Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073830.t1 | XP_013468300.1 | 90.4 | 261 | 22 | 1 | 1 | 258 | 1 | 261 | 2.20E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073830.t1 | Q58FZ0 | 41.1 | 265 | 130 | 9 | 6 | 256 | 5 | 257 | 1.0e-33 | 145.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073830.t1 | A0A072VKM1 | 90.4 | 261 | 22 | 1 | 1 | 258 | 1 | 261 | 1.6e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene073830 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene052178 | MS.gene073830 | 0.806592 | 7.63E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene073830 | 0.822257 | 2.61E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene073830 | 0.801453 | 8.94E-49 | -1.69E-46 |
| MS.gene059518 | MS.gene073830 | 0.804372 | 2.23E-49 | -1.69E-46 |
| MS.gene059974 | MS.gene073830 | 0.801731 | 7.84E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22481 | MS.gene073830 | PPI |
| MS.gene073830 | MS.gene09786 | PPI |
| MS.gene09786 | MS.gene073830 | PPI |
| MS.gene007484 | MS.gene073830 | PPI |
| MS.gene30857 | MS.gene073830 | PPI |
| MS.gene018517 | MS.gene073830 | PPI |
| MS.gene029909 | MS.gene073830 | PPI |
| MS.gene068551 | MS.gene073830 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073830.t1 | MTR_1g067560 | 93.487 | 261 | 14 | 1 | 1 | 258 | 1 | 261 | 1.48e-171 | 473 |
| MS.gene073830.t1 | MTR_7g100450 | 56.044 | 273 | 93 | 7 | 1 | 246 | 1 | 273 | 6.56e-86 | 258 |
| MS.gene073830.t1 | MTR_7g100450 | 51.271 | 236 | 88 | 7 | 1 | 209 | 1 | 236 | 3.07e-59 | 188 |
| MS.gene073830.t1 | MTR_4g062450 | 38.976 | 254 | 106 | 9 | 1 | 245 | 1 | 214 | 3.27e-40 | 139 |
| MS.gene073830.t1 | MTR_6g086020 | 56.250 | 64 | 28 | 0 | 182 | 245 | 65 | 128 | 6.49e-23 | 91.3 |
| MS.gene073830.t1 | MTR_8g103820 | 56.250 | 64 | 28 | 0 | 182 | 245 | 66 | 129 | 1.57e-22 | 90.1 |
| MS.gene073830.t1 | MTR_7g013660 | 44.776 | 67 | 36 | 1 | 180 | 245 | 2 | 68 | 1.99e-14 | 68.6 |
| MS.gene073830.t1 | MTR_1g092670 | 42.029 | 69 | 39 | 1 | 180 | 247 | 2 | 70 | 6.70e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073830.t1 | AT2G37390 | 42.629 | 251 | 121 | 8 | 6 | 245 | 5 | 243 | 4.91e-51 | 167 |
| MS.gene073830.t1 | AT2G37390 | 42.063 | 252 | 122 | 8 | 6 | 245 | 5 | 244 | 1.13e-49 | 164 |
| MS.gene073830.t1 | AT3G53530 | 41.767 | 249 | 125 | 7 | 1 | 245 | 1 | 233 | 1.26e-47 | 158 |
| MS.gene073830.t1 | AT3G53530 | 41.600 | 250 | 125 | 8 | 1 | 245 | 1 | 234 | 6.17e-46 | 154 |
| MS.gene073830.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 176 | 248 | 244 | 316 | 6.04e-35 | 127 |
| MS.gene073830.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 176 | 248 | 244 | 316 | 6.04e-35 | 127 |
| MS.gene073830.t1 | AT2G28660 | 73.438 | 64 | 17 | 0 | 182 | 245 | 183 | 246 | 5.23e-27 | 105 |
| MS.gene073830.t1 | AT3G24450 | 51.562 | 64 | 31 | 0 | 182 | 245 | 74 | 137 | 9.52e-18 | 77.8 |
| MS.gene073830.t1 | AT1G66240 | 43.038 | 79 | 44 | 1 | 176 | 253 | 27 | 105 | 4.52e-16 | 72.4 |
| MS.gene073830.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 181 | 246 | 2 | 68 | 2.79e-14 | 68.2 |
| MS.gene073830.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 181 | 246 | 2 | 68 | 2.79e-14 | 68.2 |
| MS.gene073830.t1 | AT5G27690 | 46.032 | 63 | 33 | 1 | 185 | 246 | 33 | 95 | 1.93e-12 | 66.6 |
Find 51 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGAATCATTGATAAT+AGG | 0.154536 | 1.3:-47474208 | None:intergenic |
| TCCTCCTAATTAGATGAATT+TGG | 0.164221 | 1.3:-47475426 | None:intergenic |
| TTAGATGAATTTGGTTTCTT+TGG | 0.205681 | 1.3:-47475417 | None:intergenic |
| TTCTTGAATCATTGATAATA+GGG | 0.260643 | 1.3:-47474207 | None:intergenic |
| GGAGTAATTGAGTCAGAATT+TGG | 0.263951 | 1.3:-47474445 | None:intergenic |
| ATGCTTGCCAATACACTAAA+TGG | 0.274222 | 1.3:-47475347 | None:intergenic |
| AGGTGAAGAATGCACAATTT+TGG | 0.279496 | 1.3:+47475375 | MS.gene073830:CDS |
| AACTAAGGTTGATGATAAAA+AGG | 0.295490 | 1.3:+47474546 | MS.gene073830:CDS |
| ATCCAACCCTGCATCTAAAT+CGG | 0.376694 | 1.3:+47474591 | MS.gene073830:CDS |
| TTCCATTCTGAAAAGGAGAT+TGG | 0.404756 | 1.3:+47474417 | MS.gene073830:CDS |
| ACTTCTTCTTCCAAGCCAAT+TGG | 0.408471 | 1.3:+47474301 | MS.gene073830:CDS |
| GCAAAGAAGGTGACAATAGT+TGG | 0.411060 | 1.3:+47475314 | MS.gene073830:CDS |
| TTCTGTCTTGGCATTAACTA+AGG | 0.413181 | 1.3:+47474531 | MS.gene073830:CDS |
| TGTGACTCCATTTAGTGTAT+TGG | 0.414736 | 1.3:+47475340 | MS.gene073830:CDS |
| TTGAGCAGGTTGTAGTATTG+AGG | 0.431624 | 1.3:+47474982 | MS.gene073830:intron |
| CAAAGAAGGTGACAATAGTT+GGG | 0.432731 | 1.3:+47475315 | MS.gene073830:CDS |
| TTCGAATTATGATTCTGTCT+TGG | 0.443038 | 1.3:+47474519 | MS.gene073830:CDS |
| TGCAGCAAAATCTATGTTGA+AGG | 0.445020 | 1.3:-47475294 | None:intergenic |
| CGTGTTCTGTCCAATTGGCT+TGG | 0.447015 | 1.3:-47474311 | None:intergenic |
| GACTTTGCCTCCAAGTTGAA+TGG | 0.449627 | 1.3:-47474170 | None:intergenic |
| TGAGCAGGTTGTAGTATTGA+GGG | 0.452176 | 1.3:+47474983 | MS.gene073830:intron |
| GAGGAACCCGATTTAGATGC+AGG | 0.453934 | 1.3:-47474598 | None:intergenic |
| GGGTTTCTTTGCATTGCAAA+GGG | 0.475577 | 1.3:+47475003 | MS.gene073830:CDS |
| TCAAATACCATTCAACTTGG+AGG | 0.476391 | 1.3:+47474163 | MS.gene073830:CDS |
| TCCAACCCTGCATCTAAATC+GGG | 0.488661 | 1.3:+47474592 | MS.gene073830:CDS |
| CAATTGATTCCATTCTGAAA+AGG | 0.489678 | 1.3:+47474410 | MS.gene073830:CDS |
| AATCATTGATAATAGGGTTG+TGG | 0.501645 | 1.3:-47474201 | None:intergenic |
| TCTTCAAATACCATTCAACT+TGG | 0.505844 | 1.3:+47474160 | MS.gene073830:CDS |
| AGGGTTTCTTTGCATTGCAA+AGG | 0.507191 | 1.3:+47475002 | MS.gene073830:CDS |
| TATCCGAAAGATGAAAAGAA+TGG | 0.508564 | 1.3:+47474072 | None:intergenic |
| ACCCGATTTAGATGCAGGGT+TGG | 0.510035 | 1.3:-47474593 | None:intergenic |
| TTGGTGTCAGATCCAAGTGC+TGG | 0.516428 | 1.3:-47475398 | None:intergenic |
| TGCATTGCAAAGGGTGTGAA+GGG | 0.518392 | 1.3:+47475012 | MS.gene073830:CDS |
| TTGCATTGCAAAGGGTGTGA+AGG | 0.536259 | 1.3:+47475011 | MS.gene073830:CDS |
| ACATGGAGCAGTGATAGTCT+TGG | 0.541346 | 1.3:-47474239 | None:intergenic |
| GCTAAGACATATTGCTGTTG+AGG | 0.541448 | 1.3:-47474116 | None:intergenic |
| AATTGGCTTGGAAGAAGAAG+TGG | 0.548450 | 1.3:-47474299 | None:intergenic |
| AACAGCAATATGTCTTAGCA+TGG | 0.568544 | 1.3:+47474120 | MS.gene073830:CDS |
| TAAATCGGGTTCCTCAAGCC+AGG | 0.574328 | 1.3:+47474606 | MS.gene073830:CDS |
| AGGAACCCGATTTAGATGCA+GGG | 0.591898 | 1.3:-47474597 | None:intergenic |
| AAACACATCTCTAAAATGCA+AGG | 0.597452 | 1.3:+47475044 | MS.gene073830:CDS |
| GGTAGCTGAGAAGAAGAACA+TGG | 0.599271 | 1.3:-47474256 | None:intergenic |
| TGTATTGGCAAGCATATCAA+AGG | 0.601005 | 1.3:+47475355 | MS.gene073830:CDS |
| TGGCTTAGAAGAGTAACTGT+TGG | 0.609262 | 1.3:-47474389 | None:intergenic |
| AGCAAAATCTATGTTGAAGG+AGG | 0.618997 | 1.3:-47475291 | None:intergenic |
| TCTGACTCAATTACTCCACA+TGG | 0.643353 | 1.3:+47474451 | MS.gene073830:CDS |
| AAGAAAACTAACCTGGCTTG+AGG | 0.646869 | 1.3:-47474617 | None:intergenic |
| AAGGGTGTGAAGGGAAGCTG+AGG | 0.652756 | 1.3:+47475021 | MS.gene073830:CDS |
| AAAGAAGGTGACAATAGTTG+GGG | 0.656060 | 1.3:+47475316 | MS.gene073830:CDS |
| GCAAAAGAAGAAAAGTACAG+TGG | 0.673475 | 1.3:+47474357 | MS.gene073830:CDS |
| AAAGATCTAGTTGAACCATG+TGG | 0.741520 | 1.3:-47474466 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATACATTTTTTAAATGT+GGG | - | chr1.3:47475084-47475103 | None:intergenic | 10.0% |
| !!! | TTAAATACATTTTTTAAATG+TGG | - | chr1.3:47475085-47475104 | None:intergenic | 10.0% |
| !! | AGTTAAAGATTATTTAAAGA+TGG | - | chr1.3:47475171-47475190 | None:intergenic | 15.0% |
| !!! | AAATACATTTTTTAAATGTG+GGG | - | chr1.3:47475083-47475102 | None:intergenic | 15.0% |
| !!! | TTTAATCTTGTTGATTTTAT+GGG | + | chr1.3:47475259-47475278 | MS.gene073830:intron | 15.0% |
| !!! | TTTTAATCTTGTTGATTTTA+TGG | + | chr1.3:47475258-47475277 | MS.gene073830:intron | 15.0% |
| !! | AAAATTCATAAAACTAGTCA+TGG | - | chr1.3:47474936-47474955 | None:intergenic | 20.0% |
| !! | TAAATGCAGAAAATTAAGAT+TGG | - | chr1.3:47474823-47474842 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGCCACTTATTT+AGG | + | chr1.3:47474792-47474811 | MS.gene073830:intron | 20.0% |
| !!! | TTCTTGAATCATTGATAATA+GGG | - | chr1.3:47474210-47474229 | None:intergenic | 20.0% |
| ! | ACATTCTCTCAAATTATTAC+CGG | + | chr1.3:47474719-47474738 | MS.gene073830:intron | 25.0% |
| ! | ATTGGAAAATCCTAAATAAG+TGG | - | chr1.3:47474805-47474824 | None:intergenic | 25.0% |
| ! | ATTTGAGTAAATATTTGAGC+AGG | + | chr1.3:47474968-47474987 | MS.gene073830:intron | 25.0% |
| ! | TCTCATATTTGAATTCCATT+CGG | - | chr1.3:47475238-47475257 | None:intergenic | 25.0% |
| !! | CTTCTTGAATCATTGATAAT+AGG | - | chr1.3:47474211-47474230 | None:intergenic | 25.0% |
| !! | TTAGATGAATTTGGTTTCTT+TGG | - | chr1.3:47475420-47475439 | None:intergenic | 25.0% |
| !!! | AACTAAGGTTGATGATAAAA+AGG | + | chr1.3:47474546-47474565 | MS.gene073830:CDS | 25.0% |
| GAATATGAACTAAGCAAGTT+TGG | + | chr1.3:47474889-47474908 | MS.gene073830:intron | 30.0% | |
| GTGGCAAAAAATAAAACCTA+TGG | - | chr1.3:47474786-47474805 | None:intergenic | 30.0% | |
| TCTTCAAATACCATTCAACT+TGG | + | chr1.3:47474160-47474179 | MS.gene073830:CDS | 30.0% | |
| TTCGAATTATGATTCTGTCT+TGG | + | chr1.3:47474519-47474538 | MS.gene073830:CDS | 30.0% | |
| ! | AATCATTGATAATAGGGTTG+TGG | - | chr1.3:47474204-47474223 | None:intergenic | 30.0% |
| ! | CAATTGATTCCATTCTGAAA+AGG | + | chr1.3:47474410-47474429 | MS.gene073830:CDS | 30.0% |
| ! | CTTTTCAGAATGGAATCAAT+TGG | - | chr1.3:47474412-47474431 | None:intergenic | 30.0% |
| ! | GATAAAAAGGATCAAGTTGT+TGG | + | chr1.3:47474559-47474578 | MS.gene073830:CDS | 30.0% |
| !! | AAACACATCTCTAAAATGCA+AGG | + | chr1.3:47475044-47475063 | MS.gene073830:CDS | 30.0% |
| AAAGAAGGTGACAATAGTTG+GGG | + | chr1.3:47475316-47475335 | MS.gene073830:CDS | 35.0% | |
| AAAGATCTAGTTGAACCATG+TGG | - | chr1.3:47474469-47474488 | None:intergenic | 35.0% | |
| AACAGCAATATGTCTTAGCA+TGG | + | chr1.3:47474120-47474139 | MS.gene073830:CDS | 35.0% | |
| ACGAGAAAAGAAAACTAACC+TGG | - | chr1.3:47474627-47474646 | None:intergenic | 35.0% | |
| AGCAAAATCTATGTTGAAGG+AGG | - | chr1.3:47475294-47475313 | None:intergenic | 35.0% | |
| ATGCTTGCCAATACACTAAA+TGG | - | chr1.3:47475350-47475369 | None:intergenic | 35.0% | |
| ATTGGACAGAACACGAAAAA+TGG | + | chr1.3:47474319-47474338 | MS.gene073830:CDS | 35.0% | |
| CAAAGAAGGTGACAATAGTT+GGG | + | chr1.3:47475315-47475334 | MS.gene073830:CDS | 35.0% | |
| GACACTTTAAATTGGAAGGT+GGG | + | chr1.3:47474653-47474672 | MS.gene073830:intron | 35.0% | |
| GGAGTAATTGAGTCAGAATT+TGG | - | chr1.3:47474448-47474467 | None:intergenic | 35.0% | |
| GTAACACCGACACTTTAAAT+TGG | + | chr1.3:47474645-47474664 | MS.gene073830:intron | 35.0% | |
| TATGTCACACATTTACCGAA+TGG | + | chr1.3:47475220-47475239 | MS.gene073830:intron | 35.0% | |
| TCAAATACCATTCAACTTGG+AGG | + | chr1.3:47474163-47474182 | MS.gene073830:CDS | 35.0% | |
| TGCAGCAAAATCTATGTTGA+AGG | - | chr1.3:47475297-47475316 | None:intergenic | 35.0% | |
| TGTGACTCCATTTAGTGTAT+TGG | + | chr1.3:47475340-47475359 | MS.gene073830:CDS | 35.0% | |
| TTCTGTCTTGGCATTAACTA+AGG | + | chr1.3:47474531-47474550 | MS.gene073830:CDS | 35.0% | |
| ! | AACCAATCTCCTTTTCAGAA+TGG | - | chr1.3:47474422-47474441 | None:intergenic | 35.0% |
| ! | AAGAAGTGGTTTTCTTCTTG+GGG | - | chr1.3:47474288-47474307 | None:intergenic | 35.0% |
| ! | AGAAGAAGTGGTTTTCTTCT+TGG | - | chr1.3:47474290-47474309 | None:intergenic | 35.0% |
| ! | AGGTGAAGAATGCACAATTT+TGG | + | chr1.3:47475375-47475394 | MS.gene073830:CDS | 35.0% |
| ! | CACCTTCCAATTTAAAGTGT+CGG | - | chr1.3:47474654-47474673 | None:intergenic | 35.0% |
| ! | CATAGATTTTGCTGCAAAGA+AGG | + | chr1.3:47475301-47475320 | MS.gene073830:CDS | 35.0% |
| ! | CTGCATTTATTGCTTGCTAA+GGG | + | chr1.3:47474834-47474853 | MS.gene073830:intron | 35.0% |
| ! | GAAGAAGTGGTTTTCTTCTT+GGG | - | chr1.3:47474289-47474308 | None:intergenic | 35.0% |
| ! | GCAAAAGAAGAAAAGTACAG+TGG | + | chr1.3:47474357-47474376 | MS.gene073830:CDS | 35.0% |
| ! | TCTGCATTTATTGCTTGCTA+AGG | + | chr1.3:47474833-47474852 | MS.gene073830:intron | 35.0% |
| ! | TGTATTGGCAAGCATATCAA+AGG | + | chr1.3:47475355-47475374 | MS.gene073830:CDS | 35.0% |
| ! | TTCCATTCTGAAAAGGAGAT+TGG | + | chr1.3:47474417-47474436 | MS.gene073830:CDS | 35.0% |
| ! | TTTTTCGTGTTCTGTCCAAT+TGG | - | chr1.3:47474319-47474338 | None:intergenic | 35.0% |
| !! | CATCTCTAAAATGCAAGGTA+TGG | + | chr1.3:47475049-47475068 | MS.gene073830:intron | 35.0% |
| !!! | ATCTTGTTGATTTTATGGGC+AGG | + | chr1.3:47475263-47475282 | MS.gene073830:intron | 35.0% |
| ACTTCTTCTTCCAAGCCAAT+TGG | + | chr1.3:47474301-47474320 | MS.gene073830:CDS | 40.0% | |
| AGGGTTTCTTTGCATTGCAA+AGG | + | chr1.3:47475002-47475021 | MS.gene073830:CDS | 40.0% | |
| ATCCAACCCTGCATCTAAAT+CGG | + | chr1.3:47474591-47474610 | MS.gene073830:CDS | 40.0% | |
| CACCGACACTTTAAATTGGA+AGG | + | chr1.3:47474649-47474668 | MS.gene073830:intron | 40.0% | |
| CGACACTTTAAATTGGAAGG+TGG | + | chr1.3:47474652-47474671 | MS.gene073830:intron | 40.0% | |
| GATGGTTTCGTGAAGATTTC+AGG | - | chr1.3:47475153-47475172 | None:intergenic | 40.0% | |
| GCAAAGAAGGTGACAATAGT+TGG | + | chr1.3:47475314-47475333 | MS.gene073830:CDS | 40.0% | |
| GGGTTTCTTTGCATTGCAAA+GGG | + | chr1.3:47475003-47475022 | MS.gene073830:CDS | 40.0% | |
| TCTGACTCAATTACTCCACA+TGG | + | chr1.3:47474451-47474470 | MS.gene073830:CDS | 40.0% | |
| TGGCTTAGAAGAGTAACTGT+TGG | - | chr1.3:47474392-47474411 | None:intergenic | 40.0% | |
| TTGAGCAGGTTGTAGTATTG+AGG | + | chr1.3:47474982-47475001 | MS.gene073830:intron | 40.0% | |
| TTGGACACATTCAACACATG+TGG | + | chr1.3:47474694-47474713 | MS.gene073830:intron | 40.0% | |
| ! | AAGAAAACTAACCTGGCTTG+AGG | - | chr1.3:47474620-47474639 | None:intergenic | 40.0% |
| ! | GCTAAGACATATTGCTGTTG+AGG | - | chr1.3:47474119-47474138 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTTGGGGTCAAT+AGG | - | chr1.3:47474280-47474299 | None:intergenic | 40.0% |
| ! | TGAGCAGGTTGTAGTATTGA+GGG | + | chr1.3:47474983-47475002 | MS.gene073830:intron | 40.0% |
| !! | AATTGGCTTGGAAGAAGAAG+TGG | - | chr1.3:47474302-47474321 | None:intergenic | 40.0% |
| ACATGGAGCAGTGATAGTCT+TGG | - | chr1.3:47474242-47474261 | None:intergenic | 45.0% | |
| AGGAACCCGATTTAGATGCA+GGG | - | chr1.3:47474600-47474619 | None:intergenic | 45.0% | |
| GGTAGCTGAGAAGAAGAACA+TGG | - | chr1.3:47474259-47474278 | None:intergenic | 45.0% | |
| GTCTAGTGTCAATGCTCCAT+AGG | + | chr1.3:47474767-47474786 | MS.gene073830:intron | 45.0% | |
| TCCAACCCTGCATCTAAATC+GGG | + | chr1.3:47474592-47474611 | MS.gene073830:CDS | 45.0% | |
| TGAATGTGTCCAACCTGTGT+TGG | - | chr1.3:47474687-47474706 | None:intergenic | 45.0% | |
| ! | AGTGACGCAGCTTTTGTAGA+TGG | + | chr1.3:47474493-47474512 | MS.gene073830:CDS | 45.0% |
| ! | GACTTTGCCTCCAAGTTGAA+TGG | - | chr1.3:47474173-47474192 | None:intergenic | 45.0% |
| ! | TGCATTGCAAAGGGTGTGAA+GGG | + | chr1.3:47475012-47475031 | MS.gene073830:CDS | 45.0% |
| ! | TTACCGGTGTCAATGAGAAG+TGG | + | chr1.3:47474735-47474754 | MS.gene073830:intron | 45.0% |
| ! | TTGCATTGCAAAGGGTGTGA+AGG | + | chr1.3:47475011-47475030 | MS.gene073830:CDS | 45.0% |
| ! | TTGCCACTTCTCATTGACAC+CGG | - | chr1.3:47474741-47474760 | None:intergenic | 45.0% |
| ACCCGATTTAGATGCAGGGT+TGG | - | chr1.3:47474596-47474615 | None:intergenic | 50.0% | |
| CGTGTTCTGTCCAATTGGCT+TGG | - | chr1.3:47474314-47474333 | None:intergenic | 50.0% | |
| GAGGAACCCGATTTAGATGC+AGG | - | chr1.3:47474601-47474620 | None:intergenic | 50.0% | |
| TAAATCGGGTTCCTCAAGCC+AGG | + | chr1.3:47474606-47474625 | MS.gene073830:CDS | 50.0% | |
| !! | GCACAATTTTGGCCAGCACT+TGG | + | chr1.3:47475386-47475405 | MS.gene073830:CDS | 50.0% |
| !! | TTGGTGTCAGATCCAAGTGC+TGG | - | chr1.3:47475401-47475420 | None:intergenic | 50.0% |
| GTCCAACCTGTGTTGGACAC+TGG | - | chr1.3:47474680-47474699 | None:intergenic | 55.0% | |
| GTCCAGTGTCCAACACAGGT+TGG | + | chr1.3:47474675-47474694 | MS.gene073830:intron | 55.0% | |
| ! | AAGGGTGTGAAGGGAAGCTG+AGG | + | chr1.3:47475021-47475040 | MS.gene073830:CDS | 55.0% |
| GTGGGTCCAGTGTCCAACAC+AGG | + | chr1.3:47474671-47474690 | MS.gene073830:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 47474082 | 47475439 | 47474082 | ID=MS.gene073830 |
| chr1.3 | mRNA | 47474082 | 47475439 | 47474082 | ID=MS.gene073830.t1;Parent=MS.gene073830 |
| chr1.3 | exon | 47474082 | 47474627 | 47474082 | ID=MS.gene073830.t1.exon1;Parent=MS.gene073830.t1 |
| chr1.3 | CDS | 47474082 | 47474627 | 47474082 | ID=cds.MS.gene073830.t1;Parent=MS.gene073830.t1 |
| chr1.3 | exon | 47474990 | 47475065 | 47474990 | ID=MS.gene073830.t1.exon2;Parent=MS.gene073830.t1 |
| chr1.3 | CDS | 47474990 | 47475065 | 47474990 | ID=cds.MS.gene073830.t1;Parent=MS.gene073830.t1 |
| chr1.3 | exon | 47475285 | 47475439 | 47475285 | ID=MS.gene073830.t1.exon3;Parent=MS.gene073830.t1 |
| chr1.3 | CDS | 47475285 | 47475439 | 47475285 | ID=cds.MS.gene073830.t1;Parent=MS.gene073830.t1 |
| Gene Sequence |
| Protein sequence |