Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029909.t1 | XP_013468300.1 | 91.6 | 261 | 20 | 1 | 1 | 259 | 1 | 261 | 2.30E-122 | 448.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029909.t1 | Q58FZ0 | 41.4 | 266 | 129 | 10 | 6 | 257 | 5 | 257 | 1.7e-33 | 144.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029909.t1 | A0A072VKM1 | 91.6 | 261 | 20 | 1 | 1 | 259 | 1 | 261 | 1.7e-122 | 448.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene029909 | MS.gene068551 | PPI |
| MS.gene30857 | MS.gene029909 | PPI |
| MS.gene018517 | MS.gene029909 | PPI |
| MS.gene029909 | MS.gene007484 | PPI |
| MS.gene029909 | MS.gene073830 | PPI |
| MS.gene029909 | MS.gene22481 | PPI |
| MS.gene029909 | MS.gene09786 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029909.t1 | MTR_1g067560 | 95.019 | 261 | 11 | 1 | 1 | 259 | 1 | 261 | 9.80e-175 | 481 |
| MS.gene029909.t1 | MTR_7g100450 | 57.875 | 273 | 89 | 8 | 1 | 247 | 1 | 273 | 1.03e-85 | 257 |
| MS.gene029909.t1 | MTR_7g100450 | 52.966 | 236 | 85 | 8 | 1 | 210 | 1 | 236 | 4.84e-59 | 187 |
| MS.gene029909.t1 | MTR_4g062450 | 39.216 | 255 | 105 | 9 | 1 | 246 | 1 | 214 | 2.63e-41 | 142 |
| MS.gene029909.t1 | MTR_6g086020 | 56.250 | 64 | 28 | 0 | 183 | 246 | 65 | 128 | 7.45e-23 | 91.3 |
| MS.gene029909.t1 | MTR_8g103820 | 56.250 | 64 | 28 | 0 | 183 | 246 | 66 | 129 | 1.67e-22 | 90.1 |
| MS.gene029909.t1 | MTR_7g013660 | 44.776 | 67 | 36 | 1 | 181 | 246 | 2 | 68 | 2.24e-14 | 68.6 |
| MS.gene029909.t1 | MTR_1g092670 | 42.029 | 69 | 39 | 1 | 181 | 248 | 2 | 70 | 6.72e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene029909.t1 | AT2G37390 | 42.857 | 252 | 120 | 9 | 6 | 246 | 5 | 243 | 4.75e-51 | 167 |
| MS.gene029909.t1 | AT2G37390 | 42.292 | 253 | 121 | 9 | 6 | 246 | 5 | 244 | 1.19e-49 | 164 |
| MS.gene029909.t1 | AT3G53530 | 41.569 | 255 | 118 | 9 | 1 | 246 | 1 | 233 | 2.54e-46 | 155 |
| MS.gene029909.t1 | AT3G53530 | 41.406 | 256 | 118 | 10 | 1 | 246 | 1 | 234 | 1.64e-44 | 150 |
| MS.gene029909.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 177 | 249 | 244 | 316 | 5.42e-35 | 128 |
| MS.gene029909.t1 | AT5G02600 | 78.082 | 73 | 16 | 0 | 177 | 249 | 244 | 316 | 5.42e-35 | 128 |
| MS.gene029909.t1 | AT2G28660 | 73.438 | 64 | 17 | 0 | 183 | 246 | 183 | 246 | 4.49e-27 | 105 |
| MS.gene029909.t1 | AT3G24450 | 51.562 | 64 | 31 | 0 | 183 | 246 | 74 | 137 | 9.69e-18 | 77.8 |
| MS.gene029909.t1 | AT1G66240 | 43.038 | 79 | 44 | 1 | 177 | 254 | 27 | 105 | 4.60e-16 | 72.4 |
| MS.gene029909.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 182 | 247 | 2 | 68 | 2.72e-14 | 68.2 |
| MS.gene029909.t1 | AT3G56240 | 43.284 | 67 | 37 | 1 | 182 | 247 | 2 | 68 | 2.72e-14 | 68.2 |
| MS.gene029909.t1 | AT5G27690 | 46.032 | 63 | 33 | 1 | 186 | 247 | 33 | 95 | 1.83e-12 | 66.6 |
Find 51 sgRNAs with CRISPR-Local
Find 95 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTGAATCATTGATAAT+AGG | 0.154536 | 1.4:-54301182 | None:intergenic |
| TCCTCCTAATTAGATGAATT+TGG | 0.164221 | 1.4:-54302403 | None:intergenic |
| TTAGATGAATTTGGTTTCTT+TGG | 0.205681 | 1.4:-54302394 | None:intergenic |
| TTCTTGAATCATTGATAATA+GGG | 0.260643 | 1.4:-54301181 | None:intergenic |
| GGAGTAATTGAGTCAGAATT+TGG | 0.263951 | 1.4:-54301422 | None:intergenic |
| ATGCTTGCCAATACACTAAA+TGG | 0.274222 | 1.4:-54302324 | None:intergenic |
| AGGTGAAGAATGCACAATTT+TGG | 0.279496 | 1.4:+54302352 | MS.gene029909:CDS |
| AACTAAGGTTGATGATAAAA+AGG | 0.295490 | 1.4:+54301523 | MS.gene029909:CDS |
| ATCCAACCCTGCATCTAAAT+CGG | 0.376694 | 1.4:+54301568 | MS.gene029909:CDS |
| TTCCATTCTGAAAAGGAGAT+TGG | 0.404756 | 1.4:+54301394 | MS.gene029909:CDS |
| TCTTCTTCTTCCAAGCCAAT+TGG | 0.409571 | 1.4:+54301278 | MS.gene029909:CDS |
| GCAAAGAAGGTGACAATAGT+TGG | 0.411060 | 1.4:+54302291 | MS.gene029909:CDS |
| TTCTGTCTTGGCATTAACTA+AGG | 0.413181 | 1.4:+54301508 | MS.gene029909:CDS |
| TGTGACTCCATTTAGTGTAT+TGG | 0.414736 | 1.4:+54302317 | MS.gene029909:CDS |
| CATGTTCTGTCCAATTGGCT+TGG | 0.427254 | 1.4:-54301288 | None:intergenic |
| TTGAGCAGGTTGTAGTATTG+AGG | 0.431624 | 1.4:+54301959 | MS.gene029909:intron |
| CAAAGAAGGTGACAATAGTT+GGG | 0.432731 | 1.4:+54302292 | MS.gene029909:CDS |
| TTCGAATTATGATTCTGTCT+TGG | 0.443038 | 1.4:+54301496 | MS.gene029909:CDS |
| TGCAGCAAAATCTATGTTGA+AGG | 0.445020 | 1.4:-54302271 | None:intergenic |
| GACTTTGCCTCCAAGTTGAA+TGG | 0.449627 | 1.4:-54301144 | None:intergenic |
| TGAGCAGGTTGTAGTATTGA+GGG | 0.452176 | 1.4:+54301960 | MS.gene029909:intron |
| GAGGAACCCGATTTAGATGC+AGG | 0.453934 | 1.4:-54301575 | None:intergenic |
| GGGTTTCTTTGCATTGCAAA+GGG | 0.475577 | 1.4:+54301980 | MS.gene029909:CDS |
| TCCAACCCTGCATCTAAATC+GGG | 0.488661 | 1.4:+54301569 | MS.gene029909:CDS |
| CAATTGATTCCATTCTGAAA+AGG | 0.489678 | 1.4:+54301387 | MS.gene029909:CDS |
| AATCATTGATAATAGGGTTG+TGG | 0.501645 | 1.4:-54301175 | None:intergenic |
| ACAAGGAGCAGTGATAGTCT+TGG | 0.502397 | 1.4:-54301213 | None:intergenic |
| TCAAATACCATTCAACTTGG+AGG | 0.505409 | 1.4:+54301137 | MS.gene029909:CDS |
| AGGGTTTCTTTGCATTGCAA+AGG | 0.507191 | 1.4:+54301979 | MS.gene029909:CDS |
| TATCCAAAAGATGAAAAGAA+TGG | 0.508564 | 1.4:+54301046 | None:intergenic |
| ACCCGATTTAGATGCAGGGT+TGG | 0.510035 | 1.4:-54301570 | None:intergenic |
| TTGGTGTCAGATCCAAGTGC+TGG | 0.516428 | 1.4:-54302375 | None:intergenic |
| TGCATTGCAAAGGGTGTGAA+GGG | 0.518392 | 1.4:+54301989 | MS.gene029909:CDS |
| TCTTCAAATACCATTCAACT+TGG | 0.534861 | 1.4:+54301134 | MS.gene029909:CDS |
| TTGCATTGCAAAGGGTGTGA+AGG | 0.536259 | 1.4:+54301988 | MS.gene029909:CDS |
| GCTAAGACATATTGCTGTTG+AGG | 0.541448 | 1.4:-54301090 | None:intergenic |
| TGGCTTGGAAGAAGAAGAAG+TGG | 0.558993 | 1.4:-54301273 | None:intergenic |
| AACAGCAATATGTCTTAGCA+TGG | 0.568544 | 1.4:+54301094 | MS.gene029909:CDS |
| TAAATCGGGTTCCTCAAGCC+AGG | 0.574328 | 1.4:+54301583 | MS.gene029909:CDS |
| AGGAACCCGATTTAGATGCA+GGG | 0.591898 | 1.4:-54301574 | None:intergenic |
| AAACACATCTCTAAAATGCA+AGG | 0.597452 | 1.4:+54302021 | MS.gene029909:CDS |
| TGTATTGGCAAGCATATCAA+AGG | 0.601005 | 1.4:+54302332 | MS.gene029909:CDS |
| TGGCTTAGAAGAGTAACTGT+TGG | 0.609262 | 1.4:-54301366 | None:intergenic |
| AGCAAAATCTATGTTGAAGG+AGG | 0.618997 | 1.4:-54302268 | None:intergenic |
| GGTAGCTGAGAAGAAGAACA+AGG | 0.627415 | 1.4:-54301230 | None:intergenic |
| TCTGACTCAATTACTCCACA+TGG | 0.643353 | 1.4:+54301428 | MS.gene029909:CDS |
| AAGAAAACTAACCTGGCTTG+AGG | 0.646869 | 1.4:-54301594 | None:intergenic |
| AAGGGTGTGAAGGGAAGCTG+AGG | 0.652756 | 1.4:+54301998 | MS.gene029909:CDS |
| AAAGAAGGTGACAATAGTTG+GGG | 0.656060 | 1.4:+54302293 | MS.gene029909:CDS |
| GCAAAAGAAGAAAAGTACAG+TGG | 0.667428 | 1.4:+54301334 | MS.gene029909:CDS |
| AAAGATCTAGTTGAACCATG+TGG | 0.741520 | 1.4:-54301443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATACATTTTTTAAATGT+GGG | - | chr1.4:54302061-54302080 | None:intergenic | 10.0% |
| !!! | TTAAATACATTTTTTAAATG+TGG | - | chr1.4:54302062-54302081 | None:intergenic | 10.0% |
| !!! | AAATACATTTTTTAAATGTG+GGG | - | chr1.4:54302060-54302079 | None:intergenic | 15.0% |
| !!! | TTTAATCTTGTTGATTTTAT+GGG | + | chr1.4:54302236-54302255 | MS.gene029909:intron | 15.0% |
| !!! | TTTTAATCTTGTTGATTTTA+TGG | + | chr1.4:54302235-54302254 | MS.gene029909:intron | 15.0% |
| !! | AAAATTCATAAAACTAGTCA+TGG | - | chr1.4:54301913-54301932 | None:intergenic | 20.0% |
| !! | AGTGAAAGATTATTTAAAGA+TGG | - | chr1.4:54302148-54302167 | None:intergenic | 20.0% |
| !! | TAAATGCAGAAAATTAAGAT+TGG | - | chr1.4:54301800-54301819 | None:intergenic | 20.0% |
| !!! | TTATTTTTTGCCACTTATTT+AGG | + | chr1.4:54301769-54301788 | MS.gene029909:intron | 20.0% |
| !!! | TTCTTGAATCATTGATAATA+GGG | - | chr1.4:54301184-54301203 | None:intergenic | 20.0% |
| ! | ACATTCTCTCAAATTATTAC+CGG | + | chr1.4:54301696-54301715 | MS.gene029909:intron | 25.0% |
| ! | ATTGGAAAATCCTAAATAAG+TGG | - | chr1.4:54301782-54301801 | None:intergenic | 25.0% |
| ! | ATTTGAGTAAATATTTGAGC+AGG | + | chr1.4:54301945-54301964 | MS.gene029909:intron | 25.0% |
| ! | TCTCATATTTGAATTCCATT+CGG | - | chr1.4:54302215-54302234 | None:intergenic | 25.0% |
| !! | CTTCTTGAATCATTGATAAT+AGG | - | chr1.4:54301185-54301204 | None:intergenic | 25.0% |
| !! | TTAGATGAATTTGGTTTCTT+TGG | - | chr1.4:54302397-54302416 | None:intergenic | 25.0% |
| !!! | AACTAAGGTTGATGATAAAA+AGG | + | chr1.4:54301523-54301542 | MS.gene029909:CDS | 25.0% |
| ATTGGACAGAACATGAAAAA+TGG | + | chr1.4:54301296-54301315 | MS.gene029909:CDS | 30.0% | |
| GAATATGAACTAAGCAAGTT+TGG | + | chr1.4:54301866-54301885 | MS.gene029909:intron | 30.0% | |
| GTGGCAAAAAATAAAACCTA+TGG | - | chr1.4:54301763-54301782 | None:intergenic | 30.0% | |
| TCTTCAAATACCATTCAACT+TGG | + | chr1.4:54301134-54301153 | MS.gene029909:CDS | 30.0% | |
| TTCGAATTATGATTCTGTCT+TGG | + | chr1.4:54301496-54301515 | MS.gene029909:CDS | 30.0% | |
| ! | AATCATTGATAATAGGGTTG+TGG | - | chr1.4:54301178-54301197 | None:intergenic | 30.0% |
| ! | CAATTGATTCCATTCTGAAA+AGG | + | chr1.4:54301387-54301406 | MS.gene029909:CDS | 30.0% |
| ! | CTTTTCAGAATGGAATCAAT+TGG | - | chr1.4:54301389-54301408 | None:intergenic | 30.0% |
| ! | GATAAAAAGGATCAAGTTGT+TGG | + | chr1.4:54301536-54301555 | MS.gene029909:CDS | 30.0% |
| ! | TTTTTCATGTTCTGTCCAAT+TGG | - | chr1.4:54301296-54301315 | None:intergenic | 30.0% |
| !! | AAACACATCTCTAAAATGCA+AGG | + | chr1.4:54302021-54302040 | MS.gene029909:CDS | 30.0% |
| AAAGAAGGTGACAATAGTTG+GGG | + | chr1.4:54302293-54302312 | MS.gene029909:CDS | 35.0% | |
| AAAGATCTAGTTGAACCATG+TGG | - | chr1.4:54301446-54301465 | None:intergenic | 35.0% | |
| AACAGCAATATGTCTTAGCA+TGG | + | chr1.4:54301094-54301113 | MS.gene029909:CDS | 35.0% | |
| ACGAGAAAAGAAAACTAACC+TGG | - | chr1.4:54301604-54301623 | None:intergenic | 35.0% | |
| AGCAAAATCTATGTTGAAGG+AGG | - | chr1.4:54302271-54302290 | None:intergenic | 35.0% | |
| ATGCTTGCCAATACACTAAA+TGG | - | chr1.4:54302327-54302346 | None:intergenic | 35.0% | |
| CAAAGAAGGTGACAATAGTT+GGG | + | chr1.4:54302292-54302311 | MS.gene029909:CDS | 35.0% | |
| GACACTTTAAATTGGAAGGT+GGG | + | chr1.4:54301630-54301649 | MS.gene029909:intron | 35.0% | |
| GGAGTAATTGAGTCAGAATT+TGG | - | chr1.4:54301425-54301444 | None:intergenic | 35.0% | |
| GTAACACCGACACTTTAAAT+TGG | + | chr1.4:54301622-54301641 | MS.gene029909:intron | 35.0% | |
| TATGTCACACATTTACCGAA+TGG | + | chr1.4:54302197-54302216 | MS.gene029909:intron | 35.0% | |
| TCAAATACCATTCAACTTGG+AGG | + | chr1.4:54301137-54301156 | MS.gene029909:CDS | 35.0% | |
| TGCAGCAAAATCTATGTTGA+AGG | - | chr1.4:54302274-54302293 | None:intergenic | 35.0% | |
| TGTGACTCCATTTAGTGTAT+TGG | + | chr1.4:54302317-54302336 | MS.gene029909:CDS | 35.0% | |
| TTCTGTCTTGGCATTAACTA+AGG | + | chr1.4:54301508-54301527 | MS.gene029909:CDS | 35.0% | |
| ! | AACCAATCTCCTTTTCAGAA+TGG | - | chr1.4:54301399-54301418 | None:intergenic | 35.0% |
| ! | AAGAAGTGGTTTTCTTCTTG+GGG | - | chr1.4:54301262-54301281 | None:intergenic | 35.0% |
| ! | AGAAGAAGTGGTTTTCTTCT+TGG | - | chr1.4:54301264-54301283 | None:intergenic | 35.0% |
| ! | AGGTGAAGAATGCACAATTT+TGG | + | chr1.4:54302352-54302371 | MS.gene029909:CDS | 35.0% |
| ! | CACCTTCCAATTTAAAGTGT+CGG | - | chr1.4:54301631-54301650 | None:intergenic | 35.0% |
| ! | CATAGATTTTGCTGCAAAGA+AGG | + | chr1.4:54302278-54302297 | MS.gene029909:CDS | 35.0% |
| ! | CTGCATTTATTGCTTGCTAA+GGG | + | chr1.4:54301811-54301830 | MS.gene029909:intron | 35.0% |
| ! | GAAGAAGTGGTTTTCTTCTT+GGG | - | chr1.4:54301263-54301282 | None:intergenic | 35.0% |
| ! | GCAAAAGAAGAAAAGTACAG+TGG | + | chr1.4:54301334-54301353 | MS.gene029909:CDS | 35.0% |
| ! | TCTGCATTTATTGCTTGCTA+AGG | + | chr1.4:54301810-54301829 | MS.gene029909:intron | 35.0% |
| ! | TGTATTGGCAAGCATATCAA+AGG | + | chr1.4:54302332-54302351 | MS.gene029909:CDS | 35.0% |
| ! | TTCCATTCTGAAAAGGAGAT+TGG | + | chr1.4:54301394-54301413 | MS.gene029909:CDS | 35.0% |
| !! | CATCTCTAAAATGCAAGGTA+TGG | + | chr1.4:54302026-54302045 | MS.gene029909:intron | 35.0% |
| !!! | ATCTTGTTGATTTTATGGGC+AGG | + | chr1.4:54302240-54302259 | MS.gene029909:intron | 35.0% |
| AGGGTTTCTTTGCATTGCAA+AGG | + | chr1.4:54301979-54301998 | MS.gene029909:CDS | 40.0% | |
| ATCCAACCCTGCATCTAAAT+CGG | + | chr1.4:54301568-54301587 | MS.gene029909:CDS | 40.0% | |
| CACCGACACTTTAAATTGGA+AGG | + | chr1.4:54301626-54301645 | MS.gene029909:intron | 40.0% | |
| CGACACTTTAAATTGGAAGG+TGG | + | chr1.4:54301629-54301648 | MS.gene029909:intron | 40.0% | |
| GCAAAGAAGGTGACAATAGT+TGG | + | chr1.4:54302291-54302310 | MS.gene029909:CDS | 40.0% | |
| GGGTTTCTTTGCATTGCAAA+GGG | + | chr1.4:54301980-54301999 | MS.gene029909:CDS | 40.0% | |
| TCTGACTCAATTACTCCACA+TGG | + | chr1.4:54301428-54301447 | MS.gene029909:CDS | 40.0% | |
| TCTTCTTCTTCCAAGCCAAT+TGG | + | chr1.4:54301278-54301297 | MS.gene029909:CDS | 40.0% | |
| TGGCTTAGAAGAGTAACTGT+TGG | - | chr1.4:54301369-54301388 | None:intergenic | 40.0% | |
| TTGAGCAGGTTGTAGTATTG+AGG | + | chr1.4:54301959-54301978 | MS.gene029909:intron | 40.0% | |
| TTGGACACATTCAACACATG+TGG | + | chr1.4:54301671-54301690 | MS.gene029909:intron | 40.0% | |
| ! | AAGAAAACTAACCTGGCTTG+AGG | - | chr1.4:54301597-54301616 | None:intergenic | 40.0% |
| ! | GCTAAGACATATTGCTGTTG+AGG | - | chr1.4:54301093-54301112 | None:intergenic | 40.0% |
| ! | GTTTTCTTCTTGGGGTCAAT+AGG | - | chr1.4:54301254-54301273 | None:intergenic | 40.0% |
| ! | TGAGCAGGTTGTAGTATTGA+GGG | + | chr1.4:54301960-54301979 | MS.gene029909:intron | 40.0% |
| ACAAGGAGCAGTGATAGTCT+TGG | - | chr1.4:54301216-54301235 | None:intergenic | 45.0% | |
| AGGAACCCGATTTAGATGCA+GGG | - | chr1.4:54301577-54301596 | None:intergenic | 45.0% | |
| CATGTTCTGTCCAATTGGCT+TGG | - | chr1.4:54301291-54301310 | None:intergenic | 45.0% | |
| GGTAGCTGAGAAGAAGAACA+AGG | - | chr1.4:54301233-54301252 | None:intergenic | 45.0% | |
| GTCTAGTGTCAATGCTCCAT+AGG | + | chr1.4:54301744-54301763 | MS.gene029909:intron | 45.0% | |
| TCCAACCCTGCATCTAAATC+GGG | + | chr1.4:54301569-54301588 | MS.gene029909:CDS | 45.0% | |
| TGAATGTGTCCAACCTGTGT+TGG | - | chr1.4:54301664-54301683 | None:intergenic | 45.0% | |
| ! | AGTGACGCAGCTTTTGTAGA+TGG | + | chr1.4:54301470-54301489 | MS.gene029909:CDS | 45.0% |
| ! | GACTTTGCCTCCAAGTTGAA+TGG | - | chr1.4:54301147-54301166 | None:intergenic | 45.0% |
| ! | TGCATTGCAAAGGGTGTGAA+GGG | + | chr1.4:54301989-54302008 | MS.gene029909:CDS | 45.0% |
| ! | TGGCTTGGAAGAAGAAGAAG+TGG | - | chr1.4:54301276-54301295 | None:intergenic | 45.0% |
| ! | TTACCGGTGTCAATGAGAAG+TGG | + | chr1.4:54301712-54301731 | MS.gene029909:intron | 45.0% |
| ! | TTGCATTGCAAAGGGTGTGA+AGG | + | chr1.4:54301988-54302007 | MS.gene029909:CDS | 45.0% |
| ! | TTGCCACTTCTCATTGACAC+CGG | - | chr1.4:54301718-54301737 | None:intergenic | 45.0% |
| ACCCGATTTAGATGCAGGGT+TGG | - | chr1.4:54301573-54301592 | None:intergenic | 50.0% | |
| GAGGAACCCGATTTAGATGC+AGG | - | chr1.4:54301578-54301597 | None:intergenic | 50.0% | |
| TAAATCGGGTTCCTCAAGCC+AGG | + | chr1.4:54301583-54301602 | MS.gene029909:CDS | 50.0% | |
| !! | GCACAATTTTGGCCAGCACT+TGG | + | chr1.4:54302363-54302382 | MS.gene029909:CDS | 50.0% |
| !! | TTGGTGTCAGATCCAAGTGC+TGG | - | chr1.4:54302378-54302397 | None:intergenic | 50.0% |
| GTCCAACCTGTGTTGGACAC+TGG | - | chr1.4:54301657-54301676 | None:intergenic | 55.0% | |
| GTCCAGTGTCCAACACAGGT+TGG | + | chr1.4:54301652-54301671 | MS.gene029909:intron | 55.0% | |
| ! | AAGGGTGTGAAGGGAAGCTG+AGG | + | chr1.4:54301998-54302017 | MS.gene029909:CDS | 55.0% |
| GTGGGTCCAGTGTCCAACAC+AGG | + | chr1.4:54301648-54301667 | MS.gene029909:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 54301056 | 54302416 | 54301056 | ID=MS.gene029909 |
| chr1.4 | mRNA | 54301056 | 54302416 | 54301056 | ID=MS.gene029909.t1;Parent=MS.gene029909 |
| chr1.4 | exon | 54301056 | 54301604 | 54301056 | ID=MS.gene029909.t1.exon1;Parent=MS.gene029909.t1 |
| chr1.4 | CDS | 54301056 | 54301604 | 54301056 | ID=cds.MS.gene029909.t1;Parent=MS.gene029909.t1 |
| chr1.4 | exon | 54301967 | 54302042 | 54301967 | ID=MS.gene029909.t1.exon2;Parent=MS.gene029909.t1 |
| chr1.4 | CDS | 54301967 | 54302042 | 54301967 | ID=cds.MS.gene029909.t1;Parent=MS.gene029909.t1 |
| chr1.4 | exon | 54302262 | 54302416 | 54302262 | ID=MS.gene029909.t1.exon3;Parent=MS.gene029909.t1 |
| chr1.4 | CDS | 54302262 | 54302416 | 54302262 | ID=cds.MS.gene029909.t1;Parent=MS.gene029909.t1 |
| Gene Sequence |
| Protein sequence |
