Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30857.t1 | XP_013468300.1 | 91.6 | 261 | 20 | 1 | 1 | 259 | 1 | 261 | 2.30E-122 | 448.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30857.t1 | Q58FZ0 | 41.4 | 266 | 129 | 10 | 6 | 257 | 5 | 257 | 1.7e-33 | 144.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30857.t1 | A0A072VKM1 | 91.6 | 261 | 20 | 1 | 1 | 259 | 1 | 261 | 1.7e-122 | 448.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene30857 | MS.gene018517 | PPI |
MS.gene30857 | MS.gene09786 | PPI |
MS.gene30857 | MS.gene029909 | PPI |
MS.gene30857 | MS.gene007484 | PPI |
MS.gene30857 | MS.gene068551 | PPI |
MS.gene30857 | MS.gene073830 | PPI |
MS.gene018517 | MS.gene30857 | PPI |
MS.gene30857 | MS.gene22481 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30857.t1 | MTR_1g067560 | 95.019 | 261 | 11 | 1 | 1 | 259 | 1 | 261 | 9.80e-175 | 481 |
MS.gene30857.t1 | MTR_7g100450 | 57.875 | 273 | 89 | 8 | 1 | 247 | 1 | 273 | 1.03e-85 | 257 |
MS.gene30857.t1 | MTR_7g100450 | 52.966 | 236 | 85 | 8 | 1 | 210 | 1 | 236 | 4.84e-59 | 187 |
MS.gene30857.t1 | MTR_4g062450 | 39.216 | 255 | 105 | 9 | 1 | 246 | 1 | 214 | 2.63e-41 | 142 |
MS.gene30857.t1 | MTR_6g086020 | 56.250 | 64 | 28 | 0 | 183 | 246 | 65 | 128 | 7.45e-23 | 91.3 |
MS.gene30857.t1 | MTR_8g103820 | 56.250 | 64 | 28 | 0 | 183 | 246 | 66 | 129 | 1.67e-22 | 90.1 |
MS.gene30857.t1 | MTR_7g013660 | 44.776 | 67 | 36 | 1 | 181 | 246 | 2 | 68 | 2.24e-14 | 68.6 |
MS.gene30857.t1 | MTR_1g092670 | 42.029 | 69 | 39 | 1 | 181 | 248 | 2 | 70 | 6.72e-13 | 63.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene30857.t1 | AT2G37390 | 42.857 | 252 | 120 | 9 | 6 | 246 | 5 | 243 | 4.75e-51 | 167 |
MS.gene30857.t1 | AT2G37390 | 42.292 | 253 | 121 | 9 | 6 | 246 | 5 | 244 | 1.19e-49 | 164 |
MS.gene30857.t1 | AT3G53530 | 41.569 | 255 | 118 | 9 | 1 | 246 | 1 | 233 | 2.54e-46 | 155 |
MS.gene30857.t1 | AT3G53530 | 41.406 | 256 | 118 | 10 | 1 | 246 | 1 | 234 | 1.64e-44 | 150 |
MS.gene30857.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 177 | 249 | 244 | 316 | 5.42e-35 | 128 |
MS.gene30857.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 177 | 249 | 244 | 316 | 5.42e-35 | 128 |
MS.gene30857.t1 | AT2G28660 | 73.438 | 64 | 17 | 0 | 183 | 246 | 183 | 246 | 4.49e-27 | 105 |
MS.gene30857.t1 | AT3G24450 | 51.562 | 64 | 31 | 0 | 183 | 246 | 74 | 137 | 9.69e-18 | 77.8 |
MS.gene30857.t1 | AT1G66240 | 43.038 | 79 | 44 | 1 | 177 | 254 | 27 | 105 | 4.60e-16 | 72.4 |
MS.gene30857.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 182 | 247 | 2 | 68 | 2.72e-14 | 68.2 |
MS.gene30857.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 182 | 247 | 2 | 68 | 2.72e-14 | 68.2 |
MS.gene30857.t1 | AT5G27690 | 46.032 | 63 | 33 | 1 | 186 | 247 | 33 | 95 | 1.83e-12 | 66.6 |
Find 51 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTGAATCATTGATAAT+AGG | 0.154536 | 1.1:-49733776 | None:intergenic |
TCCTCCTAATTAGATGAATT+TGG | 0.164221 | 1.1:-49734997 | None:intergenic |
TTAGATGAATTTGGTTTCTT+TGG | 0.205681 | 1.1:-49734988 | None:intergenic |
TTCTTGAATCATTGATAATA+GGG | 0.260643 | 1.1:-49733775 | None:intergenic |
GGAGTAATTGAGTCAGAATT+TGG | 0.263951 | 1.1:-49734016 | None:intergenic |
ATGCTTGCCAATACACTAAA+TGG | 0.274222 | 1.1:-49734918 | None:intergenic |
AGGTGAAGAATGCACAATTT+TGG | 0.279496 | 1.1:+49734946 | MS.gene30857:CDS |
AACTAAGGTTGATGATAAAA+AGG | 0.295490 | 1.1:+49734117 | MS.gene30857:CDS |
ATCCAACCCTGCATCTAAAT+CGG | 0.376694 | 1.1:+49734162 | MS.gene30857:CDS |
TTCCATTCTGAAAAGGAGAT+TGG | 0.404756 | 1.1:+49733988 | MS.gene30857:CDS |
TCTTCTTCTTCCAAGCCAAT+TGG | 0.409571 | 1.1:+49733872 | MS.gene30857:CDS |
GCAAAGAAGGTGACAATAGT+TGG | 0.411060 | 1.1:+49734885 | MS.gene30857:CDS |
TTCTGTCTTGGCATTAACTA+AGG | 0.413181 | 1.1:+49734102 | MS.gene30857:CDS |
TGTGACTCCATTTAGTGTAT+TGG | 0.414736 | 1.1:+49734911 | MS.gene30857:CDS |
CATGTTCTGTCCAATTGGCT+TGG | 0.427254 | 1.1:-49733882 | None:intergenic |
TTGAGCAGGTTGTAGTATTG+AGG | 0.431624 | 1.1:+49734553 | MS.gene30857:intron |
CAAAGAAGGTGACAATAGTT+GGG | 0.432731 | 1.1:+49734886 | MS.gene30857:CDS |
TTCGAATTATGATTCTGTCT+TGG | 0.443038 | 1.1:+49734090 | MS.gene30857:CDS |
TGCAGCAAAATCTATGTTGA+AGG | 0.445020 | 1.1:-49734865 | None:intergenic |
GACTTTGCCTCCAAGTTGAA+TGG | 0.449627 | 1.1:-49733738 | None:intergenic |
TGAGCAGGTTGTAGTATTGA+GGG | 0.452176 | 1.1:+49734554 | MS.gene30857:intron |
GAGGAACCCGATTTAGATGC+AGG | 0.453934 | 1.1:-49734169 | None:intergenic |
GGGTTTCTTTGCATTGCAAA+GGG | 0.475577 | 1.1:+49734574 | MS.gene30857:CDS |
TCCAACCCTGCATCTAAATC+GGG | 0.488661 | 1.1:+49734163 | MS.gene30857:CDS |
CAATTGATTCCATTCTGAAA+AGG | 0.489678 | 1.1:+49733981 | MS.gene30857:CDS |
AATCATTGATAATAGGGTTG+TGG | 0.501645 | 1.1:-49733769 | None:intergenic |
ACAAGGAGCAGTGATAGTCT+TGG | 0.502397 | 1.1:-49733807 | None:intergenic |
TCAAATACCATTCAACTTGG+AGG | 0.505409 | 1.1:+49733731 | MS.gene30857:CDS |
AGGGTTTCTTTGCATTGCAA+AGG | 0.507191 | 1.1:+49734573 | MS.gene30857:CDS |
TATCCAAAAGATGAAAAGAA+TGG | 0.508564 | 1.1:+49733640 | None:intergenic |
ACCCGATTTAGATGCAGGGT+TGG | 0.510035 | 1.1:-49734164 | None:intergenic |
TTGGTGTCAGATCCAAGTGC+TGG | 0.516428 | 1.1:-49734969 | None:intergenic |
TGCATTGCAAAGGGTGTGAA+GGG | 0.518392 | 1.1:+49734583 | MS.gene30857:CDS |
TCTTCAAATACCATTCAACT+TGG | 0.534861 | 1.1:+49733728 | MS.gene30857:CDS |
TTGCATTGCAAAGGGTGTGA+AGG | 0.536259 | 1.1:+49734582 | MS.gene30857:CDS |
GCTAAGACATATTGCTGTTG+AGG | 0.541448 | 1.1:-49733684 | None:intergenic |
TGGCTTGGAAGAAGAAGAAG+TGG | 0.558993 | 1.1:-49733867 | None:intergenic |
AACAGCAATATGTCTTAGCA+TGG | 0.568544 | 1.1:+49733688 | MS.gene30857:CDS |
TAAATCGGGTTCCTCAAGCC+AGG | 0.574328 | 1.1:+49734177 | MS.gene30857:CDS |
AGGAACCCGATTTAGATGCA+GGG | 0.591898 | 1.1:-49734168 | None:intergenic |
AAACACATCTCTAAAATGCA+AGG | 0.597452 | 1.1:+49734615 | MS.gene30857:CDS |
TGTATTGGCAAGCATATCAA+AGG | 0.601005 | 1.1:+49734926 | MS.gene30857:CDS |
TGGCTTAGAAGAGTAACTGT+TGG | 0.609262 | 1.1:-49733960 | None:intergenic |
AGCAAAATCTATGTTGAAGG+AGG | 0.618997 | 1.1:-49734862 | None:intergenic |
GGTAGCTGAGAAGAAGAACA+AGG | 0.627415 | 1.1:-49733824 | None:intergenic |
TCTGACTCAATTACTCCACA+TGG | 0.643353 | 1.1:+49734022 | MS.gene30857:CDS |
AAGAAAACTAACCTGGCTTG+AGG | 0.646869 | 1.1:-49734188 | None:intergenic |
AAGGGTGTGAAGGGAAGCTG+AGG | 0.652756 | 1.1:+49734592 | MS.gene30857:CDS |
AAAGAAGGTGACAATAGTTG+GGG | 0.656060 | 1.1:+49734887 | MS.gene30857:CDS |
GCAAAAGAAGAAAAGTACAG+TGG | 0.667428 | 1.1:+49733928 | MS.gene30857:CDS |
AAAGATCTAGTTGAACCATG+TGG | 0.741520 | 1.1:-49734037 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAATACATTTTTTAAATGT+GGG | - | chr1.1:49734655-49734674 | None:intergenic | 10.0% |
!!! | TTAAATACATTTTTTAAATG+TGG | - | chr1.1:49734656-49734675 | None:intergenic | 10.0% |
!!! | AAATACATTTTTTAAATGTG+GGG | - | chr1.1:49734654-49734673 | None:intergenic | 15.0% |
!!! | TTTAATCTTGTTGATTTTAT+GGG | + | chr1.1:49734830-49734849 | MS.gene30857:intron | 15.0% |
!!! | TTTTAATCTTGTTGATTTTA+TGG | + | chr1.1:49734829-49734848 | MS.gene30857:intron | 15.0% |
!! | AAAATTCATAAAACTAGTCA+TGG | - | chr1.1:49734507-49734526 | None:intergenic | 20.0% |
!! | AGTGAAAGATTATTTAAAGA+TGG | - | chr1.1:49734742-49734761 | None:intergenic | 20.0% |
!! | TAAATGCAGAAAATTAAGAT+TGG | - | chr1.1:49734394-49734413 | None:intergenic | 20.0% |
!!! | TTATTTTTTGCCACTTATTT+AGG | + | chr1.1:49734363-49734382 | MS.gene30857:intron | 20.0% |
!!! | TTCTTGAATCATTGATAATA+GGG | - | chr1.1:49733778-49733797 | None:intergenic | 20.0% |
! | ACATTCTCTCAAATTATTAC+CGG | + | chr1.1:49734290-49734309 | MS.gene30857:intron | 25.0% |
! | ATTGGAAAATCCTAAATAAG+TGG | - | chr1.1:49734376-49734395 | None:intergenic | 25.0% |
! | ATTTGAGTAAATATTTGAGC+AGG | + | chr1.1:49734539-49734558 | MS.gene30857:intron | 25.0% |
! | TCTCATATTTGAATTCCATT+CGG | - | chr1.1:49734809-49734828 | None:intergenic | 25.0% |
!! | CTTCTTGAATCATTGATAAT+AGG | - | chr1.1:49733779-49733798 | None:intergenic | 25.0% |
!! | TTAGATGAATTTGGTTTCTT+TGG | - | chr1.1:49734991-49735010 | None:intergenic | 25.0% |
!!! | AACTAAGGTTGATGATAAAA+AGG | + | chr1.1:49734117-49734136 | MS.gene30857:CDS | 25.0% |
ATTGGACAGAACATGAAAAA+TGG | + | chr1.1:49733890-49733909 | MS.gene30857:CDS | 30.0% | |
GTGGCAAAAAATAAAACCTA+TGG | - | chr1.1:49734357-49734376 | None:intergenic | 30.0% | |
TCTTCAAATACCATTCAACT+TGG | + | chr1.1:49733728-49733747 | MS.gene30857:CDS | 30.0% | |
TTCGAATTATGATTCTGTCT+TGG | + | chr1.1:49734090-49734109 | MS.gene30857:CDS | 30.0% | |
! | AATCATTGATAATAGGGTTG+TGG | - | chr1.1:49733772-49733791 | None:intergenic | 30.0% |
! | CAATTGATTCCATTCTGAAA+AGG | + | chr1.1:49733981-49734000 | MS.gene30857:CDS | 30.0% |
! | CTTTTCAGAATGGAATCAAT+TGG | - | chr1.1:49733983-49734002 | None:intergenic | 30.0% |
! | GATAAAAAGGATCAAGTTGT+TGG | + | chr1.1:49734130-49734149 | MS.gene30857:CDS | 30.0% |
! | TTTTTCATGTTCTGTCCAAT+TGG | - | chr1.1:49733890-49733909 | None:intergenic | 30.0% |
!! | AAACACATCTCTAAAATGCA+AGG | + | chr1.1:49734615-49734634 | MS.gene30857:CDS | 30.0% |
AAAGAAGGTGACAATAGTTG+GGG | + | chr1.1:49734887-49734906 | MS.gene30857:CDS | 35.0% | |
AAAGATCTAGTTGAACCATG+TGG | - | chr1.1:49734040-49734059 | None:intergenic | 35.0% | |
AACAGCAATATGTCTTAGCA+TGG | + | chr1.1:49733688-49733707 | MS.gene30857:CDS | 35.0% | |
ACGAGAAAAGAAAACTAACC+TGG | - | chr1.1:49734198-49734217 | None:intergenic | 35.0% | |
AGCAAAATCTATGTTGAAGG+AGG | - | chr1.1:49734865-49734884 | None:intergenic | 35.0% | |
ATGCTTGCCAATACACTAAA+TGG | - | chr1.1:49734921-49734940 | None:intergenic | 35.0% | |
CAAAGAAGGTGACAATAGTT+GGG | + | chr1.1:49734886-49734905 | MS.gene30857:CDS | 35.0% | |
GAATGTGAACTAAGCAAGTT+TGG | + | chr1.1:49734460-49734479 | MS.gene30857:intron | 35.0% | |
GACACTTTAAATTGGAAGGT+GGG | + | chr1.1:49734224-49734243 | MS.gene30857:intron | 35.0% | |
GGAGTAATTGAGTCAGAATT+TGG | - | chr1.1:49734019-49734038 | None:intergenic | 35.0% | |
GTAACACCGACACTTTAAAT+TGG | + | chr1.1:49734216-49734235 | MS.gene30857:intron | 35.0% | |
TATGTCACACATTTACCGAA+TGG | + | chr1.1:49734791-49734810 | MS.gene30857:intron | 35.0% | |
TCAAATACCATTCAACTTGG+AGG | + | chr1.1:49733731-49733750 | MS.gene30857:CDS | 35.0% | |
TGCAGCAAAATCTATGTTGA+AGG | - | chr1.1:49734868-49734887 | None:intergenic | 35.0% | |
TGTGACTCCATTTAGTGTAT+TGG | + | chr1.1:49734911-49734930 | MS.gene30857:CDS | 35.0% | |
TTCTGTCTTGGCATTAACTA+AGG | + | chr1.1:49734102-49734121 | MS.gene30857:CDS | 35.0% | |
! | AACCAATCTCCTTTTCAGAA+TGG | - | chr1.1:49733993-49734012 | None:intergenic | 35.0% |
! | AAGAAGTGGTTTTCTTCTTG+GGG | - | chr1.1:49733856-49733875 | None:intergenic | 35.0% |
! | AGAAGAAGTGGTTTTCTTCT+TGG | - | chr1.1:49733858-49733877 | None:intergenic | 35.0% |
! | AGGTGAAGAATGCACAATTT+TGG | + | chr1.1:49734946-49734965 | MS.gene30857:CDS | 35.0% |
! | AGTTTGGAAGCATATGTTTG+TGG | + | chr1.1:49734476-49734495 | MS.gene30857:intron | 35.0% |
! | CACCTTCCAATTTAAAGTGT+CGG | - | chr1.1:49734225-49734244 | None:intergenic | 35.0% |
! | CATAGATTTTGCTGCAAAGA+AGG | + | chr1.1:49734872-49734891 | MS.gene30857:CDS | 35.0% |
! | CTGCATTTATTGCTTGCTAA+GGG | + | chr1.1:49734405-49734424 | MS.gene30857:intron | 35.0% |
! | GAAGAAGTGGTTTTCTTCTT+GGG | - | chr1.1:49733857-49733876 | None:intergenic | 35.0% |
! | GCAAAAGAAGAAAAGTACAG+TGG | + | chr1.1:49733928-49733947 | MS.gene30857:CDS | 35.0% |
! | TCTGCATTTATTGCTTGCTA+AGG | + | chr1.1:49734404-49734423 | MS.gene30857:intron | 35.0% |
! | TGTATTGGCAAGCATATCAA+AGG | + | chr1.1:49734926-49734945 | MS.gene30857:CDS | 35.0% |
! | TTCCATTCTGAAAAGGAGAT+TGG | + | chr1.1:49733988-49734007 | MS.gene30857:CDS | 35.0% |
!! | CATCTCTAAAATGCAAGGTA+TGG | + | chr1.1:49734620-49734639 | MS.gene30857:intron | 35.0% |
!!! | ATCTTGTTGATTTTATGGGC+AGG | + | chr1.1:49734834-49734853 | MS.gene30857:intron | 35.0% |
AGGGTTTCTTTGCATTGCAA+AGG | + | chr1.1:49734573-49734592 | MS.gene30857:CDS | 40.0% | |
ATCCAACCCTGCATCTAAAT+CGG | + | chr1.1:49734162-49734181 | MS.gene30857:CDS | 40.0% | |
CACCGACACTTTAAATTGGA+AGG | + | chr1.1:49734220-49734239 | MS.gene30857:intron | 40.0% | |
CGACACTTTAAATTGGAAGG+TGG | + | chr1.1:49734223-49734242 | MS.gene30857:intron | 40.0% | |
GCAAAGAAGGTGACAATAGT+TGG | + | chr1.1:49734885-49734904 | MS.gene30857:CDS | 40.0% | |
GGGTTTCTTTGCATTGCAAA+GGG | + | chr1.1:49734574-49734593 | MS.gene30857:CDS | 40.0% | |
TCTGACTCAATTACTCCACA+TGG | + | chr1.1:49734022-49734041 | MS.gene30857:CDS | 40.0% | |
TCTTCTTCTTCCAAGCCAAT+TGG | + | chr1.1:49733872-49733891 | MS.gene30857:CDS | 40.0% | |
TGGCTTAGAAGAGTAACTGT+TGG | - | chr1.1:49733963-49733982 | None:intergenic | 40.0% | |
TTGAGCAGGTTGTAGTATTG+AGG | + | chr1.1:49734553-49734572 | MS.gene30857:intron | 40.0% | |
TTGGACACATTCAACACATG+TGG | + | chr1.1:49734265-49734284 | MS.gene30857:intron | 40.0% | |
! | AAGAAAACTAACCTGGCTTG+AGG | - | chr1.1:49734191-49734210 | None:intergenic | 40.0% |
! | GCTAAGACATATTGCTGTTG+AGG | - | chr1.1:49733687-49733706 | None:intergenic | 40.0% |
! | GTTTTCTTCTTGGGGTCAAT+AGG | - | chr1.1:49733848-49733867 | None:intergenic | 40.0% |
! | TGAGCAGGTTGTAGTATTGA+GGG | + | chr1.1:49734554-49734573 | MS.gene30857:intron | 40.0% |
ACAAGGAGCAGTGATAGTCT+TGG | - | chr1.1:49733810-49733829 | None:intergenic | 45.0% | |
AGGAACCCGATTTAGATGCA+GGG | - | chr1.1:49734171-49734190 | None:intergenic | 45.0% | |
CATGTTCTGTCCAATTGGCT+TGG | - | chr1.1:49733885-49733904 | None:intergenic | 45.0% | |
GGTAGCTGAGAAGAAGAACA+AGG | - | chr1.1:49733827-49733846 | None:intergenic | 45.0% | |
GTCTAGTGTCAATGCTCCAT+AGG | + | chr1.1:49734338-49734357 | MS.gene30857:intron | 45.0% | |
TCCAACCCTGCATCTAAATC+GGG | + | chr1.1:49734163-49734182 | MS.gene30857:CDS | 45.0% | |
TGAATGTGTCCAACCTGTGT+TGG | - | chr1.1:49734258-49734277 | None:intergenic | 45.0% | |
! | AGTGACGCAGCTTTTGTAGA+TGG | + | chr1.1:49734064-49734083 | MS.gene30857:CDS | 45.0% |
! | GACTTTGCCTCCAAGTTGAA+TGG | - | chr1.1:49733741-49733760 | None:intergenic | 45.0% |
! | TGCATTGCAAAGGGTGTGAA+GGG | + | chr1.1:49734583-49734602 | MS.gene30857:CDS | 45.0% |
! | TGGCTTGGAAGAAGAAGAAG+TGG | - | chr1.1:49733870-49733889 | None:intergenic | 45.0% |
! | TTACCGGTGTCAATGAGAAG+TGG | + | chr1.1:49734306-49734325 | MS.gene30857:intron | 45.0% |
! | TTGCATTGCAAAGGGTGTGA+AGG | + | chr1.1:49734582-49734601 | MS.gene30857:CDS | 45.0% |
! | TTGCCACTTCTCATTGACAC+CGG | - | chr1.1:49734312-49734331 | None:intergenic | 45.0% |
ACCCGATTTAGATGCAGGGT+TGG | - | chr1.1:49734167-49734186 | None:intergenic | 50.0% | |
GAGGAACCCGATTTAGATGC+AGG | - | chr1.1:49734172-49734191 | None:intergenic | 50.0% | |
TAAATCGGGTTCCTCAAGCC+AGG | + | chr1.1:49734177-49734196 | MS.gene30857:CDS | 50.0% | |
!! | GCACAATTTTGGCCAGCACT+TGG | + | chr1.1:49734957-49734976 | MS.gene30857:CDS | 50.0% |
!! | TTGGTGTCAGATCCAAGTGC+TGG | - | chr1.1:49734972-49734991 | None:intergenic | 50.0% |
GTCCAACCTGTGTTGGACAC+AGG | - | chr1.1:49734251-49734270 | None:intergenic | 55.0% | |
GTCCTGTGTCCAACACAGGT+TGG | + | chr1.1:49734246-49734265 | MS.gene30857:intron | 55.0% | |
! | AAGGGTGTGAAGGGAAGCTG+AGG | + | chr1.1:49734592-49734611 | MS.gene30857:CDS | 55.0% |
GTGGGTCCTGTGTCCAACAC+AGG | + | chr1.1:49734242-49734261 | MS.gene30857:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 49733650 | 49735010 | 49733650 | ID=MS.gene30857 |
chr1.1 | mRNA | 49733650 | 49735010 | 49733650 | ID=MS.gene30857.t1;Parent=MS.gene30857 |
chr1.1 | exon | 49733650 | 49734198 | 49733650 | ID=MS.gene30857.t1.exon1;Parent=MS.gene30857.t1 |
chr1.1 | CDS | 49733650 | 49734198 | 49733650 | ID=cds.MS.gene30857.t1;Parent=MS.gene30857.t1 |
chr1.1 | exon | 49734561 | 49734636 | 49734561 | ID=MS.gene30857.t1.exon2;Parent=MS.gene30857.t1 |
chr1.1 | CDS | 49734561 | 49734636 | 49734561 | ID=cds.MS.gene30857.t1;Parent=MS.gene30857.t1 |
chr1.1 | exon | 49734856 | 49735010 | 49734856 | ID=MS.gene30857.t1.exon3;Parent=MS.gene30857.t1 |
chr1.1 | CDS | 49734856 | 49735010 | 49734856 | ID=cds.MS.gene30857.t1;Parent=MS.gene30857.t1 |
Gene Sequence |
Protein sequence |