Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059205.t1 | XP_013455059.1 | 98.8 | 419 | 5 | 0 | 1 | 419 | 1 | 419 | 1.20E-221 | 778.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059205.t1 | F4KGE8 | 34.1 | 408 | 231 | 9 | 33 | 412 | 158 | 555 | 1.6e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059205.t1 | A0A072UHE7 | 98.8 | 419 | 5 | 0 | 1 | 419 | 1 | 419 | 8.8e-222 | 778.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene060213 | MS.gene059205 | PPI |
| MS.gene007857 | MS.gene059205 | PPI |
| MS.gene059205 | MS.gene32238 | PPI |
| MS.gene023604 | MS.gene059205 | PPI |
| MS.gene059205 | MS.gene63724 | PPI |
| MS.gene059205 | MS.gene27831 | PPI |
| MS.gene059205 | MS.gene032321 | PPI |
| MS.gene026867 | MS.gene059205 | PPI |
| MS.gene59941 | MS.gene059205 | PPI |
| MS.gene059205 | MS.gene058492 | PPI |
| MS.gene38998 | MS.gene059205 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059205.t1 | MTR_4g025420 | 98.807 | 419 | 5 | 0 | 1 | 419 | 1 | 419 | 0.0 | 862 |
| MS.gene059205.t1 | MTR_2g075910 | 40.351 | 399 | 220 | 5 | 25 | 412 | 62 | 453 | 3.11e-95 | 294 |
| MS.gene059205.t1 | MTR_8g087400 | 38.750 | 400 | 215 | 5 | 30 | 413 | 74 | 459 | 2.62e-94 | 291 |
| MS.gene059205.t1 | MTR_5g075180 | 41.133 | 406 | 201 | 9 | 15 | 413 | 66 | 440 | 1.49e-90 | 281 |
| MS.gene059205.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 61 | 439 | 1.12e-88 | 276 |
| MS.gene059205.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 70 | 448 | 1.43e-88 | 276 |
| MS.gene059205.t1 | MTR_0178s0030 | 38.035 | 397 | 219 | 4 | 38 | 419 | 145 | 529 | 1.68e-88 | 278 |
| MS.gene059205.t1 | MTR_3g462150 | 35.840 | 399 | 223 | 8 | 35 | 412 | 91 | 477 | 3.41e-71 | 232 |
| MS.gene059205.t1 | MTR_2g098420 | 26.557 | 305 | 178 | 12 | 130 | 407 | 295 | 580 | 2.64e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene059205.t1 | AT2G45260 | 76.526 | 426 | 92 | 4 | 1 | 419 | 1 | 425 | 0.0 | 684 |
| MS.gene059205.t1 | AT4G34080 | 75.532 | 282 | 62 | 3 | 24 | 299 | 1 | 281 | 8.13e-153 | 434 |
| MS.gene059205.t1 | AT4G33320 | 72.569 | 288 | 71 | 4 | 24 | 304 | 1 | 287 | 2.67e-144 | 412 |
| MS.gene059205.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 81 | 463 | 5.71e-94 | 291 |
| MS.gene059205.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 84 | 466 | 6.22e-94 | 291 |
| MS.gene059205.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 6.45e-94 | 290 |
| MS.gene059205.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 6.45e-94 | 290 |
| MS.gene059205.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 6.45e-94 | 290 |
| MS.gene059205.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 3.68e-93 | 288 |
| MS.gene059205.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 3.68e-93 | 288 |
| MS.gene059205.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 3.68e-93 | 288 |
| MS.gene059205.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 3.68e-93 | 288 |
| MS.gene059205.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 3.68e-93 | 288 |
| MS.gene059205.t1 | AT1G29300 | 40.909 | 396 | 199 | 7 | 30 | 413 | 80 | 452 | 9.31e-89 | 277 |
| MS.gene059205.t1 | AT2G30380 | 41.005 | 378 | 178 | 7 | 39 | 413 | 76 | 411 | 8.54e-85 | 265 |
| MS.gene059205.t1 | AT3G60680 | 37.468 | 395 | 211 | 7 | 37 | 414 | 120 | 495 | 9.30e-84 | 265 |
| MS.gene059205.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.91e-68 | 225 |
| MS.gene059205.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.91e-68 | 225 |
| MS.gene059205.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 160 | 555 | 1.55e-67 | 224 |
| MS.gene059205.t1 | AT4G36100 | 84.466 | 103 | 16 | 0 | 24 | 126 | 1 | 103 | 6.95e-57 | 187 |
| MS.gene059205.t1 | AT2G32130 | 43.902 | 123 | 64 | 2 | 38 | 159 | 36 | 154 | 1.27e-23 | 96.7 |
Find 83 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTCTCGCTTTA+AGG | 0.079973 | 4.1:-73345970 | MS.gene059205:CDS |
| GACTGTTGTTCTCACGTAAT+TGG | 0.154101 | 4.1:+73346749 | None:intergenic |
| TTTCCACAGCTTCTGGATTC+TGG | 0.187824 | 4.1:+73346689 | None:intergenic |
| TGATGGTTATGCCTGGATTT+TGG | 0.227505 | 4.1:-73345598 | MS.gene059205:CDS |
| CTCACGTAATTGGGCCTCTT+TGG | 0.240249 | 4.1:+73346759 | None:intergenic |
| GGATCTCTGAATCTTTATTC+TGG | 0.244273 | 4.1:+73346383 | None:intergenic |
| TAAAACTAGCCAAGTCAATT+TGG | 0.245512 | 4.1:-73345766 | MS.gene059205:CDS |
| ACTAGGGTTTCCACAGCTTC+TGG | 0.255097 | 4.1:+73346682 | None:intergenic |
| CGAAGCCACCAAACATTCTT+TGG | 0.287110 | 4.1:+73346050 | None:intergenic |
| GAAAAGAATCTGAAGCTTAG+AGG | 0.290385 | 4.1:-73346310 | MS.gene059205:CDS |
| GTCAAGGTATTCCAGGTTAA+AGG | 0.318342 | 4.1:-73345707 | MS.gene059205:CDS |
| GGAGAAACACACACTGGCTT+TGG | 0.323341 | 4.1:+73346496 | None:intergenic |
| TCTCCCTTAAAGCGAGAAAT+TGG | 0.330443 | 4.1:+73345966 | None:intergenic |
| ACCTGGAATACCTTGACATT+TGG | 0.347577 | 4.1:+73345713 | None:intergenic |
| AGATCTGGAGTTAGATCAAC+AGG | 0.347774 | 4.1:+73346247 | None:intergenic |
| TCACCAATTTCTCGCTTTAA+GGG | 0.348161 | 4.1:-73345969 | MS.gene059205:CDS |
| CAGAGTAAGGTTTATCTCTC+TGG | 0.365421 | 4.1:-73345557 | MS.gene059205:CDS |
| TACATATGCCAAAGAATGTT+TGG | 0.376902 | 4.1:-73346058 | MS.gene059205:CDS |
| AAAGAATCAGAAGATGGAAA+TGG | 0.389518 | 4.1:-73346277 | MS.gene059205:CDS |
| ACTGTTGTTCTCACGTAATT+GGG | 0.390567 | 4.1:+73346750 | None:intergenic |
| GGGAAGTGTGATTCAGAGTA+AGG | 0.407934 | 4.1:-73345570 | MS.gene059205:CDS |
| TGTGATCAAGAATCTGATAA+TGG | 0.415047 | 4.1:-73345651 | MS.gene059205:CDS |
| AAAGCCGAAAGTTGGATTGA+TGG | 0.415632 | 4.1:-73345615 | MS.gene059205:CDS |
| TAGCTTCTTCCATTGGTTGA+GGG | 0.420489 | 4.1:+73346716 | None:intergenic |
| ATAACCATCAATCCAACTTT+CGG | 0.420810 | 4.1:+73345611 | None:intergenic |
| GAGAAACACACACTGGCTTT+GGG | 0.424352 | 4.1:+73346497 | None:intergenic |
| GCCAAATGTCAAGGTATTCC+AGG | 0.429244 | 4.1:-73345714 | MS.gene059205:CDS |
| GTAGCTTCTTCCATTGGTTG+AGG | 0.433895 | 4.1:+73346715 | None:intergenic |
| CGAGTTCTCCGATGTTTACA+TGG | 0.438330 | 4.1:-73345678 | MS.gene059205:CDS |
| CTGAACTTAAGCATTTCTAC+AGG | 0.438407 | 4.1:-73346528 | MS.gene059205:CDS |
| ACAGAAGAAGTAAAGAGATC+TGG | 0.442440 | 4.1:+73346232 | None:intergenic |
| AGATTCAGAGATCCATCAAC+TGG | 0.451384 | 4.1:-73346374 | MS.gene059205:CDS |
| GAGTATGAGCAGCTTGCAGC+TGG | 0.453517 | 4.1:+73346614 | None:intergenic |
| TTTAAGGGAGATCGACCCTT+TGG | 0.453751 | 4.1:-73345954 | MS.gene059205:CDS |
| TGGTTCGTAGCTTCTTCCAT+TGG | 0.454285 | 4.1:+73346709 | None:intergenic |
| TTGGGCCTCTTTGGCTGCAG+TGG | 0.458655 | 4.1:+73346768 | None:intergenic |
| CGAAATTATGTGATGGGTGG+AGG | 0.459957 | 4.1:-73345821 | MS.gene059205:CDS |
| TCTGAAGCTTAGAGGTTTGT+CGG | 0.474219 | 4.1:-73346302 | MS.gene059205:CDS |
| AAGAATCAGAAGATGGAAAT+GGG | 0.496111 | 4.1:-73346276 | MS.gene059205:CDS |
| CTTCTTCCATTGGTTGAGGG+TGG | 0.498803 | 4.1:+73346719 | None:intergenic |
| AATGATGAAAAGCCGAAAGT+TGG | 0.500083 | 4.1:-73345623 | MS.gene059205:CDS |
| GTTGGATTGATGGTTATGCC+TGG | 0.505523 | 4.1:-73345605 | MS.gene059205:CDS |
| ATCAACATGATGAAAGCAGC+TGG | 0.508364 | 4.1:-73346166 | MS.gene059205:CDS |
| GTGTAAAAGCCAAATTGACT+TGG | 0.514838 | 4.1:+73345757 | None:intergenic |
| AACATTTGGTTCGATTGAGT+TGG | 0.516699 | 4.1:+73346123 | None:intergenic |
| AGATCTCTTTACTTCTTCTG+TGG | 0.521292 | 4.1:-73346230 | MS.gene059205:CDS |
| TGGGCCTCTTTGGCTGCAGT+GGG | 0.524633 | 4.1:+73346769 | None:intergenic |
| GGTTTATCTCTCTGGTATGA+AGG | 0.530434 | 4.1:-73345549 | MS.gene059205:CDS |
| CATGATGAAAGCAGCTGGGT+GGG | 0.531337 | 4.1:-73346161 | MS.gene059205:CDS |
| ACTCGCTCCCTCCTTTAACC+TGG | 0.539080 | 4.1:+73345696 | None:intergenic |
| GCTTTCATCATGTTGATCAA+AGG | 0.541157 | 4.1:+73346172 | None:intergenic |
| TCAACTGGAAAAGCAGATAG+AGG | 0.543038 | 4.1:-73346359 | MS.gene059205:CDS |
| TAGAGGAGGCTAGTCAAAAG+AGG | 0.549461 | 4.1:-73346342 | MS.gene059205:CDS |
| GAAAGTCCACCCTCAACCAA+TGG | 0.552084 | 4.1:-73346725 | MS.gene059205:CDS |
| CCTGAAAACGTATGAGGTCA+TGG | 0.558925 | 4.1:-73346428 | MS.gene059205:CDS |
| GATCAGCGAAATTATGTGAT+GGG | 0.562322 | 4.1:-73345827 | MS.gene059205:CDS |
| TCGGCTAAAGAATCAGAAGA+TGG | 0.566268 | 4.1:-73346283 | MS.gene059205:CDS |
| ATATGCCAAAGAATGTTTGG+TGG | 0.568408 | 4.1:-73346055 | MS.gene059205:CDS |
| AGTGGTAGTTCATCCAAAGA+TGG | 0.575405 | 4.1:-73345873 | MS.gene059205:CDS |
| AGATCAGCGAAATTATGTGA+TGG | 0.575546 | 4.1:-73345828 | MS.gene059205:CDS |
| GCTACCCACTGCAGCCAAAG+AGG | 0.582351 | 4.1:-73346773 | MS.gene059205:CDS |
| GCAGCTAAACGCGAGTCTTG+AGG | 0.583544 | 4.1:+73346475 | None:intergenic |
| TTCTGACCTAGCATGTCCAA+AGG | 0.588164 | 4.1:+73345938 | None:intergenic |
| TGAACTTAAGCATTTCTACA+GGG | 0.606736 | 4.1:-73346527 | MS.gene059205:CDS |
| TCTGACCTAGCATGTCCAAA+GGG | 0.607496 | 4.1:+73345939 | None:intergenic |
| AGAGGAGGCTAGTCAAAAGA+GGG | 0.611909 | 4.1:-73346341 | MS.gene059205:CDS |
| GAGCCTCCTGAAAACGTATG+AGG | 0.612638 | 4.1:-73346434 | MS.gene059205:CDS |
| AAGGTATTCCAGGTTAAAGG+AGG | 0.614132 | 4.1:-73345704 | MS.gene059205:CDS |
| GAACCAGAATCCAGAAGCTG+TGG | 0.615412 | 4.1:-73346692 | MS.gene059205:CDS |
| CAGCGAAATTATGTGATGGG+TGG | 0.621033 | 4.1:-73345824 | MS.gene059205:CDS |
| TAACTTGTTTGTCAGCAGTG+TGG | 0.637561 | 4.1:+73346572 | None:intergenic |
| ACATGATGAAAGCAGCTGGG+TGG | 0.642099 | 4.1:-73346162 | MS.gene059205:CDS |
| CACACTTTCCATGTAAACAT+CGG | 0.647565 | 4.1:+73345670 | None:intergenic |
| GGTAGTTCATCCAAAGATGG+AGG | 0.663656 | 4.1:-73345870 | MS.gene059205:CDS |
| TCTTTGGATGAACTACCACT+AGG | 0.667755 | 4.1:+73345876 | None:intergenic |
| ATCGACCCTTTGGACATGCT+AGG | 0.675961 | 4.1:-73345944 | MS.gene059205:CDS |
| AGGTATTCCAGGTTAAAGGA+GGG | 0.678179 | 4.1:-73345703 | MS.gene059205:CDS |
| CTGCAGGAGCAAATACCTAG+TGG | 0.683301 | 4.1:-73345891 | MS.gene059205:CDS |
| TCAACATGATGAAAGCAGCT+GGG | 0.695774 | 4.1:-73346165 | MS.gene059205:CDS |
| ACTGGAAAAGCAGATAGAGG+AGG | 0.696578 | 4.1:-73346356 | MS.gene059205:CDS |
| TCTTGAGGAGAAACACACAC+TGG | 0.711119 | 4.1:+73346490 | None:intergenic |
| GATATAAGCTGATTTCAGAG+AGG | 0.711231 | 4.1:+73346636 | None:intergenic |
| GATCTGGAGTTAGATCAACA+GGG | 0.781550 | 4.1:+73346248 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAAAAACTTGGTAAAA+AGG | + | chr4.1:73346531-73346550 | None:intergenic | 20.0% |
| !!! | TGTGAATATTTTAGATACTA+GGG | + | chr4.1:73345650-73345669 | None:intergenic | 20.0% |
| !!! | TTGTGAATATTTTAGATACT+AGG | + | chr4.1:73345651-73345670 | None:intergenic | 20.0% |
| !!! | AATTTGGCTTTTACACAAAT+TGG | - | chr4.1:73346563-73346582 | MS.gene059205:CDS | 25.0% |
| AAAGAATCAGAAGATGGAAA+TGG | - | chr4.1:73346036-73346055 | MS.gene059205:CDS | 30.0% | |
| AAGAATCAGAAGATGGAAAT+GGG | - | chr4.1:73346037-73346056 | MS.gene059205:CDS | 30.0% | |
| AATTTCCCAAAAATGGAATC+TGG | + | chr4.1:73346402-73346421 | None:intergenic | 30.0% | |
| ATAACCATCAATCCAACTTT+CGG | + | chr4.1:73346705-73346724 | None:intergenic | 30.0% | |
| TAAAACTAGCCAAGTCAATT+TGG | - | chr4.1:73346547-73346566 | MS.gene059205:CDS | 30.0% | |
| TACATATGCCAAAGAATGTT+TGG | - | chr4.1:73346255-73346274 | MS.gene059205:CDS | 30.0% | |
| TGAACTTAAGCATTTCTACA+GGG | - | chr4.1:73345786-73345805 | MS.gene059205:CDS | 30.0% | |
| TGTGATCAAGAATCTGATAA+TGG | - | chr4.1:73346662-73346681 | MS.gene059205:CDS | 30.0% | |
| ! | CTTTTCGCATAAACAACATT+TGG | + | chr4.1:73346207-73346226 | None:intergenic | 30.0% |
| !! | AGAATCCAGATTCCATTTTT+GGG | - | chr4.1:73346394-73346413 | MS.gene059205:CDS | 30.0% |
| !!! | TGGCTAGTTTTAGAAAAACT+TGG | + | chr4.1:73346539-73346558 | None:intergenic | 30.0% |
| AATGATGAAAAGCCGAAAGT+TGG | - | chr4.1:73346690-73346709 | MS.gene059205:CDS | 35.0% | |
| ACAGAAGAAGTAAAGAGATC+TGG | + | chr4.1:73346084-73346103 | None:intergenic | 35.0% | |
| ACTGTTGTTCTCACGTAATT+GGG | + | chr4.1:73345566-73345585 | None:intergenic | 35.0% | |
| ACTTGGTAAAAAGGAGTTCT+TGG | + | chr4.1:73346522-73346541 | None:intergenic | 35.0% | |
| AGATCAGCGAAATTATGTGA+TGG | - | chr4.1:73346485-73346504 | MS.gene059205:CDS | 35.0% | |
| AGATCTCTTTACTTCTTCTG+TGG | - | chr4.1:73346083-73346102 | MS.gene059205:CDS | 35.0% | |
| ATATGCCAAAGAATGTTTGG+TGG | - | chr4.1:73346258-73346277 | MS.gene059205:CDS | 35.0% | |
| CACACTTTCCATGTAAACAT+CGG | + | chr4.1:73346646-73346665 | None:intergenic | 35.0% | |
| CTGAACTTAAGCATTTCTAC+AGG | - | chr4.1:73345785-73345804 | MS.gene059205:CDS | 35.0% | |
| GATCAGCGAAATTATGTGAT+GGG | - | chr4.1:73346486-73346505 | MS.gene059205:CDS | 35.0% | |
| GCTTTCATCATGTTGATCAA+AGG | + | chr4.1:73346144-73346163 | None:intergenic | 35.0% | |
| GGATCTCTGAATCTTTATTC+TGG | + | chr4.1:73345933-73345952 | None:intergenic | 35.0% | |
| GTGTAAAAGCCAAATTGACT+TGG | + | chr4.1:73346559-73346578 | None:intergenic | 35.0% | |
| TCACCAATTTCTCGCTTTAA+GGG | - | chr4.1:73346344-73346363 | MS.gene059205:CDS | 35.0% | |
| TTCACCAATTTCTCGCTTTA+AGG | - | chr4.1:73346343-73346362 | MS.gene059205:CDS | 35.0% | |
| ! | AACATTTGGTTCGATTGAGT+TGG | + | chr4.1:73346193-73346212 | None:intergenic | 35.0% |
| ! | CAGAATCCAGATTCCATTTT+TGG | - | chr4.1:73346393-73346412 | MS.gene059205:CDS | 35.0% |
| ! | GAAAAGAATCTGAAGCTTAG+AGG | - | chr4.1:73346003-73346022 | MS.gene059205:CDS | 35.0% |
| ! | GATATAAGCTGATTTCAGAG+AGG | + | chr4.1:73345680-73345699 | None:intergenic | 35.0% |
| ! | TTATGCCTGGATTTTGGATT+GGG | - | chr4.1:73346721-73346740 | MS.gene059205:CDS | 35.0% |
| ! | TTCTTTTGAGCCAAATGTCA+AGG | - | chr4.1:73346590-73346609 | MS.gene059205:CDS | 35.0% |
| AAAGCCGAAAGTTGGATTGA+TGG | - | chr4.1:73346698-73346717 | MS.gene059205:CDS | 40.0% | |
| ACCTGGAATACCTTGACATT+TGG | + | chr4.1:73346603-73346622 | None:intergenic | 40.0% | |
| AGATTCAGAGATCCATCAAC+TGG | - | chr4.1:73345939-73345958 | MS.gene059205:CDS | 40.0% | |
| AGGTATTCCAGGTTAAAGGA+GGG | - | chr4.1:73346610-73346629 | MS.gene059205:CDS | 40.0% | |
| AGTGGTAGTTCATCCAAAGA+TGG | - | chr4.1:73346440-73346459 | MS.gene059205:CDS | 40.0% | |
| ATCAACATGATGAAAGCAGC+TGG | - | chr4.1:73346147-73346166 | MS.gene059205:CDS | 40.0% | |
| CAGAGTAAGGTTTATCTCTC+TGG | - | chr4.1:73346756-73346775 | MS.gene059205:CDS | 40.0% | |
| CCTGCAGAATTTCCCAAAAA+TGG | + | chr4.1:73346409-73346428 | None:intergenic | 40.0% | |
| GACTGTTGTTCTCACGTAAT+TGG | + | chr4.1:73345567-73345586 | None:intergenic | 40.0% | |
| GGTTTATCTCTCTGGTATGA+AGG | - | chr4.1:73346764-73346783 | MS.gene059205:CDS | 40.0% | |
| TCAACATGATGAAAGCAGCT+GGG | - | chr4.1:73346148-73346167 | MS.gene059205:CDS | 40.0% | |
| TCAACTGGAAAAGCAGATAG+AGG | - | chr4.1:73345954-73345973 | MS.gene059205:CDS | 40.0% | |
| TCGGCTAAAGAATCAGAAGA+TGG | - | chr4.1:73346030-73346049 | MS.gene059205:CDS | 40.0% | |
| TCTCCCTTAAAGCGAGAAAT+TGG | + | chr4.1:73346350-73346369 | None:intergenic | 40.0% | |
| TCTTTGGATGAACTACCACT+AGG | + | chr4.1:73346440-73346459 | None:intergenic | 40.0% | |
| ! | AAGGTATTCCAGGTTAAAGG+AGG | - | chr4.1:73346609-73346628 | MS.gene059205:CDS | 40.0% |
| ! | AGATCTGGAGTTAGATCAAC+AGG | + | chr4.1:73346069-73346088 | None:intergenic | 40.0% |
| ! | GATCTGGAGTTAGATCAACA+GGG | + | chr4.1:73346068-73346087 | None:intergenic | 40.0% |
| ! | GTCAAGGTATTCCAGGTTAA+AGG | - | chr4.1:73346606-73346625 | MS.gene059205:CDS | 40.0% |
| ! | GTCAGCAGTGTGGATTTTAT+CGG | + | chr4.1:73345734-73345753 | None:intergenic | 40.0% |
| ! | GTTATGCCTGGATTTTGGAT+TGG | - | chr4.1:73346720-73346739 | MS.gene059205:CDS | 40.0% |
| ! | TAGCTTCTTCCATTGGTTGA+GGG | + | chr4.1:73345600-73345619 | None:intergenic | 40.0% |
| ! | TATGCCTGGATTTTGGATTG+GGG | - | chr4.1:73346722-73346741 | MS.gene059205:CDS | 40.0% |
| ! | TCAGCAGTGTGGATTTTATC+GGG | + | chr4.1:73345733-73345752 | None:intergenic | 40.0% |
| ! | TCTGAAGCTTAGAGGTTTGT+CGG | - | chr4.1:73346011-73346030 | MS.gene059205:CDS | 40.0% |
| ! | TGATGGTTATGCCTGGATTT+TGG | - | chr4.1:73346715-73346734 | MS.gene059205:CDS | 40.0% |
| ! | TGGATTTTATCGGGGTCATA+GGG | + | chr4.1:73345724-73345743 | None:intergenic | 40.0% |
| !! | CCATTTTTGGGAAATTCTGC+AGG | - | chr4.1:73346406-73346425 | MS.gene059205:CDS | 40.0% |
| !! | CTATCTGCTTTTCCAGTTGA+TGG | + | chr4.1:73345954-73345973 | None:intergenic | 40.0% |
| !! | TAACTTGTTTGTCAGCAGTG+TGG | + | chr4.1:73345744-73345763 | None:intergenic | 40.0% |
| AAAAACGACGCCTCCATCTT+TGG | + | chr4.1:73346456-73346475 | None:intergenic | 45.0% | |
| ACTGGAAAAGCAGATAGAGG+AGG | - | chr4.1:73345957-73345976 | MS.gene059205:CDS | 45.0% | |
| CCTGAAAACGTATGAGGTCA+TGG | - | chr4.1:73345885-73345904 | MS.gene059205:CDS | 45.0% | |
| CGAAGCCACCAAACATTCTT+TGG | + | chr4.1:73346266-73346285 | None:intergenic | 45.0% | |
| CGAGTTCTCCGATGTTTACA+TGG | - | chr4.1:73346635-73346654 | MS.gene059205:CDS | 45.0% | |
| GGTAGTTCATCCAAAGATGG+AGG | - | chr4.1:73346443-73346462 | MS.gene059205:CDS | 45.0% | |
| TCTGACCTAGCATGTCCAAA+GGG | + | chr4.1:73346377-73346396 | None:intergenic | 45.0% | |
| TCTTGAGGAGAAACACACAC+TGG | + | chr4.1:73345826-73345845 | None:intergenic | 45.0% | |
| TGGTTCGTAGCTTCTTCCAT+TGG | + | chr4.1:73345607-73345626 | None:intergenic | 45.0% | |
| TTCTGACCTAGCATGTCCAA+AGG | + | chr4.1:73346378-73346397 | None:intergenic | 45.0% | |
| TTTAAGGGAGATCGACCCTT+TGG | - | chr4.1:73346359-73346378 | MS.gene059205:CDS | 45.0% | |
| TTTCCACAGCTTCTGGATTC+TGG | + | chr4.1:73345627-73345646 | None:intergenic | 45.0% | |
| ! | AGAGGAGGCTAGTCAAAAGA+GGG | - | chr4.1:73345972-73345991 | MS.gene059205:CDS | 45.0% |
| ! | CAGCAGTGTGGATTTTATCG+GGG | + | chr4.1:73345732-73345751 | None:intergenic | 45.0% |
| ! | CAGCGAAATTATGTGATGGG+TGG | - | chr4.1:73346489-73346508 | MS.gene059205:CDS | 45.0% |
| ! | CCATGACCTCATACGTTTTC+AGG | + | chr4.1:73345888-73345907 | None:intergenic | 45.0% |
| ! | GCCAAATGTCAAGGTATTCC+AGG | - | chr4.1:73346599-73346618 | MS.gene059205:CDS | 45.0% |
| ! | GGGAAGTGTGATTCAGAGTA+AGG | - | chr4.1:73346743-73346762 | MS.gene059205:CDS | 45.0% |
| ! | GTAGCTTCTTCCATTGGTTG+AGG | + | chr4.1:73345601-73345620 | None:intergenic | 45.0% |
| ! | GTGGATTTTATCGGGGTCAT+AGG | + | chr4.1:73345725-73345744 | None:intergenic | 45.0% |
| ! | GTTGGATTGATGGTTATGCC+TGG | - | chr4.1:73346708-73346727 | MS.gene059205:CDS | 45.0% |
| ! | TAGAGGAGGCTAGTCAAAAG+AGG | - | chr4.1:73345971-73345990 | MS.gene059205:CDS | 45.0% |
| !! | ATGCCTGGATTTTGGATTGG+GGG | - | chr4.1:73346723-73346742 | MS.gene059205:CDS | 45.0% |
| !! | CGAAATTATGTGATGGGTGG+AGG | - | chr4.1:73346492-73346511 | MS.gene059205:CDS | 45.0% |
| !! | GAGAAACACACACTGGCTTT+GGG | + | chr4.1:73345819-73345838 | None:intergenic | 45.0% |
| !! | TGACCTCATACGTTTTCAGG+AGG | + | chr4.1:73345885-73345904 | None:intergenic | 45.0% |
| !!! | AAGATGGAGGCGTCGTTTTT+TGG | - | chr4.1:73346456-73346475 | MS.gene059205:CDS | 45.0% |
| ACATGATGAAAGCAGCTGGG+TGG | - | chr4.1:73346151-73346170 | MS.gene059205:CDS | 50.0% | |
| ACTAGGGTTTCCACAGCTTC+TGG | + | chr4.1:73345634-73345653 | None:intergenic | 50.0% | |
| ATCGACCCTTTGGACATGCT+AGG | - | chr4.1:73346369-73346388 | MS.gene059205:CDS | 50.0% | |
| CATGATGAAAGCAGCTGGGT+GGG | - | chr4.1:73346152-73346171 | MS.gene059205:CDS | 50.0% | |
| CTCACGTAATTGGGCCTCTT+TGG | + | chr4.1:73345557-73345576 | None:intergenic | 50.0% | |
| CTGCAGGAGCAAATACCTAG+TGG | - | chr4.1:73346422-73346441 | MS.gene059205:CDS | 50.0% | |
| CTTCCCCCAATCCAAAATCC+AGG | + | chr4.1:73346729-73346748 | None:intergenic | 50.0% | |
| GAAAGTCCACCCTCAACCAA+TGG | - | chr4.1:73345588-73345607 | MS.gene059205:CDS | 50.0% | |
| GAACCAGAATCCAGAAGCTG+TGG | - | chr4.1:73345621-73345640 | MS.gene059205:CDS | 50.0% | |
| GAGCCTCCTGAAAACGTATG+AGG | - | chr4.1:73345879-73345898 | MS.gene059205:CDS | 50.0% | |
| ! | CTTCTTCCATTGGTTGAGGG+TGG | + | chr4.1:73345597-73345616 | None:intergenic | 50.0% |
| !! | GGAGAAACACACACTGGCTT+TGG | + | chr4.1:73345820-73345839 | None:intergenic | 50.0% |
| ACTCGCTCCCTCCTTTAACC+TGG | + | chr4.1:73346620-73346639 | None:intergenic | 55.0% | |
| GAGTATGAGCAGCTTGCAGC+TGG | + | chr4.1:73345702-73345721 | None:intergenic | 55.0% | |
| GCAGCTAAACGCGAGTCTTG+AGG | + | chr4.1:73345841-73345860 | None:intergenic | 55.0% | |
| GCTACCCACTGCAGCCAAAG+AGG | - | chr4.1:73345540-73345559 | MS.gene059205:CDS | 60.0% | |
| TGGGCCTCTTTGGCTGCAGT+GGG | + | chr4.1:73345547-73345566 | None:intergenic | 60.0% | |
| TTGGGCCTCTTTGGCTGCAG+TGG | + | chr4.1:73345548-73345567 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 73345538 | 73346797 | 73345538 | ID=MS.gene059205 |
| chr4.1 | mRNA | 73345538 | 73346797 | 73345538 | ID=MS.gene059205.t1;Parent=MS.gene059205 |
| chr4.1 | exon | 73345538 | 73346797 | 73345538 | ID=MS.gene059205.t1.exon1;Parent=MS.gene059205.t1 |
| chr4.1 | CDS | 73345538 | 73346797 | 73345538 | ID=cds.MS.gene059205.t1;Parent=MS.gene059205.t1 |
| Gene Sequence |
| Protein sequence |
