Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007484.t1 | XP_003625555.1 | 76.8 | 298 | 57 | 3 | 1 | 298 | 1 | 286 | 2.40E-91 | 345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007484.t1 | Q58FZ0 | 44.5 | 283 | 113 | 8 | 1 | 278 | 1 | 244 | 4.0e-34 | 146.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007484.t1 | G7L1N2 | 76.8 | 298 | 57 | 3 | 1 | 298 | 1 | 286 | 1.8e-91 | 345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007484 | MS.gene073830 | PPI |
| MS.gene30857 | MS.gene007484 | PPI |
| MS.gene018517 | MS.gene007484 | PPI |
| MS.gene029909 | MS.gene007484 | PPI |
| MS.gene007484 | MS.gene22481 | PPI |
| MS.gene007484 | MS.gene09786 | PPI |
| MS.gene007484 | MS.gene068551 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007484.t1 | MTR_7g100450 | 89.933 | 298 | 18 | 3 | 1 | 298 | 1 | 286 | 3.58e-164 | 457 |
| MS.gene007484.t1 | MTR_7g100450 | 90.909 | 242 | 16 | 2 | 1 | 242 | 1 | 236 | 5.74e-130 | 369 |
| MS.gene007484.t1 | MTR_1g067560 | 55.631 | 293 | 96 | 9 | 1 | 293 | 1 | 259 | 2.02e-87 | 262 |
| MS.gene007484.t1 | MTR_4g062450 | 33.214 | 280 | 119 | 8 | 1 | 278 | 1 | 214 | 1.34e-31 | 118 |
| MS.gene007484.t1 | MTR_6g086020 | 54.688 | 64 | 29 | 0 | 215 | 278 | 65 | 128 | 3.71e-21 | 87.4 |
| MS.gene007484.t1 | MTR_8g103820 | 53.125 | 64 | 30 | 0 | 215 | 278 | 66 | 129 | 1.63e-20 | 85.9 |
| MS.gene007484.t1 | MTR_7g013660 | 40.000 | 85 | 50 | 1 | 213 | 296 | 2 | 86 | 5.90e-14 | 67.8 |
| MS.gene007484.t1 | MTR_3g117890 | 46.377 | 69 | 35 | 1 | 215 | 281 | 26 | 94 | 5.71e-11 | 60.5 |
| MS.gene007484.t1 | MTR_4g073040 | 38.372 | 86 | 51 | 1 | 202 | 285 | 15 | 100 | 7.45e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007484.t1 | AT2G37390 | 40.283 | 283 | 125 | 8 | 1 | 278 | 1 | 244 | 1.68e-53 | 175 |
| MS.gene007484.t1 | AT2G37390 | 40.989 | 283 | 122 | 9 | 1 | 278 | 1 | 243 | 6.90e-53 | 174 |
| MS.gene007484.t1 | AT3G53530 | 37.367 | 281 | 125 | 7 | 1 | 278 | 1 | 233 | 2.63e-41 | 143 |
| MS.gene007484.t1 | AT3G53530 | 37.234 | 282 | 125 | 8 | 1 | 278 | 1 | 234 | 1.69e-39 | 139 |
| MS.gene007484.t1 | AT5G02600 | 52.555 | 137 | 45 | 3 | 165 | 281 | 180 | 316 | 6.00e-35 | 129 |
| MS.gene007484.t1 | AT5G02600 | 52.555 | 137 | 45 | 3 | 165 | 281 | 180 | 316 | 6.00e-35 | 129 |
| MS.gene007484.t1 | AT2G28660 | 69.014 | 71 | 22 | 0 | 208 | 278 | 176 | 246 | 1.10e-28 | 111 |
| MS.gene007484.t1 | AT3G24450 | 50.000 | 64 | 32 | 0 | 215 | 278 | 74 | 137 | 1.38e-16 | 75.5 |
| MS.gene007484.t1 | AT1G66240 | 43.038 | 79 | 42 | 2 | 202 | 278 | 20 | 97 | 1.16e-14 | 69.3 |
| MS.gene007484.t1 | AT3G56240 | 46.970 | 66 | 34 | 1 | 215 | 279 | 3 | 68 | 9.27e-14 | 67.0 |
| MS.gene007484.t1 | AT3G56240 | 46.970 | 66 | 34 | 1 | 215 | 279 | 3 | 68 | 9.27e-14 | 67.0 |
| MS.gene007484.t1 | AT5G27690 | 40.449 | 89 | 46 | 3 | 192 | 279 | 13 | 95 | 1.07e-12 | 68.2 |
Find 48 sgRNAs with CRISPR-Local
Find 116 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTGTTGTACTAGATTT+TGG | 0.170922 | 7.3:-12362666 | None:intergenic |
| ATTAGATTATGACCCTGTTT+TGG | 0.240827 | 7.3:+12362548 | MS.gene007484:CDS |
| CCAGAAGTTGCTTCATCAAT+TGG | 0.294671 | 7.3:+12363926 | MS.gene007484:CDS |
| GATTTGCATACCTTGCATTC+TGG | 0.322525 | 7.3:-12362892 | None:intergenic |
| ACCAACTACTGTAACCTTCT+TGG | 0.326525 | 7.3:-12363843 | None:intergenic |
| GCTTGGTGAGACAGTTTCTT+TGG | 0.328826 | 7.3:+12362518 | MS.gene007484:CDS |
| ATGGACAAGTTTAAGGTTGA+TGG | 0.338522 | 7.3:-12362259 | None:intergenic |
| AGGTGAAGACTGCACAAATT+TGG | 0.341639 | 7.3:+12363903 | MS.gene007484:CDS |
| TCTACCACCAAAGTGATTAA+TGG | 0.359645 | 7.3:-12362142 | None:intergenic |
| GTTGCAGATTGTGGTGTTAA+GGG | 0.363212 | 7.3:+12362821 | MS.gene007484:intron |
| TGTTGCAGATTGTGGTGTTA+AGG | 0.365637 | 7.3:+12362820 | MS.gene007484:intron |
| CCAATTGATGAAGCAACTTC+TGG | 0.381921 | 7.3:-12363926 | None:intergenic |
| CTTCTTAAAATACTATCAAC+TGG | 0.402151 | 7.3:-12362438 | None:intergenic |
| ACCTTAGTTAAACCCAAAAC+AGG | 0.426654 | 7.3:-12362561 | None:intergenic |
| AAGGTTGTGAAGGGAAGGTT+AGG | 0.448311 | 7.3:+12362859 | MS.gene007484:CDS |
| ATGATTAGTGTTAAGACATA+TGG | 0.448878 | 7.3:-12362088 | None:intergenic |
| ATGCTTGCCATTACGCTCAA+TGG | 0.459884 | 7.3:-12363875 | None:intergenic |
| GCCAAGAAGGTTACAGTAGT+TGG | 0.460899 | 7.3:+12363842 | MS.gene007484:CDS |
| GTGTCAGTGAGATCTCTTGC+TGG | 0.463146 | 7.3:-12362210 | None:intergenic |
| TCCAACACCATTAATCACTT+TGG | 0.465049 | 7.3:+12362135 | MS.gene007484:CDS |
| GGCTGCAAAGTCTATGTTGA+AGG | 0.474842 | 7.3:-12363822 | None:intergenic |
| GTTGCTTCATCAATTGGATC+TGG | 0.476518 | 7.3:+12363932 | MS.gene007484:CDS |
| GGTGAGACAGTTTCTTTGGA+TGG | 0.476989 | 7.3:+12362522 | MS.gene007484:CDS |
| CATAGACTTTGCAGCCAAGA+AGG | 0.492938 | 7.3:+12363829 | MS.gene007484:CDS |
| AGGGTTTCTCTACACTGTAA+AGG | 0.497170 | 7.3:+12362840 | MS.gene007484:CDS |
| TGGACAAGTTTAAGGTTGAT+GGG | 0.502719 | 7.3:-12362258 | None:intergenic |
| AACACCATTAATCACTTTGG+TGG | 0.517962 | 7.3:+12362138 | MS.gene007484:CDS |
| ACCAAAGTGATTAATGGTGT+TGG | 0.523108 | 7.3:-12362136 | None:intergenic |
| ACTTCGTCAAGATATTTGCT+TGG | 0.524728 | 7.3:+12362501 | MS.gene007484:CDS |
| GGAGGAGTGATTAAATCAGA+AGG | 0.533878 | 7.3:-12362477 | None:intergenic |
| GATGGGGTTGTGGCGATCAA+TGG | 0.538267 | 7.3:-12362166 | None:intergenic |
| AGTTTAAGGTTGATGGGTGA+AGG | 0.543572 | 7.3:-12362252 | None:intergenic |
| GTTAAGACATATGGCTGTTG+AGG | 0.547442 | 7.3:-12362079 | None:intergenic |
| GATCTGTGATGATGGGGTTG+TGG | 0.561276 | 7.3:-12362176 | None:intergenic |
| TGTAACTCCATTGAGCGTAA+TGG | 0.561591 | 7.3:+12363868 | MS.gene007484:CDS |
| CTGTAAAGGTTGTGAAGGGA+AGG | 0.564183 | 7.3:+12362854 | MS.gene007484:CDS |
| CTACACTGTAAAGGTTGTGA+AGG | 0.566064 | 7.3:+12362849 | MS.gene007484:CDS |
| AGGTTGATGGGTGAAGGAGA+AGG | 0.573141 | 7.3:-12362246 | None:intergenic |
| ATCTCACTGACACTGCTCCT+AGG | 0.576489 | 7.3:+12362220 | MS.gene007484:CDS |
| AAACATCTCTCCAGAATGCA+AGG | 0.579496 | 7.3:+12362882 | MS.gene007484:CDS |
| AGCAAATATCTTGACGAAGT+AGG | 0.587565 | 7.3:-12362498 | None:intergenic |
| CGTAATGGCAAGCATATCAA+AGG | 0.592668 | 7.3:+12363883 | MS.gene007484:CDS |
| AAATATCTTGACGAAGTAGG+AGG | 0.605384 | 7.3:-12362495 | None:intergenic |
| TACACTGTAAAGGTTGTGAA+GGG | 0.606760 | 7.3:+12362850 | MS.gene007484:CDS |
| GGTGAAGGAGAAGGTGACCT+AGG | 0.609366 | 7.3:-12362237 | None:intergenic |
| CCTTAGTTAAACCCAAAACA+GGG | 0.664376 | 7.3:-12362560 | None:intergenic |
| AAAATCTAGTACAACAAACC+AGG | 0.681480 | 7.3:+12362668 | MS.gene007484:CDS |
| GGAGTGATTAAATCAGAAGG+TGG | 0.685023 | 7.3:-12362474 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATCTTTAGTT+GGG | - | chr7.3:12363412-12363431 | None:intergenic | 15.0% |
| !! | AGGTTATATATGAATATTAT+TGG | + | chr7.3:12363115-12363134 | MS.gene007484:intron | 15.0% |
| !! | TACAAAATTTAATCTTTAGT+TGG | - | chr7.3:12363413-12363432 | None:intergenic | 15.0% |
| !! | TTTCACATATAAGAAAAATA+AGG | + | chr7.3:12363095-12363114 | MS.gene007484:intron | 15.0% |
| !!! | ACTAAAGATTAAATTTTGTA+TGG | + | chr7.3:12363413-12363432 | MS.gene007484:intron | 15.0% |
| !!! | TTAAGATACATTCTTTTAAA+TGG | - | chr7.3:12363215-12363234 | None:intergenic | 15.0% |
| !! | AAATGAAATAACCATGTTTA+TGG | + | chr7.3:12363716-12363735 | MS.gene007484:intron | 20.0% |
| !! | ACAAAAAAATAACGTTTAGA+AGG | - | chr7.3:12363066-12363085 | None:intergenic | 20.0% |
| !! | TATTTAATATCAAACACAAG+TGG | + | chr7.3:12363447-12363466 | MS.gene007484:intron | 20.0% |
| !!! | AACATGGATATAAATAGTTT+TGG | - | chr7.3:12363650-12363669 | None:intergenic | 20.0% |
| !!! | CTTTACAAACTAATTTTGTA+AGG | - | chr7.3:12363529-12363548 | None:intergenic | 20.0% |
| !!! | TAATTTTGTAAGGTTAAGTT+AGG | - | chr7.3:12363519-12363538 | None:intergenic | 20.0% |
| !!! | TATCGTTATTATTTTGTTGA+GGG | - | chr7.3:12363182-12363201 | None:intergenic | 20.0% |
| !!! | TTCAATATTTCTTTTTGCAT+TGG | + | chr7.3:12363775-12363794 | MS.gene007484:intron | 20.0% |
| !!! | TTTATATCCATGTTTTTACA+TGG | + | chr7.3:12363656-12363675 | MS.gene007484:intron | 20.0% |
| !!! | TTTTACAGAATCTTAATAAC+TGG | - | chr7.3:12362986-12363005 | None:intergenic | 20.0% |
| !!! | TTTTGCATTGGTAATTAAAT+GGG | + | chr7.3:12363787-12363806 | MS.gene007484:intron | 20.0% |
| !!! | TTTTTGCATTGGTAATTAAA+TGG | + | chr7.3:12363786-12363805 | MS.gene007484:intron | 20.0% |
| ! | AAAAAATAACGTTTAGAAGG+TGG | - | chr7.3:12363063-12363082 | None:intergenic | 25.0% |
| ! | AAAATTACCAAATCACTAAG+AGG | - | chr7.3:12363623-12363642 | None:intergenic | 25.0% |
| ! | AATATGACCTATTTAGTAGT+GGG | - | chr7.3:12363563-12363582 | None:intergenic | 25.0% |
| ! | ATGATTAGTGTTAAGACATA+TGG | - | chr7.3:12362091-12362110 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATACTATCAAC+TGG | - | chr7.3:12362441-12362460 | None:intergenic | 25.0% |
| ! | TAATCCATGTTATTATCAAG+AGG | - | chr7.3:12363600-12363619 | None:intergenic | 25.0% |
| ! | TTTCATTTCGAAAAATCGAT+CGG | - | chr7.3:12363704-12363723 | None:intergenic | 25.0% |
| ! | TTTGAATCCATGTAAAAACA+TGG | - | chr7.3:12363666-12363685 | None:intergenic | 25.0% |
| !! | GATTAAATTTTGTATGGAGA+TGG | + | chr7.3:12363419-12363438 | MS.gene007484:intron | 25.0% |
| !!! | ATAGTATTTTAAGAAGGAGT+AGG | + | chr7.3:12362445-12362464 | MS.gene007484:CDS | 25.0% |
| !!! | CAGTTGATAGTATTTTAAGA+AGG | + | chr7.3:12362439-12362458 | MS.gene007484:CDS | 25.0% |
| !!! | GTATCGTTATTATTTTGTTG+AGG | - | chr7.3:12363183-12363202 | None:intergenic | 25.0% |
| !!! | TAGTATTTTAAGAAGGAGTA+GGG | + | chr7.3:12362446-12362465 | MS.gene007484:CDS | 25.0% |
| AAAATCTAGTACAACAAACC+AGG | + | chr7.3:12362668-12362687 | MS.gene007484:CDS | 30.0% | |
| AATTACTCCCACTACTAAAT+AGG | + | chr7.3:12363553-12363572 | MS.gene007484:intron | 30.0% | |
| ATAAAACGCTACCATAAACA+TGG | - | chr7.3:12363730-12363749 | None:intergenic | 30.0% | |
| CTTCAATACCATTTGATTGA+TGG | - | chr7.3:12362947-12362966 | None:intergenic | 30.0% | |
| GAATATGACCTATTTAGTAG+TGG | - | chr7.3:12363564-12363583 | None:intergenic | 30.0% | |
| GTTATAGACTTATAGTAGCT+AGG | - | chr7.3:12363041-12363060 | None:intergenic | 30.0% | |
| TTTAACGAGGCTTATATCAA+AGG | + | chr7.3:12363293-12363312 | MS.gene007484:intron | 30.0% | |
| ! | ATTAGATTATGACCCTGTTT+TGG | + | chr7.3:12362548-12362567 | MS.gene007484:CDS | 30.0% |
| ! | TCTGTTGTTTGTTTCATGTT+TGG | + | chr7.3:12362777-12362796 | MS.gene007484:intron | 30.0% |
| ! | TTAGATTATGACCCTGTTTT+GGG | + | chr7.3:12362549-12362568 | MS.gene007484:CDS | 30.0% |
| !! | CTTTTTCATGGACAAGTTTA+AGG | - | chr7.3:12362269-12362288 | None:intergenic | 30.0% |
| !! | TCTAGACAATGTTTTTAACG+AGG | + | chr7.3:12363280-12363299 | MS.gene007484:intron | 30.0% |
| !!! | TGGTTTGTTGTACTAGATTT+TGG | - | chr7.3:12362669-12362688 | None:intergenic | 30.0% |
| !!! | TGTTTTTCTTGGCTTTTTCA+TGG | - | chr7.3:12362281-12362300 | None:intergenic | 30.0% |
| AAATATCTTGACGAAGTAGG+AGG | - | chr7.3:12362498-12362517 | None:intergenic | 35.0% | |
| AACACCATTAATCACTTTGG+TGG | + | chr7.3:12362138-12362157 | MS.gene007484:CDS | 35.0% | |
| ACCAAAGTGATTAATGGTGT+TGG | - | chr7.3:12362139-12362158 | None:intergenic | 35.0% | |
| ACCTTAGTTAAACCCAAAAC+AGG | - | chr7.3:12362564-12362583 | None:intergenic | 35.0% | |
| ACTTCGTCAAGATATTTGCT+TGG | + | chr7.3:12362501-12362520 | MS.gene007484:CDS | 35.0% | |
| AGCAAATATCTTGACGAAGT+AGG | - | chr7.3:12362501-12362520 | None:intergenic | 35.0% | |
| AGGCTTATATCAAAGGACAA+AGG | + | chr7.3:12363300-12363319 | MS.gene007484:intron | 35.0% | |
| ATAATGATCCATAACCAGTG+AGG | + | chr7.3:12363349-12363368 | MS.gene007484:intron | 35.0% | |
| CCTTAGTTAAACCCAAAACA+GGG | - | chr7.3:12362563-12362582 | None:intergenic | 35.0% | |
| TACACTGTAAAGGTTGTGAA+GGG | + | chr7.3:12362850-12362869 | MS.gene007484:CDS | 35.0% | |
| TATTATCAAGAGGCCTACAT+CGG | - | chr7.3:12363590-12363609 | None:intergenic | 35.0% | |
| TCCAACACCATTAATCACTT+TGG | + | chr7.3:12362135-12362154 | MS.gene007484:CDS | 35.0% | |
| TCTACCACCAAAGTGATTAA+TGG | - | chr7.3:12362145-12362164 | None:intergenic | 35.0% | |
| TGATCAGACCATCAATCAAA+TGG | + | chr7.3:12362936-12362955 | MS.gene007484:intron | 35.0% | |
| TGGATTACCTCTTAGTGATT+TGG | + | chr7.3:12363613-12363632 | MS.gene007484:intron | 35.0% | |
| ! | ATGGACAAGTTTAAGGTTGA+TGG | - | chr7.3:12362262-12362281 | None:intergenic | 35.0% |
| ! | ATTGGTAATTAAATGGGCAG+GGG | + | chr7.3:12363793-12363812 | MS.gene007484:intron | 35.0% |
| ! | CATTGGTAATTAAATGGGCA+GGG | + | chr7.3:12363792-12363811 | MS.gene007484:intron | 35.0% |
| ! | CTTTTTGGATCTGTGATGAT+GGG | - | chr7.3:12362186-12362205 | None:intergenic | 35.0% |
| ! | GTGAATTTTGTTGCAGATTG+TGG | + | chr7.3:12362812-12362831 | MS.gene007484:intron | 35.0% |
| ! | TAGGCCTCTTGATAATAACA+TGG | + | chr7.3:12363593-12363612 | MS.gene007484:intron | 35.0% |
| ! | TCTTTTTGGATCTGTGATGA+TGG | - | chr7.3:12362187-12362206 | None:intergenic | 35.0% |
| ! | TGGACAAGTTTAAGGTTGAT+GGG | - | chr7.3:12362261-12362280 | None:intergenic | 35.0% |
| !! | TTTTTGGATCTGTGATGATG+GGG | - | chr7.3:12362185-12362204 | None:intergenic | 35.0% |
| !!! | CTTTGAAGCAGTGTTTTTCT+TGG | - | chr7.3:12362292-12362311 | None:intergenic | 35.0% |
| !!! | TGTACTAGATTTTGGAACAG+AGG | - | chr7.3:12362661-12362680 | None:intergenic | 35.0% |
| AAACATCTCTCCAGAATGCA+AGG | + | chr7.3:12362882-12362901 | MS.gene007484:CDS | 40.0% | |
| ACCAACTACTGTAACCTTCT+TGG | - | chr7.3:12363846-12363865 | None:intergenic | 40.0% | |
| AGGGTTTCTCTACACTGTAA+AGG | + | chr7.3:12362840-12362859 | MS.gene007484:CDS | 40.0% | |
| AGGTGAAGACTGCACAAATT+TGG | + | chr7.3:12363903-12363922 | MS.gene007484:CDS | 40.0% | |
| CATGAAACAAACAACAGACC+TGG | - | chr7.3:12362775-12362794 | None:intergenic | 40.0% | |
| CCAATTGATGAAGCAACTTC+TGG | - | chr7.3:12363929-12363948 | None:intergenic | 40.0% | |
| CCAGAAGTTGCTTCATCAAT+TGG | + | chr7.3:12363926-12363945 | MS.gene007484:CDS | 40.0% | |
| CGTAATGGCAAGCATATCAA+AGG | + | chr7.3:12363883-12363902 | MS.gene007484:CDS | 40.0% | |
| CTACACTGTAAAGGTTGTGA+AGG | + | chr7.3:12362849-12362868 | MS.gene007484:CDS | 40.0% | |
| GAGAGAAAGAGATACTAACC+TGG | - | chr7.3:12362689-12362708 | None:intergenic | 40.0% | |
| GATTTGCATACCTTGCATTC+TGG | - | chr7.3:12362895-12362914 | None:intergenic | 40.0% | |
| GGAGGAGTGATTAAATCAGA+AGG | - | chr7.3:12362480-12362499 | None:intergenic | 40.0% | |
| GGAGTGATTAAATCAGAAGG+TGG | - | chr7.3:12362477-12362496 | None:intergenic | 40.0% | |
| GGTCATATTCTATCCGATGT+AGG | + | chr7.3:12363574-12363593 | MS.gene007484:intron | 40.0% | |
| GTTAAGACATATGGCTGTTG+AGG | - | chr7.3:12362082-12362101 | None:intergenic | 40.0% | |
| GTTGCTTCATCAATTGGATC+TGG | + | chr7.3:12363932-12363951 | MS.gene007484:CDS | 40.0% | |
| TGTAACTCCATTGAGCGTAA+TGG | + | chr7.3:12363868-12363887 | MS.gene007484:CDS | 40.0% | |
| ! | GCATTGGTAATTAAATGGGC+AGG | + | chr7.3:12363791-12363810 | MS.gene007484:intron | 40.0% |
| ! | GTTGCAGATTGTGGTGTTAA+GGG | + | chr7.3:12362821-12362840 | MS.gene007484:intron | 40.0% |
| ! | TCTCTTGCTGGAGTTCTTTT+TGG | - | chr7.3:12362201-12362220 | None:intergenic | 40.0% |
| ! | TGTTGCAGATTGTGGTGTTA+AGG | + | chr7.3:12362820-12362839 | MS.gene007484:intron | 40.0% |
| !! | AACTCTAAGACATGTCTTGC+AGG | - | chr7.3:12363487-12363506 | None:intergenic | 40.0% |
| !! | AGTTTAAGGTTGATGGGTGA+AGG | - | chr7.3:12362255-12362274 | None:intergenic | 40.0% |
| !!! | CCCTGTTTTGGGTTTAACTA+AGG | + | chr7.3:12362560-12362579 | MS.gene007484:CDS | 40.0% |
| AAGGTTGTGAAGGGAAGGTT+AGG | + | chr7.3:12362859-12362878 | MS.gene007484:CDS | 45.0% | |
| ATGCTTGCCATTACGCTCAA+TGG | - | chr7.3:12363878-12363897 | None:intergenic | 45.0% | |
| CATAGACTTTGCAGCCAAGA+AGG | + | chr7.3:12363829-12363848 | MS.gene007484:CDS | 45.0% | |
| CTGTAAAGGTTGTGAAGGGA+AGG | + | chr7.3:12362854-12362873 | MS.gene007484:CDS | 45.0% | |
| GAATGTGTACTCAAGCTCCT+CGG | + | chr7.3:12362739-12362758 | MS.gene007484:intron | 45.0% | |
| GCCAAGAAGGTTACAGTAGT+TGG | + | chr7.3:12363842-12363861 | MS.gene007484:CDS | 45.0% | |
| GGCTGCAAAGTCTATGTTGA+AGG | - | chr7.3:12363825-12363844 | None:intergenic | 45.0% | |
| GGTGAGACAGTTTCTTTGGA+TGG | + | chr7.3:12362522-12362541 | MS.gene007484:CDS | 45.0% | |
| TAACCAGTGAGGTTGGATCT+AGG | + | chr7.3:12363360-12363379 | MS.gene007484:intron | 45.0% | |
| TGATCCATAACCAGTGAGGT+TGG | + | chr7.3:12363353-12363372 | MS.gene007484:intron | 45.0% | |
| ! | AGATCCAACCTCACTGGTTA+TGG | - | chr7.3:12363360-12363379 | None:intergenic | 45.0% |
| ! | GCTTGGTGAGACAGTTTCTT+TGG | + | chr7.3:12362518-12362537 | MS.gene007484:CDS | 45.0% |
| ATCTCACTGACACTGCTCCT+AGG | + | chr7.3:12362220-12362239 | MS.gene007484:CDS | 50.0% | |
| GACCTGGTTATCATCAACCG+AGG | - | chr7.3:12362759-12362778 | None:intergenic | 50.0% | |
| GTGTCAGTGAGATCTCTTGC+TGG | - | chr7.3:12362213-12362232 | None:intergenic | 50.0% | |
| TCTCCTAGATCCAACCTCAC+TGG | - | chr7.3:12363366-12363385 | None:intergenic | 50.0% | |
| !! | AGGTTGATGGGTGAAGGAGA+AGG | - | chr7.3:12362249-12362268 | None:intergenic | 50.0% |
| !! | CTCCTCGGTTGATGATAACC+AGG | + | chr7.3:12362754-12362773 | MS.gene007484:intron | 50.0% |
| !! | GATCTGTGATGATGGGGTTG+TGG | - | chr7.3:12362179-12362198 | None:intergenic | 50.0% |
| GATGGGGTTGTGGCGATCAA+TGG | - | chr7.3:12362169-12362188 | None:intergenic | 55.0% | |
| GGTGAAGGAGAAGGTGACCT+AGG | - | chr7.3:12362240-12362259 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 12362045 | 12363988 | 12362045 | ID=MS.gene007484 |
| chr7.3 | mRNA | 12362045 | 12363988 | 12362045 | ID=MS.gene007484.t1;Parent=MS.gene007484 |
| chr7.3 | exon | 12362045 | 12362689 | 12362045 | ID=MS.gene007484.t1.exon1;Parent=MS.gene007484.t1 |
| chr7.3 | CDS | 12362045 | 12362689 | 12362045 | ID=cds.MS.gene007484.t1;Parent=MS.gene007484.t1 |
| chr7.3 | exon | 12362828 | 12362903 | 12362828 | ID=MS.gene007484.t1.exon2;Parent=MS.gene007484.t1 |
| chr7.3 | CDS | 12362828 | 12362903 | 12362828 | ID=cds.MS.gene007484.t1;Parent=MS.gene007484.t1 |
| chr7.3 | exon | 12363813 | 12363988 | 12363813 | ID=MS.gene007484.t1.exon3;Parent=MS.gene007484.t1 |
| chr7.3 | CDS | 12363813 | 12363988 | 12363813 | ID=cds.MS.gene007484.t1;Parent=MS.gene007484.t1 |
| Gene Sequence |
| Protein sequence |
