Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80180.t1 | XP_003603289.1 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 9.60E-91 | 342.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80180.t1 | Q9SK27 | 55.0 | 169 | 73 | 2 | 5 | 172 | 9 | 175 | 8.9e-45 | 181.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80180.t1 | G7J9U0 | 97.8 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 6.9e-91 | 342.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049133 | MS.gene80180 | 0.8062 | 9.23E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene80180 | 0.827452 | 1.55E-54 | -1.69E-46 |
| MS.gene049596 | MS.gene80180 | 0.845648 | 3.56E-59 | -1.69E-46 |
| MS.gene049622 | MS.gene80180 | 0.844299 | 8.24E-59 | -1.69E-46 |
| MS.gene04972 | MS.gene80180 | 0.806808 | 6.87E-50 | -1.69E-46 |
| MS.gene04985 | MS.gene80180 | 0.81366 | 2.29E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene80180 | 0.869731 | 2.48E-66 | -1.69E-46 |
| MS.gene050071 | MS.gene80180 | 0.810288 | 1.24E-50 | -1.69E-46 |
| MS.gene050297 | MS.gene80180 | 0.916702 | 1.30E-85 | -1.69E-46 |
| MS.gene050310 | MS.gene80180 | 0.824218 | 9.09E-54 | -1.69E-46 |
| MS.gene050648 | MS.gene80180 | 0.841186 | 5.54E-58 | -1.69E-46 |
| MS.gene05124 | MS.gene80180 | 0.836458 | 9.25E-57 | -1.69E-46 |
| MS.gene051263 | MS.gene80180 | 0.860056 | 2.69E-63 | -1.69E-46 |
| MS.gene051478 | MS.gene80180 | 0.86708 | 1.78E-65 | -1.69E-46 |
| MS.gene051629 | MS.gene80180 | 0.823059 | 1.70E-53 | -1.69E-46 |
| MS.gene051648 | MS.gene80180 | 0.814628 | 1.40E-51 | -1.69E-46 |
| MS.gene051698 | MS.gene80180 | 0.80644 | 8.22E-50 | -1.69E-46 |
| MS.gene051742 | MS.gene80180 | 0.807566 | 4.75E-50 | -1.69E-46 |
| MS.gene051955 | MS.gene80180 | 0.822022 | 2.96E-53 | -1.69E-46 |
| MS.gene052143 | MS.gene80180 | 0.87944 | 1.24E-69 | -1.69E-46 |
| MS.gene052308 | MS.gene80180 | 0.81502 | 1.14E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene80180 | 0.887218 | 1.73E-72 | -1.69E-46 |
| MS.gene053173 | MS.gene80180 | 0.838688 | 2.48E-57 | -1.69E-46 |
| MS.gene053416 | MS.gene80180 | 0.858332 | 8.86E-63 | -1.69E-46 |
| MS.gene053417 | MS.gene80180 | 0.863567 | 2.27E-64 | -1.69E-46 |
| MS.gene05369 | MS.gene80180 | 0.802578 | 5.25E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene80180 | 0.833382 | 5.51E-56 | -1.69E-46 |
| MS.gene054643 | MS.gene80180 | 0.889453 | 2.39E-73 | -1.69E-46 |
| MS.gene054999 | MS.gene80180 | 0.811094 | 8.32E-51 | -1.69E-46 |
| MS.gene055251 | MS.gene80180 | 0.801184 | 1.01E-48 | -1.69E-46 |
| MS.gene055308 | MS.gene80180 | 0.814759 | 1.31E-51 | -1.69E-46 |
| MS.gene055578 | MS.gene80180 | 0.811638 | 6.33E-51 | -1.69E-46 |
| MS.gene055764 | MS.gene80180 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene055957 | MS.gene80180 | 0.87733 | 6.85E-69 | -1.69E-46 |
| MS.gene056041 | MS.gene80180 | 0.862267 | 5.72E-64 | -1.69E-46 |
| MS.gene056042 | MS.gene80180 | 0.834657 | 2.64E-56 | -1.69E-46 |
| MS.gene056169 | MS.gene80180 | 0.800942 | 1.14E-48 | -1.69E-46 |
| MS.gene056526 | MS.gene80180 | 0.837491 | 5.04E-57 | -1.69E-46 |
| MS.gene057004 | MS.gene80180 | 0.80079 | 1.22E-48 | -1.69E-46 |
| MS.gene057458 | MS.gene80180 | 0.821215 | 4.55E-53 | -1.69E-46 |
| MS.gene057483 | MS.gene80180 | 0.850526 | 1.60E-60 | -1.69E-46 |
| MS.gene058196 | MS.gene80180 | 0.825396 | 4.80E-54 | -1.69E-46 |
| MS.gene058197 | MS.gene80180 | 0.840922 | 6.50E-58 | -1.69E-46 |
| MS.gene058198 | MS.gene80180 | 0.838215 | 3.28E-57 | -1.69E-46 |
| MS.gene058818 | MS.gene80180 | 0.86725 | 1.57E-65 | -1.69E-46 |
| MS.gene058844 | MS.gene80180 | 0.840399 | 8.90E-58 | -1.69E-46 |
| MS.gene059300 | MS.gene80180 | 0.871552 | 6.27E-67 | -1.69E-46 |
| MS.gene059553 | MS.gene80180 | 0.801306 | 9.58E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene80180 | 0.853206 | 2.78E-61 | -1.69E-46 |
| MS.gene060565 | MS.gene80180 | 0.856126 | 3.97E-62 | -1.69E-46 |
| MS.gene06057 | MS.gene80180 | 0.901599 | 2.28E-78 | -1.69E-46 |
| MS.gene06093 | MS.gene80180 | 0.811719 | 6.08E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene80180 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene061260 | MS.gene80180 | 0.871811 | 5.14E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene80180 | MS.gene031754 | PPI |
| MS.gene006553 | MS.gene80180 | PPI |
| MS.gene032997 | MS.gene80180 | PPI |
| MS.gene80180 | MS.gene038783 | PPI |
| MS.gene80180 | MS.gene065888 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80180.t1 | MTR_3g105930 | 97.778 | 180 | 4 | 0 | 1 | 180 | 1 | 180 | 1.68e-128 | 358 |
| MS.gene80180.t1 | MTR_7g090170 | 87.273 | 165 | 4 | 1 | 1 | 165 | 1 | 148 | 2.46e-99 | 283 |
| MS.gene80180.t1 | MTR_1g014120 | 66.897 | 145 | 44 | 2 | 7 | 147 | 4 | 148 | 1.09e-66 | 202 |
| MS.gene80180.t1 | MTR_8g463180 | 49.630 | 135 | 59 | 4 | 12 | 142 | 5 | 134 | 2.41e-37 | 130 |
| MS.gene80180.t1 | MTR_4g081100 | 49.587 | 121 | 60 | 1 | 11 | 131 | 16 | 135 | 3.72e-36 | 125 |
| MS.gene80180.t1 | MTR_2g079030 | 47.917 | 144 | 69 | 3 | 12 | 152 | 10 | 150 | 7.31e-35 | 128 |
| MS.gene80180.t1 | MTR_4g077787 | 39.459 | 185 | 93 | 6 | 1 | 176 | 1 | 175 | 2.27e-34 | 119 |
| MS.gene80180.t1 | MTR_2g101300 | 44.928 | 138 | 68 | 5 | 23 | 157 | 23 | 155 | 3.99e-34 | 119 |
| MS.gene80180.t1 | MTR_2g090580 | 43.210 | 162 | 77 | 5 | 10 | 159 | 2 | 160 | 8.30e-34 | 119 |
| MS.gene80180.t1 | MTR_4g111640 | 38.122 | 181 | 92 | 7 | 8 | 179 | 7 | 176 | 6.73e-33 | 116 |
| MS.gene80180.t1 | MTR_6g022170 | 50.467 | 107 | 49 | 3 | 23 | 128 | 30 | 133 | 2.03e-30 | 109 |
| MS.gene80180.t1 | MTR_2g083250 | 50.926 | 108 | 50 | 3 | 24 | 129 | 23 | 129 | 2.51e-30 | 111 |
| MS.gene80180.t1 | MTR_4g078410 | 41.420 | 169 | 82 | 4 | 24 | 179 | 22 | 186 | 6.46e-30 | 108 |
| MS.gene80180.t1 | MTR_2g090575 | 41.379 | 174 | 84 | 6 | 12 | 173 | 7 | 174 | 9.18e-29 | 109 |
| MS.gene80180.t1 | MTR_4g112310 | 37.594 | 133 | 74 | 2 | 47 | 179 | 3 | 126 | 1.16e-28 | 103 |
| MS.gene80180.t1 | MTR_8g094990 | 41.104 | 163 | 76 | 4 | 14 | 158 | 12 | 172 | 2.44e-27 | 104 |
| MS.gene80180.t1 | MTR_4g130780 | 40.708 | 113 | 67 | 0 | 15 | 127 | 17 | 129 | 4.71e-27 | 101 |
| MS.gene80180.t1 | MTR_8g086360 | 42.537 | 134 | 66 | 4 | 23 | 156 | 20 | 142 | 9.96e-26 | 97.8 |
| MS.gene80180.t1 | MTR_4g124280 | 42.063 | 126 | 67 | 2 | 29 | 154 | 27 | 146 | 1.15e-24 | 96.3 |
| MS.gene80180.t1 | MTR_2g088990 | 35.811 | 148 | 86 | 4 | 14 | 157 | 12 | 154 | 1.69e-24 | 95.5 |
| MS.gene80180.t1 | MTR_8g095013 | 45.614 | 114 | 60 | 2 | 14 | 127 | 12 | 123 | 3.67e-24 | 96.3 |
| MS.gene80180.t1 | MTR_4g130800 | 40.496 | 121 | 67 | 3 | 12 | 128 | 11 | 130 | 1.25e-23 | 94.4 |
| MS.gene80180.t1 | MTR_4g130800 | 41.667 | 108 | 61 | 2 | 22 | 128 | 23 | 129 | 4.87e-21 | 87.4 |
| MS.gene80180.t1 | MTR_3g092170 | 35.443 | 158 | 89 | 5 | 12 | 160 | 2 | 155 | 5.23e-21 | 87.4 |
| MS.gene80180.t1 | MTR_8g095020 | 40.000 | 115 | 65 | 3 | 29 | 143 | 27 | 137 | 5.42e-21 | 88.2 |
| MS.gene80180.t1 | MTR_1g077790 | 36.735 | 98 | 61 | 1 | 31 | 127 | 32 | 129 | 2.17e-20 | 84.0 |
| MS.gene80180.t1 | MTR_8g007020 | 32.500 | 160 | 93 | 5 | 5 | 155 | 2 | 155 | 1.06e-18 | 79.7 |
| MS.gene80180.t1 | MTR_8g007035 | 39.344 | 122 | 66 | 4 | 10 | 129 | 7 | 122 | 1.42e-18 | 79.3 |
| MS.gene80180.t1 | MTR_4g114870 | 38.144 | 97 | 60 | 0 | 31 | 127 | 194 | 290 | 2.33e-18 | 81.3 |
| MS.gene80180.t1 | MTR_4g114870 | 34.058 | 138 | 83 | 2 | 12 | 144 | 8 | 142 | 2.60e-17 | 78.6 |
| MS.gene80180.t1 | MTR_8g099220 | 36.792 | 106 | 65 | 2 | 22 | 127 | 24 | 127 | 3.43e-18 | 76.6 |
| MS.gene80180.t1 | MTR_6g080660 | 36.441 | 118 | 69 | 3 | 17 | 134 | 18 | 129 | 8.23e-17 | 75.1 |
| MS.gene80180.t1 | MTR_6g013420 | 31.818 | 176 | 98 | 6 | 3 | 170 | 8 | 169 | 9.13e-17 | 74.3 |
| MS.gene80180.t1 | MTR_0334s0010 | 41.346 | 104 | 58 | 3 | 24 | 127 | 25 | 125 | 1.43e-16 | 74.3 |
| MS.gene80180.t1 | MTR_6g023760 | 40.385 | 104 | 57 | 3 | 24 | 127 | 23 | 121 | 1.63e-16 | 73.6 |
| MS.gene80180.t1 | MTR_5g006040 | 28.571 | 140 | 90 | 3 | 48 | 180 | 44 | 180 | 1.82e-16 | 73.6 |
| MS.gene80180.t1 | MTR_4g067200 | 31.481 | 162 | 94 | 5 | 22 | 179 | 23 | 171 | 2.49e-16 | 72.8 |
| MS.gene80180.t1 | MTR_4g066110 | 31.481 | 162 | 94 | 5 | 22 | 179 | 23 | 171 | 2.49e-16 | 72.8 |
| MS.gene80180.t1 | MTR_6g083240 | 33.540 | 161 | 101 | 4 | 17 | 175 | 18 | 174 | 2.67e-16 | 72.8 |
| MS.gene80180.t1 | MTR_4g114830 | 36.458 | 96 | 59 | 2 | 24 | 117 | 25 | 120 | 4.74e-16 | 72.0 |
| MS.gene80180.t1 | MTR_1g104800 | 28.986 | 138 | 85 | 2 | 48 | 174 | 43 | 178 | 9.02e-16 | 71.6 |
| MS.gene80180.t1 | MTR_1g090190 | 30.357 | 168 | 97 | 6 | 23 | 179 | 19 | 177 | 3.00e-15 | 70.1 |
| MS.gene80180.t1 | MTR_7g086090 | 34.109 | 129 | 75 | 3 | 8 | 131 | 2 | 125 | 3.02e-15 | 71.6 |
| MS.gene80180.t1 | MTR_3g099540 | 39.506 | 81 | 48 | 1 | 47 | 127 | 42 | 121 | 4.08e-14 | 66.2 |
| MS.gene80180.t1 | MTR_3g099570 | 37.500 | 96 | 58 | 2 | 47 | 142 | 41 | 134 | 4.81e-14 | 67.0 |
| MS.gene80180.t1 | MTR_7g086100 | 33.600 | 125 | 72 | 4 | 13 | 132 | 7 | 125 | 5.60e-14 | 67.8 |
| MS.gene80180.t1 | MTR_7g086230 | 29.677 | 155 | 101 | 3 | 8 | 159 | 4 | 153 | 1.56e-13 | 65.5 |
| MS.gene80180.t1 | MTR_7g086280 | 29.299 | 157 | 101 | 3 | 8 | 159 | 2 | 153 | 1.61e-13 | 65.5 |
| MS.gene80180.t1 | MTR_3g099580 | 40.741 | 81 | 47 | 1 | 47 | 127 | 41 | 120 | 1.79e-13 | 65.9 |
| MS.gene80180.t1 | MTR_2g025580 | 31.818 | 132 | 83 | 3 | 49 | 179 | 44 | 169 | 6.30e-13 | 63.9 |
| MS.gene80180.t1 | MTR_5g088000 | 31.111 | 135 | 80 | 5 | 12 | 144 | 5 | 128 | 4.62e-12 | 60.8 |
| MS.gene80180.t1 | MTR_3g099980 | 36.190 | 105 | 61 | 3 | 24 | 127 | 23 | 122 | 8.28e-12 | 61.6 |
| MS.gene80180.t1 | MTR_1g090420 | 24.490 | 147 | 108 | 3 | 15 | 159 | 15 | 160 | 1.12e-11 | 61.2 |
| MS.gene80180.t1 | MTR_1g072180 | 35.526 | 76 | 46 | 1 | 55 | 127 | 24 | 99 | 1.86e-11 | 58.5 |
| MS.gene80180.t1 | MTR_6g013200 | 33.333 | 129 | 72 | 5 | 7 | 127 | 9 | 131 | 2.51e-11 | 59.7 |
| MS.gene80180.t1 | MTR_3g099680 | 35.238 | 105 | 62 | 3 | 24 | 127 | 23 | 122 | 4.97e-11 | 59.7 |
| MS.gene80180.t1 | MTR_8g089110 | 36.364 | 77 | 48 | 1 | 49 | 125 | 43 | 118 | 7.41e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene80180.t1 | AT2G25060 | 56.442 | 163 | 68 | 2 | 11 | 172 | 15 | 175 | 2.02e-61 | 188 |
| MS.gene80180.t1 | AT4G31840 | 54.386 | 171 | 69 | 4 | 8 | 172 | 2 | 169 | 7.25e-58 | 179 |
| MS.gene80180.t1 | AT5G25090 | 47.222 | 180 | 84 | 3 | 6 | 174 | 4 | 183 | 2.13e-51 | 163 |
| MS.gene80180.t1 | AT4G30590 | 55.556 | 126 | 51 | 1 | 12 | 132 | 8 | 133 | 3.40e-48 | 155 |
| MS.gene80180.t1 | AT5G57920 | 54.545 | 121 | 54 | 1 | 22 | 141 | 18 | 138 | 3.04e-46 | 150 |
| MS.gene80180.t1 | AT5G57920 | 54.545 | 121 | 54 | 1 | 22 | 141 | 50 | 170 | 3.41e-46 | 151 |
| MS.gene80180.t1 | AT5G57920 | 54.622 | 119 | 53 | 1 | 24 | 141 | 19 | 137 | 1.24e-45 | 148 |
| MS.gene80180.t1 | AT2G23990 | 48.077 | 156 | 68 | 3 | 1 | 155 | 1 | 144 | 4.35e-42 | 140 |
| MS.gene80180.t1 | AT2G23990 | 42.857 | 175 | 68 | 4 | 1 | 155 | 1 | 163 | 1.15e-37 | 129 |
| MS.gene80180.t1 | AT1G48940 | 40.116 | 172 | 97 | 4 | 11 | 180 | 10 | 177 | 4.01e-34 | 119 |
| MS.gene80180.t1 | AT3G18590 | 50.420 | 119 | 54 | 3 | 12 | 128 | 12 | 127 | 1.13e-33 | 118 |
| MS.gene80180.t1 | AT3G20570 | 34.884 | 172 | 83 | 3 | 12 | 156 | 15 | 184 | 2.38e-32 | 115 |
| MS.gene80180.t1 | AT4G27520 | 44.595 | 148 | 69 | 3 | 12 | 159 | 16 | 150 | 3.32e-31 | 115 |
| MS.gene80180.t1 | AT5G53870 | 44.079 | 152 | 68 | 5 | 11 | 155 | 7 | 148 | 3.47e-30 | 113 |
| MS.gene80180.t1 | AT5G53870 | 44.079 | 152 | 68 | 5 | 11 | 155 | 7 | 148 | 4.12e-30 | 113 |
| MS.gene80180.t1 | AT5G14345 | 46.429 | 112 | 57 | 2 | 36 | 146 | 24 | 133 | 3.01e-29 | 105 |
| MS.gene80180.t1 | AT4G28365 | 37.975 | 158 | 84 | 6 | 12 | 158 | 11 | 165 | 3.15e-27 | 102 |
| MS.gene80180.t1 | AT4G32490 | 39.416 | 137 | 75 | 4 | 3 | 134 | 2 | 135 | 9.39e-27 | 101 |
| MS.gene80180.t1 | AT1G79800 | 44.762 | 105 | 54 | 3 | 25 | 128 | 32 | 133 | 3.59e-26 | 99.4 |
| MS.gene80180.t1 | AT1G64640 | 33.571 | 140 | 89 | 2 | 4 | 140 | 6 | 144 | 1.20e-22 | 90.1 |
| MS.gene80180.t1 | AT2G31050 | 36.765 | 136 | 82 | 2 | 10 | 145 | 11 | 142 | 1.38e-21 | 87.4 |
| MS.gene80180.t1 | AT2G32300 | 35.417 | 144 | 83 | 4 | 18 | 160 | 17 | 151 | 2.77e-20 | 85.5 |
| MS.gene80180.t1 | AT2G32300 | 35.417 | 144 | 83 | 4 | 18 | 160 | 47 | 181 | 4.92e-20 | 85.1 |
| MS.gene80180.t1 | AT2G26720 | 32.353 | 136 | 88 | 2 | 10 | 145 | 11 | 142 | 5.33e-20 | 83.6 |
| MS.gene80180.t1 | AT5G07475 | 29.412 | 187 | 114 | 7 | 6 | 180 | 3 | 183 | 1.71e-18 | 79.3 |
| MS.gene80180.t1 | AT3G60270 | 37.374 | 99 | 57 | 2 | 31 | 129 | 29 | 122 | 5.40e-16 | 72.4 |
| MS.gene80180.t1 | AT5G26330 | 33.721 | 86 | 57 | 0 | 49 | 134 | 43 | 128 | 3.98e-15 | 70.1 |
| MS.gene80180.t1 | AT1G72230 | 37.755 | 98 | 51 | 2 | 39 | 127 | 21 | 117 | 5.75e-15 | 69.7 |
| MS.gene80180.t1 | AT3G17675 | 30.645 | 124 | 75 | 3 | 10 | 127 | 9 | 127 | 1.72e-14 | 67.0 |
| MS.gene80180.t1 | AT5G20230 | 31.034 | 116 | 74 | 2 | 31 | 141 | 28 | 142 | 1.55e-13 | 66.2 |
| MS.gene80180.t1 | AT1G45063 | 32.812 | 128 | 81 | 3 | 2 | 128 | 4 | 127 | 3.87e-13 | 66.2 |
| MS.gene80180.t1 | AT1G45063 | 34.694 | 98 | 61 | 2 | 31 | 127 | 152 | 247 | 9.42e-13 | 65.1 |
| MS.gene80180.t1 | AT1G45063 | 32.812 | 128 | 81 | 3 | 2 | 128 | 4 | 127 | 6.42e-13 | 66.2 |
| MS.gene80180.t1 | AT1G45063 | 34.694 | 98 | 61 | 2 | 31 | 127 | 152 | 247 | 1.53e-12 | 65.1 |
| MS.gene80180.t1 | AT2G27035 | 28.105 | 153 | 90 | 5 | 29 | 180 | 30 | 163 | 6.64e-13 | 63.5 |
| MS.gene80180.t1 | AT4G01380 | 34.545 | 110 | 68 | 4 | 35 | 142 | 79 | 186 | 7.87e-13 | 64.3 |
| MS.gene80180.t1 | AT3G27200 | 38.095 | 84 | 50 | 2 | 46 | 128 | 40 | 122 | 1.38e-12 | 63.2 |
| MS.gene80180.t1 | AT3G60280 | 37.374 | 99 | 57 | 3 | 31 | 129 | 27 | 120 | 1.39e-12 | 63.9 |
| MS.gene80180.t1 | AT2G44790 | 40.964 | 83 | 46 | 2 | 49 | 129 | 45 | 126 | 7.31e-12 | 61.6 |
| MS.gene80180.t1 | AT1G22480 | 39.024 | 82 | 49 | 1 | 54 | 135 | 41 | 121 | 6.08e-11 | 58.5 |
Find 48 sgRNAs with CRISPR-Local
Find 53 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGGACTTGTGACTGTTC+TGG | 0.274010 | 3.4:-92445625 | MS.gene80180:CDS |
| TTGTTCTTGTTCCTTCTCTT+TGG | 0.278533 | 3.4:-92446169 | MS.gene80180:CDS |
| CCCATCATTGTAATGTTCAA+TGG | 0.374125 | 3.4:+92445848 | None:intergenic |
| CCATCATTGTAATGTTCAAT+GGG | 0.379061 | 3.4:+92445849 | None:intergenic |
| GGGACTGTTGGCTATTTATG+TGG | 0.381502 | 3.4:-92445604 | MS.gene80180:CDS |
| GCTCCACTGATGAAGTAAAA+TGG | 0.384841 | 3.4:+92445795 | None:intergenic |
| ACTGGACTTGTGACTGTTCT+GGG | 0.401738 | 3.4:-92445624 | MS.gene80180:CDS |
| CTCTGCAGCTAAGGAACTAT+TGG | 0.408413 | 3.4:-92446143 | MS.gene80180:CDS |
| CCCATTGAACATTACAATGA+TGG | 0.412359 | 3.4:-92445849 | MS.gene80180:CDS |
| TTCAAAGTCGGCGATCATCT+TGG | 0.440071 | 3.4:-92446043 | MS.gene80180:intron |
| TACTTCATCAGTGGAGCAAA+GGG | 0.460490 | 3.4:-92445789 | MS.gene80180:CDS |
| GGACCTTCTTCCAACTCTGC+TGG | 0.465938 | 3.4:+92445684 | None:intergenic |
| AGTGCGCCGGTGTTGCGAAC+TGG | 0.466338 | 3.4:-92445642 | MS.gene80180:CDS |
| CTTTGGTTTCTCTGCAGCTA+AGG | 0.473136 | 3.4:-92446152 | MS.gene80180:CDS |
| CTGCTAGTTGGTGCAACAGC+TGG | 0.474292 | 3.4:+92445663 | None:intergenic |
| GGACTGTTGGCTATTTATGT+GGG | 0.487905 | 3.4:-92445603 | MS.gene80180:CDS |
| AGTGAGTCTGCTTCAGATGA+TGG | 0.493397 | 3.4:+92446091 | None:intergenic |
| TGCACCATCTCCAGCAGAGT+TGG | 0.499713 | 3.4:-92445694 | MS.gene80180:CDS |
| TCTTCCAACTCTGCTGGAGA+TGG | 0.500018 | 3.4:+92445690 | None:intergenic |
| TGTGACTGTTCTGGGACTGT+TGG | 0.507080 | 3.4:-92445616 | MS.gene80180:CDS |
| AACTCTGCTGGAGATGGTGC+AGG | 0.510903 | 3.4:+92445696 | None:intergenic |
| TTTGCAGTTTGGAAATATGA+TGG | 0.513645 | 3.4:-92445933 | MS.gene80180:intron |
| AGCAGACTCACTCAACCAAT+GGG | 0.514967 | 3.4:-92446080 | MS.gene80180:CDS |
| AACACCGGCGCACTGCTAGT+TGG | 0.529681 | 3.4:+92445651 | None:intergenic |
| TCTCCAAAGAAAAGATCCAT+TGG | 0.532263 | 3.4:-92445726 | MS.gene80180:CDS |
| CCATTGAACATTACAATGAT+GGG | 0.540182 | 3.4:-92445848 | MS.gene80180:CDS |
| TTACTTCATCAGTGGAGCAA+AGG | 0.544859 | 3.4:-92445790 | MS.gene80180:CDS |
| AAGCAGACTCACTCAACCAA+TGG | 0.548958 | 3.4:-92446081 | MS.gene80180:CDS |
| GCAAAGGGACACTGTGAGCA+AGG | 0.567702 | 3.4:-92445774 | MS.gene80180:CDS |
| CTGATGAAGTAAAATGGTCC+AGG | 0.572076 | 3.4:+92445801 | None:intergenic |
| CAGTTTGGAAATATGATGGT+GGG | 0.580211 | 3.4:-92445929 | MS.gene80180:CDS |
| TGCACCAACTAGCAGTGCGC+CGG | 0.584450 | 3.4:-92445655 | MS.gene80180:CDS |
| GAAAAGTCTCGTTTCAAAGT+CGG | 0.587560 | 3.4:-92446055 | MS.gene80180:CDS |
| TCTCCAGCAGAGTTGGAAGA+AGG | 0.588093 | 3.4:-92445687 | MS.gene80180:CDS |
| ACAAGTCCAGTTCGCAACAC+CGG | 0.589779 | 3.4:+92445636 | None:intergenic |
| TGGTGCAGGTGAAACTCCAA+TGG | 0.600203 | 3.4:+92445710 | None:intergenic |
| GCAGTTTGGAAATATGATGG+TGG | 0.604799 | 3.4:-92445930 | MS.gene80180:intron |
| AGGCAAGATAGATGCATGGA+AGG | 0.615286 | 3.4:-92446116 | MS.gene80180:CDS |
| CTGCAGAGAAACCAAAGAGA+AGG | 0.616684 | 3.4:+92446158 | None:intergenic |
| AAGGTAAAGCTAGACAGACC+TGG | 0.622619 | 3.4:-92445819 | MS.gene80180:CDS |
| CATCATTGTAATGTTCAATG+GGG | 0.626069 | 3.4:+92445850 | None:intergenic |
| GCAGCTAAGGAACTATTGGT+CGG | 0.634929 | 3.4:-92446139 | MS.gene80180:CDS |
| AGTTCTTGAGAACACAGCCA+TGG | 0.674329 | 3.4:+92446207 | None:intergenic |
| TCGGAGGCAAGATAGATGCA+TGG | 0.675253 | 3.4:-92446120 | MS.gene80180:CDS |
| AGGACAAAAGCTGATTGTGG+TGG | 0.679977 | 3.4:-92445754 | MS.gene80180:CDS |
| GCTAAGGAACTATTGGTCGG+AGG | 0.690687 | 3.4:-92446136 | MS.gene80180:CDS |
| GCAAGGACAAAAGCTGATTG+TGG | 0.718198 | 3.4:-92445757 | MS.gene80180:CDS |
| TTACAATGATGGGAACACGA+AGG | 0.756088 | 3.4:-92445838 | MS.gene80180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATTTCCAAACTGCAAAACAA+AGG | + | chr3.4:92445858-92445877 | None:intergenic | 30.0% | |
| CATCATTGTAATGTTCAATG+GGG | + | chr3.4:92445948-92445967 | None:intergenic | 30.0% | |
| CCATCATTGTAATGTTCAAT+GGG | + | chr3.4:92445949-92445968 | None:intergenic | 30.0% | |
| CCATTGAACATTACAATGAT+GGG | - | chr3.4:92445947-92445966 | MS.gene80180:intron | 30.0% | |
| TTTGCAGTTTGGAAATATGA+TGG | - | chr3.4:92445862-92445881 | MS.gene80180:CDS | 30.0% | |
| !!! | TTTACCTTTGTTTTGCAGTT+TGG | - | chr3.4:92445851-92445870 | MS.gene80180:CDS | 30.0% |
| AGAAAAAGATGTGTCAGTGA+TGG | + | chr3.4:92445831-92445850 | None:intergenic | 35.0% | |
| CAGTTTGGAAATATGATGGT+GGG | - | chr3.4:92445866-92445885 | MS.gene80180:CDS | 35.0% | |
| CCCATCATTGTAATGTTCAA+TGG | + | chr3.4:92445950-92445969 | None:intergenic | 35.0% | |
| CCCATTGAACATTACAATGA+TGG | - | chr3.4:92445946-92445965 | MS.gene80180:intron | 35.0% | |
| GAAAAGTCTCGTTTCAAAGT+CGG | - | chr3.4:92445740-92445759 | MS.gene80180:CDS | 35.0% | |
| TCTCCAAAGAAAAGATCCAT+TGG | - | chr3.4:92446069-92446088 | MS.gene80180:CDS | 35.0% | |
| TTGTTCTTGTTCCTTCTCTT+TGG | - | chr3.4:92445626-92445645 | MS.gene80180:CDS | 35.0% | |
| ! | ACTCCAATGGATCTTTTCTT+TGG | + | chr3.4:92446075-92446094 | None:intergenic | 35.0% |
| CTGATGAAGTAAAATGGTCC+AGG | + | chr3.4:92445997-92446016 | None:intergenic | 40.0% | |
| GCAGTTTGGAAATATGATGG+TGG | - | chr3.4:92445865-92445884 | MS.gene80180:CDS | 40.0% | |
| GCTCCACTGATGAAGTAAAA+TGG | + | chr3.4:92446003-92446022 | None:intergenic | 40.0% | |
| TACTTCATCAGTGGAGCAAA+GGG | - | chr3.4:92446006-92446025 | MS.gene80180:intron | 40.0% | |
| TTACTTCATCAGTGGAGCAA+AGG | - | chr3.4:92446005-92446024 | MS.gene80180:intron | 40.0% | |
| ! | GGACCATTTTACTTCATCAG+TGG | - | chr3.4:92445997-92446016 | MS.gene80180:intron | 40.0% |
| ! | GGACTGTTGGCTATTTATGT+GGG | - | chr3.4:92446192-92446211 | MS.gene80180:CDS | 40.0% |
| ! | TTACAATGATGGGAACACGA+AGG | - | chr3.4:92445957-92445976 | MS.gene80180:intron | 40.0% |
| AACTGGACTTGTGACTGTTC+TGG | - | chr3.4:92446170-92446189 | MS.gene80180:CDS | 45.0% | |
| AAGCAGACTCACTCAACCAA+TGG | - | chr3.4:92445714-92445733 | MS.gene80180:CDS | 45.0% | |
| AAGGTAAAGCTAGACAGACC+TGG | - | chr3.4:92445976-92445995 | MS.gene80180:intron | 45.0% | |
| ACTGGACTTGTGACTGTTCT+GGG | - | chr3.4:92446171-92446190 | MS.gene80180:CDS | 45.0% | |
| AGCAGACTCACTCAACCAAT+GGG | - | chr3.4:92445715-92445734 | MS.gene80180:CDS | 45.0% | |
| AGGACAAAAGCTGATTGTGG+TGG | - | chr3.4:92446041-92446060 | MS.gene80180:intron | 45.0% | |
| AGGCAAGATAGATGCATGGA+AGG | - | chr3.4:92445679-92445698 | MS.gene80180:CDS | 45.0% | |
| AGTGAGTCTGCTTCAGATGA+TGG | + | chr3.4:92445707-92445726 | None:intergenic | 45.0% | |
| CTCTGCAGCTAAGGAACTAT+TGG | - | chr3.4:92445652-92445671 | MS.gene80180:CDS | 45.0% | |
| CTGCAGAGAAACCAAAGAGA+AGG | + | chr3.4:92445640-92445659 | None:intergenic | 45.0% | |
| GCAAGGACAAAAGCTGATTG+TGG | - | chr3.4:92446038-92446057 | MS.gene80180:intron | 45.0% | |
| GCAGCTAAGGAACTATTGGT+CGG | - | chr3.4:92445656-92445675 | MS.gene80180:CDS | 45.0% | |
| TTCAAAGTCGGCGATCATCT+TGG | - | chr3.4:92445752-92445771 | MS.gene80180:CDS | 45.0% | |
| ! | AACGAGACTTTTCTGCCCAT+TGG | + | chr3.4:92445733-92445752 | None:intergenic | 45.0% |
| ! | CTTTGGTTTCTCTGCAGCTA+AGG | - | chr3.4:92445643-92445662 | MS.gene80180:CDS | 45.0% |
| ! | GGGACTGTTGGCTATTTATG+TGG | - | chr3.4:92446191-92446210 | MS.gene80180:CDS | 45.0% |
| ACAAGTCCAGTTCGCAACAC+CGG | + | chr3.4:92446162-92446181 | None:intergenic | 50.0% | |
| GCTAAGGAACTATTGGTCGG+AGG | - | chr3.4:92445659-92445678 | MS.gene80180:CDS | 50.0% | |
| TCGGAGGCAAGATAGATGCA+TGG | - | chr3.4:92445675-92445694 | MS.gene80180:CDS | 50.0% | |
| TCTCCAGCAGAGTTGGAAGA+AGG | - | chr3.4:92446108-92446127 | MS.gene80180:CDS | 50.0% | |
| TCTTCCAACTCTGCTGGAGA+TGG | + | chr3.4:92446108-92446127 | None:intergenic | 50.0% | |
| TGGTGCAGGTGAAACTCCAA+TGG | + | chr3.4:92446088-92446107 | None:intergenic | 50.0% | |
| !! | TGTGACTGTTCTGGGACTGT+TGG | - | chr3.4:92446179-92446198 | MS.gene80180:CDS | 50.0% |
| AACTCTGCTGGAGATGGTGC+AGG | + | chr3.4:92446102-92446121 | None:intergenic | 55.0% | |
| GCAAAGGGACACTGTGAGCA+AGG | - | chr3.4:92446021-92446040 | MS.gene80180:intron | 55.0% | |
| GGACCTTCTTCCAACTCTGC+TGG | + | chr3.4:92446114-92446133 | None:intergenic | 55.0% | |
| TGCACCATCTCCAGCAGAGT+TGG | - | chr3.4:92446101-92446120 | MS.gene80180:CDS | 55.0% | |
| ! | CTGCTAGTTGGTGCAACAGC+TGG | + | chr3.4:92446135-92446154 | None:intergenic | 55.0% |
| AACACCGGCGCACTGCTAGT+TGG | + | chr3.4:92446147-92446166 | None:intergenic | 60.0% | |
| TGCACCAACTAGCAGTGCGC+CGG | - | chr3.4:92446140-92446159 | MS.gene80180:CDS | 60.0% | |
| !! | AGTGCGCCGGTGTTGCGAAC+TGG | - | chr3.4:92446153-92446172 | MS.gene80180:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 92445590 | 92446227 | 92445590 | ID=MS.gene80180 |
| chr3.4 | mRNA | 92445590 | 92446227 | 92445590 | ID=MS.gene80180.t1;Parent=MS.gene80180 |
| chr3.4 | exon | 92446044 | 92446227 | 92446044 | ID=MS.gene80180.t1.exon1;Parent=MS.gene80180.t1 |
| chr3.4 | CDS | 92446044 | 92446227 | 92446044 | ID=cds.MS.gene80180.t1;Parent=MS.gene80180.t1 |
| chr3.4 | exon | 92445590 | 92445948 | 92445590 | ID=MS.gene80180.t1.exon2;Parent=MS.gene80180.t1 |
| chr3.4 | CDS | 92445590 | 92445948 | 92445590 | ID=cds.MS.gene80180.t1;Parent=MS.gene80180.t1 |
| Gene Sequence |
| Protein sequence |
