATTTGCTCT+TGG 0.366606 2.2:+10151095 MS.gene043354:CDS
GCTTCAAGTTCTGATATGTT+TGG 0.372546 2.2:+10150074 MS.gene043354:CDS
GCTACCTTGTCTAAAATTGT+TGG 0.381994 2.2:-10151877 None:intergenic
TGCAAAGAAGTTGGAAGATT+GGG 0.391763 2.2:+10151684 MS.gene043354:CDS
TTGGTCGTTTATATGCCTTT+AGG 0.392956 2.2:-10150995 None:intergenic
CTCTTTAGCTTGAACCAGCT+TGG 0.406680 2.2:-10152214 None:intergenic
AGCATATATTAATGCATTGA+AGG 0.411154 2.2:+10151187 MS.gene043354:CDS
GAAGAAGAAAAGAGAAGAAA+GGG 0.415256 2.2:+10152725 MS.gene043354:CDS
AGAAGAAGAAAAGAGAAGAA+AGG 0.421659 2.2:+10152724 MS.gene043354:CDS
CAATGCATGTCTTCTGTCAC+AGG 0.424463 2.2:+10150167 MS.gene043354:CDS
AGCCACAGAAGGCTAATAAT+GGG 0.431472 2.2:+10152751 MS.gene043354:CDS
AGGAAGATCCAGAACAATAC+AGG 0.432189 2.2:+10151207 MS.gene043354:CDS
GAGCAAATACAGAATCATAT+TGG 0.436295 2.2:-10151091 None:intergenic
ATGCAAAGAAGTTGGAAGAT+TGG 0.439138 2.2:+10151683 MS.gene043354:CDS
CGACAAAAGAAGCGTTGATC+GGG 0.440456 2.2:+10152164 MS.gene043354:CDS
TCGTATGCTGCTTTCCAAGC+TGG 0.444672 2.2:+10152200 MS.gene043354:CDS
CAGAGTAGATGCAAAGAAGT+TGG 0.448896 2.2:+10151675 MS.gene043354:intron
AAGAAGCGTTGATCGGGACT+TGG 0.466265 2.2:+10152170 MS.gene043354:CDS
TTTCCCCGCTCAATTTGTAA+TGG 0.470303 2.2:-10152775 None:intergenic
TTGTTATAGATACTAGGAAT+TGG 0.474724 2.2:-10151014 None:intergenic
TATCTATAACAATGTGCTGC+AGG 0.485681 2.2:+10151025 MS.gene043354:CDS
GAAGAAAAGAGAAGAAAGGG+TGG 0.490264 2.2:+10152728 MS.gene043354:CDS
GGCTCAAAACTCAACTTCAC+TGG 0.505541 2.2:+10151711 MS.gene043354:CDS
ATTAATATATGCTTTGAAGA+TGG 0.505650 2.2:-10151177 None:intergenic
TAGGAAATTTAGCTTTGTCT+CGG 0.507415 2.2:-10150976 None:intergenic
TAGCTTTGTCTCGGAAACGC+TGG 0.510906 2.2:-10150967 None:intergenic
CACTGTCTATGATAAACTCA+TGG 0.515316 2.2:+10151124 MS.gene043354:CDS
TCGACAAAAGAAGCGTTGAT+CGG 0.519628 2.2:+10152163 MS.gene043354:CDS
AGCTTTGTCTCGGAAACGCT+GGG 0.521270 2.2:-10150966 None:intergenic
TTGCATTTGCCAACTCAAGA+AGG 0.522030 2.2:-10151849 None:intergenic
CATTGTGTTGGTGTTAGAGT+TGG 0.522081 2.2:+10150119 MS.gene043354:CDS
GACAAAGCTAAATTTCCTAA+AGG 0.527158 2.2:+10150980 MS.gene043354:CDS
TGCAAAGGGAATTTATTGAC+AGG 0.527306 2.2:+10152238 MS.gene043354:CDS
TCCAGAGAAGGAGAAGTTGA+AGG 0.535017 2.2:+10151745 MS.gene043354:CDS
GTCTATGATAAACTCATGGA+AGG 0.537912 2.2:+10151128 MS.gene043354:CDS
TTCAAGCTAAAGAGCTGCAA+AGG 0.544489 2.2:+10152223 MS.gene043354:CDS
GCCCCATTATTAGCCTTCTG+TGG 0.553177 2.2:-10152753 None:intergenic
CCAGAGAAGGAGAAGTTGAA+GGG 0.554923 2.2:+10151746 MS.gene043354:CDS
AGAAAGGGTGGAGCCACAGA+AGG 0.570202 2.2:+10152740 MS.gene043354:CDS
TATAGTCGTTTCTTTGCAGT+AGG 0.573306 2.2:+10151817 MS.gene043354:CDS
TCAAGCTAAAGAGCTGCAAA+GGG 0.583103 2.2:+10152224 MS.gene043354:CDS
GATTCCTCGTACCATTGTGT+TGG 0.585869 2.2:+10150107 MS.gene043354:CDS
GAAGTTGGAAGATTGGGCTA+AGG 0.605561 2.2:+10151690 MS.gene043354:CDS
AGCACATTGTTATAGATACT+AGG 0.605595 2.2:-10151020 None:intergenic
CAGAGAAGGAGAAGTTGAAG+GGG 0.608753 2.2:+10151747 MS.gene043354:CDS
GGAAGGGTATTCTAGTGAAG+AGG 0.630073 2.2:+10151145 MS.gene043354:CDS
ACATATCAGAACTTGAAGCA+AGG 0.636756 2.2:-10150070 None:intergenic
GTCAACATAACAGCTTTGTG+CGG 0.651736 2.2:+10152131 MS.gene043354:intron
CAACTCTAACACCAACACAA+TGG 0.660091 2.2:-10150118 None:intergenic
TCTATGATAAACTCATGGAA+GGG 0.662278 2.2:+10151129 MS.gene043354:CDS
GCCACAGAAGGCTAATAATG+GGG 0.663091 2.2:+10152752 MS.gene043354:CDS
AACACCAACACAATGGTACG+AGG 0.686845 2.2:-10150111 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTAATAATAATTAATGA+CGG + chr2.2:10151327-10151346 MS.gene043354:intron 10.0%
!! AAAGTATAACGATGAAAAAA+AGG - chr2.2:10149836-10149855 None:intergenic 20.0%
!! AATAAAGAACAATAAAGCAA+AGG - chr2.2:10151253-10151272 None:intergenic 20.0%
!! GATTTATGATAGTTAATCTT+TGG + chr2.2:10152107-10152126 MS.gene043354:intron 20.0%
!!! ATATGTTTTGGTTATTTTAG+TGG + chr2.2:10150400-10150419 MS.gene043354:intron 20.0%
!!! ATTAATATATGCTTTGAAGA+TGG - chr2.2:10151180-10151199 None:intergenic 20.0%
!!! TTTTTCAATTATTGAGTCAA+AGG - chr2.2:10151301-10151320 None:intergenic 20.0%
! AATAGCATACTCAGATTTAT+AGG - chr2.2:10152551-10152570 None:intergenic 25.0%
! AGCATATATTAATGCATTGA+AGG + chr2.2:10151187-10151206 MS.gene043354:CDS 25.0%
! ATAGCATACTCAGATTTATA+GGG - chr2.2:10152550-10152569 None:intergenic 25.0%
! ATCTCAGTTCAACAAAAATA+AGG - chr2.2:10150644-10150663 None:intergenic 25.0%
! TCTCAGTTCAACAAAAATAA+GGG - chr2.2:10150643-10150662 None:intergenic 25.0%
! TTGACAAAAACATGGAAAAA+CGG + chr2.2:10150581-10150600 MS.gene043354:intron 25.0%
! TTGTTATAGATACTAGGAAT+TGG - chr2.2:10151017-10151036 None:intergenic 25.0%
!! CAATAGTTTTCTATTCTTTC+CGG - chr2.2:10151558-10151577 None:intergenic 25.0%
!! TATGATGCTAACTTAGATTT+TGG - chr2.2:10151525-10151544 None:intergenic 25.0%
!!! ATATGTTTTTTTTTACCCCA+GGG + chr2.2:10152701-10152720 MS.gene043354:intron 25.0%
!!! ATTAGACTTTAACTTGTGAA+AGG - chr2.2:10152569-10152588 None:intergenic 25.0%
!!! TAAGTGTGTGTTTGATTTTA+CGG + chr2.2:10152370-10152389 MS.gene043354:intron 25.0%
!!! TATATGTTTTTTTTTACCCC+AGG + chr2.2:10152700-10152719 MS.gene043354:intron 25.0%
AAAACTCTAATGGCAATAGA+CGG + chr2.2:10150486-10150505 MS.gene043354:intron 30.0%
AACCAAAACATATGCCAAAA+AGG - chr2.2:10150393-10150412 None:intergenic 30.0%
AAGTCACTATCTTAGTTGTA+AGG - chr2.2:10150548-10150567 None:intergenic 30.0%
ACTCAGATTTATAGAGTAGA+TGG - chr2.2:10152594-10152613 None:intergenic 30.0%
AGAAAATATCCTTCATGGAA+AGG - chr2.2:10149915-10149934 None:intergenic 30.0%
AGAAGAAGAAAAGAGAAGAA+AGG + chr2.2:10152724-10152743 MS.gene043354:CDS 30.0%
AGCACATTGTTATAGATACT+AGG - chr2.2:10151023-10151042 None:intergenic 30.0%
AGTCCAATTCACAAATTCAA+GGG - chr2.2:10152486-10152505 None:intergenic 30.0%
ATCACTTCAAACTGCTTTAT+TGG - chr2.2:10151990-10152009 None:intergenic 30.0%
ATCGTTGGAAATTTCAATGA+TGG - chr2.2:10150732-10150751 None:intergenic 30.0%
ATGACCAACTAACGATAATA+AGG - chr2.2:10150922-10150941 None:intergenic 30.0%
CTATTGTTGATCACATTGAT+AGG + chr2.2:10150429-10150448 MS.gene043354:intron 30.0%
GAAGAAGAAAAGAGAAGAAA+GGG + chr2.2:10152725-10152744 MS.gene043354:CDS 30.0%
GACAAAGCTAAATTTCCTAA+AGG + chr2.2:10150980-10150999 MS.gene043354:CDS 30.0%
GAGCAAATACAGAATCATAT+TGG - chr2.2:10151094-10151113 None:intergenic 30.0%
GATTTACAATTACAGCTTGA+TGG + chr2.2:10152650-10152669 MS.gene043354:intron 30.0%
TAAACTGCTCAAAACTCTAA+TGG + chr2.2:10150476-10150495 MS.gene043354:intron 30.0%
TAGTCCAATTCACAAATTCA+AGG - chr2.2:10152487-10152506 None:intergenic 30.0%
TATGATTCTGTATTTGCTCT+TGG + chr2.2:10151095-10151114 MS.gene043354:CDS 30.0%
TATTATCGTTAGTTGGTCAT+GGG + chr2.2:10150922-10150941 MS.gene043354:intron 30.0%
TCTATGATAAACTCATGGAA+GGG + chr2.2:10151129-10151148 MS.gene043354:CDS 30.0%
TGAACCTTATTATCGTTAGT+TGG + chr2.2:10150915-10150934 MS.gene043354:intron 30.0%
TGCTTTCAAAACATTTGTGT+TGG - chr2.2:10149863-10149882 None:intergenic 30.0%
TTACAATGTCGACAACAAAA+AGG + chr2.2:10149763-10149782 MS.gene043354:CDS 30.0%
TTACCCTTGAATTTGTGAAT+TGG + chr2.2:10152480-10152499 MS.gene043354:intron 30.0%
TTATTATCGTTAGTTGGTCA+TGG + chr2.2:10150921-10150940 MS.gene043354:intron 30.0%
TTTAACACCTACTGCAAAAA+AGG + chr2.2:10150866-10150885 MS.gene043354:intron 30.0%
TTTGAGCAGTTTATAAAGAC+TGG - chr2.2:10150469-10150488 None:intergenic 30.0%
! AGAACCAACAATTTTAGACA+AGG + chr2.2:10151873-10151892 MS.gene043354:CDS 30.0%
! AGCAGTTTGAAGTGATTAAA+TGG + chr2.2:10151994-10152013 MS.gene043354:intron 30.0%
! CATATGTTTTGCAAACTCTA+TGG - chr2.2:10150799-10150818 None:intergenic 30.0%
! GGTTTGTGCTTTTGTTAATT+TGG + chr2.2:10150188-10150207 MS.gene043354:intron 30.0%
! GTTCTGATATGTTTGGAATT+CGG + chr2.2:10150081-10150100 MS.gene043354:CDS 30.0%
! TTTTGCTTAGTACTATCTGA+AGG + chr2.2:10151596-10151615 MS.gene043354:intron 30.0%
!! ATCCTTTTTGGCATATGTTT+TGG + chr2.2:10150388-10150407 MS.gene043354:intron 30.0%
!! GTACTTTCAGTTTCTAGTTA+TGG + chr2.2:10149971-10149990 MS.gene043354:intron 30.0%
!! TAGGAAATTTAGCTTTGTCT+CGG - chr2.2:10150979-10150998 None:intergenic 30.0%
!! TTTTTGTTGTCGACATTGTA+AGG - chr2.2:10149764-10149783 None:intergenic 30.0%
!!! CCAAACCAAGTTTTAGATAA+GGG + chr2.2:10150213-10150232 MS.gene043354:intron 30.0%
!!! TCCAAACCAAGTTTTAGATA+AGG + chr2.2:10150212-10150231 MS.gene043354:intron 30.0%
AAAGGATCCCCAAAAGATTA+CGG - chr2.2:10150375-10150394 None:intergenic 35.0%
AAGGATATTGCAAAAAGAGC+AGG + chr2.2:10151775-10151794 MS.gene043354:CDS 35.0%
AATATCCTTCATGGAAAGGA+AGG - chr2.2:10149911-10149930 None:intergenic 35.0%
ACATATCAGAACTTGAAGCA+AGG - chr2.2:10150073-10150092 None:intergenic 35.0%
ACTCAGATTTATAGGGTAGA+TGG - chr2.2:10152543-10152562 None:intergenic 35.0%
AGCATCATATTATTCCCAAC+CGG + chr2.2:10151536-10151555 MS.gene043354:intron 35.0%
AGTTAGTTGCATGCATGATT+AGG + chr2.2:10150324-10150343 MS.gene043354:intron 35.0%
ATGCAAAGAAGTTGGAAGAT+TGG + chr2.2:10151683-10151702 MS.gene043354:CDS 35.0%
ATGTCGACAACAAAAAGGTT+TGG + chr2.2:10149768-10149787 MS.gene043354:intron 35.0%
CACTGTCTATGATAAACTCA+TGG + chr2.2:10151124-10151143 MS.gene043354:CDS 35.0%
CATGATGCCTTGAATGAATT+GGG - chr2.2:10151902-10151921 None:intergenic 35.0%
GACTCAGAAAATATCCTTCA+TGG - chr2.2:10149920-10149939 None:intergenic 35.0%
GTCTATGATAAACTCATGGA+AGG + chr2.2:10151128-10151147 MS.gene043354:CDS 35.0%
TATAGTCGTTTCTTTGCAGT+AGG + chr2.2:10151817-10151836 MS.gene043354:CDS 35.0%
TATCTATAACAATGTGCTGC+AGG + chr2.2:10151025-10151044 MS.gene043354:CDS 35.0%
TCATGAAACCTGTATTGTTC+TGG - chr2.2:10151218-10151237 None:intergenic 35.0%
TCTTAGTTGTAAGGACAAGA+AGG - chr2.2:10150539-10150558 None:intergenic 35.0%
TGCAAAGAAGTTGGAAGATT+GGG + chr2.2:10151684-10151703 MS.gene043354:CDS 35.0%
TGCAAAGGGAATTTATTGAC+AGG + chr2.2:10152238-10152257 MS.gene043354:CDS 35.0%
TGTCGACAACAAAAAGGTTT+GGG + chr2.2:10149769-10149788 MS.gene043354:intron 35.0%
TTGGTCGTTTATATGCCTTT+AGG - chr2.2:10150998-10151017 None:intergenic 35.0%
TTGTAGGAGGAAAACATATC+AGG - chr2.2:10152026-10152045 None:intergenic 35.0%
TTGTTGATCACATTGATAGG+TGG + chr2.2:10150432-10150451 MS.gene043354:intron 35.0%
! AGTTTTCTATTCTTTCCGGT+TGG - chr2.2:10151554-10151573 None:intergenic 35.0%
! ATGTTTTGCAAACTCTATGG+TGG - chr2.2:10150796-10150815 None:intergenic 35.0%
! CCCTTATCTAAAACTTGGTT+TGG - chr2.2:10150216-10150235 None:intergenic 35.0%
! CTTATGCACCGTAATCTTTT+GGG + chr2.2:10150364-10150383 MS.gene043354:intron 35.0%
! GCTACCTTGTCTAAAATTGT+TGG - chr2.2:10151880-10151899 None:intergenic 35.0%
! GCTTCAAGTTCTGATATGTT+TGG + chr2.2:10150074-10150093 MS.gene043354:CDS 35.0%
! GCTTTATTGGAACTTCTTAG+AGG - chr2.2:10151977-10151996 None:intergenic 35.0%
! GTTTTCTATTCTTTCCGGTT+GGG - chr2.2:10151553-10151572 None:intergenic 35.0%
! TCTTATGCACCGTAATCTTT+TGG + chr2.2:10150363-10150382 MS.gene043354:intron 35.0%
! TGGCAATTCTGCTTCTAAAA+TGG + chr2.2:10150139-10150158 MS.gene043354:CDS 35.0%
! TTATGCACCGTAATCTTTTG+GGG + chr2.2:10150365-10150384 MS.gene043354:intron 35.0%
!! AATCTTTTGGGGATCCTTTT+TGG + chr2.2:10150376-10150395 MS.gene043354:intron 35.0%
!! AGAAGTTGAAGGGGTTTTAA+AGG + chr2.2:10151756-10151775 MS.gene043354:CDS 35.0%
!! AGATTTTGGCAAACAAACTC+TGG - chr2.2:10151511-10151530 None:intergenic 35.0%
!!! AACCAAGTTTTAGATAAGGG+AGG + chr2.2:10150216-10150235 MS.gene043354:intron 35.0%
!!! AACTCTATGGTGGACTATTT+TGG - chr2.2:10150786-10150805 None:intergenic 35.0%
!!! TAGTCTTCCTTTTTTGCAGT+AGG - chr2.2:10150876-10150895 None:intergenic 35.0%
AACAAACTCTGGATTGTGTG+CGG - chr2.2:10151500-10151519 None:intergenic 40.0%
AAGGTAGCCCAATTCATTCA+AGG + chr2.2:10151892-10151911 MS.gene043354:intron 40.0%
AAGTCATTGTCTGAGTGACA+AGG + chr2.2:10150669-10150688 MS.gene043354:intron 40.0%
AGCCACAGAAGGCTAATAAT+GGG + chr2.2:10152751-10152770 MS.gene043354:CDS 40.0%
AGGAAGATCCAGAACAATAC+AGG + chr2.2:10151207-10151226 MS.gene043354:CDS 40.0%
ATATGCATGAGTGTACGAGA+TGG + chr2.2:10150814-10150833 MS.gene043354:intron 40.0%
CAACTCTAACACCAACACAA+TGG - chr2.2:10150121-10150140 None:intergenic 40.0%
CAGAGTAGATGCAAAGAAGT+TGG + chr2.2:10151675-10151694 MS.gene043354:intron 40.0%
CATTGATAGGTGGTTCAAGA+TGG + chr2.2:10150442-10150461 MS.gene043354:intron 40.0%
CTTTGCATCTACTCTGTAGA+GGG - chr2.2:10151671-10151690 None:intergenic 40.0%
GAAGAAAAGAGAAGAAAGGG+TGG + chr2.2:10152728-10152747 MS.gene043354:CDS 40.0%
GACTGGTACTTGAAAATCGT+TGG - chr2.2:10150747-10150766 None:intergenic 40.0%
GATAGTGACTTGATCAGTGT+CGG + chr2.2:10150557-10150576 MS.gene043354:intron 40.0%
GCAAAAAGAGCAGGAGAAAA+GGG + chr2.2:10151784-10151803 MS.gene043354:CDS 40.0%
GCATCGTTATGAATGTTCGT+AGG + chr2.2:10152085-10152104 MS.gene043354:intron 40.0%
GCATGATGCCTTGAATGAAT+TGG - chr2.2:10151903-10151922 None:intergenic 40.0%
GGAAGGACAAATTTCAGAGA+TGG - chr2.2:10149894-10149913 None:intergenic 40.0%
TCAAGCTAAAGAGCTGCAAA+GGG + chr2.2:10152224-10152243 MS.gene043354:CDS 40.0%
TCTTTGCATCTACTCTGTAG+AGG - chr2.2:10151672-10151691 None:intergenic 40.0%
TGCAAAAAGAGCAGGAGAAA+AGG + chr2.2:10151783-10151802 MS.gene043354:CDS 40.0%
TTCAAGCTAAAGAGCTGCAA+AGG + chr2.2:10152223-10152242 MS.gene043354:CDS 40.0%
TTGCATTTGCCAACTCAAGA+AGG - chr2.2:10151852-10151871 None:intergenic 40.0%
TTGCTACTGAGAGCAATTGT+AGG - chr2.2:10152042-10152061 None:intergenic 40.0%
TTTGTCCTTCCTTTCCATGA+AGG + chr2.2:10149903-10149922 MS.gene043354:intron 40.0%
! CACCTCCCTTATCTAAAACT+TGG - chr2.2:10150221-10150240 None:intergenic 40.0%
! GTCAACATAACAGCTTTGTG+CGG + chr2.2:10152131-10152150 MS.gene043354:intron 40.0%
! GTTGAGTTTTCATCCAGAGA+AGG + chr2.2:10151733-10151752 MS.gene043354:CDS 40.0%
! TCTCTTTTCTTCTTCTCCCT+GGG - chr2.2:10152720-10152739 None:intergenic 40.0%
! TTCATTCAAGGCATCATGCA+TGG + chr2.2:10151904-10151923 MS.gene043354:intron 40.0%
! TTCTCTTTTCTTCTTCTCCC+TGG - chr2.2:10152721-10152740 None:intergenic 40.0%
!! CATTGTGTTGGTGTTAGAGT+TGG + chr2.2:10150119-10150138 MS.gene043354:CDS 40.0%
!! GTGTCGGTTTGACAAAAACA+TGG + chr2.2:10150573-10150592 MS.gene043354:intron 40.0%
!! TCGACAAAAGAAGCGTTGAT+CGG + chr2.2:10152163-10152182 MS.gene043354:CDS 40.0%
!!! CTATGGTGGACTATTTTGGT+AGG - chr2.2:10150782-10150801 None:intergenic 40.0%
AACACCAACACAATGGTACG+AGG - chr2.2:10150114-10150133 None:intergenic 45.0%
ACAGAGAGGAGAACAACTGA+AGG - chr2.2:10152286-10152305 None:intergenic 45.0%
ACTATGTCCAGCAGAGGTTT+GGG + chr2.2:10151370-10151389 MS.gene043354:intron 45.0%
CAATGCATGTCTTCTGTCAC+AGG + chr2.2:10150167-10150186 MS.gene043354:CDS 45.0%
CACACTGTGAAGTCGAAAAG+AGG - chr2.2:10149798-10149817 None:intergenic 45.0%
CAGAGAAGGAGAAGTTGAAG+GGG + chr2.2:10151747-10151766 MS.gene043354:CDS 45.0%
CAGAGAGGAGAACAACTGAA+GGG - chr2.2:10152285-10152304 None:intergenic 45.0%
CCAACTCAAGAAGGCGAAAA+AGG - chr2.2:10151843-10151862 None:intergenic 45.0%
CCAGAGAAGGAGAAGTTGAA+GGG + chr2.2:10151746-10151765 MS.gene043354:CDS 45.0%
CTACTGAGAGCAATTGTAGG+AGG - chr2.2:10152039-10152058 None:intergenic 45.0%
GAAAAGCCATGATGACAGAG+AGG - chr2.2:10152300-10152319 None:intergenic 45.0%
GAAGTTGGAAGATTGGGCTA+AGG + chr2.2:10151690-10151709 MS.gene043354:CDS 45.0%
GAGCCACAGAAGGCTAATAA+TGG + chr2.2:10152750-10152769 MS.gene043354:CDS 45.0%
GATTCCTCGTACCATTGTGT+TGG + chr2.2:10150107-10150126 MS.gene043354:CDS 45.0%
GCCACAGAAGGCTAATAATG+GGG + chr2.2:10152752-10152771 MS.gene043354:CDS 45.0%
GGCTCAAAACTCAACTTCAC+TGG + chr2.2:10151711-10151730 MS.gene043354:CDS 45.0%
GGCTGATTGCATGGAATCAA+GGG - chr2.2:10151412-10151431 None:intergenic 45.0%
GTTGTAAGGACAAGAAGGAC+CGG - chr2.2:10150534-10150553 None:intergenic 45.0%
TCATTGTCTGAGTGACAAGG+TGG + chr2.2:10150672-10150691 MS.gene043354:intron 45.0%
TCCAGAGAAGGAGAAGTTGA+AGG + chr2.2:10151745-10151764 MS.gene043354:CDS 45.0%
TGGCTGATTGCATGGAATCA+AGG - chr2.2:10151413-10151432 None:intergenic 45.0%
TGTTCTCCTCTCTGTCATCA+TGG + chr2.2:10152291-10152310 MS.gene043354:intron 45.0%
TTGATCAGATGGCCTAGAAG+TGG - chr2.2:10151433-10151452 None:intergenic 45.0%
TTGTAAGGACAAGAAGGACC+GGG - chr2.2:10150533-10150552 None:intergenic 45.0%
TTGTTGCGGTCTTGATCAGA+TGG - chr2.2:10151444-10151463 None:intergenic 45.0%
! CTCTTTTCGACTTCACAGTG+TGG + chr2.2:10149796-10149815 MS.gene043354:intron 45.0%
! CTCTTTTCTTCTTCTCCCTG+GGG - chr2.2:10152719-10152738 None:intergenic 45.0%
! TTTTGGTAGGTGGTCTACAG+TGG - chr2.2:10150769-10150788 None:intergenic 45.0%
!! CCTTTTTCGCCTTCTTGAGT+TGG + chr2.2:10151840-10151859 MS.gene043354:CDS 45.0%
!! CGACAAAAGAAGCGTTGATC+GGG + chr2.2:10152164-10152183 MS.gene043354:CDS 45.0%
!! CTCTTTAGCTTGAACCAGCT+TGG - chr2.2:10152217-10152236 None:intergenic 45.0%
!! GGAAGGGTATTCTAGTGAAG+AGG + chr2.2:10151145-10151164 MS.gene043354:CDS 45.0%
!!! TGGTGGACTATTTTGGTAGG+TGG - chr2.2:10150779-10150798 None:intergenic 45.0%
ATGCAGCAGTCAACCACATC+AGG - chr2.2:10151468-10151487 None:intergenic 50.0%
CAACCACATCAGGGTTGTTG+CGG - chr2.2:10151458-10151477 None:intergenic 50.0%
CCATGCAATCAGCCACTTCT+AGG + chr2.2:10151418-10151437 MS.gene043354:intron 50.0%
CCCTTCAACTTCTCCTTCTC+TGG - chr2.2:10151749-10151768 None:intergenic 50.0%
CCTAGAAGTGGCTGATTGCA+TGG - chr2.2:10151421-10151440 None:intergenic 50.0%
CTGAAGACTATGTCCAGCAG+AGG + chr2.2:10151364-10151383 MS.gene043354:intron 50.0%
CTGCTGGACATAGTCTTCAG+TGG - chr2.2:10151364-10151383 None:intergenic 50.0%
GACTATGTCCAGCAGAGGTT+TGG + chr2.2:10151369-10151388 MS.gene043354:intron 50.0%
GCATGAGTGTACGAGATGGT+GGG + chr2.2:10150818-10150837 MS.gene043354:intron 50.0%
TGCAGCAGTCAACCACATCA+GGG - chr2.2:10151467-10151486 None:intergenic 50.0%
TGCATGAGTGTACGAGATGG+TGG + chr2.2:10150817-10150836 MS.gene043354:intron 50.0%
! AGCTTTGTCTCGGAAACGCT+GGG - chr2.2:10150969-10150988 None:intergenic 50.0%
!! AAGAAGCGTTGATCGGGACT+TGG + chr2.2:10152170-10152189 MS.gene043354:CDS 50.0%
!! GCCCCATTATTAGCCTTCTG+TGG - chr2.2:10152756-10152775 None:intergenic 50.0%
!! TAGCTTTGTCTCGGAAACGC+TGG - chr2.2:10150970-10150989 None:intergenic 50.0%
!! TCGTATGCTGCTTTCCAAGC+TGG + chr2.2:10152200-10152219 MS.gene043354:CDS 50.0%
ACCGGGAGCTTCTACTTCAG+AGG - chr2.2:10150516-10150535 None:intergenic 55.0%
AGAAAGGGTGGAGCCACAGA+AGG + chr2.2:10152740-10152759 MS.gene043354:CDS 55.0%
AGACCGCAACAACCCTGATG+TGG + chr2.2:10151452-10151471 MS.gene043354:intron 55.0%
CACACAACCCAAACCTCTGC+TGG - chr2.2:10151380-10151399 None:intergenic 55.0%
CCGGGAGCTTCTACTTCAGA+GGG - chr2.2:10150515-10150534 None:intergenic 55.0%
GTAGGTGGTCTACAGTGGAC+TGG - chr2.2:10150764-10150783 None:intergenic 55.0%
!! CCCTCTGAAGTAGAAGCTCC+CGG + chr2.2:10150512-10150531 MS.gene043354:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 10149749 10152788 10149749 ID=MS.gene043354
chr2.2 mRNA 10149749 10152788 10149749 ID=MS.gene043354.t1;Parent=MS.gene043354
chr2.2 exon 10149749 10149784 10149749 ID=MS.gene043354.t1.exon1;Parent=MS.gene043354.t1
chr2.2 CDS 10149749 10149784 10149749 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
chr2.2 exon 10149981 10150188 10149981 ID=MS.gene043354.t1.exon2;Parent=MS.gene043354.t1
chr2.2 CDS 10149981 10150188 10149981 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
chr2.2 exon 10150961 10151228 10150961 ID=MS.gene043354.t1.exon3;Parent=MS.gene043354.t1
chr2.2 CDS 10150961 10151228 10150961 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
chr2.2 exon 10151678 10151894 10151678 ID=MS.gene043354.t1.exon4;Parent=MS.gene043354.t1
chr2.2 CDS 10151678 10151894 10151678 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
chr2.2 exon 10152144 10152259 10152144 ID=MS.gene043354.t1.exon5;Parent=MS.gene043354.t1
chr2.2 CDS 10152144 10152259 10152144 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
chr2.2 exon 10152722 10152788 10152722 ID=MS.gene043354.t1.exon6;Parent=MS.gene043354.t1
chr2.2 CDS 10152722 10152788 10152722 ID=cds.MS.gene043354.t1;Parent=MS.gene043354.t1
Gene Sequence

>MS.gene043354

ATGTCAGCGACTCCTTACAATGTCGACAACAAAAAGGTTTGGGTTTCCTCTTTTCGACTTCACAGTGTGGATAAGCTTTTTTGTCCTTTTTTTCATCGTTATACTTTGTTTCCAACACAAATGTTTTGAAAGCAATGCAGTTCCATCTCTGAAATTTGTCCTTCCTTTCCATGAAGGATATTTTCTGAGTCTAATATTGCATCTACTTGTTTCTCTTTTCTTGTACTTTCAGTTTCTAGTTATGGCTGCACTAACTTCTTTGTCATTCTCAGCAACTACTCAATGCTCACTGAGAAAATTCACTTTTTCTTCTACTCGTTTCCTTGCTTCAAGTTCTGATATGTTTGGAATTCGGACAGATTCCTCGTACCATTGTGTTGGTGTTAGAGTTGGCAATTCTGCTTCTAAAATGGTTATTCAATGCATGTCTTCTGTCACAGGTTTGTGCTTTTGTTAATTTGGTTCCAAACCAAGTTTTAGATAAGGGAGGTGATTTTTTCATGTTAATTAGATATAATAGTTAGTTACAATAATTAGTTACAATAGTTAGTTAAGTTACACTAGATATAATAGTTAGTTAGTTGCATGCATGATTAGGCATTAAGCTTATTAGATCTTATGCACCGTAATCTTTTGGGGATCCTTTTTGGCATATGTTTTGGTTATTTTAGTGGTGAGTTCTATTGTTGATCACATTGATAGGTGGTTCAAGATGGACCAGTCTTTATAAACTGCTCAAAACTCTAATGGCAATAGACGGCGTCCCTCTGAAGTAGAAGCTCCCGGTCCTTCTTGTCCTTACAACTAAGATAGTGACTTGATCAGTGTCGGTTTGACAAAAACATGGAAAAACGGATATGAGTTGAGTTTTGAAGCACACATATTCTTTTTCCCTTATTTTTGTTGAACTGAGATCGATCAAGTCATTGTCTGAGTGACAAGGTGGATTGAGACATTCTATTTTCGAAAGACAGTGTCTACCATCATTGAAATTTCCAACGATTTTCAAGTACCAGTCCACTGTAGACCACCTACCAAAATAGTCCACCATAGAGTTTGCAAAACATATGCATGAGTGTACGAGATGGTGGGAAATTTTTTATATTTTGTTTATCTTTTTAACACCTACTGCAAAAAAGGAAGACTAAATAAATAAAAGAAGACATTGAACCTTATTATCGTTAGTTGGTCATGGGTTATCATCTACTGCAGATGTTCCCAGCGTTTCCGAGACAAAGCTAAATTTCCTAAAGGCATATAAACGACCAATTCCTAGTATCTATAACAATGTGCTGCAGGAGCTCATTGTTCAACATCATTTAATGAGATACAAGACATCATACCAATATGATTCTGTATTTGCTCTTGGTTTTGTCACTGTCTATGATAAACTCATGGAAGGGTATTCTAGTGAAGAGGAGCGAGATACCATCTTCAAAGCATATATTAATGCATTGAAGGAAGATCCAGAACAATACAGGTTTCATGATTGACTAATTTTCCTTTGCTTTATTGTTCTTTATTTTCTTTTTGTTGTTCTTGATCAAAACCTTTGACTCAATAATTGAAAAAATAATAATAGTAATAATAATTAATGACGGCTGTAAGTAAGCCACTGAAGACTATGTCCAGCAGAGGTTTGGGTTGTGTGCAGTCACAACCCTTGATTCCATGCAATCAGCCACTTCTAGGCCATCTGATCAAGACCGCAACAACCCTGATGTGGTTGACTGCTGCATGCAGTCACACCGCACACAATCCAGAGTTTGTTTGCCAAAATCTAAGTTAGCATCATATTATTCCCAACCGGAAAGAATAGAAAACTATTGACTTTACTTTGTATACGTTTTTGCTTAGTACTATCTGAAGGAAAATCTTTCAGCATAAATGAAAGCAGCATCAAATGATGTTTTATGTTACCCTCTACAGAGTAGATGCAAAGAAGTTGGAAGATTGGGCTAAGGCTCAAAACTCAACTTCACTGGTTGAGTTTTCATCCAGAGAAGGAGAAGTTGAAGGGGTTTTAAAGGATATTGCAAAAAGAGCAGGAGAAAAGGGCGAATTCAGTTATAGTCGTTTCTTTGCAGTAGGCCTTTTTCGCCTTCTTGAGTTGGCAAATGCAACAGAACCAACAATTTTAGACAAGGTAGCCCAATTCATTCAAGGCATCATGCATGGTTTGTAATTAGAATTATTCAAATAAAGTCTAGTTCTTATTTTAACAACCTCTAAGAAGTTCCAATAAAGCAGTTTGAAGTGATTAAATGGATTTATCCTGATATGTTTTCCTCCTACAATTGCTCTCAGTAGCAATACTATAGAAGTGTCTATTACATGCATCGTTATGAATGTTCGTAGGATTTATGATAGTTAATCTTTGGTGTCAACATAACAGCTTTGTGCGGCTTTGAACATCGACAAAAGAAGCGTTGATCGGGACTTGGATGTGTATCGTATGCTGCTTTCCAAGCTGGTTCAAGCTAAAGAGCTGCAAAGGGAATTTATTGACAGGTAGACATTAAACATTTCAATGCCCTTCAGTTGTTCTCCTCTCTGTCATCATGGCTTTTCATTTTAAATTTGATATAACTAAACTGTAGTTACTACAGTTATAACTTTGCTAAGTGTGTGTTTGATTTTACGGTAGAGATCATCATAATTGATTTTTATAAAACATGATATTGCAAAACTTGTTTATAACAAACTGAGAACTTGTTTCAAGCTTATAAAATTACCCTTGAATTTGTGAATTGGACTATTTTACTTCTGAGCTATGACTCAATCTGATATTCCATCTACCCTATAAATCTGAGTATGCTATTCACAAGTTAAAGTCTAATTTCCATCTACTCTATAAATCTGAGTATGCCTTTCACAAGTTAAAGTCTAATAGATGAGACAGATTTACAATTACAGCTTGATGGTTCTTCTCAGCAAGATTTAGATTCATATATATGTTTTTTTTTACCCCAGGGAGAAGAAGAAAAGAGAAGAAAGGGTGGAGCCACAGAAGGCTAATAATGGGGCCATTACAAATTGA
Protein sequence

>MS.gene043354.t1

MSATPYNVDNKKFLVMAALTSLSFSATTQCSLRKFTFSSTRFLASSSDMFGIRTDSSYHCVGVRVGNSASKMVIQCMSSVTDVPSVSETKLNFLKAYKRPIPSIYNNVLQELIVQHHLMRYKTSYQYDSVFALGFVTVYDKLMEGYSSEEERDTIFKAYINALKEDPEQYRVDAKKLEDWAKAQNSTSLVEFSSREGEVEGVLKDIAKRAGEKGEFSYSRFFAVGLFRLLELANATEPTILDKLCAALNIDKRSVDRDLDVYRMLLSKLVQAKELQREFIDREKKKREERVEPQKANNGAITN