Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35738.t1 | XP_013465003.1 | 98.6 | 288 | 3 | 1 | 1 | 288 | 1 | 287 | 3.60E-148 | 534.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35738.t1 | Q7XAB8 | 68.6 | 283 | 83 | 3 | 1 | 282 | 1 | 278 | 5.9e-99 | 362.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35738.t1 | I3SMR8 | 98.6 | 288 | 3 | 1 | 1 | 288 | 1 | 287 | 2.6e-148 | 534.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene35738 | 0.805669 | 1.19E-49 | -1.69E-46 |
| MS.gene049491 | MS.gene35738 | 0.826699 | 2.35E-54 | -1.69E-46 |
| MS.gene049614 | MS.gene35738 | 0.833337 | 5.65E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene35738 | 0.832409 | 9.61E-56 | -1.69E-46 |
| MS.gene049662 | MS.gene35738 | 0.822102 | 2.84E-53 | -1.69E-46 |
| MS.gene049758 | MS.gene35738 | 0.81151 | 6.75E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene35738 | 0.866827 | 2.14E-65 | -1.69E-46 |
| MS.gene050128 | MS.gene35738 | 0.812852 | 3.44E-51 | -1.69E-46 |
| MS.gene050301 | MS.gene35738 | 0.810797 | 9.64E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene35738 | 0.819671 | 1.03E-52 | -1.69E-46 |
| MS.gene050404 | MS.gene35738 | 0.816524 | 5.29E-52 | -1.69E-46 |
| MS.gene050432 | MS.gene35738 | 0.825791 | 3.87E-54 | -1.69E-46 |
| MS.gene050529 | MS.gene35738 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene05053 | MS.gene35738 | 0.81922 | 1.30E-52 | -1.69E-46 |
| MS.gene050767 | MS.gene35738 | 0.846514 | 2.07E-59 | -1.69E-46 |
| MS.gene050770 | MS.gene35738 | 0.848994 | 4.30E-60 | -1.69E-46 |
| MS.gene05101 | MS.gene35738 | 0.83426 | 3.32E-56 | -1.69E-46 |
| MS.gene051228 | MS.gene35738 | 0.829129 | 6.12E-55 | -1.69E-46 |
| MS.gene051471 | MS.gene35738 | 0.868175 | 7.93E-66 | -1.69E-46 |
| MS.gene052078 | MS.gene35738 | 0.851408 | 9.05E-61 | -1.69E-46 |
| MS.gene052178 | MS.gene35738 | 0.83768 | 4.51E-57 | -1.69E-46 |
| MS.gene052188 | MS.gene35738 | 0.818456 | 1.94E-52 | -1.69E-46 |
| MS.gene052290 | MS.gene35738 | 0.894137 | 3.27E-75 | -1.69E-46 |
| MS.gene052310 | MS.gene35738 | 0.843824 | 1.10E-58 | -1.69E-46 |
| MS.gene052326 | MS.gene35738 | 0.842892 | 1.96E-58 | -1.69E-46 |
| MS.gene052340 | MS.gene35738 | 0.830501 | 2.83E-55 | -1.69E-46 |
| MS.gene052379 | MS.gene35738 | 0.82888 | 7.03E-55 | -1.69E-46 |
| MS.gene053073 | MS.gene35738 | 0.802856 | 4.60E-49 | -1.69E-46 |
| MS.gene053103 | MS.gene35738 | 0.823969 | 1.04E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene35738 | 0.830366 | 3.06E-55 | -1.69E-46 |
| MS.gene053322 | MS.gene35738 | 0.831645 | 1.48E-55 | -1.69E-46 |
| MS.gene053384 | MS.gene35738 | 0.815658 | 8.26E-52 | -1.69E-46 |
| MS.gene053557 | MS.gene35738 | 0.832338 | 1.00E-55 | -1.69E-46 |
| MS.gene054123 | MS.gene35738 | 0.834978 | 2.19E-56 | -1.69E-46 |
| MS.gene054376 | MS.gene35738 | 0.841376 | 4.93E-58 | -1.69E-46 |
| MS.gene054802 | MS.gene35738 | 0.828981 | 6.64E-55 | -1.69E-46 |
| MS.gene054803 | MS.gene35738 | 0.830463 | 2.90E-55 | -1.69E-46 |
| MS.gene054804 | MS.gene35738 | 0.832526 | 8.99E-56 | -1.69E-46 |
| MS.gene055254 | MS.gene35738 | 0.885333 | 8.90E-72 | -1.69E-46 |
| MS.gene055277 | MS.gene35738 | 0.875225 | 3.64E-68 | -1.69E-46 |
| MS.gene055390 | MS.gene35738 | 0.804963 | 1.68E-49 | -1.69E-46 |
| MS.gene055397 | MS.gene35738 | 0.847444 | 1.15E-59 | -1.69E-46 |
| MS.gene055412 | MS.gene35738 | 0.831797 | 1.36E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene35738 | 0.839508 | 1.52E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene35738 | 0.817801 | 2.73E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene35738 | -0.812975 | 3.23E-51 | -1.69E-46 |
| MS.gene055499 | MS.gene35738 | 0.832846 | 7.49E-56 | -1.69E-46 |
| MS.gene055896 | MS.gene35738 | 0.817026 | 4.08E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene35738 | 0.811982 | 5.33E-51 | -1.69E-46 |
| MS.gene056314 | MS.gene35738 | 0.809736 | 1.63E-50 | -1.69E-46 |
| MS.gene056609 | MS.gene35738 | 0.899981 | 1.16E-77 | -1.69E-46 |
| MS.gene056612 | MS.gene35738 | 0.831815 | 1.35E-55 | -1.69E-46 |
| MS.gene056659 | MS.gene35738 | 0.812163 | 4.87E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene35738 | 0.824257 | 8.90E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene35738 | 0.833604 | 4.85E-56 | -1.69E-46 |
| MS.gene057123 | MS.gene35738 | 0.807188 | 5.71E-50 | -1.69E-46 |
| MS.gene057129 | MS.gene35738 | 0.832512 | 9.06E-56 | -1.69E-46 |
| MS.gene057295 | MS.gene35738 | 0.820996 | 5.10E-53 | -1.69E-46 |
| MS.gene05733 | MS.gene35738 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene05735 | MS.gene35738 | 0.805373 | 1.38E-49 | -1.69E-46 |
| MS.gene058082 | MS.gene35738 | 0.825015 | 5.90E-54 | -1.69E-46 |
| MS.gene058233 | MS.gene35738 | 0.807691 | 4.47E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene35738 | 0.810944 | 8.96E-51 | -1.69E-46 |
| MS.gene058365 | MS.gene35738 | 0.814346 | 1.61E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene35738 | 0.843119 | 1.70E-58 | -1.69E-46 |
| MS.gene058928 | MS.gene35738 | 0.839531 | 1.50E-57 | -1.69E-46 |
| MS.gene059326 | MS.gene35738 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene059597 | MS.gene35738 | 0.844998 | 5.34E-59 | -1.69E-46 |
| MS.gene05959 | MS.gene35738 | 0.839821 | 1.26E-57 | -1.69E-46 |
| MS.gene059676 | MS.gene35738 | 0.830644 | 2.61E-55 | -1.69E-46 |
| MS.gene059688 | MS.gene35738 | 0.804708 | 1.90E-49 | -1.69E-46 |
| MS.gene059692 | MS.gene35738 | 0.828122 | 1.07E-54 | -1.69E-46 |
| MS.gene059695 | MS.gene35738 | 0.817249 | 3.64E-52 | -1.69E-46 |
| MS.gene059708 | MS.gene35738 | 0.848143 | 7.39E-60 | -1.69E-46 |
| MS.gene059894 | MS.gene35738 | 0.902738 | 7.13E-79 | -1.69E-46 |
| MS.gene059960 | MS.gene35738 | 0.836853 | 7.33E-57 | -1.69E-46 |
| MS.gene059974 | MS.gene35738 | 0.815815 | 7.62E-52 | -1.69E-46 |
| MS.gene060005 | MS.gene35738 | 0.801173 | 1.02E-48 | -1.69E-46 |
| MS.gene06037 | MS.gene35738 | 0.821662 | 3.58E-53 | -1.69E-46 |
| MS.gene060407 | MS.gene35738 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene060496 | MS.gene35738 | 0.812614 | 3.88E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene35738 | 0.801196 | 1.01E-48 | -1.69E-46 |
| MS.gene060818 | MS.gene35738 | 0.838907 | 2.18E-57 | -1.69E-46 |
| MS.gene061041 | MS.gene35738 | 0.836484 | 9.11E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene35738 | 0.856958 | 2.26E-62 | -1.69E-46 |
| MS.gene061051 | MS.gene35738 | -0.830709 | 2.52E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene35738 | 0.818551 | 1.85E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene006258 | MS.gene35738 | PPI |
| MS.gene30963 | MS.gene35738 | PPI |
| MS.gene35738 | MS.gene34133 | PPI |
| MS.gene061150 | MS.gene35738 | PPI |
| MS.gene35738 | MS.gene052115 | PPI |
| MS.gene35738 | MS.gene007198 | PPI |
| MS.gene050301 | MS.gene35738 | PPI |
| MS.gene35738 | MS.gene49126 | PPI |
| MS.gene35738 | MS.gene30964 | PPI |
| MS.gene052116 | MS.gene35738 | PPI |
| MS.gene35738 | MS.gene31148 | PPI |
| MS.gene45498 | MS.gene35738 | PPI |
| MS.gene35738 | MS.gene24730 | PPI |
| MS.gene24695 | MS.gene35738 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35738.t1 | MTR_2g089795 | 98.611 | 288 | 3 | 1 | 1 | 288 | 1 | 287 | 0.0 | 583 |
| MS.gene35738.t1 | MTR_4g045980 | 76.307 | 287 | 65 | 3 | 1 | 284 | 1 | 287 | 3.18e-156 | 437 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35738.t1 | AT2G20890 | 67.260 | 281 | 84 | 4 | 3 | 282 | 5 | 278 | 1.01e-131 | 375 |
Find 57 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAATTCTGCTTCTAAAA+TGG | 0.196161 | 2.1:+12388690 | MS.gene35738:CDS |
| TCATTAAACCTGTATTGTTC+TGG | 0.299026 | 2.1:-12389806 | None:intergenic |
| CCCTTCAACTTCTCCTTCTC+TGG | 0.328222 | 2.1:-12390359 | None:intergenic |
| GAGCCACAGAAGGCTAATAA+TGG | 0.333096 | 2.1:+12391420 | MS.gene35738:CDS |
| GCTTCAAGTTCTGATATGTT+TGG | 0.340566 | 2.1:+12388625 | MS.gene35738:CDS |
| TATGATTCTGTATTTGCTCT+TGG | 0.366606 | 2.1:+12389686 | MS.gene35738:CDS |
| GCTACCTTGTCTAAAATTGT+TGG | 0.381994 | 2.1:-12390490 | None:intergenic |
| TGCAAAGAAGTTGGAAGATT+GGG | 0.391763 | 2.1:+12390297 | MS.gene35738:CDS |
| TTGGTCGTTTATATGCCTTT+AGG | 0.392956 | 2.1:-12389586 | None:intergenic |
| AGCATATATTAATGCATTGA+AGG | 0.411154 | 2.1:+12389778 | MS.gene35738:CDS |
| GAAGAAGAAAAGAGAAGAAA+GGG | 0.415256 | 2.1:+12391395 | MS.gene35738:CDS |
| AGAAGAAGAAAAGAGAAGAA+AGG | 0.421659 | 2.1:+12391394 | MS.gene35738:CDS |
| CAATGCATGTCTTCTGTCAC+AGG | 0.424463 | 2.1:+12388718 | MS.gene35738:CDS |
| AGCCACAGAAGGCTAATAAT+GGG | 0.431472 | 2.1:+12391421 | MS.gene35738:CDS |
| AGGAAGATCCAGAACAATAC+AGG | 0.432189 | 2.1:+12389798 | MS.gene35738:CDS |
| GAGCAAATACAGAATCATAT+TGG | 0.436295 | 2.1:-12389682 | None:intergenic |
| ATGCAAAGAAGTTGGAAGAT+TGG | 0.439138 | 2.1:+12390296 | MS.gene35738:CDS |
| CGACAAAAGAAGCGTTGATC+GGG | 0.440456 | 2.1:+12390824 | MS.gene35738:CDS |
| CCGCATGCTGCTTTCCAAGC+TGG | 0.440785 | 2.1:+12390860 | MS.gene35738:CDS |
| GTTCTGATATGTTTGGCATT+CGG | 0.442940 | 2.1:+12388632 | MS.gene35738:CDS |
| CAGAGTAGATGCAAAGAAGT+TGG | 0.448896 | 2.1:+12390288 | MS.gene35738:intron |
| TTTACCCACTCAATTTGTAA+TGG | 0.450196 | 2.1:-12391445 | None:intergenic |
| AAGAAGCGTTGATCGGGACT+TGG | 0.466265 | 2.1:+12390830 | MS.gene35738:CDS |
| TTGTTATAGATACTAGGAAT+TGG | 0.474724 | 2.1:-12389605 | None:intergenic |
| AACACCAACACAATGGTAAG+AGG | 0.483239 | 2.1:-12388662 | None:intergenic |
| TATCTATAACAATGTGCTGC+AGG | 0.485681 | 2.1:+12389616 | MS.gene35738:CDS |
| CATTGTGTTGGTGTTAGAGT+TGG | 0.486904 | 2.1:+12388670 | MS.gene35738:CDS |
| GAAGAAAAGAGAAGAAAGGG+TGG | 0.490264 | 2.1:+12391398 | MS.gene35738:CDS |
| GGCTCAAAACTCAACTTCAC+TGG | 0.505541 | 2.1:+12390324 | MS.gene35738:CDS |
| ATTAATATATGCTTTGAAGA+TGG | 0.505650 | 2.1:-12389768 | None:intergenic |
| CACTGTCTATGATAAACTCA+TGG | 0.515316 | 2.1:+12389715 | MS.gene35738:CDS |
| TCGACAAAAGAAGCGTTGAT+CGG | 0.519628 | 2.1:+12390823 | MS.gene35738:CDS |
| TTGCATTTGCCAACTCAAGA+AGG | 0.522030 | 2.1:-12390462 | None:intergenic |
| GATTCCTCTTACCATTGTGT+TGG | 0.524222 | 2.1:+12388658 | MS.gene35738:CDS |
| TGCAAAGGGAATTTATTGAC+AGG | 0.527306 | 2.1:+12390898 | MS.gene35738:CDS |
| TTCAAGCAAAAGAGCTGCAA+AGG | 0.532457 | 2.1:+12390883 | MS.gene35738:CDS |
| TCCAGAGAAGGAGAAGTTGA+AGG | 0.535017 | 2.1:+12390358 | MS.gene35738:CDS |
| GTCTATGATAAACTCATGGA+AGG | 0.537912 | 2.1:+12389719 | MS.gene35738:CDS |
| GACAAAGCTAAATTTCCTAA+AGG | 0.549896 | 2.1:+12389571 | MS.gene35738:CDS |
| TATAGTCGTTTCTTTGCAGT+AGG | 0.552503 | 2.1:+12390430 | MS.gene35738:CDS |
| GCCCCATTATTAGCCTTCTG+TGG | 0.553177 | 2.1:-12391423 | None:intergenic |
| CCAGAGAAGGAGAAGTTGAA+GGG | 0.554923 | 2.1:+12390359 | MS.gene35738:CDS |
| TAGCTTTGTCTCAGAAACGC+TGG | 0.563749 | 2.1:-12389558 | None:intergenic |
| AGCTTTGTCTCAGAAACGCT+GGG | 0.565578 | 2.1:-12389557 | None:intergenic |
| AGAAAGGGTGGAGCCACAGA+AGG | 0.570202 | 2.1:+12391410 | MS.gene35738:CDS |
| TCAAGCAAAAGAGCTGCAAA+GGG | 0.580848 | 2.1:+12390884 | MS.gene35738:CDS |
| GAAGTTGGAAGATTGGGCTA+AGG | 0.605561 | 2.1:+12390303 | MS.gene35738:CDS |
| AGCACATTGTTATAGATACT+AGG | 0.605595 | 2.1:-12389611 | None:intergenic |
| CAGAGAAGGAGAAGTTGAAG+GGG | 0.608753 | 2.1:+12390360 | MS.gene35738:CDS |
| GGAAGGGTATTCTAGTGAAG+AGG | 0.630073 | 2.1:+12389736 | MS.gene35738:CDS |
| GAAACGAGTAGAAGACAAAG+TGG | 0.635727 | 2.1:-12388599 | None:intergenic |
| ACATATCAGAACTTGAAGCA+AGG | 0.636756 | 2.1:-12388621 | None:intergenic |
| GTCAACATAACAGCTTTGTG+CGG | 0.651736 | 2.1:+12390791 | MS.gene35738:intron |
| CAACTCTAACACCAACACAA+TGG | 0.658302 | 2.1:-12388669 | None:intergenic |
| TCTATGATAAACTCATGGAA+GGG | 0.662278 | 2.1:+12389720 | MS.gene35738:CDS |
| GCCACAGAAGGCTAATAATG+GGG | 0.663091 | 2.1:+12391422 | MS.gene35738:CDS |
| CCAGCTTGGAAAGCAGCATG+CGG | 0.691470 | 2.1:-12390860 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAATAATAATTAATGA+CGG | + | chr2.1:12389918-12389937 | MS.gene35738:intron | 10.0% |
| !! | AATAAAGAACAATAAAGCAA+AGG | - | chr2.1:12389844-12389863 | None:intergenic | 20.0% |
| !! | GATTTATGATAGTTAATCTT+TGG | + | chr2.1:12390767-12390786 | MS.gene35738:intron | 20.0% |
| !!! | ATATGTTTTGGTTATTTTAG+CGG | + | chr2.1:12389007-12389026 | MS.gene35738:intron | 20.0% |
| !!! | ATTAATATATGCTTTGAAGA+TGG | - | chr2.1:12389771-12389790 | None:intergenic | 20.0% |
| !!! | TTTTTCAATTATTGAGTCAA+AGG | - | chr2.1:12389892-12389911 | None:intergenic | 20.0% |
| ! | AATAGTTAGTTAAGTTACAC+TGG | + | chr2.1:12388841-12388860 | MS.gene35738:intron | 25.0% |
| ! | ACTAAGCAAAAACATATACA+AGG | - | chr2.1:12390178-12390197 | None:intergenic | 25.0% |
| ! | AGCATATATTAATGCATTGA+AGG | + | chr2.1:12389778-12389797 | MS.gene35738:CDS | 25.0% |
| ! | ATCACTTCAAACTACTTTAT+TGG | - | chr2.1:12390651-12390670 | None:intergenic | 25.0% |
| ! | CATCATGCATGATTTATAAT+TGG | + | chr2.1:12390528-12390547 | MS.gene35738:intron | 25.0% |
| ! | TCTCAATTATAAAGACAAGA+AGG | - | chr2.1:12389139-12389158 | None:intergenic | 25.0% |
| ! | TGACAAGAAAATTTATCTGA+AGG | + | chr2.1:12390209-12390228 | MS.gene35738:intron | 25.0% |
| ! | TTATATTTGCATGCATGATT+AGG | + | chr2.1:12388932-12388951 | MS.gene35738:intron | 25.0% |
| ! | TTCTTCAAACTACTTATTGT+GGG | + | chr2.1:12388894-12388913 | MS.gene35738:intron | 25.0% |
| ! | TTGACAAAAACATGGAAAAA+CGG | + | chr2.1:12389181-12389200 | MS.gene35738:intron | 25.0% |
| ! | TTGTTATAGATACTAGGAAT+TGG | - | chr2.1:12389608-12389627 | None:intergenic | 25.0% |
| ! | TTTCTTCAAACTACTTATTG+TGG | + | chr2.1:12388893-12388912 | MS.gene35738:intron | 25.0% |
| !! | AGTAGTTTGAAGTGATTAAA+TGG | + | chr2.1:12390655-12390674 | MS.gene35738:intron | 25.0% |
| !! | CAATAGTTTTCTATTCTTTC+CGG | - | chr2.1:12390149-12390168 | None:intergenic | 25.0% |
| !! | TATGATGCTAACTTAGATTT+TGG | - | chr2.1:12390116-12390135 | None:intergenic | 25.0% |
| !!! | ATATGTTTTTTTTTACCCCA+GGG | + | chr2.1:12391371-12391390 | MS.gene35738:intron | 25.0% |
| !!! | ATTAGACTTTAACTTGTGAA+TGG | - | chr2.1:12391239-12391258 | None:intergenic | 25.0% |
| !!! | CCAAATCAAGTTTTAGATAA+GGG | + | chr2.1:12388764-12388783 | MS.gene35738:intron | 25.0% |
| !!! | GGTTTGTGTTTTTGTTAATT+TGG | + | chr2.1:12388739-12388758 | MS.gene35738:intron | 25.0% |
| !!! | TATATGTTTTTTTTTACCCC+AGG | + | chr2.1:12391370-12391389 | MS.gene35738:intron | 25.0% |
| !!! | TCCAAATCAAGTTTTAGATA+AGG | + | chr2.1:12388763-12388782 | MS.gene35738:intron | 25.0% |
| !!! | TTTGAGTGTGTTTGATTTTA+TGG | + | chr2.1:12391039-12391058 | MS.gene35738:intron | 25.0% |
| AACCAAAACATATGCCAAAA+AGG | - | chr2.1:12389000-12389019 | None:intergenic | 30.0% | |
| ACACGTACTGCAAAAAAAAA+AGG | + | chr2.1:12389458-12389477 | MS.gene35738:intron | 30.0% | |
| ACTCAGATTTATAGAGTAGA+TGG | - | chr2.1:12391213-12391232 | None:intergenic | 30.0% | |
| AGAAGAAGAAAAGAGAAGAA+AGG | + | chr2.1:12391394-12391413 | MS.gene35738:CDS | 30.0% | |
| AGCACATTGTTATAGATACT+AGG | - | chr2.1:12389614-12389633 | None:intergenic | 30.0% | |
| ATGAACCTTATTATCTTAGC+TGG | + | chr2.1:12389506-12389525 | MS.gene35738:intron | 30.0% | |
| CTACTTTATTGGAACTTCTA+AGG | - | chr2.1:12390640-12390659 | None:intergenic | 30.0% | |
| GAAGAAGAAAAGAGAAGAAA+GGG | + | chr2.1:12391395-12391414 | MS.gene35738:CDS | 30.0% | |
| GACAAAGCTAAATTTCCTAA+AGG | + | chr2.1:12389571-12389590 | MS.gene35738:CDS | 30.0% | |
| GAGCAAATACAGAATCATAT+TGG | - | chr2.1:12389685-12389704 | None:intergenic | 30.0% | |
| GATTTACAATTACAGCTTGA+TGG | + | chr2.1:12391320-12391339 | MS.gene35738:intron | 30.0% | |
| TACAGTCTTTCGAAAATAGA+AGG | - | chr2.1:12389294-12389313 | None:intergenic | 30.0% | |
| TATAGAGTAGATGGAATATC+AGG | - | chr2.1:12391204-12391223 | None:intergenic | 30.0% | |
| TATGATTCTGTATTTGCTCT+TGG | + | chr2.1:12389686-12389705 | MS.gene35738:CDS | 30.0% | |
| TCATTAAACCTGTATTGTTC+TGG | - | chr2.1:12389809-12389828 | None:intergenic | 30.0% | |
| TCTATGATAAACTCATGGAA+GGG | + | chr2.1:12389720-12389739 | MS.gene35738:CDS | 30.0% | |
| TTATTATCTTAGCTGGTCAT+GGG | + | chr2.1:12389513-12389532 | MS.gene35738:intron | 30.0% | |
| TTTGAGCAGTTTATAAAGAC+TGG | - | chr2.1:12389069-12389088 | None:intergenic | 30.0% | |
| ! | AGAACCAACAATTTTAGACA+AGG | + | chr2.1:12390486-12390505 | MS.gene35738:CDS | 30.0% |
| ! | CCCTTATCTAAAACTTGATT+TGG | - | chr2.1:12388767-12388786 | None:intergenic | 30.0% |
| ! | TGGAAATTCTGCTTCTAAAA+TGG | + | chr2.1:12388690-12388709 | MS.gene35738:CDS | 30.0% |
| !! | ATCCTTTTTGGCATATGTTT+TGG | + | chr2.1:12388995-12389014 | MS.gene35738:intron | 30.0% |
| !! | TAGTTACACTAGTTCTACTA+AGG | + | chr2.1:12388865-12388884 | MS.gene35738:intron | 30.0% |
| !!! | AATCAAGTTTTAGATAAGGG+AGG | + | chr2.1:12388767-12388786 | MS.gene35738:intron | 30.0% |
| AAAAAGGATCCCCAAAGATT+AGG | - | chr2.1:12388984-12389003 | None:intergenic | 35.0% | |
| AAAAGGATCCCCAAAGATTA+GGG | - | chr2.1:12388983-12389002 | None:intergenic | 35.0% | |
| AAGGATATTGCAAAAAGAGC+AGG | + | chr2.1:12390388-12390407 | MS.gene35738:CDS | 35.0% | |
| ACATATCAGAACTTGAAGCA+AGG | - | chr2.1:12388624-12388643 | None:intergenic | 35.0% | |
| ACTCAGATTTATGGAGTAGA+TGG | - | chr2.1:12391264-12391283 | None:intergenic | 35.0% | |
| AGCATCATATTATTCCCAAC+CGG | + | chr2.1:12390127-12390146 | MS.gene35738:intron | 35.0% | |
| ATCGTATCTACCCTAATCTT+TGG | + | chr2.1:12388970-12388989 | MS.gene35738:intron | 35.0% | |
| ATGCAAAGAAGTTGGAAGAT+TGG | + | chr2.1:12390296-12390315 | MS.gene35738:CDS | 35.0% | |
| CACTGTCTATGATAAACTCA+TGG | + | chr2.1:12389715-12389734 | MS.gene35738:CDS | 35.0% | |
| CATGACCAGCTAAGATAATA+AGG | - | chr2.1:12389514-12389533 | None:intergenic | 35.0% | |
| CATGATGCCTTGAATGAATT+GGG | - | chr2.1:12390515-12390534 | None:intergenic | 35.0% | |
| CTTATTATCTTAGCTGGTCA+TGG | + | chr2.1:12389512-12389531 | MS.gene35738:intron | 35.0% | |
| GTCTATGATAAACTCATGGA+AGG | + | chr2.1:12389719-12389738 | MS.gene35738:CDS | 35.0% | |
| GTGTCAGTTTGACAAAAACA+TGG | + | chr2.1:12389173-12389192 | MS.gene35738:intron | 35.0% | |
| GTTCTGATATGTTTGGCATT+CGG | + | chr2.1:12388632-12388651 | MS.gene35738:CDS | 35.0% | |
| TAAACTGCTCAAAACTCCAA+TGG | + | chr2.1:12389076-12389095 | MS.gene35738:intron | 35.0% | |
| TATAGTCGTTTCTTTGCAGT+AGG | + | chr2.1:12390430-12390449 | MS.gene35738:CDS | 35.0% | |
| TATCTATAACAATGTGCTGC+AGG | + | chr2.1:12389616-12389635 | MS.gene35738:CDS | 35.0% | |
| TCGTATCTACCCTAATCTTT+GGG | + | chr2.1:12388971-12388990 | MS.gene35738:intron | 35.0% | |
| TGCAAAGAAGTTGGAAGATT+GGG | + | chr2.1:12390297-12390316 | MS.gene35738:CDS | 35.0% | |
| TGCAAAGGGAATTTATTGAC+AGG | + | chr2.1:12390898-12390917 | MS.gene35738:CDS | 35.0% | |
| TTGGTCGTTTATATGCCTTT+AGG | - | chr2.1:12389589-12389608 | None:intergenic | 35.0% | |
| ! | AGTTTTCTATTCTTTCCGGT+TGG | - | chr2.1:12390145-12390164 | None:intergenic | 35.0% |
| ! | GACTGGTTCTTGAAAATCAT+TGG | - | chr2.1:12389332-12389351 | None:intergenic | 35.0% |
| ! | GCTACCTTGTCTAAAATTGT+TGG | - | chr2.1:12390493-12390512 | None:intergenic | 35.0% |
| ! | GCTTCAAGTTCTGATATGTT+TGG | + | chr2.1:12388625-12388644 | MS.gene35738:CDS | 35.0% |
| ! | GTTTTCTATTCTTTCCGGTT+GGG | - | chr2.1:12390144-12390163 | None:intergenic | 35.0% |
| !! | AGATTTTGGCAAACAAACTC+TGG | - | chr2.1:12390102-12390121 | None:intergenic | 35.0% |
| !! | TAATCTTTGGGGATCCTTTT+TGG | + | chr2.1:12388983-12389002 | MS.gene35738:intron | 35.0% |
| AACACCAACACAATGGTAAG+AGG | - | chr2.1:12388665-12388684 | None:intergenic | 40.0% | |
| AAGGTAGCCCAATTCATTCA+AGG | + | chr2.1:12390505-12390524 | MS.gene35738:intron | 40.0% | |
| AAGTCATCGTCTGATTGACA+AGG | + | chr2.1:12389258-12389277 | MS.gene35738:intron | 40.0% | |
| ACAGAGAGTAGAACAACTGA+AGG | - | chr2.1:12390946-12390965 | None:intergenic | 40.0% | |
| AGCCACAGAAGGCTAATAAT+GGG | + | chr2.1:12391421-12391440 | MS.gene35738:CDS | 40.0% | |
| AGGAAGATCCAGAACAATAC+AGG | + | chr2.1:12389798-12389817 | MS.gene35738:CDS | 40.0% | |
| AGTTGGATCACATTGATAGG+TGG | + | chr2.1:12389032-12389051 | MS.gene35738:intron | 40.0% | |
| CAACTCTAACACCAACACAA+TGG | - | chr2.1:12388672-12388691 | None:intergenic | 40.0% | |
| CAGAGAGTAGAACAACTGAA+GGG | - | chr2.1:12390945-12390964 | None:intergenic | 40.0% | |
| CAGAGTAGATGCAAAGAAGT+TGG | + | chr2.1:12390288-12390307 | MS.gene35738:intron | 40.0% | |
| CGTATCTACCCTAATCTTTG+GGG | + | chr2.1:12388972-12388991 | MS.gene35738:intron | 40.0% | |
| CTTTGCATCTACTCTGTAGA+GGG | - | chr2.1:12390284-12390303 | None:intergenic | 40.0% | |
| GAAACGAGTAGAAGACAAAG+TGG | - | chr2.1:12388602-12388621 | None:intergenic | 40.0% | |
| GAAGAAAAGAGAAGAAAGGG+TGG | + | chr2.1:12391398-12391417 | MS.gene35738:CDS | 40.0% | |
| GAATGGCACACTCAGATTTA+TGG | - | chr2.1:12391273-12391292 | None:intergenic | 40.0% | |
| GATTCCTCTTACCATTGTGT+TGG | + | chr2.1:12388658-12388677 | MS.gene35738:CDS | 40.0% | |
| GCAAAAAGAGCAGGAGAAAA+GGG | + | chr2.1:12390397-12390416 | MS.gene35738:CDS | 40.0% | |
| GCATCGTTATGAATGTTCGT+AGG | + | chr2.1:12390745-12390764 | MS.gene35738:intron | 40.0% | |
| GCATGATGCCTTGAATGAAT+TGG | - | chr2.1:12390516-12390535 | None:intergenic | 40.0% | |
| TCAAGCAAAAGAGCTGCAAA+GGG | + | chr2.1:12390884-12390903 | MS.gene35738:CDS | 40.0% | |
| TCTTTGCATCTACTCTGTAG+AGG | - | chr2.1:12390285-12390304 | None:intergenic | 40.0% | |
| TGCAAAAAGAGCAGGAGAAA+AGG | + | chr2.1:12390396-12390415 | MS.gene35738:CDS | 40.0% | |
| TGTTCTACTCTCTGTCATCA+TGG | + | chr2.1:12390951-12390970 | MS.gene35738:intron | 40.0% | |
| TTCAAGCAAAAGAGCTGCAA+AGG | + | chr2.1:12390883-12390902 | MS.gene35738:CDS | 40.0% | |
| TTGCATTTGCCAACTCAAGA+AGG | - | chr2.1:12390465-12390484 | None:intergenic | 40.0% | |
| TTTGCAAAACACAGGCATGA+GGG | + | chr2.1:12389386-12389405 | MS.gene35738:intron | 40.0% | |
| ! | CCTGTGTTTTGCAAACTCTA+CGG | - | chr2.1:12389381-12389400 | None:intergenic | 40.0% |
| ! | GCAAACTCTACGGTCTATTT+TGG | - | chr2.1:12389371-12389390 | None:intergenic | 40.0% |
| ! | GTCAACATAACAGCTTTGTG+CGG | + | chr2.1:12390791-12390810 | MS.gene35738:intron | 40.0% |
| ! | GTGAGTTGGATCACATTGAT+AGG | + | chr2.1:12389029-12389048 | MS.gene35738:intron | 40.0% |
| ! | GTTGAGTTTTCATCCAGAGA+AGG | + | chr2.1:12390346-12390365 | MS.gene35738:CDS | 40.0% |
| ! | TCTCTTTTCTTCTTCTCCCT+GGG | - | chr2.1:12391390-12391409 | None:intergenic | 40.0% |
| ! | TTCTCTTTTCTTCTTCTCCC+TGG | - | chr2.1:12391391-12391410 | None:intergenic | 40.0% |
| !! | AGAAGTTGAAGGGGTTTTGA+AGG | + | chr2.1:12390369-12390388 | MS.gene35738:CDS | 40.0% |
| !! | CATTGTGTTGGTGTTAGAGT+TGG | + | chr2.1:12388670-12388689 | MS.gene35738:CDS | 40.0% |
| !! | GATTTTCAAGAACCAGTCCA+TGG | + | chr2.1:12389334-12389353 | MS.gene35738:intron | 40.0% |
| !! | TCGACAAAAGAAGCGTTGAT+CGG | + | chr2.1:12390823-12390842 | MS.gene35738:CDS | 40.0% |
| !! | TCTTTTTCGCCTTCTTGAGT+TGG | + | chr2.1:12390453-12390472 | MS.gene35738:CDS | 40.0% |
| !!! | ACTCTACGGTCTATTTTGGT+AGG | - | chr2.1:12389367-12389386 | None:intergenic | 40.0% |
| !!! | TGGTTATTTTAGCGGTGAGT+TGG | + | chr2.1:12389015-12389034 | MS.gene35738:intron | 40.0% |
| !!! | TTTTCTCTGTGAGCATTGAG+TGG | - | chr2.1:12388578-12388597 | None:intergenic | 40.0% |
| ACCGAGAGCTTCTACTTTAG+AGG | - | chr2.1:12389116-12389135 | None:intergenic | 45.0% | |
| ACTATGTCCAGCAGAGGTTT+GGG | + | chr2.1:12389961-12389980 | MS.gene35738:intron | 45.0% | |
| CAATGCATGTCTTCTGTCAC+AGG | + | chr2.1:12388718-12388737 | MS.gene35738:CDS | 45.0% | |
| CAGAGAAGGAGAAGTTGAAG+GGG | + | chr2.1:12390360-12390379 | MS.gene35738:CDS | 45.0% | |
| CATTGATAGGTGGTTCACGA+TGG | + | chr2.1:12389042-12389061 | MS.gene35738:intron | 45.0% | |
| CCAGAGAAGGAGAAGTTGAA+GGG | + | chr2.1:12390359-12390378 | MS.gene35738:CDS | 45.0% | |
| CCGAGAGCTTCTACTTTAGA+GGG | - | chr2.1:12389115-12389134 | None:intergenic | 45.0% | |
| CCGTAGAGTTTGCAAAACAC+AGG | + | chr2.1:12389378-12389397 | MS.gene35738:intron | 45.0% | |
| GAAGTTGGAAGATTGGGCTA+AGG | + | chr2.1:12390303-12390322 | MS.gene35738:CDS | 45.0% | |
| GAGCCACAGAAGGCTAATAA+TGG | + | chr2.1:12391420-12391439 | MS.gene35738:CDS | 45.0% | |
| GCCACAGAAGGCTAATAATG+GGG | + | chr2.1:12391422-12391441 | MS.gene35738:CDS | 45.0% | |
| GGCTCAAAACTCAACTTCAC+TGG | + | chr2.1:12390324-12390343 | MS.gene35738:CDS | 45.0% | |
| GGCTGATTGCATGGAATCAA+GGG | - | chr2.1:12390003-12390022 | None:intergenic | 45.0% | |
| GTTTGCAAAACACAGGCATG+AGG | + | chr2.1:12389385-12389404 | MS.gene35738:intron | 45.0% | |
| TCCAGAGAAGGAGAAGTTGA+AGG | + | chr2.1:12390358-12390377 | MS.gene35738:CDS | 45.0% | |
| TGGCTGATTGCATGGAATCA+AGG | - | chr2.1:12390004-12390023 | None:intergenic | 45.0% | |
| TTGATCAGATGGCCTAGAAG+TGG | - | chr2.1:12390024-12390043 | None:intergenic | 45.0% | |
| TTGCTACTGAGAGCAATCGT+AGG | - | chr2.1:12390702-12390721 | None:intergenic | 45.0% | |
| ! | AGCTTTGTCTCAGAAACGCT+GGG | - | chr2.1:12389560-12389579 | None:intergenic | 45.0% |
| ! | CTCTTTTCTTCTTCTCCCTG+GGG | - | chr2.1:12391389-12391408 | None:intergenic | 45.0% |
| ! | CTCTTTTGCTTGAACCAGCT+TGG | - | chr2.1:12390877-12390896 | None:intergenic | 45.0% |
| ! | TTTTGGTAGGTGGTCTACCA+TGG | - | chr2.1:12389354-12389373 | None:intergenic | 45.0% |
| !! | CCCTCTAAAGTAGAAGCTCT+CGG | + | chr2.1:12389112-12389131 | MS.gene35738:intron | 45.0% |
| !! | CGACAAAAGAAGCGTTGATC+GGG | + | chr2.1:12390824-12390843 | MS.gene35738:CDS | 45.0% |
| !! | GGAAGGGTATTCTAGTGAAG+AGG | + | chr2.1:12389736-12389755 | MS.gene35738:CDS | 45.0% |
| !! | TAGCTTTGTCTCAGAAACGC+TGG | - | chr2.1:12389561-12389580 | None:intergenic | 45.0% |
| !!! | CTACGGTCTATTTTGGTAGG+TGG | - | chr2.1:12389364-12389383 | None:intergenic | 45.0% |
| ATGCAGCAGTCAACCACATC+AGG | - | chr2.1:12390059-12390078 | None:intergenic | 50.0% | |
| CCATGCAATCAGCCACTTCT+AGG | + | chr2.1:12390009-12390028 | MS.gene35738:intron | 50.0% | |
| CCCTTCAACTTCTCCTTCTC+TGG | - | chr2.1:12390362-12390381 | None:intergenic | 50.0% | |
| CCTAGAAGTGGCTGATTGCA+TGG | - | chr2.1:12390012-12390031 | None:intergenic | 50.0% | |
| CTACTGAGAGCAATCGTAGG+AGG | - | chr2.1:12390699-12390718 | None:intergenic | 50.0% | |
| CTGAAGACTATGTCCAGCAG+AGG | + | chr2.1:12389955-12389974 | MS.gene35738:intron | 50.0% | |
| CTGCTGGACATAGTCTTCAG+TGG | - | chr2.1:12389955-12389974 | None:intergenic | 50.0% | |
| CTGTTGCGGTCTTGATCAGA+TGG | - | chr2.1:12390035-12390054 | None:intergenic | 50.0% | |
| GACTATGTCCAGCAGAGGTT+TGG | + | chr2.1:12389960-12389979 | MS.gene35738:intron | 50.0% | |
| TCGTAGGAGGCAAACGTATC+AGG | - | chr2.1:12390686-12390705 | None:intergenic | 50.0% | |
| TGCAGCAGTCAACCACATCA+GGG | - | chr2.1:12390058-12390077 | None:intergenic | 50.0% | |
| ! | ACAGGCATGAGGGTATGACA+TGG | + | chr2.1:12389396-12389415 | MS.gene35738:intron | 50.0% |
| ! | GCATGAGGGTATGACATGGT+GGG | + | chr2.1:12389400-12389419 | MS.gene35738:intron | 50.0% |
| !! | AAGAAGCGTTGATCGGGACT+TGG | + | chr2.1:12390830-12390849 | MS.gene35738:CDS | 50.0% |
| !! | GCCCCATTATTAGCCTTCTG+TGG | - | chr2.1:12391426-12391445 | None:intergenic | 50.0% |
| AGAAAGGGTGGAGCCACAGA+AGG | + | chr2.1:12391410-12391429 | MS.gene35738:CDS | 55.0% | |
| CAACCACATCAGGGCTGTTG+CGG | - | chr2.1:12390049-12390068 | None:intergenic | 55.0% | |
| CACACAACCCAAACCTCTGC+TGG | - | chr2.1:12389971-12389990 | None:intergenic | 55.0% | |
| CCAGCTTGGAAAGCAGCATG+CGG | - | chr2.1:12390863-12390882 | None:intergenic | 55.0% | |
| GTAGGTGGTCTACCATGGAC+TGG | - | chr2.1:12389349-12389368 | None:intergenic | 55.0% | |
| ! | GGCATGAGGGTATGACATGG+TGG | + | chr2.1:12389399-12389418 | MS.gene35738:intron | 55.0% |
| ! | GGGATGTCGTCGATTGCCAT+TGG | - | chr2.1:12389095-12389114 | None:intergenic | 55.0% |
| AGACCGCAACAGCCCTGATG+TGG | + | chr2.1:12390043-12390062 | MS.gene35738:intron | 60.0% | |
| !! | CCGCATGCTGCTTTCCAAGC+TGG | + | chr2.1:12390860-12390879 | MS.gene35738:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 12388541 | 12391458 | 12388541 | ID=MS.gene35738 |
| chr2.1 | mRNA | 12388541 | 12391458 | 12388541 | ID=MS.gene35738.t1;Parent=MS.gene35738 |
| chr2.1 | exon | 12388541 | 12388739 | 12388541 | ID=MS.gene35738.t1.exon1;Parent=MS.gene35738.t1 |
| chr2.1 | CDS | 12388541 | 12388739 | 12388541 | ID=cds.MS.gene35738.t1;Parent=MS.gene35738.t1 |
| chr2.1 | exon | 12389552 | 12389819 | 12389552 | ID=MS.gene35738.t1.exon2;Parent=MS.gene35738.t1 |
| chr2.1 | CDS | 12389552 | 12389819 | 12389552 | ID=cds.MS.gene35738.t1;Parent=MS.gene35738.t1 |
| chr2.1 | exon | 12390291 | 12390507 | 12390291 | ID=MS.gene35738.t1.exon3;Parent=MS.gene35738.t1 |
| chr2.1 | CDS | 12390291 | 12390507 | 12390291 | ID=cds.MS.gene35738.t1;Parent=MS.gene35738.t1 |
| chr2.1 | exon | 12390804 | 12390919 | 12390804 | ID=MS.gene35738.t1.exon4;Parent=MS.gene35738.t1 |
| chr2.1 | CDS | 12390804 | 12390919 | 12390804 | ID=cds.MS.gene35738.t1;Parent=MS.gene35738.t1 |
| chr2.1 | exon | 12391392 | 12391458 | 12391392 | ID=MS.gene35738.t1.exon5;Parent=MS.gene35738.t1 |
| chr2.1 | CDS | 12391392 | 12391458 | 12391392 | ID=cds.MS.gene35738.t1;Parent=MS.gene35738.t1 |
| Gene Sequence |
| Protein sequence |
