Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32703.t1 | XP_003603289.1 | 97.2 | 180 | 5 | 0 | 1 | 180 | 1 | 180 | 1.20E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32703.t1 | Q9SK27 | 54.4 | 169 | 74 | 2 | 5 | 172 | 9 | 175 | 1.2e-44 | 181.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32703.t1 | G7J9U0 | 97.2 | 180 | 5 | 0 | 1 | 180 | 1 | 180 | 9.0e-91 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049133 | MS.gene32703 | 0.805294 | 1.43E-49 | -1.69E-46 |
| MS.gene049397 | MS.gene32703 | 0.80707 | 6.05E-50 | -1.69E-46 |
| MS.gene049418 | MS.gene32703 | 0.824108 | 9.65E-54 | -1.69E-46 |
| MS.gene049596 | MS.gene32703 | 0.832512 | 9.06E-56 | -1.69E-46 |
| MS.gene049622 | MS.gene32703 | 0.847113 | 1.42E-59 | -1.69E-46 |
| MS.gene049697 | MS.gene32703 | 0.804308 | 2.30E-49 | -1.69E-46 |
| MS.gene04972 | MS.gene32703 | 0.816556 | 5.20E-52 | -1.69E-46 |
| MS.gene04985 | MS.gene32703 | 0.812562 | 3.98E-51 | -1.69E-46 |
| MS.gene049989 | MS.gene32703 | 0.870581 | 1.31E-66 | -1.69E-46 |
| MS.gene050297 | MS.gene32703 | 0.912881 | 1.17E-83 | -1.69E-46 |
| MS.gene050310 | MS.gene32703 | 0.824733 | 6.88E-54 | -1.69E-46 |
| MS.gene050648 | MS.gene32703 | 0.836754 | 7.77E-57 | -1.69E-46 |
| MS.gene051094 | MS.gene32703 | 0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene05124 | MS.gene32703 | 0.820533 | 6.52E-53 | -1.69E-46 |
| MS.gene051263 | MS.gene32703 | 0.868424 | 6.60E-66 | -1.69E-46 |
| MS.gene051478 | MS.gene32703 | 0.863995 | 1.67E-64 | -1.69E-46 |
| MS.gene051629 | MS.gene32703 | 0.82828 | 9.81E-55 | -1.69E-46 |
| MS.gene051648 | MS.gene32703 | 0.804199 | 2.42E-49 | -1.69E-46 |
| MS.gene051698 | MS.gene32703 | 0.803403 | 3.55E-49 | -1.69E-46 |
| MS.gene051742 | MS.gene32703 | 0.803216 | 3.87E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene32703 | 0.82735 | 1.64E-54 | -1.69E-46 |
| MS.gene052143 | MS.gene32703 | 0.868633 | 5.65E-66 | -1.69E-46 |
| MS.gene052308 | MS.gene32703 | 0.811334 | 7.38E-51 | -1.69E-46 |
| MS.gene052367 | MS.gene32703 | 0.886709 | 2.70E-72 | -1.69E-46 |
| MS.gene053173 | MS.gene32703 | 0.834771 | 2.47E-56 | -1.69E-46 |
| MS.gene053348 | MS.gene32703 | 0.804944 | 1.69E-49 | -1.69E-46 |
| MS.gene053416 | MS.gene32703 | 0.857038 | 2.14E-62 | -1.69E-46 |
| MS.gene053417 | MS.gene32703 | 0.861752 | 8.23E-64 | -1.69E-46 |
| MS.gene05369 | MS.gene32703 | 0.80526 | 1.45E-49 | -1.69E-46 |
| MS.gene054551 | MS.gene32703 | 0.836576 | 8.63E-57 | -1.69E-46 |
| MS.gene054593 | MS.gene32703 | 0.800185 | 1.62E-48 | -1.69E-46 |
| MS.gene054643 | MS.gene32703 | 0.887826 | 1.01E-72 | -1.69E-46 |
| MS.gene055308 | MS.gene32703 | 0.824126 | 9.56E-54 | -1.69E-46 |
| MS.gene055578 | MS.gene32703 | 0.823344 | 1.46E-53 | -1.69E-46 |
| MS.gene055764 | MS.gene32703 | 0.806239 | 9.06E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene32703 | 0.890796 | 7.13E-74 | -1.69E-46 |
| MS.gene056041 | MS.gene32703 | 0.873308 | 1.63E-67 | -1.69E-46 |
| MS.gene056042 | MS.gene32703 | 0.848962 | 4.39E-60 | -1.69E-46 |
| MS.gene056335 | MS.gene32703 | 0.809393 | 1.93E-50 | -1.69E-46 |
| MS.gene05640 | MS.gene32703 | 0.807556 | 4.77E-50 | -1.69E-46 |
| MS.gene056526 | MS.gene32703 | 0.829247 | 5.73E-55 | -1.69E-46 |
| MS.gene057004 | MS.gene32703 | 0.804463 | 2.13E-49 | -1.69E-46 |
| MS.gene057458 | MS.gene32703 | 0.832747 | 7.92E-56 | -1.69E-46 |
| MS.gene057483 | MS.gene32703 | 0.843632 | 1.24E-58 | -1.69E-46 |
| MS.gene058196 | MS.gene32703 | 0.836141 | 1.11E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene32703 | 0.848218 | 7.05E-60 | -1.69E-46 |
| MS.gene058198 | MS.gene32703 | 0.847125 | 1.41E-59 | -1.69E-46 |
| MS.gene058818 | MS.gene32703 | 0.866364 | 3.01E-65 | -1.69E-46 |
| MS.gene058844 | MS.gene32703 | 0.8313 | 1.81E-55 | -1.69E-46 |
| MS.gene059300 | MS.gene32703 | 0.876857 | 1.00E-68 | -1.69E-46 |
| MS.gene059553 | MS.gene32703 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene060473 | MS.gene32703 | 0.860764 | 1.65E-63 | -1.69E-46 |
| MS.gene060565 | MS.gene32703 | 0.862396 | 5.22E-64 | -1.69E-46 |
| MS.gene06057 | MS.gene32703 | 0.895736 | 7.22E-76 | -1.69E-46 |
| MS.gene060825 | MS.gene32703 | 0.804254 | 2.36E-49 | -1.69E-46 |
| MS.gene06093 | MS.gene32703 | 0.810838 | 9.44E-51 | -1.69E-46 |
| MS.gene061099 | MS.gene32703 | 0.840367 | 9.08E-58 | -1.69E-46 |
| MS.gene061260 | MS.gene32703 | 0.871401 | 7.03E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene032997 | MS.gene32703 | PPI |
| MS.gene32703 | MS.gene065888 | PPI |
| MS.gene32703 | MS.gene031754 | PPI |
| MS.gene32703 | MS.gene038783 | PPI |
| MS.gene006553 | MS.gene32703 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32703.t1 | MTR_3g105930 | 97.222 | 180 | 5 | 0 | 1 | 180 | 1 | 180 | 2.04e-128 | 358 |
| MS.gene32703.t1 | MTR_7g090170 | 86.667 | 165 | 5 | 1 | 1 | 165 | 1 | 148 | 3.57e-85 | 247 |
| MS.gene32703.t1 | MTR_1g014120 | 66.897 | 145 | 44 | 2 | 7 | 147 | 4 | 148 | 7.93e-67 | 202 |
| MS.gene32703.t1 | MTR_8g463180 | 48.889 | 135 | 60 | 4 | 12 | 142 | 5 | 134 | 3.61e-37 | 130 |
| MS.gene32703.t1 | MTR_4g081100 | 48.760 | 121 | 61 | 1 | 11 | 131 | 16 | 135 | 5.25e-36 | 125 |
| MS.gene32703.t1 | MTR_2g079030 | 47.222 | 144 | 70 | 3 | 12 | 152 | 10 | 150 | 1.06e-34 | 127 |
| MS.gene32703.t1 | MTR_4g077787 | 38.919 | 185 | 94 | 6 | 1 | 176 | 1 | 175 | 3.35e-34 | 119 |
| MS.gene32703.t1 | MTR_2g101300 | 44.203 | 138 | 69 | 5 | 23 | 157 | 23 | 155 | 7.23e-34 | 119 |
| MS.gene32703.t1 | MTR_2g090580 | 42.593 | 162 | 78 | 5 | 10 | 159 | 2 | 160 | 1.26e-33 | 118 |
| MS.gene32703.t1 | MTR_4g111640 | 38.122 | 181 | 92 | 7 | 8 | 179 | 7 | 176 | 5.98e-33 | 116 |
| MS.gene32703.t1 | MTR_6g022170 | 51.515 | 99 | 45 | 2 | 31 | 128 | 37 | 133 | 2.97e-30 | 108 |
| MS.gene32703.t1 | MTR_2g083250 | 50.000 | 108 | 51 | 3 | 24 | 129 | 23 | 129 | 3.56e-30 | 111 |
| MS.gene32703.t1 | MTR_4g078410 | 40.828 | 169 | 83 | 4 | 24 | 179 | 22 | 186 | 8.54e-30 | 108 |
| MS.gene32703.t1 | MTR_4g112310 | 37.594 | 133 | 74 | 2 | 47 | 179 | 3 | 126 | 1.21e-28 | 103 |
| MS.gene32703.t1 | MTR_2g090575 | 40.805 | 174 | 85 | 6 | 12 | 173 | 7 | 174 | 1.38e-28 | 108 |
| MS.gene32703.t1 | MTR_4g130780 | 41.593 | 113 | 66 | 0 | 15 | 127 | 17 | 129 | 2.75e-27 | 101 |
| MS.gene32703.t1 | MTR_8g094990 | 40.491 | 163 | 77 | 4 | 14 | 158 | 12 | 172 | 3.56e-27 | 103 |
| MS.gene32703.t1 | MTR_8g086360 | 41.791 | 134 | 67 | 4 | 23 | 156 | 20 | 142 | 1.46e-25 | 97.4 |
| MS.gene32703.t1 | MTR_4g124280 | 41.129 | 124 | 68 | 1 | 31 | 154 | 28 | 146 | 1.37e-24 | 96.3 |
| MS.gene32703.t1 | MTR_2g088990 | 35.135 | 148 | 87 | 4 | 14 | 157 | 12 | 154 | 2.77e-24 | 95.1 |
| MS.gene32703.t1 | MTR_8g095013 | 44.737 | 114 | 61 | 2 | 14 | 127 | 12 | 123 | 5.68e-24 | 95.9 |
| MS.gene32703.t1 | MTR_4g130800 | 39.669 | 121 | 68 | 3 | 12 | 128 | 11 | 130 | 2.04e-23 | 93.6 |
| MS.gene32703.t1 | MTR_8g095020 | 39.130 | 115 | 66 | 3 | 29 | 143 | 27 | 137 | 7.29e-21 | 87.8 |
| MS.gene32703.t1 | MTR_4g130800 | 40.741 | 108 | 62 | 2 | 22 | 128 | 23 | 129 | 7.45e-21 | 87.0 |
| MS.gene32703.t1 | MTR_3g092170 | 34.810 | 158 | 90 | 5 | 12 | 160 | 2 | 155 | 7.52e-21 | 87.0 |
| MS.gene32703.t1 | MTR_1g077790 | 36.735 | 98 | 61 | 1 | 31 | 127 | 32 | 129 | 2.32e-20 | 84.0 |
| MS.gene32703.t1 | MTR_8g007020 | 32.258 | 155 | 90 | 5 | 10 | 155 | 7 | 155 | 1.52e-18 | 79.0 |
| MS.gene32703.t1 | MTR_8g007035 | 38.525 | 122 | 67 | 4 | 10 | 129 | 7 | 122 | 1.88e-18 | 79.3 |
| MS.gene32703.t1 | MTR_4g114870 | 38.144 | 97 | 60 | 0 | 31 | 127 | 194 | 290 | 2.40e-18 | 81.3 |
| MS.gene32703.t1 | MTR_4g114870 | 33.333 | 138 | 84 | 2 | 12 | 144 | 8 | 142 | 3.27e-17 | 78.2 |
| MS.gene32703.t1 | MTR_8g099220 | 35.849 | 106 | 66 | 2 | 22 | 127 | 24 | 127 | 4.68e-18 | 76.3 |
| MS.gene32703.t1 | MTR_6g080660 | 35.593 | 118 | 70 | 3 | 17 | 134 | 18 | 129 | 1.09e-16 | 74.7 |
| MS.gene32703.t1 | MTR_6g013420 | 31.250 | 176 | 99 | 6 | 3 | 170 | 8 | 169 | 1.39e-16 | 73.9 |
| MS.gene32703.t1 | MTR_5g006040 | 28.571 | 140 | 90 | 3 | 48 | 180 | 44 | 180 | 2.02e-16 | 73.6 |
| MS.gene32703.t1 | MTR_0334s0010 | 40.385 | 104 | 59 | 3 | 24 | 127 | 25 | 125 | 2.04e-16 | 73.9 |
| MS.gene32703.t1 | MTR_6g023760 | 39.423 | 104 | 58 | 3 | 24 | 127 | 23 | 121 | 2.56e-16 | 73.2 |
| MS.gene32703.t1 | MTR_4g067200 | 32.258 | 155 | 89 | 4 | 29 | 179 | 29 | 171 | 3.07e-16 | 72.8 |
| MS.gene32703.t1 | MTR_4g066110 | 32.258 | 155 | 89 | 4 | 29 | 179 | 29 | 171 | 3.07e-16 | 72.8 |
| MS.gene32703.t1 | MTR_6g083240 | 32.919 | 161 | 102 | 4 | 17 | 175 | 18 | 174 | 3.82e-16 | 72.4 |
| MS.gene32703.t1 | MTR_4g114830 | 35.417 | 96 | 60 | 2 | 24 | 117 | 25 | 120 | 7.70e-16 | 71.2 |
| MS.gene32703.t1 | MTR_1g104800 | 28.986 | 138 | 85 | 2 | 48 | 174 | 43 | 178 | 8.74e-16 | 71.6 |
| MS.gene32703.t1 | MTR_1g090190 | 29.412 | 170 | 101 | 5 | 21 | 179 | 16 | 177 | 2.06e-15 | 70.9 |
| MS.gene32703.t1 | MTR_7g086090 | 33.333 | 129 | 76 | 3 | 8 | 131 | 2 | 125 | 4.55e-15 | 70.9 |
| MS.gene32703.t1 | MTR_3g099540 | 39.506 | 81 | 48 | 1 | 47 | 127 | 42 | 121 | 4.30e-14 | 66.2 |
| MS.gene32703.t1 | MTR_3g099570 | 37.500 | 96 | 58 | 2 | 47 | 142 | 41 | 134 | 4.57e-14 | 67.4 |
| MS.gene32703.t1 | MTR_7g086100 | 32.800 | 125 | 73 | 4 | 13 | 132 | 7 | 125 | 8.34e-14 | 67.4 |
| MS.gene32703.t1 | MTR_3g099580 | 40.741 | 81 | 47 | 1 | 47 | 127 | 41 | 120 | 1.82e-13 | 65.5 |
| MS.gene32703.t1 | MTR_7g086230 | 29.032 | 155 | 102 | 3 | 8 | 159 | 4 | 153 | 2.20e-13 | 65.1 |
| MS.gene32703.t1 | MTR_7g086280 | 28.947 | 152 | 98 | 3 | 13 | 159 | 7 | 153 | 2.22e-13 | 65.1 |
| MS.gene32703.t1 | MTR_2g025580 | 31.818 | 132 | 83 | 3 | 49 | 179 | 44 | 169 | 6.04e-13 | 63.9 |
| MS.gene32703.t1 | MTR_1g090420 | 25.170 | 147 | 107 | 3 | 15 | 159 | 15 | 160 | 6.13e-12 | 62.0 |
| MS.gene32703.t1 | MTR_5g088000 | 30.370 | 135 | 81 | 5 | 12 | 144 | 5 | 128 | 7.55e-12 | 60.5 |
| MS.gene32703.t1 | MTR_3g099980 | 37.634 | 93 | 53 | 2 | 36 | 127 | 34 | 122 | 9.54e-12 | 61.6 |
| MS.gene32703.t1 | MTR_1g072180 | 35.526 | 76 | 46 | 1 | 55 | 127 | 24 | 99 | 1.92e-11 | 58.2 |
| MS.gene32703.t1 | MTR_6g013200 | 33.913 | 115 | 68 | 4 | 15 | 127 | 23 | 131 | 3.86e-11 | 59.3 |
| MS.gene32703.t1 | MTR_3g099680 | 36.559 | 93 | 54 | 2 | 36 | 127 | 34 | 122 | 4.92e-11 | 59.7 |
| MS.gene32703.t1 | MTR_8g089110 | 36.364 | 77 | 48 | 1 | 49 | 125 | 43 | 118 | 7.57e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene32703.t1 | AT2G25060 | 55.828 | 163 | 69 | 2 | 11 | 172 | 15 | 175 | 2.84e-61 | 188 |
| MS.gene32703.t1 | AT4G31840 | 53.801 | 171 | 70 | 4 | 8 | 172 | 2 | 169 | 9.63e-58 | 179 |
| MS.gene32703.t1 | AT5G25090 | 46.667 | 180 | 85 | 3 | 6 | 174 | 4 | 183 | 3.19e-51 | 163 |
| MS.gene32703.t1 | AT4G30590 | 54.762 | 126 | 52 | 1 | 12 | 132 | 8 | 133 | 4.71e-48 | 155 |
| MS.gene32703.t1 | AT5G57920 | 53.719 | 121 | 55 | 1 | 22 | 141 | 18 | 138 | 4.26e-46 | 149 |
| MS.gene32703.t1 | AT5G57920 | 53.719 | 121 | 55 | 1 | 22 | 141 | 50 | 170 | 5.43e-46 | 150 |
| MS.gene32703.t1 | AT5G57920 | 53.782 | 119 | 54 | 1 | 24 | 141 | 19 | 137 | 1.76e-45 | 148 |
| MS.gene32703.t1 | AT2G23990 | 47.436 | 156 | 69 | 3 | 1 | 155 | 1 | 144 | 6.49e-42 | 140 |
| MS.gene32703.t1 | AT2G23990 | 42.286 | 175 | 69 | 4 | 1 | 155 | 1 | 163 | 1.82e-37 | 129 |
| MS.gene32703.t1 | AT1G48940 | 40.116 | 172 | 97 | 4 | 11 | 180 | 10 | 177 | 6.32e-34 | 118 |
| MS.gene32703.t1 | AT3G18590 | 49.580 | 119 | 55 | 3 | 12 | 128 | 12 | 127 | 1.63e-33 | 117 |
| MS.gene32703.t1 | AT3G20570 | 34.302 | 172 | 84 | 3 | 12 | 156 | 15 | 184 | 3.40e-32 | 115 |
| MS.gene32703.t1 | AT4G27520 | 43.919 | 148 | 70 | 3 | 12 | 159 | 16 | 150 | 4.94e-31 | 115 |
| MS.gene32703.t1 | AT5G53870 | 43.421 | 152 | 69 | 5 | 11 | 155 | 7 | 148 | 5.00e-30 | 113 |
| MS.gene32703.t1 | AT5G53870 | 43.421 | 152 | 69 | 5 | 11 | 155 | 7 | 148 | 5.94e-30 | 112 |
| MS.gene32703.t1 | AT5G14345 | 46.429 | 112 | 57 | 2 | 36 | 146 | 24 | 133 | 3.08e-29 | 105 |
| MS.gene32703.t1 | AT4G28365 | 37.342 | 158 | 85 | 6 | 12 | 158 | 11 | 165 | 4.48e-27 | 101 |
| MS.gene32703.t1 | AT4G32490 | 38.686 | 137 | 76 | 4 | 3 | 134 | 2 | 135 | 1.41e-26 | 100 |
| MS.gene32703.t1 | AT1G79800 | 43.810 | 105 | 55 | 3 | 25 | 128 | 32 | 133 | 5.44e-26 | 98.6 |
| MS.gene32703.t1 | AT1G64640 | 33.571 | 140 | 89 | 2 | 4 | 140 | 6 | 144 | 1.32e-22 | 89.7 |
| MS.gene32703.t1 | AT2G31050 | 36.765 | 136 | 82 | 2 | 10 | 145 | 11 | 142 | 1.45e-21 | 87.4 |
| MS.gene32703.t1 | AT2G32300 | 36.111 | 144 | 82 | 4 | 18 | 160 | 17 | 151 | 1.53e-20 | 85.9 |
| MS.gene32703.t1 | AT2G32300 | 36.111 | 144 | 82 | 4 | 18 | 160 | 47 | 181 | 2.88e-20 | 85.9 |
| MS.gene32703.t1 | AT2G26720 | 32.353 | 136 | 88 | 2 | 10 | 145 | 11 | 142 | 5.62e-20 | 83.6 |
| MS.gene32703.t1 | AT5G07475 | 29.412 | 187 | 114 | 7 | 6 | 180 | 3 | 183 | 1.29e-18 | 79.3 |
| MS.gene32703.t1 | AT3G60270 | 37.374 | 99 | 57 | 2 | 31 | 129 | 29 | 122 | 5.35e-16 | 72.4 |
| MS.gene32703.t1 | AT5G26330 | 33.721 | 86 | 57 | 0 | 49 | 134 | 43 | 128 | 4.15e-15 | 70.1 |
| MS.gene32703.t1 | AT1G72230 | 37.755 | 98 | 51 | 2 | 39 | 127 | 21 | 117 | 5.46e-15 | 69.7 |
| MS.gene32703.t1 | AT3G17675 | 29.839 | 124 | 76 | 3 | 10 | 127 | 9 | 127 | 2.79e-14 | 66.6 |
| MS.gene32703.t1 | AT5G20230 | 31.034 | 116 | 74 | 2 | 31 | 141 | 28 | 142 | 1.62e-13 | 65.9 |
| MS.gene32703.t1 | AT1G45063 | 32.031 | 128 | 82 | 3 | 2 | 128 | 4 | 127 | 5.33e-13 | 65.9 |
| MS.gene32703.t1 | AT1G45063 | 34.694 | 98 | 61 | 2 | 31 | 127 | 152 | 247 | 9.42e-13 | 65.1 |
| MS.gene32703.t1 | AT4G01380 | 34.545 | 110 | 68 | 4 | 35 | 142 | 79 | 186 | 7.25e-13 | 64.7 |
| MS.gene32703.t1 | AT3G27200 | 34.906 | 106 | 62 | 4 | 24 | 128 | 23 | 122 | 8.57e-13 | 63.5 |
| MS.gene32703.t1 | AT1G45063 | 32.031 | 128 | 82 | 3 | 2 | 128 | 4 | 127 | 9.55e-13 | 65.5 |
| MS.gene32703.t1 | AT1G45063 | 34.694 | 98 | 61 | 2 | 31 | 127 | 152 | 247 | 1.59e-12 | 65.1 |
| MS.gene32703.t1 | AT2G27035 | 27.451 | 153 | 91 | 5 | 29 | 180 | 30 | 163 | 1.14e-12 | 63.2 |
| MS.gene32703.t1 | AT3G60280 | 37.374 | 99 | 57 | 3 | 31 | 129 | 27 | 120 | 1.28e-12 | 63.9 |
| MS.gene32703.t1 | AT2G44790 | 40.964 | 83 | 46 | 2 | 49 | 129 | 45 | 126 | 7.62e-12 | 61.6 |
| MS.gene32703.t1 | AT1G22480 | 39.024 | 82 | 49 | 1 | 54 | 135 | 41 | 121 | 6.20e-11 | 58.5 |
Find 47 sgRNAs with CRISPR-Local
Find 52 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGGACTTGTGACTGTTC+TGG | 0.274010 | 3.1:-83792951 | MS.gene32703:CDS |
| TTGTTCTTGTTCCTTCTCTT+TGG | 0.278533 | 3.1:-83793495 | MS.gene32703:CDS |
| CCCATCATTGTAATGTTCAA+TGG | 0.374125 | 3.1:+83793174 | None:intergenic |
| CCATCATTGTAATGTTCAAT+GGG | 0.379061 | 3.1:+83793175 | None:intergenic |
| GGGACTGTTGGCTATTTATG+TGG | 0.381502 | 3.1:-83792930 | MS.gene32703:CDS |
| GCTCCACTGATGAAGTAAAA+TGG | 0.384841 | 3.1:+83793121 | None:intergenic |
| ACTGGACTTGTGACTGTTCT+GGG | 0.401738 | 3.1:-83792950 | MS.gene32703:CDS |
| CCCATTGAACATTACAATGA+TGG | 0.412359 | 3.1:-83793175 | MS.gene32703:CDS |
| TTCAAAGTCGGCGATCATCT+TGG | 0.440071 | 3.1:-83793369 | MS.gene32703:intron |
| TACTTCATCAGTGGAGCAAA+GGG | 0.460490 | 3.1:-83793115 | MS.gene32703:CDS |
| GGACCTTCTTCCAACTCTGC+TGG | 0.465938 | 3.1:+83793010 | None:intergenic |
| AGTGCGCCGGTGTTGCGAAC+TGG | 0.466338 | 3.1:-83792968 | MS.gene32703:CDS |
| CTTTGGTTTCTCTGCAGCTA+AGG | 0.473136 | 3.1:-83793478 | MS.gene32703:CDS |
| CTGCTAGTTGGTGCAACAGC+TGG | 0.474292 | 3.1:+83792989 | None:intergenic |
| GGACTGTTGGCTATTTATGT+GGG | 0.487905 | 3.1:-83792929 | MS.gene32703:CDS |
| AGTGAGTCTGCTTCAGATGA+TGG | 0.493397 | 3.1:+83793417 | None:intergenic |
| TGCACCATCTCCAGCAGAGT+TGG | 0.499713 | 3.1:-83793020 | MS.gene32703:CDS |
| TCTTCCAACTCTGCTGGAGA+TGG | 0.500018 | 3.1:+83793016 | None:intergenic |
| TGTGACTGTTCTGGGACTGT+TGG | 0.507080 | 3.1:-83792942 | MS.gene32703:CDS |
| AACTCTGCTGGAGATGGTGC+AGG | 0.510903 | 3.1:+83793022 | None:intergenic |
| TTTGCAGTTTGGAAATATGA+TGG | 0.513645 | 3.1:-83793259 | MS.gene32703:intron |
| AGCAGACTCACTCAACCAAT+GGG | 0.514967 | 3.1:-83793406 | MS.gene32703:CDS |
| AACACCGGCGCACTGCTAGT+TGG | 0.529681 | 3.1:+83792977 | None:intergenic |
| TCTCCAAAGAAAAGATCCAT+TGG | 0.532263 | 3.1:-83793052 | MS.gene32703:CDS |
| CCATTGAACATTACAATGAT+GGG | 0.540182 | 3.1:-83793174 | MS.gene32703:CDS |
| TTACTTCATCAGTGGAGCAA+AGG | 0.544859 | 3.1:-83793116 | MS.gene32703:CDS |
| AAGCAGACTCACTCAACCAA+TGG | 0.548958 | 3.1:-83793407 | MS.gene32703:CDS |
| GCAAAGGGACACTGTGAGCA+AGG | 0.567702 | 3.1:-83793100 | MS.gene32703:CDS |
| CTGATGAAGTAAAATGGTCC+AGG | 0.572076 | 3.1:+83793127 | None:intergenic |
| CAGTTTGGAAATATGATGGT+GGG | 0.580211 | 3.1:-83793255 | MS.gene32703:CDS |
| TGCACCAACTAGCAGTGCGC+CGG | 0.584450 | 3.1:-83792981 | MS.gene32703:CDS |
| GAAAAGTCTCGTTTCAAAGT+CGG | 0.587560 | 3.1:-83793381 | MS.gene32703:CDS |
| TCTCCAGCAGAGTTGGAAGA+AGG | 0.588093 | 3.1:-83793013 | MS.gene32703:CDS |
| ACAAGTCCAGTTCGCAACAC+CGG | 0.589779 | 3.1:+83792962 | None:intergenic |
| TGGTGCAGGTGAAACTCCAA+TGG | 0.600203 | 3.1:+83793036 | None:intergenic |
| GCAGTTTGGAAATATGATGG+TGG | 0.604799 | 3.1:-83793256 | MS.gene32703:intron |
| GCAGCTAAGGAACTATTGAT+CGG | 0.609191 | 3.1:-83793465 | MS.gene32703:CDS |
| AGGCAAGATAGATGCATGGA+AGG | 0.615286 | 3.1:-83793442 | MS.gene32703:CDS |
| CTGCAGAGAAACCAAAGAGA+AGG | 0.616684 | 3.1:+83793484 | None:intergenic |
| AAGGTAAAGCTAGACAGACC+TGG | 0.622619 | 3.1:-83793145 | MS.gene32703:CDS |
| CATCATTGTAATGTTCAATG+GGG | 0.626069 | 3.1:+83793176 | None:intergenic |
| TCGGAGGCAAGATAGATGCA+TGG | 0.669696 | 3.1:-83793446 | MS.gene32703:CDS |
| AGTTCTTGAGAACACAGCCA+TGG | 0.674329 | 3.1:+83793533 | None:intergenic |
| AGGACAAAAGCTGATTGTGG+TGG | 0.679977 | 3.1:-83793080 | MS.gene32703:CDS |
| GCTAAGGAACTATTGATCGG+AGG | 0.692252 | 3.1:-83793462 | MS.gene32703:CDS |
| GCAAGGACAAAAGCTGATTG+TGG | 0.718198 | 3.1:-83793083 | MS.gene32703:CDS |
| TTACAATGATGGGAACACGA+AGG | 0.756088 | 3.1:-83793164 | MS.gene32703:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATTTCCAAACTGCAAAACAA+AGG | + | chr3.1:83793184-83793203 | None:intergenic | 30.0% | |
| CATCATTGTAATGTTCAATG+GGG | + | chr3.1:83793274-83793293 | None:intergenic | 30.0% | |
| CCATCATTGTAATGTTCAAT+GGG | + | chr3.1:83793275-83793294 | None:intergenic | 30.0% | |
| CCATTGAACATTACAATGAT+GGG | - | chr3.1:83793273-83793292 | MS.gene32703:intron | 30.0% | |
| TTTGCAGTTTGGAAATATGA+TGG | - | chr3.1:83793188-83793207 | MS.gene32703:CDS | 30.0% | |
| !!! | TTTACCTTTGTTTTGCAGTT+TGG | - | chr3.1:83793177-83793196 | MS.gene32703:CDS | 30.0% |
| AGAAAAAGATGTGTCAGTGA+TGG | + | chr3.1:83793157-83793176 | None:intergenic | 35.0% | |
| CAGTTTGGAAATATGATGGT+GGG | - | chr3.1:83793192-83793211 | MS.gene32703:CDS | 35.0% | |
| CCCATCATTGTAATGTTCAA+TGG | + | chr3.1:83793276-83793295 | None:intergenic | 35.0% | |
| CCCATTGAACATTACAATGA+TGG | - | chr3.1:83793272-83793291 | MS.gene32703:intron | 35.0% | |
| GAAAAGTCTCGTTTCAAAGT+CGG | - | chr3.1:83793066-83793085 | MS.gene32703:CDS | 35.0% | |
| TCTCCAAAGAAAAGATCCAT+TGG | - | chr3.1:83793395-83793414 | MS.gene32703:CDS | 35.0% | |
| TTGTTCTTGTTCCTTCTCTT+TGG | - | chr3.1:83792952-83792971 | MS.gene32703:CDS | 35.0% | |
| ! | ACTCCAATGGATCTTTTCTT+TGG | + | chr3.1:83793401-83793420 | None:intergenic | 35.0% |
| CTGATGAAGTAAAATGGTCC+AGG | + | chr3.1:83793323-83793342 | None:intergenic | 40.0% | |
| GCAGCTAAGGAACTATTGAT+CGG | - | chr3.1:83792982-83793001 | MS.gene32703:CDS | 40.0% | |
| GCAGTTTGGAAATATGATGG+TGG | - | chr3.1:83793191-83793210 | MS.gene32703:CDS | 40.0% | |
| GCTCCACTGATGAAGTAAAA+TGG | + | chr3.1:83793329-83793348 | None:intergenic | 40.0% | |
| TACTTCATCAGTGGAGCAAA+GGG | - | chr3.1:83793332-83793351 | MS.gene32703:intron | 40.0% | |
| TTACTTCATCAGTGGAGCAA+AGG | - | chr3.1:83793331-83793350 | MS.gene32703:intron | 40.0% | |
| ! | GGACCATTTTACTTCATCAG+TGG | - | chr3.1:83793323-83793342 | MS.gene32703:intron | 40.0% |
| ! | GGACTGTTGGCTATTTATGT+GGG | - | chr3.1:83793518-83793537 | MS.gene32703:CDS | 40.0% |
| ! | TTACAATGATGGGAACACGA+AGG | - | chr3.1:83793283-83793302 | MS.gene32703:intron | 40.0% |
| AACTGGACTTGTGACTGTTC+TGG | - | chr3.1:83793496-83793515 | MS.gene32703:CDS | 45.0% | |
| AAGCAGACTCACTCAACCAA+TGG | - | chr3.1:83793040-83793059 | MS.gene32703:CDS | 45.0% | |
| AAGGTAAAGCTAGACAGACC+TGG | - | chr3.1:83793302-83793321 | MS.gene32703:intron | 45.0% | |
| ACTGGACTTGTGACTGTTCT+GGG | - | chr3.1:83793497-83793516 | MS.gene32703:CDS | 45.0% | |
| AGCAGACTCACTCAACCAAT+GGG | - | chr3.1:83793041-83793060 | MS.gene32703:CDS | 45.0% | |
| AGGACAAAAGCTGATTGTGG+TGG | - | chr3.1:83793367-83793386 | MS.gene32703:intron | 45.0% | |
| AGGCAAGATAGATGCATGGA+AGG | - | chr3.1:83793005-83793024 | MS.gene32703:CDS | 45.0% | |
| AGTGAGTCTGCTTCAGATGA+TGG | + | chr3.1:83793033-83793052 | None:intergenic | 45.0% | |
| CTGCAGAGAAACCAAAGAGA+AGG | + | chr3.1:83792966-83792985 | None:intergenic | 45.0% | |
| GCAAGGACAAAAGCTGATTG+TGG | - | chr3.1:83793364-83793383 | MS.gene32703:intron | 45.0% | |
| GCTAAGGAACTATTGATCGG+AGG | - | chr3.1:83792985-83793004 | MS.gene32703:CDS | 45.0% | |
| TTCAAAGTCGGCGATCATCT+TGG | - | chr3.1:83793078-83793097 | MS.gene32703:CDS | 45.0% | |
| ! | AACGAGACTTTTCTGCCCAT+TGG | + | chr3.1:83793059-83793078 | None:intergenic | 45.0% |
| ! | CTTTGGTTTCTCTGCAGCTA+AGG | - | chr3.1:83792969-83792988 | MS.gene32703:CDS | 45.0% |
| ! | GGGACTGTTGGCTATTTATG+TGG | - | chr3.1:83793517-83793536 | MS.gene32703:CDS | 45.0% |
| ACAAGTCCAGTTCGCAACAC+CGG | + | chr3.1:83793488-83793507 | None:intergenic | 50.0% | |
| TCGGAGGCAAGATAGATGCA+TGG | - | chr3.1:83793001-83793020 | MS.gene32703:CDS | 50.0% | |
| TCTCCAGCAGAGTTGGAAGA+AGG | - | chr3.1:83793434-83793453 | MS.gene32703:CDS | 50.0% | |
| TCTTCCAACTCTGCTGGAGA+TGG | + | chr3.1:83793434-83793453 | None:intergenic | 50.0% | |
| TGGTGCAGGTGAAACTCCAA+TGG | + | chr3.1:83793414-83793433 | None:intergenic | 50.0% | |
| !! | TGTGACTGTTCTGGGACTGT+TGG | - | chr3.1:83793505-83793524 | MS.gene32703:CDS | 50.0% |
| AACTCTGCTGGAGATGGTGC+AGG | + | chr3.1:83793428-83793447 | None:intergenic | 55.0% | |
| GCAAAGGGACACTGTGAGCA+AGG | - | chr3.1:83793347-83793366 | MS.gene32703:intron | 55.0% | |
| GGACCTTCTTCCAACTCTGC+TGG | + | chr3.1:83793440-83793459 | None:intergenic | 55.0% | |
| TGCACCATCTCCAGCAGAGT+TGG | - | chr3.1:83793427-83793446 | MS.gene32703:CDS | 55.0% | |
| ! | CTGCTAGTTGGTGCAACAGC+TGG | + | chr3.1:83793461-83793480 | None:intergenic | 55.0% |
| AACACCGGCGCACTGCTAGT+TGG | + | chr3.1:83793473-83793492 | None:intergenic | 60.0% | |
| TGCACCAACTAGCAGTGCGC+CGG | - | chr3.1:83793466-83793485 | MS.gene32703:CDS | 60.0% | |
| !! | AGTGCGCCGGTGTTGCGAAC+TGG | - | chr3.1:83793479-83793498 | MS.gene32703:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 83792916 | 83793553 | 83792916 | ID=MS.gene32703 |
| chr3.1 | mRNA | 83792916 | 83793553 | 83792916 | ID=MS.gene32703.t1;Parent=MS.gene32703 |
| chr3.1 | exon | 83793370 | 83793553 | 83793370 | ID=MS.gene32703.t1.exon1;Parent=MS.gene32703.t1 |
| chr3.1 | CDS | 83793370 | 83793553 | 83793370 | ID=cds.MS.gene32703.t1;Parent=MS.gene32703.t1 |
| chr3.1 | exon | 83792916 | 83793274 | 83792916 | ID=MS.gene32703.t1.exon2;Parent=MS.gene32703.t1 |
| chr3.1 | CDS | 83792916 | 83793274 | 83792916 | ID=cds.MS.gene32703.t1;Parent=MS.gene32703.t1 |
| Gene Sequence |
| Protein sequence |
