Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45832.t1 | XP_013455059.1 | 98.6 | 419 | 6 | 0 | 1 | 419 | 1 | 419 | 3.50E-221 | 777.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45832.t1 | F4KGE8 | 34.1 | 408 | 231 | 9 | 33 | 412 | 158 | 555 | 1.6e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45832.t1 | A0A072UHE7 | 98.6 | 419 | 6 | 0 | 1 | 419 | 1 | 419 | 2.5e-221 | 777.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene058087 | MS.gene45832 | 0.810869 | 9.30E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45832 | MS.gene27831 | PPI |
| MS.gene45832 | MS.gene032321 | PPI |
| MS.gene007857 | MS.gene45832 | PPI |
| MS.gene023604 | MS.gene45832 | PPI |
| MS.gene45832 | MS.gene058492 | PPI |
| MS.gene59941 | MS.gene45832 | PPI |
| MS.gene45832 | MS.gene026867 | PPI |
| MS.gene45832 | MS.gene32238 | PPI |
| MS.gene38998 | MS.gene45832 | PPI |
| MS.gene060213 | MS.gene45832 | PPI |
| MS.gene45832 | MS.gene63724 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45832.t1 | MTR_4g025420 | 98.568 | 419 | 6 | 0 | 1 | 419 | 1 | 419 | 0.0 | 861 |
| MS.gene45832.t1 | MTR_2g075910 | 40.351 | 399 | 220 | 5 | 25 | 412 | 62 | 453 | 1.61e-95 | 295 |
| MS.gene45832.t1 | MTR_8g087400 | 38.750 | 400 | 215 | 5 | 30 | 413 | 74 | 459 | 6.32e-95 | 293 |
| MS.gene45832.t1 | MTR_5g075180 | 41.133 | 406 | 201 | 9 | 15 | 413 | 66 | 440 | 6.93e-91 | 282 |
| MS.gene45832.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 61 | 439 | 4.20e-89 | 277 |
| MS.gene45832.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 70 | 448 | 5.19e-89 | 277 |
| MS.gene45832.t1 | MTR_0178s0030 | 38.035 | 397 | 219 | 4 | 38 | 419 | 145 | 529 | 8.03e-89 | 279 |
| MS.gene45832.t1 | MTR_3g462150 | 35.840 | 399 | 223 | 8 | 35 | 412 | 91 | 477 | 3.33e-71 | 232 |
| MS.gene45832.t1 | MTR_2g098420 | 26.885 | 305 | 177 | 12 | 130 | 407 | 295 | 580 | 8.18e-16 | 80.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45832.t1 | AT2G45260 | 76.761 | 426 | 91 | 4 | 1 | 419 | 1 | 425 | 0.0 | 686 |
| MS.gene45832.t1 | AT4G34080 | 75.887 | 282 | 61 | 3 | 24 | 299 | 1 | 281 | 1.05e-153 | 436 |
| MS.gene45832.t1 | AT4G33320 | 71.875 | 288 | 73 | 4 | 24 | 304 | 1 | 287 | 3.75e-143 | 410 |
| MS.gene45832.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 1.72e-94 | 292 |
| MS.gene45832.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 1.72e-94 | 292 |
| MS.gene45832.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 1.72e-94 | 292 |
| MS.gene45832.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 84 | 466 | 1.73e-94 | 292 |
| MS.gene45832.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 81 | 463 | 2.24e-94 | 291 |
| MS.gene45832.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 1.19e-93 | 289 |
| MS.gene45832.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 1.19e-93 | 289 |
| MS.gene45832.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 1.19e-93 | 289 |
| MS.gene45832.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 1.19e-93 | 289 |
| MS.gene45832.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 1.19e-93 | 289 |
| MS.gene45832.t1 | AT1G29300 | 40.863 | 394 | 202 | 7 | 30 | 413 | 80 | 452 | 1.43e-88 | 276 |
| MS.gene45832.t1 | AT2G30380 | 41.270 | 378 | 177 | 7 | 39 | 413 | 76 | 411 | 9.71e-86 | 268 |
| MS.gene45832.t1 | AT3G60680 | 37.468 | 395 | 211 | 7 | 37 | 414 | 120 | 495 | 6.13e-84 | 266 |
| MS.gene45832.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 2.17e-68 | 224 |
| MS.gene45832.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 2.17e-68 | 224 |
| MS.gene45832.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 160 | 555 | 1.67e-67 | 224 |
| MS.gene45832.t1 | AT4G36100 | 84.466 | 103 | 16 | 0 | 24 | 126 | 1 | 103 | 7.03e-57 | 187 |
| MS.gene45832.t1 | AT2G32130 | 43.902 | 123 | 64 | 2 | 38 | 159 | 36 | 154 | 1.24e-23 | 96.7 |
| MS.gene45832.t1 | AT5G12900 | 24.324 | 296 | 186 | 11 | 130 | 410 | 282 | 554 | 3.63e-11 | 65.5 |
Find 82 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTCTCGCTTTA+AGG | 0.079973 | 4.4:-76226021 | MS.gene45832:CDS |
| GACTGTTGTTCTCACGTAAT+TGG | 0.154101 | 4.4:+76226800 | None:intergenic |
| TTTCCACAGCTTCTGGATTC+TGG | 0.187824 | 4.4:+76226740 | None:intergenic |
| TGATGGTTATGCCTGGATTT+TGG | 0.227505 | 4.4:-76225649 | MS.gene45832:CDS |
| GTCAAGGTATTTCAGGTTAA+AGG | 0.227565 | 4.4:-76225758 | MS.gene45832:CDS |
| GCCAAATGTCAAGGTATTTC+AGG | 0.238187 | 4.4:-76225765 | MS.gene45832:CDS |
| CTCACGTAATTGGGCCTCTT+TGG | 0.240249 | 4.4:+76226810 | None:intergenic |
| GGATCTCTGAATCTTTATTC+TGG | 0.244273 | 4.4:+76226434 | None:intergenic |
| TAAAACTAGCCAAGTCAATT+TGG | 0.245512 | 4.4:-76225817 | MS.gene45832:CDS |
| ACTAGGGTTTCCACAGCTTC+TGG | 0.255097 | 4.4:+76226733 | None:intergenic |
| GAAAAGAATCTGAAGCTTAG+AGG | 0.283186 | 4.4:-76226361 | MS.gene45832:CDS |
| CGAAGCCACCAAACATTCTT+TGG | 0.287110 | 4.4:+76226101 | None:intergenic |
| GGAGAAACACACACTGGCTT+TGG | 0.323341 | 4.4:+76226547 | None:intergenic |
| TCTCCCTTAAAGCGAGAAAT+TGG | 0.330443 | 4.4:+76226017 | None:intergenic |
| ACCTGAAATACCTTGACATT+TGG | 0.347577 | 4.4:+76225764 | None:intergenic |
| TCACCAATTTCTCGCTTTAA+GGG | 0.348161 | 4.4:-76226020 | MS.gene45832:CDS |
| AGATCCGGAGTTAGATCAAC+AGG | 0.369847 | 4.4:+76226298 | None:intergenic |
| TACATATGCCAAAGAATGTT+TGG | 0.376902 | 4.4:-76226109 | MS.gene45832:CDS |
| AAAGAATCAGAAGATGGAAA+TGG | 0.389518 | 4.4:-76226328 | MS.gene45832:CDS |
| ACTGTTGTTCTCACGTAATT+GGG | 0.390567 | 4.4:+76226801 | None:intergenic |
| CGTGATCAAGAATCTGATAA+TGG | 0.398978 | 4.4:-76225702 | MS.gene45832:CDS |
| CAGAGTAAAGTTTATCTCTC+TGG | 0.401952 | 4.4:-76225608 | MS.gene45832:CDS |
| AAAGCCGAAAGTTGGATTGA+TGG | 0.415632 | 4.4:-76225666 | MS.gene45832:CDS |
| TAGCTTCTTCCATTGGTTGA+GGG | 0.420489 | 4.4:+76226767 | None:intergenic |
| ATAACCATCAATCCAACTTT+CGG | 0.420810 | 4.4:+76225662 | None:intergenic |
| GAGAAACACACACTGGCTTT+GGG | 0.424352 | 4.4:+76226548 | None:intergenic |
| TCTTTGGATGAACTACCATT+AGG | 0.431689 | 4.4:+76225927 | None:intergenic |
| GTAGCTTCTTCCATTGGTTG+AGG | 0.433895 | 4.4:+76226766 | None:intergenic |
| CTGAACTTAAGCATTTCTAC+AGG | 0.438407 | 4.4:-76226579 | MS.gene45832:CDS |
| AGATTCAGAGATCCATCAAC+TGG | 0.451384 | 4.4:-76226425 | MS.gene45832:CDS |
| GAGTATGAGCAGCTTGCAGC+TGG | 0.453517 | 4.4:+76226665 | None:intergenic |
| TGGTTCGTAGCTTCTTCCAT+TGG | 0.454285 | 4.4:+76226760 | None:intergenic |
| TTGGGCCTCTTTGGCTGCAG+TGG | 0.458655 | 4.4:+76226819 | None:intergenic |
| CGAAATTATGTGATGGGTGG+AGG | 0.459957 | 4.4:-76225872 | MS.gene45832:CDS |
| TTTAAGGGAGATCGACCCTT+TGG | 0.460669 | 4.4:-76226005 | MS.gene45832:CDS |
| CTGCAGGAGCAAATACCTAA+TGG | 0.467842 | 4.4:-76225942 | MS.gene45832:CDS |
| TCTGAAGCTTAGAGGTTTGT+CGG | 0.474219 | 4.4:-76226353 | MS.gene45832:CDS |
| ACAGAAGATGTAAAGAGATC+CGG | 0.489328 | 4.4:+76226283 | None:intergenic |
| AAGAATCAGAAGATGGAAAT+GGG | 0.496111 | 4.4:-76226327 | MS.gene45832:CDS |
| CTTCTTCCATTGGTTGAGGG+TGG | 0.498803 | 4.4:+76226770 | None:intergenic |
| AATGATGAAAAGCCGAAAGT+TGG | 0.500083 | 4.4:-76225674 | MS.gene45832:CDS |
| TGAGTTCTCCGATGTTTACA+TGG | 0.505237 | 4.4:-76225729 | MS.gene45832:CDS |
| GTTGGATTGATGGTTATGCC+TGG | 0.505523 | 4.4:-76225656 | MS.gene45832:CDS |
| ATCAACATGATGAAAGCAGC+TGG | 0.508364 | 4.4:-76226217 | MS.gene45832:CDS |
| GTGTAAAAGCCAAATTGACT+TGG | 0.514838 | 4.4:+76225808 | None:intergenic |
| AACATTTGGTTCGATTGAGT+TGG | 0.516699 | 4.4:+76226174 | None:intergenic |
| TGGGCCTCTTTGGCTGCAGT+GGG | 0.524633 | 4.4:+76226820 | None:intergenic |
| AGTTTATCTCTCTGGTATGA+AGG | 0.530434 | 4.4:-76225600 | MS.gene45832:CDS |
| CATGATGAAAGCAGCTGGGT+GGG | 0.531337 | 4.4:-76226212 | MS.gene45832:CDS |
| TTCTGACCTAGCACGTCCAA+AGG | 0.536648 | 4.4:+76225989 | None:intergenic |
| GCTTTCATCATGTTGATCAA+AGG | 0.541157 | 4.4:+76226223 | None:intergenic |
| TCAACTGGAAAAGCAGATAG+AGG | 0.543038 | 4.4:-76226410 | MS.gene45832:CDS |
| TAGAGGAGGCTAGTCAAAAG+AGG | 0.549461 | 4.4:-76226393 | MS.gene45832:CDS |
| GAAAGTCCACCCTCAACCAA+TGG | 0.552084 | 4.4:-76226776 | MS.gene45832:CDS |
| TTTCCCTGTTGATCTAACTC+CGG | 0.555285 | 4.4:-76226302 | MS.gene45832:CDS |
| CCTGAAAACGTATGAGGTCA+TGG | 0.558925 | 4.4:-76226479 | MS.gene45832:CDS |
| AATGGTAGTTCATCCAAAGA+TGG | 0.561925 | 4.4:-76225924 | MS.gene45832:CDS |
| GATCAGCGAAATTATGTGAT+GGG | 0.562322 | 4.4:-76225878 | MS.gene45832:CDS |
| TCGGCTAAAGAATCAGAAGA+TGG | 0.566268 | 4.4:-76226334 | MS.gene45832:CDS |
| ATATGCCAAAGAATGTTTGG+TGG | 0.568408 | 4.4:-76226106 | MS.gene45832:CDS |
| AGATCAGCGAAATTATGTGA+TGG | 0.575546 | 4.4:-76225879 | MS.gene45832:CDS |
| GCTACCCACTGCAGCCAAAG+AGG | 0.582351 | 4.4:-76226824 | MS.gene45832:CDS |
| GCAGCTAAACGCGAGTCTTG+AGG | 0.583544 | 4.4:+76226526 | None:intergenic |
| AAGGTATTTCAGGTTAAAGG+AGG | 0.584321 | 4.4:-76225755 | MS.gene45832:CDS |
| TCTGACCTAGCACGTCCAAA+GGG | 0.587757 | 4.4:+76225990 | None:intergenic |
| CTTCCACCAATCCAAAATCC+AGG | 0.590038 | 4.4:+76225638 | None:intergenic |
| TGAACTTAAGCATTTCTACA+GGG | 0.606736 | 4.4:-76226578 | MS.gene45832:CDS |
| AGAGGAGGCTAGTCAAAAGA+GGG | 0.611909 | 4.4:-76226392 | MS.gene45832:CDS |
| GAGCCTCCTGAAAACGTATG+AGG | 0.612638 | 4.4:-76226485 | MS.gene45832:CDS |
| GAACCAGAATCCAGAAGCTG+TGG | 0.615412 | 4.4:-76226743 | MS.gene45832:CDS |
| CAGCGAAATTATGTGATGGG+TGG | 0.621033 | 4.4:-76225875 | MS.gene45832:CDS |
| CACGCTTTCCATGTAAACAT+CGG | 0.635615 | 4.4:+76225721 | None:intergenic |
| AGGTATTTCAGGTTAAAGGA+GGG | 0.637523 | 4.4:-76225754 | MS.gene45832:CDS |
| TAACTTGTTTGTCAGCAGTG+TGG | 0.637561 | 4.4:+76226623 | None:intergenic |
| ACATGATGAAAGCAGCTGGG+TGG | 0.642099 | 4.4:-76226213 | MS.gene45832:CDS |
| ATCGACCCTTTGGACGTGCT+AGG | 0.648870 | 4.4:-76225995 | MS.gene45832:CDS |
| GGTAGTTCATCCAAAGATGG+AGG | 0.650176 | 4.4:-76225921 | MS.gene45832:CDS |
| TCAACATGATGAAAGCAGCT+GGG | 0.695774 | 4.4:-76226216 | MS.gene45832:CDS |
| ACTGGAAAAGCAGATAGAGG+AGG | 0.696578 | 4.4:-76226407 | MS.gene45832:CDS |
| TCTTGAGGAGAAACACACAC+TGG | 0.711119 | 4.4:+76226541 | None:intergenic |
| GATATAAGCTGATTTCAGAG+AGG | 0.711231 | 4.4:+76226687 | None:intergenic |
| GATCCGGAGTTAGATCAACA+GGG | 0.758490 | 4.4:+76226299 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAAAAACTTGGTAAAA+AGG | + | chr4.4:76226582-76226601 | None:intergenic | 20.0% |
| !!! | TGTGAATATTTTAGATACTA+GGG | + | chr4.4:76225701-76225720 | None:intergenic | 20.0% |
| !!! | TTGTGAATATTTTAGATACT+AGG | + | chr4.4:76225702-76225721 | None:intergenic | 20.0% |
| !!! | AATTTGGCTTTTACACAAAT+TGG | - | chr4.4:76226614-76226633 | MS.gene45832:CDS | 25.0% |
| AAAGAATCAGAAGATGGAAA+TGG | - | chr4.4:76226087-76226106 | MS.gene45832:CDS | 30.0% | |
| AAGAATCAGAAGATGGAAAT+GGG | - | chr4.4:76226088-76226107 | MS.gene45832:CDS | 30.0% | |
| AATTTCCCAAAAATGGAATC+TGG | + | chr4.4:76226453-76226472 | None:intergenic | 30.0% | |
| ATAACCATCAATCCAACTTT+CGG | + | chr4.4:76226756-76226775 | None:intergenic | 30.0% | |
| TAAAACTAGCCAAGTCAATT+TGG | - | chr4.4:76226598-76226617 | MS.gene45832:CDS | 30.0% | |
| TACATATGCCAAAGAATGTT+TGG | - | chr4.4:76226306-76226325 | MS.gene45832:CDS | 30.0% | |
| TGAACTTAAGCATTTCTACA+GGG | - | chr4.4:76225837-76225856 | MS.gene45832:CDS | 30.0% | |
| ! | CTTTTCGCATAAACAACATT+TGG | + | chr4.4:76226258-76226277 | None:intergenic | 30.0% |
| !! | AGAATCCAGATTCCATTTTT+GGG | - | chr4.4:76226445-76226464 | MS.gene45832:CDS | 30.0% |
| !!! | TGGCTAGTTTTAGAAAAACT+TGG | + | chr4.4:76226590-76226609 | None:intergenic | 30.0% |
| AATGATGAAAAGCCGAAAGT+TGG | - | chr4.4:76226741-76226760 | MS.gene45832:CDS | 35.0% | |
| AATGGTAGTTCATCCAAAGA+TGG | - | chr4.4:76226491-76226510 | MS.gene45832:CDS | 35.0% | |
| ACAGAAGATGTAAAGAGATC+CGG | + | chr4.4:76226135-76226154 | None:intergenic | 35.0% | |
| ACCTGAAATACCTTGACATT+TGG | + | chr4.4:76226654-76226673 | None:intergenic | 35.0% | |
| ACTGTTGTTCTCACGTAATT+GGG | + | chr4.4:76225617-76225636 | None:intergenic | 35.0% | |
| ACTTGGTAAAAAGGAGTTCT+TGG | + | chr4.4:76226573-76226592 | None:intergenic | 35.0% | |
| AGATCAGCGAAATTATGTGA+TGG | - | chr4.4:76226536-76226555 | MS.gene45832:CDS | 35.0% | |
| AGTTTATCTCTCTGGTATGA+AGG | - | chr4.4:76226815-76226834 | MS.gene45832:CDS | 35.0% | |
| ATATGCCAAAGAATGTTTGG+TGG | - | chr4.4:76226309-76226328 | MS.gene45832:CDS | 35.0% | |
| CAGAGTAAAGTTTATCTCTC+TGG | - | chr4.4:76226807-76226826 | MS.gene45832:CDS | 35.0% | |
| CGTGATCAAGAATCTGATAA+TGG | - | chr4.4:76226713-76226732 | MS.gene45832:CDS | 35.0% | |
| CTGAACTTAAGCATTTCTAC+AGG | - | chr4.4:76225836-76225855 | MS.gene45832:CDS | 35.0% | |
| GATCAGCGAAATTATGTGAT+GGG | - | chr4.4:76226537-76226556 | MS.gene45832:CDS | 35.0% | |
| GCTTTCATCATGTTGATCAA+AGG | + | chr4.4:76226195-76226214 | None:intergenic | 35.0% | |
| GGATCTCTGAATCTTTATTC+TGG | + | chr4.4:76225984-76226003 | None:intergenic | 35.0% | |
| GTGTAAAAGCCAAATTGACT+TGG | + | chr4.4:76226610-76226629 | None:intergenic | 35.0% | |
| TCACCAATTTCTCGCTTTAA+GGG | - | chr4.4:76226395-76226414 | MS.gene45832:CDS | 35.0% | |
| TCTTTGGATGAACTACCATT+AGG | + | chr4.4:76226491-76226510 | None:intergenic | 35.0% | |
| TTCACCAATTTCTCGCTTTA+AGG | - | chr4.4:76226394-76226413 | MS.gene45832:CDS | 35.0% | |
| ! | AACATTTGGTTCGATTGAGT+TGG | + | chr4.4:76226244-76226263 | None:intergenic | 35.0% |
| ! | CAGAATCCAGATTCCATTTT+TGG | - | chr4.4:76226444-76226463 | MS.gene45832:CDS | 35.0% |
| ! | GAAAAGAATCTGAAGCTTAG+AGG | - | chr4.4:76226054-76226073 | MS.gene45832:CDS | 35.0% |
| ! | GATATAAGCTGATTTCAGAG+AGG | + | chr4.4:76225731-76225750 | None:intergenic | 35.0% |
| ! | TGGATTTTATCGGGATCATA+GGG | + | chr4.4:76225775-76225794 | None:intergenic | 35.0% |
| ! | TTCTTTTGAGCCAAATGTCA+AGG | - | chr4.4:76226641-76226660 | MS.gene45832:CDS | 35.0% |
| !! | AAGGTATTTCAGGTTAAAGG+AGG | - | chr4.4:76226660-76226679 | MS.gene45832:CDS | 35.0% |
| !! | AGGTATTTCAGGTTAAAGGA+GGG | - | chr4.4:76226661-76226680 | MS.gene45832:CDS | 35.0% |
| !! | GTCAAGGTATTTCAGGTTAA+AGG | - | chr4.4:76226657-76226676 | MS.gene45832:CDS | 35.0% |
| AAAAACGATGCCTCCATCTT+TGG | + | chr4.4:76226507-76226526 | None:intergenic | 40.0% | |
| AAAGCCGAAAGTTGGATTGA+TGG | - | chr4.4:76226749-76226768 | MS.gene45832:CDS | 40.0% | |
| AGATTCAGAGATCCATCAAC+TGG | - | chr4.4:76225990-76226009 | MS.gene45832:CDS | 40.0% | |
| ATCAACATGATGAAAGCAGC+TGG | - | chr4.4:76226198-76226217 | MS.gene45832:CDS | 40.0% | |
| CACGCTTTCCATGTAAACAT+CGG | + | chr4.4:76226697-76226716 | None:intergenic | 40.0% | |
| CCTGCAGAATTTCCCAAAAA+TGG | + | chr4.4:76226460-76226479 | None:intergenic | 40.0% | |
| GACTGTTGTTCTCACGTAAT+TGG | + | chr4.4:76225618-76225637 | None:intergenic | 40.0% | |
| TCAACATGATGAAAGCAGCT+GGG | - | chr4.4:76226199-76226218 | MS.gene45832:CDS | 40.0% | |
| TCAACTGGAAAAGCAGATAG+AGG | - | chr4.4:76226005-76226024 | MS.gene45832:CDS | 40.0% | |
| TCGGCTAAAGAATCAGAAGA+TGG | - | chr4.4:76226081-76226100 | MS.gene45832:CDS | 40.0% | |
| TCTCCCTTAAAGCGAGAAAT+TGG | + | chr4.4:76226401-76226420 | None:intergenic | 40.0% | |
| TGAGTTCTCCGATGTTTACA+TGG | - | chr4.4:76226686-76226705 | MS.gene45832:CDS | 40.0% | |
| TTTCCCTGTTGATCTAACTC+CGG | - | chr4.4:76226113-76226132 | MS.gene45832:CDS | 40.0% | |
| ! | GCCAAATGTCAAGGTATTTC+AGG | - | chr4.4:76226650-76226669 | MS.gene45832:CDS | 40.0% |
| ! | GTCAGCAGTGTGGATTTTAT+CGG | + | chr4.4:76225785-76225804 | None:intergenic | 40.0% |
| ! | GTGGATTTTATCGGGATCAT+AGG | + | chr4.4:76225776-76225795 | None:intergenic | 40.0% |
| ! | GTTATGCCTGGATTTTGGAT+TGG | - | chr4.4:76226771-76226790 | MS.gene45832:CDS | 40.0% |
| ! | TAGCTTCTTCCATTGGTTGA+GGG | + | chr4.4:76225651-76225670 | None:intergenic | 40.0% |
| ! | TCAGCAGTGTGGATTTTATC+GGG | + | chr4.4:76225784-76225803 | None:intergenic | 40.0% |
| ! | TCTGAAGCTTAGAGGTTTGT+CGG | - | chr4.4:76226062-76226081 | MS.gene45832:CDS | 40.0% |
| ! | TGATGGTTATGCCTGGATTT+TGG | - | chr4.4:76226766-76226785 | MS.gene45832:CDS | 40.0% |
| !! | CCATTTTTGGGAAATTCTGC+AGG | - | chr4.4:76226457-76226476 | MS.gene45832:CDS | 40.0% |
| !! | CTATCTGCTTTTCCAGTTGA+TGG | + | chr4.4:76226005-76226024 | None:intergenic | 40.0% |
| !! | TAACTTGTTTGTCAGCAGTG+TGG | + | chr4.4:76225795-76225814 | None:intergenic | 40.0% |
| !!! | AAGATGGAGGCATCGTTTTT+TGG | - | chr4.4:76226507-76226526 | MS.gene45832:CDS | 40.0% |
| ACTGGAAAAGCAGATAGAGG+AGG | - | chr4.4:76226008-76226027 | MS.gene45832:CDS | 45.0% | |
| AGATCCGGAGTTAGATCAAC+AGG | + | chr4.4:76226120-76226139 | None:intergenic | 45.0% | |
| CCTGAAAACGTATGAGGTCA+TGG | - | chr4.4:76225936-76225955 | MS.gene45832:CDS | 45.0% | |
| CGAAGCCACCAAACATTCTT+TGG | + | chr4.4:76226317-76226336 | None:intergenic | 45.0% | |
| CTGCAGGAGCAAATACCTAA+TGG | - | chr4.4:76226473-76226492 | MS.gene45832:CDS | 45.0% | |
| CTTCCACCAATCCAAAATCC+AGG | + | chr4.4:76226780-76226799 | None:intergenic | 45.0% | |
| GATCCGGAGTTAGATCAACA+GGG | + | chr4.4:76226119-76226138 | None:intergenic | 45.0% | |
| GGTAGTTCATCCAAAGATGG+AGG | - | chr4.4:76226494-76226513 | MS.gene45832:CDS | 45.0% | |
| TCTTGAGGAGAAACACACAC+TGG | + | chr4.4:76225877-76225896 | None:intergenic | 45.0% | |
| TGGTTCGTAGCTTCTTCCAT+TGG | + | chr4.4:76225658-76225677 | None:intergenic | 45.0% | |
| TTTAAGGGAGATCGACCCTT+TGG | - | chr4.4:76226410-76226429 | MS.gene45832:CDS | 45.0% | |
| TTTCCACAGCTTCTGGATTC+TGG | + | chr4.4:76225678-76225697 | None:intergenic | 45.0% | |
| ! | AGAGGAGGCTAGTCAAAAGA+GGG | - | chr4.4:76226023-76226042 | MS.gene45832:CDS | 45.0% |
| ! | CAGCGAAATTATGTGATGGG+TGG | - | chr4.4:76226540-76226559 | MS.gene45832:CDS | 45.0% |
| ! | CCATGACCTCATACGTTTTC+AGG | + | chr4.4:76225939-76225958 | None:intergenic | 45.0% |
| ! | GTAGCTTCTTCCATTGGTTG+AGG | + | chr4.4:76225652-76225671 | None:intergenic | 45.0% |
| ! | GTTGGATTGATGGTTATGCC+TGG | - | chr4.4:76226759-76226778 | MS.gene45832:CDS | 45.0% |
| ! | TAGAGGAGGCTAGTCAAAAG+AGG | - | chr4.4:76226022-76226041 | MS.gene45832:CDS | 45.0% |
| !! | ATGCCTGGATTTTGGATTGG+TGG | - | chr4.4:76226774-76226793 | MS.gene45832:CDS | 45.0% |
| !! | CGAAATTATGTGATGGGTGG+AGG | - | chr4.4:76226543-76226562 | MS.gene45832:CDS | 45.0% |
| !! | GAGAAACACACACTGGCTTT+GGG | + | chr4.4:76225870-76225889 | None:intergenic | 45.0% |
| !! | TGACCTCATACGTTTTCAGG+AGG | + | chr4.4:76225936-76225955 | None:intergenic | 45.0% |
| ACATGATGAAAGCAGCTGGG+TGG | - | chr4.4:76226202-76226221 | MS.gene45832:CDS | 50.0% | |
| ACTAGGGTTTCCACAGCTTC+TGG | + | chr4.4:76225685-76225704 | None:intergenic | 50.0% | |
| CATGATGAAAGCAGCTGGGT+GGG | - | chr4.4:76226203-76226222 | MS.gene45832:CDS | 50.0% | |
| CTCACGTAATTGGGCCTCTT+TGG | + | chr4.4:76225608-76225627 | None:intergenic | 50.0% | |
| GAAAGTCCACCCTCAACCAA+TGG | - | chr4.4:76225639-76225658 | MS.gene45832:CDS | 50.0% | |
| GAACCAGAATCCAGAAGCTG+TGG | - | chr4.4:76225672-76225691 | MS.gene45832:CDS | 50.0% | |
| GAGCCTCCTGAAAACGTATG+AGG | - | chr4.4:76225930-76225949 | MS.gene45832:CDS | 50.0% | |
| TCTGACCTAGCACGTCCAAA+GGG | + | chr4.4:76226428-76226447 | None:intergenic | 50.0% | |
| TTCTGACCTAGCACGTCCAA+AGG | + | chr4.4:76226429-76226448 | None:intergenic | 50.0% | |
| ! | CTTCTTCCATTGGTTGAGGG+TGG | + | chr4.4:76225648-76225667 | None:intergenic | 50.0% |
| !! | GGAGAAACACACACTGGCTT+TGG | + | chr4.4:76225871-76225890 | None:intergenic | 50.0% |
| ATCGACCCTTTGGACGTGCT+AGG | - | chr4.4:76226420-76226439 | MS.gene45832:CDS | 55.0% | |
| GAGTATGAGCAGCTTGCAGC+TGG | + | chr4.4:76225753-76225772 | None:intergenic | 55.0% | |
| GCAGCTAAACGCGAGTCTTG+AGG | + | chr4.4:76225892-76225911 | None:intergenic | 55.0% | |
| GCTACCCACTGCAGCCAAAG+AGG | - | chr4.4:76225591-76225610 | MS.gene45832:CDS | 60.0% | |
| TGGGCCTCTTTGGCTGCAGT+GGG | + | chr4.4:76225598-76225617 | None:intergenic | 60.0% | |
| TTGGGCCTCTTTGGCTGCAG+TGG | + | chr4.4:76225599-76225618 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 76225589 | 76226848 | 76225589 | ID=MS.gene45832 |
| chr4.4 | mRNA | 76225589 | 76226848 | 76225589 | ID=MS.gene45832.t1;Parent=MS.gene45832 |
| chr4.4 | exon | 76225589 | 76226848 | 76225589 | ID=MS.gene45832.t1.exon1;Parent=MS.gene45832.t1 |
| chr4.4 | CDS | 76225589 | 76226848 | 76225589 | ID=cds.MS.gene45832.t1;Parent=MS.gene45832.t1 |
| Gene Sequence |
| Protein sequence |
