Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007857.t1 | XP_024628351.1 | 96.2 | 450 | 17 | 0 | 1 | 450 | 1 | 450 | 3.00E-242 | 847.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007857.t1 | F4KGE8 | 30.5 | 407 | 238 | 14 | 63 | 436 | 161 | 555 | 6.5e-36 | 153.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007857.t1 | A0A072TQI5 | 96.2 | 450 | 17 | 0 | 1 | 450 | 1 | 450 | 2.2e-242 | 847.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007857 | MS.gene45832 | PPI |
| MS.gene007857 | MS.gene48223 | PPI |
| MS.gene007857 | MS.gene059205 | PPI |
| MS.gene007857 | MS.gene023604 | PPI |
| MS.gene007857 | MS.gene27831 | PPI |
| MS.gene007857 | MS.gene058492 | PPI |
| MS.gene007857 | MS.gene48940 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007857.t1 | MTR_8g059485 | 96.889 | 450 | 14 | 0 | 1 | 450 | 10 | 459 | 0.0 | 896 |
| MS.gene007857.t1 | MTR_8g059485 | 96.889 | 450 | 14 | 0 | 1 | 450 | 1 | 450 | 0.0 | 896 |
| MS.gene007857.t1 | MTR_2g075910 | 60.744 | 484 | 145 | 13 | 1 | 453 | 1 | 470 | 0.0 | 533 |
| MS.gene007857.t1 | MTR_8g087400 | 43.319 | 464 | 231 | 8 | 1 | 437 | 1 | 459 | 1.69e-119 | 357 |
| MS.gene007857.t1 | MTR_4g025420 | 41.131 | 389 | 212 | 8 | 61 | 439 | 34 | 415 | 2.09e-88 | 276 |
| MS.gene007857.t1 | MTR_0178s0030 | 34.005 | 397 | 238 | 9 | 59 | 440 | 139 | 526 | 3.48e-60 | 205 |
| MS.gene007857.t1 | MTR_3g462150 | 30.488 | 410 | 251 | 11 | 52 | 436 | 77 | 477 | 2.09e-48 | 172 |
| MS.gene007857.t1 | MTR_5g075180 | 32.021 | 381 | 224 | 9 | 65 | 438 | 89 | 441 | 1.95e-46 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007857.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene007857.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene007857.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene007857.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene007857.t1 | AT1G53380 | 53.407 | 455 | 190 | 8 | 1 | 437 | 1 | 451 | 3.18e-165 | 473 |
| MS.gene007857.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 2 | 467 | 7.11e-159 | 458 |
| MS.gene007857.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 5 | 470 | 7.78e-159 | 458 |
| MS.gene007857.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene007857.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene007857.t1 | AT3G14870 | 51.702 | 470 | 194 | 11 | 1 | 441 | 1 | 466 | 7.83e-159 | 457 |
| MS.gene007857.t1 | AT1G29300 | 41.365 | 469 | 226 | 9 | 1 | 437 | 1 | 452 | 1.21e-110 | 334 |
| MS.gene007857.t1 | AT2G45260 | 39.589 | 389 | 215 | 8 | 63 | 437 | 37 | 419 | 1.04e-86 | 271 |
| MS.gene007857.t1 | AT3G60680 | 34.715 | 386 | 229 | 10 | 64 | 437 | 120 | 494 | 9.98e-60 | 203 |
| MS.gene007857.t1 | AT2G30380 | 33.598 | 378 | 205 | 9 | 66 | 438 | 76 | 412 | 1.95e-49 | 174 |
| MS.gene007857.t1 | AT4G34080 | 36.397 | 272 | 160 | 5 | 63 | 324 | 13 | 281 | 1.12e-47 | 166 |
| MS.gene007857.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 3.06e-46 | 167 |
| MS.gene007857.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 86 | 480 | 3.06e-46 | 167 |
| MS.gene007857.t1 | AT5G58960 | 31.436 | 404 | 238 | 13 | 63 | 436 | 161 | 555 | 1.39e-45 | 167 |
| MS.gene007857.t1 | AT4G33320 | 33.784 | 296 | 172 | 7 | 45 | 329 | 5 | 287 | 5.70e-43 | 153 |
| MS.gene007857.t1 | AT2G32130 | 45.600 | 125 | 66 | 1 | 64 | 188 | 35 | 157 | 2.86e-25 | 101 |
| MS.gene007857.t1 | AT4G36100 | 41.935 | 93 | 49 | 2 | 63 | 152 | 13 | 103 | 5.20e-15 | 74.7 |
| MS.gene007857.t1 | AT1G12330 | 23.715 | 253 | 159 | 5 | 207 | 447 | 252 | 482 | 4.53e-11 | 65.1 |
Find 64 sgRNAs with CRISPR-Local
Find 81 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAGAAAATGTTGTTTAT+AGG | 0.198493 | 8.1:+53255610 | MS.gene007857:CDS |
| AAGATGGCAAAAGGTGATTT+TGG | 0.202616 | 8.1:-53255816 | None:intergenic |
| AAAGAATGATGCCTCCATTT+TGG | 0.219724 | 8.1:-53255871 | None:intergenic |
| GCTCTTCATCTTCTTCTTCA+TGG | 0.223159 | 8.1:-53255023 | None:intergenic |
| AATTGTTGCAGCCGAATTAA+AGG | 0.260563 | 8.1:+53255269 | MS.gene007857:CDS |
| TCATTGTGATTATCGAAATA+AGG | 0.260665 | 8.1:-53255702 | None:intergenic |
| CAAGCTGAAATATTTCAAAT+AGG | 0.264277 | 8.1:+53256014 | MS.gene007857:CDS |
| GTTCACTTCATTTGCTGAAA+TGG | 0.292950 | 8.1:+53255944 | MS.gene007857:CDS |
| AAAATGGAGGCATCATTCTT+TGG | 0.328174 | 8.1:+53255873 | MS.gene007857:CDS |
| GTTGCTTTCACTGTAGTTCC+AGG | 0.358020 | 8.1:+53256122 | MS.gene007857:CDS |
| GTTTCTTAAAGAGAAGTTAG+AGG | 0.364153 | 8.1:+53255374 | MS.gene007857:CDS |
| AAGCTGAAATATTTCAAATA+GGG | 0.377206 | 8.1:+53256015 | MS.gene007857:CDS |
| AGAATCGAAGTCGCTTCTTA+AGG | 0.377855 | 8.1:+53255338 | MS.gene007857:CDS |
| GAGACTAGTTCACTCCAAAA+TGG | 0.381698 | 8.1:+53255857 | MS.gene007857:CDS |
| TTATGACCGTGATGGAATTC+AGG | 0.383293 | 8.1:+53255146 | MS.gene007857:CDS |
| ACTCTTCAGCTCCTTTAATT+CGG | 0.393760 | 8.1:-53255280 | None:intergenic |
| CTTGATAATCTACACATCTC+AGG | 0.410680 | 8.1:+53255459 | MS.gene007857:CDS |
| TCGAAGCTTTGTGAAGTTGT+TGG | 0.425314 | 8.1:+53255533 | MS.gene007857:CDS |
| GAATTCCATCACGGTCATAA+GGG | 0.426429 | 8.1:-53255143 | None:intergenic |
| TGAATTCCATCACGGTCATA+AGG | 0.426822 | 8.1:-53255144 | None:intergenic |
| ATAATAACCCATAAAATTGT+GGG | 0.445312 | 8.1:+53255306 | MS.gene007857:CDS |
| CATTGTGATTATCGAAATAA+GGG | 0.448793 | 8.1:-53255701 | None:intergenic |
| CTGAAATGGCTAAGAGGGTA+TGG | 0.458646 | 8.1:+53255958 | MS.gene007857:CDS |
| TATAATAACCCATAAAATTG+TGG | 0.465583 | 8.1:+53255305 | MS.gene007857:CDS |
| GTTTATGAAATGAGATCTGC+TGG | 0.469447 | 8.1:+53255555 | MS.gene007857:CDS |
| GAGGTTCAATGAGTTAAAAT+CGG | 0.474076 | 8.1:+53255764 | MS.gene007857:CDS |
| ACTGGAGTTGCACAAGTTGA+TGG | 0.474543 | 8.1:+53254967 | MS.gene007857:CDS |
| GTGAACAAGTTGTTGTCATC+GGG | 0.477261 | 8.1:-53255927 | None:intergenic |
| TGAAATGAGATCTGCTGGTT+GGG | 0.479878 | 8.1:+53255560 | MS.gene007857:CDS |
| CATTTGCTGAAATGGCTAAG+AGG | 0.480109 | 8.1:+53255952 | MS.gene007857:CDS |
| TAGCTGAGTTAAAGCAATGT+TGG | 0.501226 | 8.1:+53255205 | MS.gene007857:CDS |
| TGCTGATAAATTAATAGTCT+CGG | 0.502363 | 8.1:+53255170 | MS.gene007857:CDS |
| ACCCAACAAAAGATGGCAAA+AGG | 0.514310 | 8.1:-53255825 | None:intergenic |
| ACAATTGCTCCCTCCGGTGA+AGG | 0.525485 | 8.1:-53255252 | None:intergenic |
| GCTGCAACAATTGCTCCCTC+CGG | 0.528419 | 8.1:-53255258 | None:intergenic |
| GACATGAAACAAAGGAATGT+TGG | 0.529644 | 8.1:+53255897 | MS.gene007857:CDS |
| ATTTGAAATATTTCAGCTTG+AGG | 0.530973 | 8.1:-53256011 | None:intergenic |
| ATTTGCTGAAATGGCTAAGA+GGG | 0.540204 | 8.1:+53255953 | MS.gene007857:CDS |
| GAAATATTTCAAATAGGGAA+AGG | 0.542615 | 8.1:+53256020 | MS.gene007857:CDS |
| AGTGAACAAGTTGTTGTCAT+CGG | 0.555601 | 8.1:-53255928 | None:intergenic |
| AACAGAACAAGTTAATTGAA+AGG | 0.567554 | 8.1:+53255406 | MS.gene007857:CDS |
| GTATTTCACCCAACAAAAGA+TGG | 0.568758 | 8.1:-53255832 | None:intergenic |
| CTTCATGTAAAATCAATGAC+TGG | 0.569128 | 8.1:+53254949 | MS.gene007857:CDS |
| AGAGAAGATATAAAATGTGT+AGG | 0.571896 | 8.1:-53255489 | None:intergenic |
| ATGAAATGAGATCTGCTGGT+TGG | 0.574092 | 8.1:+53255559 | MS.gene007857:CDS |
| GTTAAAATCGGTGAATGCAA+AGG | 0.583587 | 8.1:+53255776 | MS.gene007857:CDS |
| ACATTGCTTTAACTCAGCTA+AGG | 0.585709 | 8.1:-53255202 | None:intergenic |
| TAGATTCTCTGATGTATACA+TGG | 0.592423 | 8.1:+53256046 | MS.gene007857:CDS |
| TATATCTTCTCTTCGCCACA+CGG | 0.595428 | 8.1:+53255500 | MS.gene007857:CDS |
| TTGATAATCTACACATCTCA+GGG | 0.598936 | 8.1:+53255460 | MS.gene007857:CDS |
| TCTTAAAGAGAAGTTAGAGG+AGG | 0.599840 | 8.1:+53255377 | MS.gene007857:CDS |
| AATTCCATCACGGTCATAAG+GGG | 0.601774 | 8.1:-53255142 | None:intergenic |
| CGAGCTAGTTTACTCTTGTG+TGG | 0.604460 | 8.1:-53254910 | None:intergenic |
| GAAAGGAGGTTAAATCAAAG+TGG | 0.604775 | 8.1:+53255423 | MS.gene007857:CDS |
| AGAACAAGTTAATTGAAAGG+AGG | 0.617633 | 8.1:+53255409 | MS.gene007857:CDS |
| GAATCCCCTTATGACCGTGA+TGG | 0.621817 | 8.1:+53255138 | MS.gene007857:CDS |
| ATAACTGTGAGAGGTAAACT+TGG | 0.648658 | 8.1:-53256175 | None:intergenic |
| TAATAACCCATAAAATTGTG+GGG | 0.649171 | 8.1:+53255307 | MS.gene007857:CDS |
| TCTTTGGTGACATGAAACAA+AGG | 0.654420 | 8.1:+53255889 | MS.gene007857:CDS |
| TTCGAATTGATTTAACCGTG+TGG | 0.660124 | 8.1:-53255515 | None:intergenic |
| TGTGATTATCGAAATAAGGG+AGG | 0.664917 | 8.1:-53255698 | None:intergenic |
| CAGCATCCTGAATTCCATCA+CGG | 0.672142 | 8.1:-53255152 | None:intergenic |
| ACTAGTTCACTCCAAAATGG+AGG | 0.674833 | 8.1:+53255860 | MS.gene007857:CDS |
| GTGGCTGTGATAACTGTGAG+AGG | 0.701707 | 8.1:-53256184 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAGAAAATGTTGTTTAT+AGG | + | chr8.1:53255610-53255629 | MS.gene007857:CDS | 15.0% |
| !! | AAGCTGAAATATTTCAAATA+GGG | + | chr8.1:53256015-53256034 | MS.gene007857:CDS | 20.0% |
| !! | ATAATAACCCATAAAATTGT+GGG | + | chr8.1:53255306-53255325 | MS.gene007857:CDS | 20.0% |
| !! | TATAATAACCCATAAAATTG+TGG | + | chr8.1:53255305-53255324 | MS.gene007857:CDS | 20.0% |
| !!! | AACAAAACACAATTTTTCTT+TGG | + | chr8.1:53255741-53255760 | MS.gene007857:CDS | 20.0% |
| !!! | AATTGTGTTTTGTTTTTATC+AGG | - | chr8.1:53255735-53255754 | None:intergenic | 20.0% |
| !!! | ACAAAACACAATTTTTCTTT+GGG | + | chr8.1:53255742-53255761 | MS.gene007857:CDS | 20.0% |
| ! | AACAGAACAAGTTAATTGAA+AGG | + | chr8.1:53255406-53255425 | MS.gene007857:CDS | 25.0% |
| ! | AGAGAAGATATAAAATGTGT+AGG | - | chr8.1:53255492-53255511 | None:intergenic | 25.0% |
| ! | CAAGCTGAAATATTTCAAAT+AGG | + | chr8.1:53256014-53256033 | MS.gene007857:CDS | 25.0% |
| ! | CATTGTGATTATCGAAATAA+GGG | - | chr8.1:53255704-53255723 | None:intergenic | 25.0% |
| ! | GAAATATTTCAAATAGGGAA+AGG | + | chr8.1:53256020-53256039 | MS.gene007857:CDS | 25.0% |
| ! | TAATAACCCATAAAATTGTG+GGG | + | chr8.1:53255307-53255326 | MS.gene007857:CDS | 25.0% |
| ! | TCATTGTGATTATCGAAATA+AGG | - | chr8.1:53255705-53255724 | None:intergenic | 25.0% |
| ! | TGCTGATAAATTAATAGTCT+CGG | + | chr8.1:53255170-53255189 | MS.gene007857:CDS | 25.0% |
| !! | ATTTGAAATATTTCAGCTTG+AGG | - | chr8.1:53256014-53256033 | None:intergenic | 25.0% |
| AGAACAAGTTAATTGAAAGG+AGG | + | chr8.1:53255409-53255428 | MS.gene007857:CDS | 30.0% | |
| CTTCATGTAAAATCAATGAC+TGG | + | chr8.1:53254949-53254968 | MS.gene007857:CDS | 30.0% | |
| GAGGTTCAATGAGTTAAAAT+CGG | + | chr8.1:53255764-53255783 | MS.gene007857:CDS | 30.0% | |
| GTTTCTTAAAGAGAAGTTAG+AGG | + | chr8.1:53255374-53255393 | MS.gene007857:CDS | 30.0% | |
| TAGATTCTCTGATGTATACA+TGG | + | chr8.1:53256046-53256065 | MS.gene007857:CDS | 30.0% | |
| TGAAGAGCTTAAGAAAAAAG+TGG | + | chr8.1:53255038-53255057 | MS.gene007857:CDS | 30.0% | |
| ! | AAACACAATTTTTCTTTGGG+AGG | + | chr8.1:53255745-53255764 | MS.gene007857:CDS | 30.0% |
| ! | GTTTTACCAATCTTAAAACC+TGG | - | chr8.1:53256143-53256162 | None:intergenic | 30.0% |
| ! | TTGATAATCTACACATCTCA+GGG | + | chr8.1:53255460-53255479 | MS.gene007857:CDS | 30.0% |
| !! | AATTGAGTCTTTTGTTTGCA+GGG | + | chr8.1:53255656-53255675 | MS.gene007857:CDS | 30.0% |
| !! | ATTCAATTTTGATCCTTCAC+CGG | + | chr8.1:53255239-53255258 | MS.gene007857:CDS | 30.0% |
| AATTGTTGCAGCCGAATTAA+AGG | + | chr8.1:53255269-53255288 | MS.gene007857:CDS | 35.0% | |
| ACATTGCTTTAACTCAGCTA+AGG | - | chr8.1:53255205-53255224 | None:intergenic | 35.0% | |
| ACTCTTCAGCTCCTTTAATT+CGG | - | chr8.1:53255283-53255302 | None:intergenic | 35.0% | |
| AGTGAACAAGTTGTTGTCAT+CGG | - | chr8.1:53255931-53255950 | None:intergenic | 35.0% | |
| ATAACTGTGAGAGGTAAACT+TGG | - | chr8.1:53256178-53256197 | None:intergenic | 35.0% | |
| GAAAGGAGGTTAAATCAAAG+TGG | + | chr8.1:53255423-53255442 | MS.gene007857:CDS | 35.0% | |
| GACATGAAACAAAGGAATGT+TGG | + | chr8.1:53255897-53255916 | MS.gene007857:CDS | 35.0% | |
| GTATTTCACCCAACAAAAGA+TGG | - | chr8.1:53255835-53255854 | None:intergenic | 35.0% | |
| GTTAAAATCGGTGAATGCAA+AGG | + | chr8.1:53255776-53255795 | MS.gene007857:CDS | 35.0% | |
| GTTTATGAAATGAGATCTGC+TGG | + | chr8.1:53255555-53255574 | MS.gene007857:CDS | 35.0% | |
| TAGCTGAGTTAAAGCAATGT+TGG | + | chr8.1:53255205-53255224 | MS.gene007857:CDS | 35.0% | |
| TCTTAAAGAGAAGTTAGAGG+AGG | + | chr8.1:53255377-53255396 | MS.gene007857:CDS | 35.0% | |
| TGTGATTATCGAAATAAGGG+AGG | - | chr8.1:53255701-53255720 | None:intergenic | 35.0% | |
| ! | AAAGAATGATGCCTCCATTT+TGG | - | chr8.1:53255874-53255893 | None:intergenic | 35.0% |
| ! | AAGATGGCAAAAGGTGATTT+TGG | - | chr8.1:53255819-53255838 | None:intergenic | 35.0% |
| ! | ACCTTTTGCCATCTTTTGTT+GGG | + | chr8.1:53255824-53255843 | MS.gene007857:CDS | 35.0% |
| ! | ACTTCTTCCCCACAATTTTA+TGG | - | chr8.1:53255317-53255336 | None:intergenic | 35.0% |
| ! | ATTTGCTGAAATGGCTAAGA+GGG | + | chr8.1:53255953-53255972 | MS.gene007857:CDS | 35.0% |
| ! | CTTCTTCCCCACAATTTTAT+GGG | - | chr8.1:53255316-53255335 | None:intergenic | 35.0% |
| ! | CTTGATAATCTACACATCTC+AGG | + | chr8.1:53255459-53255478 | MS.gene007857:CDS | 35.0% |
| ! | GTTCACTTCATTTGCTGAAA+TGG | + | chr8.1:53255944-53255963 | MS.gene007857:CDS | 35.0% |
| ! | TCTTTGGTGACATGAAACAA+AGG | + | chr8.1:53255889-53255908 | MS.gene007857:CDS | 35.0% |
| ! | TTCGAATTGATTTAACCGTG+TGG | - | chr8.1:53255518-53255537 | None:intergenic | 35.0% |
| ! | TTTCTTTTCACTTGAGCTTG+TGG | - | chr8.1:53256206-53256225 | None:intergenic | 35.0% |
| !! | AAAATGGAGGCATCATTCTT+TGG | + | chr8.1:53255873-53255892 | MS.gene007857:CDS | 35.0% |
| !! | CAATTGAGTCTTTTGTTTGC+AGG | + | chr8.1:53255655-53255674 | MS.gene007857:CDS | 35.0% |
| !!! | GTAGTTCCAGGTTTTAAGAT+TGG | + | chr8.1:53256134-53256153 | MS.gene007857:CDS | 35.0% |
| AATTCCATCACGGTCATAAG+GGG | - | chr8.1:53255145-53255164 | None:intergenic | 40.0% | |
| ACCCAACAAAAGATGGCAAA+AGG | - | chr8.1:53255828-53255847 | None:intergenic | 40.0% | |
| ACTAGTTCACTCCAAAATGG+AGG | + | chr8.1:53255860-53255879 | MS.gene007857:CDS | 40.0% | |
| AGAATCGAAGTCGCTTCTTA+AGG | + | chr8.1:53255338-53255357 | MS.gene007857:CDS | 40.0% | |
| ATGAAATGAGATCTGCTGGT+TGG | + | chr8.1:53255559-53255578 | MS.gene007857:CDS | 40.0% | |
| GAATTCCATCACGGTCATAA+GGG | - | chr8.1:53255146-53255165 | None:intergenic | 40.0% | |
| GCTCTTCATCTTCTTCTTCA+TGG | - | chr8.1:53255026-53255045 | None:intergenic | 40.0% | |
| GTGAACAAGTTGTTGTCATC+GGG | - | chr8.1:53255930-53255949 | None:intergenic | 40.0% | |
| TATATCTTCTCTTCGCCACA+CGG | + | chr8.1:53255500-53255519 | MS.gene007857:CDS | 40.0% | |
| TGAATTCCATCACGGTCATA+AGG | - | chr8.1:53255147-53255166 | None:intergenic | 40.0% | |
| ! | CACCTTTTGCCATCTTTTGT+TGG | + | chr8.1:53255823-53255842 | MS.gene007857:CDS | 40.0% |
| ! | CATTTGCTGAAATGGCTAAG+AGG | + | chr8.1:53255952-53255971 | MS.gene007857:CDS | 40.0% |
| ! | GAGACTAGTTCACTCCAAAA+TGG | + | chr8.1:53255857-53255876 | MS.gene007857:CDS | 40.0% |
| ! | TCGAAGCTTTGTGAAGTTGT+TGG | + | chr8.1:53255533-53255552 | MS.gene007857:CDS | 40.0% |
| ! | TGAAATGAGATCTGCTGGTT+GGG | + | chr8.1:53255560-53255579 | MS.gene007857:CDS | 40.0% |
| ! | TTATGACCGTGATGGAATTC+AGG | + | chr8.1:53255146-53255165 | MS.gene007857:CDS | 40.0% |
| !! | AATTTTGATCCTTCACCGGA+GGG | + | chr8.1:53255243-53255262 | MS.gene007857:CDS | 40.0% |
| CAGCATCCTGAATTCCATCA+CGG | - | chr8.1:53255155-53255174 | None:intergenic | 45.0% | |
| CTGAAATGGCTAAGAGGGTA+TGG | + | chr8.1:53255958-53255977 | MS.gene007857:CDS | 45.0% | |
| ! | ACTGGAGTTGCACAAGTTGA+TGG | + | chr8.1:53254967-53254986 | MS.gene007857:CDS | 45.0% |
| ! | CGAGCTAGTTTACTCTTGTG+TGG | - | chr8.1:53254913-53254932 | None:intergenic | 45.0% |
| ! | GTTGCTTTCACTGTAGTTCC+AGG | + | chr8.1:53256122-53256141 | MS.gene007857:CDS | 45.0% |
| !! | CAATTTTGATCCTTCACCGG+AGG | + | chr8.1:53255242-53255261 | MS.gene007857:CDS | 45.0% |
| GAATCCCCTTATGACCGTGA+TGG | + | chr8.1:53255138-53255157 | MS.gene007857:CDS | 50.0% | |
| GTGGCTGTGATAACTGTGAG+AGG | - | chr8.1:53256187-53256206 | None:intergenic | 50.0% | |
| ACAATTGCTCCCTCCGGTGA+AGG | - | chr8.1:53255255-53255274 | None:intergenic | 55.0% | |
| GCTGCAACAATTGCTCCCTC+CGG | - | chr8.1:53255261-53255280 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 53254880 | 53256241 | 53254880 | ID=MS.gene007857 |
| chr8.1 | mRNA | 53254880 | 53256241 | 53254880 | ID=MS.gene007857.t1;Parent=MS.gene007857 |
| chr8.1 | exon | 53254880 | 53256241 | 53254880 | ID=MS.gene007857.t1.exon1;Parent=MS.gene007857.t1 |
| chr8.1 | CDS | 53254880 | 53256241 | 53254880 | ID=cds.MS.gene007857.t1;Parent=MS.gene007857.t1 |
| Gene Sequence |
| Protein sequence |
