Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22481.t1 | XP_003625555.1 | 76.8 | 297 | 58 | 3 | 1 | 297 | 1 | 286 | 2.10E-90 | 342.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22481.t1 | Q58FZ0 | 44.3 | 282 | 114 | 8 | 1 | 277 | 1 | 244 | 2.3e-34 | 147.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22481.t1 | G7L1N2 | 76.8 | 297 | 58 | 3 | 1 | 297 | 1 | 286 | 1.5e-90 | 342.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene22481 | 0.813588 | 2.37E-51 | -1.69E-46 |
| MS.gene050156 | MS.gene22481 | 0.809983 | 1.45E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene22481 | 0.817158 | 3.81E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene22481 | 0.80233 | 5.91E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene22481 | 0.819123 | 1.37E-52 | -1.69E-46 |
| MS.gene051180 | MS.gene22481 | 0.812132 | 4.94E-51 | -1.69E-46 |
| MS.gene052012 | MS.gene22481 | 0.801374 | 9.28E-49 | -1.69E-46 |
| MS.gene052611 | MS.gene22481 | 0.81089 | 9.21E-51 | -1.69E-46 |
| MS.gene052863 | MS.gene22481 | 0.811181 | 7.96E-51 | -1.69E-46 |
| MS.gene053008 | MS.gene22481 | 0.848259 | 6.87E-60 | -1.69E-46 |
| MS.gene053074 | MS.gene22481 | 0.80525 | 1.46E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene22481 | 0.811018 | 8.64E-51 | -1.69E-46 |
| MS.gene054472 | MS.gene22481 | 0.809989 | 1.44E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene22481 | 0.809593 | 1.75E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene22481 | 0.811279 | 7.58E-51 | -1.69E-46 |
| MS.gene055358 | MS.gene22481 | 0.826183 | 3.12E-54 | -1.69E-46 |
| MS.gene055623 | MS.gene22481 | 0.809074 | 2.27E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene22481 | 0.804628 | 1.97E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene22481 | 0.823132 | 1.63E-53 | -1.69E-46 |
| MS.gene055926 | MS.gene22481 | 0.808176 | 3.52E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene22481 | 0.829595 | 4.71E-55 | -1.69E-46 |
| MS.gene056173 | MS.gene22481 | 0.809755 | 1.62E-50 | -1.69E-46 |
| MS.gene056552 | MS.gene22481 | 0.804436 | 2.16E-49 | -1.69E-46 |
| MS.gene056589 | MS.gene22481 | 0.802723 | 4.90E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene22481 | 0.831866 | 1.31E-55 | -1.69E-46 |
| MS.gene058636 | MS.gene22481 | 0.811711 | 6.11E-51 | -1.69E-46 |
| MS.gene059725 | MS.gene22481 | 0.829058 | 6.36E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene22481 | 0.832817 | 7.61E-56 | -1.69E-46 |
| MS.gene060683 | MS.gene22481 | 0.825226 | 5.26E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene22481 | 0.822932 | 1.82E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene22481 | 0.815468 | 9.10E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene22481 | 0.852064 | 5.90E-61 | -1.69E-46 |
| MS.gene060998 | MS.gene22481 | 0.820619 | 6.23E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene22481 | MS.gene073830 | PPI |
| MS.gene007484 | MS.gene22481 | PPI |
| MS.gene029909 | MS.gene22481 | PPI |
| MS.gene22481 | MS.gene09786 | PPI |
| MS.gene30857 | MS.gene22481 | PPI |
| MS.gene018517 | MS.gene22481 | PPI |
| MS.gene22481 | MS.gene068551 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22481.t1 | MTR_7g100450 | 89.899 | 297 | 19 | 3 | 1 | 297 | 1 | 286 | 3.21e-163 | 455 |
| MS.gene22481.t1 | MTR_7g100450 | 90.871 | 241 | 17 | 2 | 1 | 241 | 1 | 236 | 5.26e-129 | 367 |
| MS.gene22481.t1 | MTR_1g067560 | 55.479 | 292 | 97 | 9 | 1 | 292 | 1 | 259 | 5.35e-86 | 258 |
| MS.gene22481.t1 | MTR_4g062450 | 33.333 | 279 | 119 | 9 | 1 | 277 | 1 | 214 | 1.50e-31 | 118 |
| MS.gene22481.t1 | MTR_6g086020 | 54.688 | 64 | 29 | 0 | 214 | 277 | 65 | 128 | 3.53e-21 | 87.4 |
| MS.gene22481.t1 | MTR_8g103820 | 53.125 | 64 | 30 | 0 | 214 | 277 | 66 | 129 | 1.65e-20 | 85.9 |
| MS.gene22481.t1 | MTR_7g013660 | 40.964 | 83 | 48 | 1 | 214 | 295 | 4 | 86 | 5.39e-14 | 67.8 |
| MS.gene22481.t1 | MTR_3g117890 | 46.377 | 69 | 35 | 1 | 214 | 280 | 26 | 94 | 5.03e-11 | 60.5 |
| MS.gene22481.t1 | MTR_4g073040 | 38.372 | 86 | 51 | 1 | 201 | 284 | 15 | 100 | 6.25e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22481.t1 | AT2G37390 | 40.426 | 282 | 125 | 8 | 1 | 277 | 1 | 244 | 8.26e-54 | 176 |
| MS.gene22481.t1 | AT2G37390 | 41.135 | 282 | 122 | 9 | 1 | 277 | 1 | 243 | 3.36e-53 | 174 |
| MS.gene22481.t1 | AT3G53530 | 37.500 | 280 | 125 | 7 | 1 | 277 | 1 | 233 | 2.18e-41 | 144 |
| MS.gene22481.t1 | AT3G53530 | 37.367 | 281 | 125 | 8 | 1 | 277 | 1 | 234 | 1.49e-39 | 139 |
| MS.gene22481.t1 | AT5G02600 | 52.555 | 137 | 45 | 3 | 164 | 280 | 180 | 316 | 5.16e-35 | 129 |
| MS.gene22481.t1 | AT5G02600 | 52.555 | 137 | 45 | 3 | 164 | 280 | 180 | 316 | 5.16e-35 | 129 |
| MS.gene22481.t1 | AT2G28660 | 69.014 | 71 | 22 | 0 | 207 | 277 | 176 | 246 | 8.97e-29 | 111 |
| MS.gene22481.t1 | AT3G24450 | 50.000 | 64 | 32 | 0 | 214 | 277 | 74 | 137 | 1.28e-16 | 75.5 |
| MS.gene22481.t1 | AT1G66240 | 43.038 | 79 | 42 | 2 | 201 | 277 | 20 | 97 | 1.21e-14 | 69.3 |
| MS.gene22481.t1 | AT3G56240 | 46.970 | 66 | 34 | 1 | 214 | 278 | 3 | 68 | 8.90e-14 | 67.4 |
| MS.gene22481.t1 | AT3G56240 | 46.970 | 66 | 34 | 1 | 214 | 278 | 3 | 68 | 8.90e-14 | 67.4 |
| MS.gene22481.t1 | AT5G27690 | 40.449 | 89 | 46 | 3 | 191 | 278 | 13 | 95 | 9.57e-13 | 68.2 |
Find 47 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTTGTTGTACTAGATTT+TGG | 0.170922 | 7.4:+9778915 | None:intergenic |
| ATTAGATTATGACCCTGTTT+TGG | 0.240827 | 7.4:-9779033 | MS.gene22481:CDS |
| CCAGAAGTTGCTTCATCAAT+TGG | 0.294671 | 7.4:-9777731 | MS.gene22481:CDS |
| ATGGACAAGTTTAAGGTTGA+TGG | 0.299977 | 7.4:+9779319 | None:intergenic |
| GATTTGCATACCTTGCATTC+TGG | 0.322525 | 7.4:+9778689 | None:intergenic |
| ACCAACTACTGTAACCTTCT+TGG | 0.326525 | 7.4:+9777814 | None:intergenic |
| GCTTGGTGAGACAGTTTCTT+TGG | 0.328826 | 7.4:-9779063 | MS.gene22481:CDS |
| AGGTGAAGACTGCACAAATT+TGG | 0.341639 | 7.4:-9777754 | MS.gene22481:CDS |
| TCTACCACCAAAGTGATTAA+TGG | 0.359645 | 7.4:+9779436 | None:intergenic |
| GTTGCAGATTGTGGTGTTAA+GGG | 0.363212 | 7.4:-9778760 | MS.gene22481:intron |
| TGTTGCAGATTGTGGTGTTA+AGG | 0.365637 | 7.4:-9778761 | MS.gene22481:intron |
| CCAATTGATGAAGCAACTTC+TGG | 0.381921 | 7.4:+9777731 | None:intergenic |
| CTTCTTAAAATACTATCAAC+TGG | 0.402151 | 7.4:+9779143 | None:intergenic |
| ACCTTAGTTAAACCCAAAAC+AGG | 0.426654 | 7.4:+9779020 | None:intergenic |
| AAGGTTGTGAAGGGAAGGTT+AGG | 0.448311 | 7.4:-9778722 | MS.gene22481:CDS |
| ATGATTAGTGTTAAGACATA+TGG | 0.448878 | 7.4:+9779490 | None:intergenic |
| ATGCTTGCCATTACGCTCAA+TGG | 0.459884 | 7.4:+9777782 | None:intergenic |
| AGTTTAAGGTTGATGGATGA+AGG | 0.459919 | 7.4:+9779326 | None:intergenic |
| GCCAAGAAGGTTACAGTAGT+TGG | 0.460899 | 7.4:-9777815 | MS.gene22481:CDS |
| GTGTCAGTGAGATCTCTTGC+TGG | 0.463146 | 7.4:+9779368 | None:intergenic |
| TCCAACACCATTAATCACTT+TGG | 0.465049 | 7.4:-9779443 | MS.gene22481:CDS |
| GGCTGCAAAGTCTATGTTGA+AGG | 0.474842 | 7.4:+9777835 | None:intergenic |
| GTTGCTTCATCAATTGGATC+TGG | 0.476518 | 7.4:-9777725 | MS.gene22481:CDS |
| GGTGAGACAGTTTCTTTGGA+TGG | 0.476989 | 7.4:-9779059 | MS.gene22481:CDS |
| CATAGACTTTGCAGCCAAGA+AGG | 0.492938 | 7.4:-9777828 | MS.gene22481:CDS |
| AGGGTTTCTCTACACTGTAA+AGG | 0.497170 | 7.4:-9778741 | MS.gene22481:CDS |
| AACACCATTAATCACTTTGG+TGG | 0.517962 | 7.4:-9779440 | MS.gene22481:CDS |
| ACCAAAGTGATTAATGGTGT+TGG | 0.523108 | 7.4:+9779442 | None:intergenic |
| ACTTCGTCAAGATATTTGCT+TGG | 0.524728 | 7.4:-9779080 | MS.gene22481:CDS |
| GGAGGAGTGATTAAATCAGA+AGG | 0.533878 | 7.4:+9779104 | None:intergenic |
| GATGGGGTTGTGGCGATCAA+TGG | 0.538267 | 7.4:+9779412 | None:intergenic |
| GTTAAGACATATGGCTGTTG+AGG | 0.547442 | 7.4:+9779499 | None:intergenic |
| GATCTGTGATGATGGGGTTG+TGG | 0.561276 | 7.4:+9779402 | None:intergenic |
| TGTAACTCCATTGAGCGTAA+TGG | 0.561591 | 7.4:-9777789 | MS.gene22481:CDS |
| CTGTAAAGGTTGTGAAGGGA+AGG | 0.564183 | 7.4:-9778727 | MS.gene22481:CDS |
| CTACACTGTAAAGGTTGTGA+AGG | 0.566064 | 7.4:-9778732 | MS.gene22481:CDS |
| AGGTTGATGGATGAAGGAGA+AGG | 0.576354 | 7.4:+9779332 | None:intergenic |
| ATCTCACTGACACTGCTCCT+AGG | 0.576489 | 7.4:-9779358 | MS.gene22481:CDS |
| AAACATCTCTCCAGAATGCA+AGG | 0.579496 | 7.4:-9778699 | MS.gene22481:intron |
| AGCAAATATCTTGACGAAGT+AGG | 0.587565 | 7.4:+9779083 | None:intergenic |
| CGTAATGGCAAGCATATCAA+AGG | 0.592668 | 7.4:-9777774 | MS.gene22481:CDS |
| AAATATCTTGACGAAGTAGG+AGG | 0.605384 | 7.4:+9779086 | None:intergenic |
| TACACTGTAAAGGTTGTGAA+GGG | 0.606760 | 7.4:-9778731 | MS.gene22481:CDS |
| GATGAAGGAGAAGGTGACCT+AGG | 0.609366 | 7.4:+9779341 | None:intergenic |
| CCTTAGTTAAACCCAAAACA+GGG | 0.664376 | 7.4:+9779021 | None:intergenic |
| AAAATCTAGTACAACAAACC+AGG | 0.681480 | 7.4:-9778913 | MS.gene22481:intron |
| GGAGTGATTAAATCAGAAGG+TGG | 0.685023 | 7.4:+9779107 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAATTTAATCTTTAGTT+GGG | + | chr7.4:9779055-9779074 | None:intergenic | 15.0% |
| !! | AGGTTATATATGAATATTAT+TGG | - | chr7.4:9778758-9778777 | MS.gene22481:intron | 15.0% |
| !! | TACAAAATTTAATCTTTAGT+TGG | + | chr7.4:9779056-9779075 | None:intergenic | 15.0% |
| !! | TTTCACATATAAGAAAAATA+AGG | - | chr7.4:9778738-9778757 | MS.gene22481:CDS | 15.0% |
| !!! | ACTAAAGATTAAATTTTGTA+TGG | - | chr7.4:9779056-9779075 | MS.gene22481:CDS | 15.0% |
| !!! | TTAAGATACATTCTTTTAAA+TGG | + | chr7.4:9778858-9778877 | None:intergenic | 15.0% |
| !! | AAATGAAATAACCATGTTTA+TGG | - | chr7.4:9779283-9779302 | MS.gene22481:CDS | 20.0% |
| !! | ACAAAAAAATAACGTTTAGA+AGG | + | chr7.4:9778709-9778728 | None:intergenic | 20.0% |
| !! | ATTTAATATCAAACACAAGT+GGG | - | chr7.4:9779091-9779110 | MS.gene22481:CDS | 20.0% |
| !! | TATTTAATATCAAACACAAG+TGG | - | chr7.4:9779090-9779109 | MS.gene22481:CDS | 20.0% |
| !!! | CTTTACAAACTAATTTTGTA+AGG | + | chr7.4:9779172-9779191 | None:intergenic | 20.0% |
| !!! | TAATTTTGTAAGGTTAAGTT+AGG | + | chr7.4:9779162-9779181 | None:intergenic | 20.0% |
| !!! | TATCGTTATTATTTTGTTGA+GGG | + | chr7.4:9778825-9778844 | None:intergenic | 20.0% |
| !!! | TTCAATATTTCTTTTTGCAT+TGG | - | chr7.4:9779342-9779361 | MS.gene22481:CDS | 20.0% |
| !!! | TTTTACAGAATCTTAATAAC+TGG | + | chr7.4:9778629-9778648 | None:intergenic | 20.0% |
| !!! | TTTTGCATTGGTAATTAAAT+GGG | - | chr7.4:9779354-9779373 | MS.gene22481:CDS | 20.0% |
| !!! | TTTTTGCATTGGTAATTAAA+TGG | - | chr7.4:9779353-9779372 | MS.gene22481:CDS | 20.0% |
| ! | AAAAAATAACGTTTAGAAGG+TGG | + | chr7.4:9778706-9778725 | None:intergenic | 25.0% |
| ! | AATATGACCTATTTAGTAGT+GGG | + | chr7.4:9779206-9779225 | None:intergenic | 25.0% |
| ! | ATGATTAGTGTTAAGACATA+TGG | + | chr7.4:9777737-9777756 | None:intergenic | 25.0% |
| ! | CTTCTTAAAATACTATCAAC+TGG | + | chr7.4:9778084-9778103 | None:intergenic | 25.0% |
| ! | TGATAATAAAAAGAAAGCTC+AGG | - | chr7.4:9778230-9778249 | MS.gene22481:intron | 25.0% |
| ! | TTTCATTTCGAAAAATCGAT+CGG | + | chr7.4:9779271-9779290 | None:intergenic | 25.0% |
| ! | TTTGAATCCATGTAAAAACA+TGG | + | chr7.4:9779233-9779252 | None:intergenic | 25.0% |
| !! | GATTAAATTTTGTATGGAGA+TGG | - | chr7.4:9779062-9779081 | MS.gene22481:CDS | 25.0% |
| !!! | ATAGTATTTTAAGAAGGAGT+AGG | - | chr7.4:9778088-9778107 | MS.gene22481:intron | 25.0% |
| !!! | ATTCTATCCATGTTTTTACA+TGG | - | chr7.4:9779223-9779242 | MS.gene22481:CDS | 25.0% |
| !!! | CAGTTGATAGTATTTTAAGA+AGG | - | chr7.4:9778082-9778101 | MS.gene22481:intron | 25.0% |
| !!! | GTATCGTTATTATTTTGTTG+AGG | + | chr7.4:9778826-9778845 | None:intergenic | 25.0% |
| !!! | TAGTATTTTAAGAAGGAGTA+GGG | - | chr7.4:9778089-9778108 | MS.gene22481:intron | 25.0% |
| AAAATCTAGTACAACAAACC+AGG | - | chr7.4:9778311-9778330 | MS.gene22481:intron | 30.0% | |
| AATTACTCCCACTACTAAAT+AGG | - | chr7.4:9779196-9779215 | MS.gene22481:CDS | 30.0% | |
| ATAAAACGCTACCATAAACA+TGG | + | chr7.4:9779297-9779316 | None:intergenic | 30.0% | |
| CTTCAATACCATTTGATTGA+TGG | + | chr7.4:9778590-9778609 | None:intergenic | 30.0% | |
| GAATATGACCTATTTAGTAG+TGG | + | chr7.4:9779207-9779226 | None:intergenic | 30.0% | |
| GTTATAGACTTATAGTAGCT+AGG | + | chr7.4:9778684-9778703 | None:intergenic | 30.0% | |
| TTTAACGAGGCTTATATCAA+AGG | - | chr7.4:9778936-9778955 | MS.gene22481:CDS | 30.0% | |
| ! | ATTAGATTATGACCCTGTTT+TGG | - | chr7.4:9778191-9778210 | MS.gene22481:intron | 30.0% |
| ! | TCTGTTGTTTGTTTCATGTT+TGG | - | chr7.4:9778420-9778439 | MS.gene22481:intron | 30.0% |
| ! | TTAGATTATGACCCTGTTTT+GGG | - | chr7.4:9778192-9778211 | MS.gene22481:intron | 30.0% |
| !! | CTTTTTCATGGACAAGTTTA+AGG | + | chr7.4:9777915-9777934 | None:intergenic | 30.0% |
| !! | TCTAGACAATGTTTTTAACG+AGG | - | chr7.4:9778923-9778942 | MS.gene22481:CDS | 30.0% |
| !!! | TGGTTTGTTGTACTAGATTT+TGG | + | chr7.4:9778312-9778331 | None:intergenic | 30.0% |
| !!! | TGTTTTTCTTGGCTTTTTCA+TGG | + | chr7.4:9777927-9777946 | None:intergenic | 30.0% |
| AAATATCTTGACGAAGTAGG+AGG | + | chr7.4:9778141-9778160 | None:intergenic | 35.0% | |
| AACACCATTAATCACTTTGG+TGG | - | chr7.4:9777784-9777803 | MS.gene22481:CDS | 35.0% | |
| ACCAAAGTGATTAATGGTGT+TGG | + | chr7.4:9777785-9777804 | None:intergenic | 35.0% | |
| ACCTTAGTTAAACCCAAAAC+AGG | + | chr7.4:9778207-9778226 | None:intergenic | 35.0% | |
| ACTTCGTCAAGATATTTGCT+TGG | - | chr7.4:9778144-9778163 | MS.gene22481:intron | 35.0% | |
| AGCAAATATCTTGACGAAGT+AGG | + | chr7.4:9778144-9778163 | None:intergenic | 35.0% | |
| AGGCTTATATCAAAGGACAA+AGG | - | chr7.4:9778943-9778962 | MS.gene22481:CDS | 35.0% | |
| ATAATGATCCATAACCAGTG+AGG | - | chr7.4:9778992-9779011 | MS.gene22481:CDS | 35.0% | |
| CCTTAGTTAAACCCAAAACA+GGG | + | chr7.4:9778206-9778225 | None:intergenic | 35.0% | |
| TACACTGTAAAGGTTGTGAA+GGG | - | chr7.4:9778493-9778512 | MS.gene22481:intron | 35.0% | |
| TCCAACACCATTAATCACTT+TGG | - | chr7.4:9777781-9777800 | MS.gene22481:CDS | 35.0% | |
| TCTACCACCAAAGTGATTAA+TGG | + | chr7.4:9777791-9777810 | None:intergenic | 35.0% | |
| TGATCAGACCATCAATCAAA+TGG | - | chr7.4:9778579-9778598 | MS.gene22481:intron | 35.0% | |
| ! | ATGGACAAGTTTAAGGTTGA+TGG | + | chr7.4:9777908-9777927 | None:intergenic | 35.0% |
| ! | ATTGGTAATTAAATGGGCAG+GGG | - | chr7.4:9779360-9779379 | MS.gene22481:CDS | 35.0% |
| ! | CATTGGTAATTAAATGGGCA+GGG | - | chr7.4:9779359-9779378 | MS.gene22481:CDS | 35.0% |
| ! | CTTTTTGGATCTGTGATGAT+GGG | + | chr7.4:9777832-9777851 | None:intergenic | 35.0% |
| ! | GTGAATTTTGTTGCAGATTG+TGG | - | chr7.4:9778455-9778474 | MS.gene22481:intron | 35.0% |
| ! | TCTTTTTGGATCTGTGATGA+TGG | + | chr7.4:9777833-9777852 | None:intergenic | 35.0% |
| !! | AGTTTAAGGTTGATGGATGA+AGG | + | chr7.4:9777901-9777920 | None:intergenic | 35.0% |
| !! | TTTTTGGATCTGTGATGATG+GGG | + | chr7.4:9777831-9777850 | None:intergenic | 35.0% |
| !!! | CTTTGAAGCAGTGTTTTTCT+TGG | + | chr7.4:9777938-9777957 | None:intergenic | 35.0% |
| !!! | TGTACTAGATTTTGGAACAG+AGG | + | chr7.4:9778304-9778323 | None:intergenic | 35.0% |
| AAACATCTCTCCAGAATGCA+AGG | - | chr7.4:9778525-9778544 | MS.gene22481:intron | 40.0% | |
| ACCAACTACTGTAACCTTCT+TGG | + | chr7.4:9779413-9779432 | None:intergenic | 40.0% | |
| AGGGTTTCTCTACACTGTAA+AGG | - | chr7.4:9778483-9778502 | MS.gene22481:intron | 40.0% | |
| AGGTGAAGACTGCACAAATT+TGG | - | chr7.4:9779470-9779489 | MS.gene22481:CDS | 40.0% | |
| CATGAAACAAACAACAGACC+TGG | + | chr7.4:9778418-9778437 | None:intergenic | 40.0% | |
| CCAATTGATGAAGCAACTTC+TGG | + | chr7.4:9779496-9779515 | None:intergenic | 40.0% | |
| CCAGAAGTTGCTTCATCAAT+TGG | - | chr7.4:9779493-9779512 | MS.gene22481:CDS | 40.0% | |
| CGTAATGGCAAGCATATCAA+AGG | - | chr7.4:9779450-9779469 | MS.gene22481:CDS | 40.0% | |
| CTACACTGTAAAGGTTGTGA+AGG | - | chr7.4:9778492-9778511 | MS.gene22481:intron | 40.0% | |
| GAGAGAAAGAGATACTAACC+TGG | + | chr7.4:9778332-9778351 | None:intergenic | 40.0% | |
| GATTTGCATACCTTGCATTC+TGG | + | chr7.4:9778538-9778557 | None:intergenic | 40.0% | |
| GGAGGAGTGATTAAATCAGA+AGG | + | chr7.4:9778123-9778142 | None:intergenic | 40.0% | |
| GGAGTGATTAAATCAGAAGG+TGG | + | chr7.4:9778120-9778139 | None:intergenic | 40.0% | |
| GTTAAGACATATGGCTGTTG+AGG | + | chr7.4:9777728-9777747 | None:intergenic | 40.0% | |
| GTTGCTTCATCAATTGGATC+TGG | - | chr7.4:9779499-9779518 | MS.gene22481:CDS | 40.0% | |
| TGTAACTCCATTGAGCGTAA+TGG | - | chr7.4:9779435-9779454 | MS.gene22481:CDS | 40.0% | |
| ! | GCATTGGTAATTAAATGGGC+AGG | - | chr7.4:9779358-9779377 | MS.gene22481:CDS | 40.0% |
| ! | GTTGCAGATTGTGGTGTTAA+GGG | - | chr7.4:9778464-9778483 | MS.gene22481:intron | 40.0% |
| ! | TCTCTTGCTGGAGTTCTTTT+TGG | + | chr7.4:9777847-9777866 | None:intergenic | 40.0% |
| ! | TGTTGCAGATTGTGGTGTTA+AGG | - | chr7.4:9778463-9778482 | MS.gene22481:intron | 40.0% |
| !! | AACTCTAAGACATGTCTTGC+AGG | + | chr7.4:9779130-9779149 | None:intergenic | 40.0% |
| !!! | CCCTGTTTTGGGTTTAACTA+AGG | - | chr7.4:9778203-9778222 | MS.gene22481:intron | 40.0% |
| AAGGTTGTGAAGGGAAGGTT+AGG | - | chr7.4:9778502-9778521 | MS.gene22481:intron | 45.0% | |
| ATGCTTGCCATTACGCTCAA+TGG | + | chr7.4:9779445-9779464 | None:intergenic | 45.0% | |
| CATAGACTTTGCAGCCAAGA+AGG | - | chr7.4:9779396-9779415 | MS.gene22481:CDS | 45.0% | |
| CTGTAAAGGTTGTGAAGGGA+AGG | - | chr7.4:9778497-9778516 | MS.gene22481:intron | 45.0% | |
| GAATGTGTACTCAAGCTCCT+CGG | - | chr7.4:9778382-9778401 | MS.gene22481:intron | 45.0% | |
| GCCAAGAAGGTTACAGTAGT+TGG | - | chr7.4:9779409-9779428 | MS.gene22481:CDS | 45.0% | |
| GGCTGCAAAGTCTATGTTGA+AGG | + | chr7.4:9779392-9779411 | None:intergenic | 45.0% | |
| GGTGAGACAGTTTCTTTGGA+TGG | - | chr7.4:9778165-9778184 | MS.gene22481:intron | 45.0% | |
| TAACCAGTGAGGTTGGATCT+AGG | - | chr7.4:9779003-9779022 | MS.gene22481:CDS | 45.0% | |
| TGATCCATAACCAGTGAGGT+TGG | - | chr7.4:9778996-9779015 | MS.gene22481:CDS | 45.0% | |
| ! | AGATCCAACCTCACTGGTTA+TGG | + | chr7.4:9779003-9779022 | None:intergenic | 45.0% |
| ! | GCTTGGTGAGACAGTTTCTT+TGG | - | chr7.4:9778161-9778180 | MS.gene22481:intron | 45.0% |
| !! | AGGTTGATGGATGAAGGAGA+AGG | + | chr7.4:9777895-9777914 | None:intergenic | 45.0% |
| ATCTCACTGACACTGCTCCT+AGG | - | chr7.4:9777866-9777885 | MS.gene22481:intron | 50.0% | |
| GACCTGGTTATCATCAACCG+AGG | + | chr7.4:9778402-9778421 | None:intergenic | 50.0% | |
| GATGAAGGAGAAGGTGACCT+AGG | + | chr7.4:9777886-9777905 | None:intergenic | 50.0% | |
| GTGTCAGTGAGATCTCTTGC+TGG | + | chr7.4:9777859-9777878 | None:intergenic | 50.0% | |
| TCTCCTAGATCCAACCTCAC+TGG | + | chr7.4:9779009-9779028 | None:intergenic | 50.0% | |
| !! | CTCCTCGGTTGATGATAACC+AGG | - | chr7.4:9778397-9778416 | MS.gene22481:intron | 50.0% |
| !! | GATCTGTGATGATGGGGTTG+TGG | + | chr7.4:9777825-9777844 | None:intergenic | 50.0% |
| GATGGGGTTGTGGCGATCAA+TGG | + | chr7.4:9777815-9777834 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 9777691 | 9779555 | 9777691 | ID=MS.gene22481 |
| chr7.4 | mRNA | 9777691 | 9779555 | 9777691 | ID=MS.gene22481.t1;Parent=MS.gene22481 |
| chr7.4 | exon | 9778914 | 9779555 | 9778914 | ID=MS.gene22481.t1.exon1;Parent=MS.gene22481.t1 |
| chr7.4 | CDS | 9778914 | 9779555 | 9778914 | ID=cds.MS.gene22481.t1;Parent=MS.gene22481.t1 |
| chr7.4 | exon | 9778700 | 9778775 | 9778700 | ID=MS.gene22481.t1.exon2;Parent=MS.gene22481.t1 |
| chr7.4 | CDS | 9778700 | 9778775 | 9778700 | ID=cds.MS.gene22481.t1;Parent=MS.gene22481.t1 |
| chr7.4 | exon | 9777691 | 9777866 | 9777691 | ID=MS.gene22481.t1.exon3;Parent=MS.gene22481.t1 |
| chr7.4 | CDS | 9777691 | 9777866 | 9777691 | ID=cds.MS.gene22481.t1;Parent=MS.gene22481.t1 |
| Gene Sequence |
| Protein sequence |
