Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27831.t1 | RHN42672.1 | 97.2 | 466 | 13 | 0 | 1 | 466 | 14 | 479 | 1.00E-248 | 869 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27831.t1 | F4KGE8 | 29.1 | 406 | 252 | 7 | 79 | 458 | 160 | 555 | 1.5e-32 | 142.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27831.t1 | G7L787 | 97.2 | 466 | 13 | 0 | 1 | 466 | 1 | 466 | 7.2e-249 | 869.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049350 | MS.gene27831 | 0.804871 | 1.75E-49 | -1.69E-46 |
| MS.gene049711 | MS.gene27831 | 0.801768 | 7.71E-49 | -1.69E-46 |
| MS.gene049807 | MS.gene27831 | 0.847843 | 8.95E-60 | -1.69E-46 |
| MS.gene051234 | MS.gene27831 | 0.811238 | 7.74E-51 | -1.69E-46 |
| MS.gene053143 | MS.gene27831 | 0.817097 | 3.94E-52 | -1.69E-46 |
| MS.gene053144 | MS.gene27831 | 0.802396 | 5.72E-49 | -1.69E-46 |
| MS.gene053171 | MS.gene27831 | 0.825964 | 3.52E-54 | -1.69E-46 |
| MS.gene054178 | MS.gene27831 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene054554 | MS.gene27831 | 0.819465 | 1.15E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene27831 | 0.819763 | 9.79E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene27831 | 0.807182 | 5.73E-50 | -1.69E-46 |
| MS.gene058492 | MS.gene27831 | 0.996975 | 5.69E-235 | -1.69E-46 |
| MS.gene058852 | MS.gene27831 | 0.800024 | 1.75E-48 | -1.69E-46 |
| MS.gene059778 | MS.gene27831 | 0.810393 | 1.18E-50 | -1.69E-46 |
| MS.gene061100 | MS.gene27831 | 0.82767 | 1.38E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38998 | MS.gene27831 | PPI |
| MS.gene45832 | MS.gene27831 | PPI |
| MS.gene060213 | MS.gene27831 | PPI |
| MS.gene27831 | MS.gene63724 | PPI |
| MS.gene48223 | MS.gene27831 | PPI |
| MS.gene059205 | MS.gene27831 | PPI |
| MS.gene007857 | MS.gene27831 | PPI |
| MS.gene026867 | MS.gene27831 | PPI |
| MS.gene59941 | MS.gene27831 | PPI |
| MS.gene27831 | MS.gene48940 | PPI |
| MS.gene27831 | MS.gene32238 | PPI |
| MS.gene032321 | MS.gene27831 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27831.t1 | MTR_8g087400 | 97.639 | 466 | 11 | 0 | 1 | 466 | 1 | 466 | 0.0 | 942 |
| MS.gene27831.t1 | MTR_2g075910 | 44.372 | 462 | 244 | 6 | 1 | 458 | 1 | 453 | 1.42e-123 | 369 |
| MS.gene27831.t1 | MTR_8g059485 | 43.656 | 465 | 228 | 9 | 1 | 459 | 1 | 437 | 2.46e-119 | 357 |
| MS.gene27831.t1 | MTR_8g059485 | 43.656 | 465 | 228 | 9 | 1 | 459 | 10 | 446 | 2.75e-119 | 357 |
| MS.gene27831.t1 | MTR_4g025420 | 38.750 | 400 | 215 | 5 | 74 | 459 | 30 | 413 | 5.99e-94 | 290 |
| MS.gene27831.t1 | MTR_0178s0030 | 33.414 | 413 | 246 | 6 | 62 | 459 | 125 | 523 | 3.34e-63 | 214 |
| MS.gene27831.t1 | MTR_3g462150 | 28.715 | 397 | 256 | 5 | 79 | 458 | 91 | 477 | 7.01e-50 | 177 |
| MS.gene27831.t1 | MTR_5g075180 | 30.316 | 475 | 280 | 12 | 4 | 465 | 10 | 446 | 3.05e-49 | 175 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27831.t1 | AT1G29300 | 54.054 | 481 | 184 | 9 | 1 | 466 | 1 | 459 | 2.30e-169 | 484 |
| MS.gene27831.t1 | AT3G14870 | 45.064 | 466 | 245 | 7 | 1 | 459 | 5 | 466 | 4.80e-132 | 390 |
| MS.gene27831.t1 | AT3G14870 | 45.064 | 466 | 245 | 7 | 1 | 459 | 1 | 462 | 5.02e-132 | 390 |
| MS.gene27831.t1 | AT3G14870 | 45.064 | 466 | 245 | 7 | 1 | 459 | 1 | 462 | 5.02e-132 | 390 |
| MS.gene27831.t1 | AT3G14870 | 45.064 | 466 | 245 | 7 | 1 | 459 | 1 | 462 | 5.02e-132 | 390 |
| MS.gene27831.t1 | AT3G14870 | 45.064 | 466 | 245 | 7 | 1 | 459 | 2 | 463 | 5.24e-132 | 390 |
| MS.gene27831.t1 | AT1G53380 | 44.017 | 468 | 238 | 5 | 1 | 460 | 1 | 452 | 3.15e-130 | 385 |
| MS.gene27831.t1 | AT1G53380 | 44.017 | 468 | 238 | 5 | 1 | 460 | 1 | 452 | 3.15e-130 | 385 |
| MS.gene27831.t1 | AT1G53380 | 44.017 | 468 | 238 | 5 | 1 | 460 | 1 | 452 | 3.15e-130 | 385 |
| MS.gene27831.t1 | AT1G53380 | 44.017 | 468 | 238 | 5 | 1 | 460 | 1 | 452 | 3.15e-130 | 385 |
| MS.gene27831.t1 | AT1G53380 | 44.017 | 468 | 238 | 5 | 1 | 460 | 1 | 452 | 3.15e-130 | 385 |
| MS.gene27831.t1 | AT2G45260 | 40.100 | 399 | 220 | 4 | 74 | 461 | 31 | 421 | 9.76e-97 | 298 |
| MS.gene27831.t1 | AT3G60680 | 34.367 | 387 | 234 | 5 | 81 | 459 | 120 | 494 | 4.10e-72 | 236 |
| MS.gene27831.t1 | AT2G30380 | 32.663 | 398 | 217 | 8 | 67 | 459 | 60 | 411 | 1.12e-55 | 191 |
| MS.gene27831.t1 | AT4G34080 | 36.364 | 275 | 164 | 3 | 74 | 337 | 7 | 281 | 1.59e-53 | 181 |
| MS.gene27831.t1 | AT4G33320 | 35.448 | 268 | 161 | 4 | 74 | 329 | 7 | 274 | 3.21e-48 | 167 |
| MS.gene27831.t1 | AT5G58960 | 29.557 | 406 | 250 | 7 | 79 | 458 | 85 | 480 | 5.69e-44 | 161 |
| MS.gene27831.t1 | AT5G58960 | 29.557 | 406 | 250 | 7 | 79 | 458 | 85 | 480 | 5.69e-44 | 161 |
| MS.gene27831.t1 | AT5G58960 | 29.557 | 406 | 250 | 7 | 79 | 458 | 160 | 555 | 1.75e-43 | 161 |
| MS.gene27831.t1 | AT2G32130 | 57.724 | 123 | 52 | 0 | 80 | 202 | 34 | 156 | 6.62e-43 | 149 |
| MS.gene27831.t1 | AT4G36100 | 43.636 | 110 | 57 | 2 | 74 | 178 | 7 | 116 | 7.08e-21 | 91.7 |
Find 58 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTGTTCATTGCTGATTT+TGG | 0.079747 | 4.1:-13338757 | None:intergenic |
| TTCTAATTCCGGCGAGTTTC+GGG | 0.120775 | 4.1:+13340028 | MS.gene27831:CDS |
| ATGGACAACTTGATGATATT+TGG | 0.163563 | 4.1:-13339748 | None:intergenic |
| ATTCTAATTCCGGCGAGTTT+CGG | 0.208130 | 4.1:+13340027 | MS.gene27831:CDS |
| TCATTTGAAACAGTGAAATT+TGG | 0.218352 | 4.1:-13339606 | None:intergenic |
| ATTTGTCAAAATAGTGATTT+TGG | 0.234573 | 4.1:-13339647 | None:intergenic |
| GATTCTATTGATTCTAATTC+CGG | 0.300156 | 4.1:+13340017 | MS.gene27831:CDS |
| CAGAGGAAGTTAGTGAATTC+TGG | 0.306974 | 4.1:+13339807 | MS.gene27831:CDS |
| TTCTCCTTGAAGCTTCTTGA+TGG | 0.321429 | 4.1:-13339232 | None:intergenic |
| CTTCTTGATGGTGATTTCAT+AGG | 0.327494 | 4.1:-13339220 | None:intergenic |
| TTCTTATTGATCTCAAAGTA+TGG | 0.329293 | 4.1:-13339422 | None:intergenic |
| GAGTCAGGTTTATCTGTCTT+TGG | 0.330222 | 4.1:+13340100 | MS.gene27831:CDS |
| CTGAGATGGCAAAGCGTGTT+TGG | 0.331303 | 4.1:+13339865 | MS.gene27831:CDS |
| TCAAGTTGTCCATGCTAAAA+TGG | 0.340049 | 4.1:+13339758 | MS.gene27831:CDS |
| GAAACTTATGATTGAAGAAA+TGG | 0.349019 | 4.1:+13339452 | MS.gene27831:CDS |
| TCAGTTTCAACTTCATGTTC+AGG | 0.353607 | 4.1:+13339993 | MS.gene27831:CDS |
| AAAATGGAGTGTTCTTTGTT+TGG | 0.368125 | 4.1:+13339774 | MS.gene27831:CDS |
| AAGAAATGGAATCAGCAAAC+TGG | 0.369176 | 4.1:+13339466 | MS.gene27831:CDS |
| GATTCAACATTGAAAGTTCA+AGG | 0.402308 | 4.1:-13339374 | None:intergenic |
| AACTTGGCAAAAGATGAGTT+TGG | 0.414833 | 4.1:-13339717 | None:intergenic |
| TTCTAACCTTGTTCTTCTGT+TGG | 0.416097 | 4.1:-13338942 | None:intergenic |
| GGTTAGAAACAAAGCAGTTA+TGG | 0.418035 | 4.1:+13338957 | MS.gene27831:CDS |
| CAGAATTCACTAACTTCCTC+TGG | 0.439916 | 4.1:-13339806 | None:intergenic |
| TGTTTGGACACTGCATTACT+TGG | 0.442751 | 4.1:+13339881 | MS.gene27831:CDS |
| AAAACAACGATGACTTGGTT+TGG | 0.448235 | 4.1:-13339535 | None:intergenic |
| ATCATATGCAGAACTTCAAA+TGG | 0.451722 | 4.1:+13339026 | MS.gene27831:CDS |
| TAGGTTCTCTGAGGTTTACA+TGG | 0.451972 | 4.1:+13339953 | MS.gene27831:CDS |
| ATCACCATCAAGAAGCTTCA+AGG | 0.452355 | 4.1:+13339228 | MS.gene27831:CDS |
| CAGTTTCAACTTCATGTTCA+GGG | 0.460825 | 4.1:+13339994 | MS.gene27831:CDS |
| TGTATTGAATCATTGTTGTA+AGG | 0.470099 | 4.1:-13339057 | None:intergenic |
| TAAGACAGTGATACAGAGTC+AGG | 0.472174 | 4.1:+13340085 | MS.gene27831:CDS |
| TCAGGTTTATCTGTCTTTGG+TGG | 0.472612 | 4.1:+13340103 | MS.gene27831:CDS |
| TTCAGGTCAAGAAGAATACT+AGG | 0.473719 | 4.1:+13339934 | MS.gene27831:CDS |
| GGTTTGGTGAAAACTGCGTT+TGG | 0.476936 | 4.1:-13339519 | None:intergenic |
| CCATCTCAGAATTGAAAAGA+AGG | 0.510329 | 4.1:+13339115 | MS.gene27831:CDS |
| AAAGCAAAACAACGATGACT+TGG | 0.515541 | 4.1:-13339540 | None:intergenic |
| AGAAATGGAATCAGCAAACT+GGG | 0.539408 | 4.1:+13339467 | MS.gene27831:CDS |
| TTTGGTGAATATTGTGAAGA+GGG | 0.541008 | 4.1:-13339629 | None:intergenic |
| CAAAATCAGCAATGAACAAG+AGG | 0.553083 | 4.1:+13338758 | MS.gene27831:CDS |
| TGGTGAAAACTGCGTTTGGA+TGG | 0.556904 | 4.1:-13339515 | None:intergenic |
| GTGGTGCCTGGTTTCAACAT+TGG | 0.564074 | 4.1:+13340062 | MS.gene27831:CDS |
| TAATTCCGGCGAGTTTCGGG+TGG | 0.572386 | 4.1:+13340031 | MS.gene27831:CDS |
| AGCAGCTGATCAAGCAGTGG+TGG | 0.584305 | 4.1:+13339080 | MS.gene27831:CDS |
| GAAAACCACCCGAAACTCGC+CGG | 0.587240 | 4.1:-13340036 | None:intergenic |
| ATTTGATGGTGATCTGTGAA+AGG | 0.594388 | 4.1:-13338901 | None:intergenic |
| AGTTTCAACTTCATGTTCAG+GGG | 0.594405 | 4.1:+13339995 | MS.gene27831:CDS |
| CAACTCACATCTCAAAGTGA+AGG | 0.600233 | 4.1:+13338867 | MS.gene27831:CDS |
| TGTTTGGAAATTTGAACCAG+AGG | 0.621071 | 4.1:+13339790 | MS.gene27831:CDS |
| ATTTGCAAAGACATTCCAGA+AGG | 0.624146 | 4.1:+13338789 | MS.gene27831:CDS |
| TTATGGAGGCTCTAATAGCA+AGG | 0.629498 | 4.1:+13338974 | MS.gene27831:CDS |
| AGGAAGTTAGTGAATTCTGG+AGG | 0.632480 | 4.1:+13339810 | MS.gene27831:CDS |
| GCTAGCATTATAGTAACTTG+AGG | 0.633614 | 4.1:-13339165 | None:intergenic |
| GTCTTACCAATGTTGAAACC+AGG | 0.633731 | 4.1:-13340068 | None:intergenic |
| TAGAAACAAAGCAGTTATGG+AGG | 0.646650 | 4.1:+13338960 | MS.gene27831:CDS |
| GGAAGTTAGTGAATTCTGGA+GGG | 0.667121 | 4.1:+13339811 | MS.gene27831:CDS |
| GAAGAATACTAGGTTCTCTG+AGG | 0.672182 | 4.1:+13339944 | MS.gene27831:CDS |
| ACAAGCAGCTGATCAAGCAG+TGG | 0.679340 | 4.1:+13339077 | MS.gene27831:CDS |
| TAAGCACCAACAGAAGAACA+AGG | 0.710444 | 4.1:+13338936 | MS.gene27831:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAAAATTGCTTCAAATAA+TGG | + | chr4.1:13338832-13338851 | MS.gene27831:CDS | 20.0% |
| !!! | ATATTTGGATTTTAGAAACT+TGG | - | chr4.1:13339736-13339755 | None:intergenic | 20.0% |
| !!! | ATTTGTCAAAATAGTGATTT+TGG | - | chr4.1:13339650-13339669 | None:intergenic | 20.0% |
| !!! | TACTATTAGTTTTCATTTGA+TGG | - | chr4.1:13338918-13338937 | None:intergenic | 20.0% |
| ! | GAAACTTATGATTGAAGAAA+TGG | + | chr4.1:13339452-13339471 | MS.gene27831:CDS | 25.0% |
| ! | TGTATTGAATCATTGTTGTA+AGG | - | chr4.1:13339060-13339079 | None:intergenic | 25.0% |
| ! | TTCTTATTGATCTCAAAGTA+TGG | - | chr4.1:13339425-13339444 | None:intergenic | 25.0% |
| !! | TCATTTGAAACAGTGAAATT+TGG | - | chr4.1:13339609-13339628 | None:intergenic | 25.0% |
| !!! | ACTATTTTGACAAATTCAAG+AGG | + | chr4.1:13339655-13339674 | MS.gene27831:CDS | 25.0% |
| !!! | GATTCTATTGATTCTAATTC+CGG | + | chr4.1:13340017-13340036 | MS.gene27831:CDS | 25.0% |
| !!! | TTGTTTTCTAAGTACTGTTT+TGG | - | chr4.1:13339696-13339715 | None:intergenic | 25.0% |
| ATCATATGCAGAACTTCAAA+TGG | + | chr4.1:13339026-13339045 | MS.gene27831:CDS | 30.0% | |
| GATTCAACATTGAAAGTTCA+AGG | - | chr4.1:13339377-13339396 | None:intergenic | 30.0% | |
| TTTGGTGAATATTGTGAAGA+GGG | - | chr4.1:13339632-13339651 | None:intergenic | 30.0% | |
| ! | AAAATGGAGTGTTCTTTGTT+TGG | + | chr4.1:13339774-13339793 | MS.gene27831:CDS | 30.0% |
| ! | AGAAGATGTTAGCATTTTTC+AGG | + | chr4.1:13339917-13339936 | MS.gene27831:CDS | 30.0% |
| ! | ATGGACAACTTGATGATATT+TGG | - | chr4.1:13339751-13339770 | None:intergenic | 30.0% |
| ! | TTCTGCATATGATGCTTTTA+TGG | - | chr4.1:13339019-13339038 | None:intergenic | 30.0% |
| ! | TTTTGGTGAATATTGTGAAG+AGG | - | chr4.1:13339633-13339652 | None:intergenic | 30.0% |
| !!! | ACTCATCAAGTTTTTTTCTG+AGG | - | chr4.1:13339287-13339306 | None:intergenic | 30.0% |
| !!! | CTCATCAAGTTTTTTTCTGA+GGG | - | chr4.1:13339286-13339305 | None:intergenic | 30.0% |
| AAAGCAAAACAACGATGACT+TGG | - | chr4.1:13339543-13339562 | None:intergenic | 35.0% | |
| AACTTGGCAAAAGATGAGTT+TGG | - | chr4.1:13339720-13339739 | None:intergenic | 35.0% | |
| AAGAAATGGAATCAGCAAAC+TGG | + | chr4.1:13339466-13339485 | MS.gene27831:CDS | 35.0% | |
| AGAAATGGAATCAGCAAACT+GGG | + | chr4.1:13339467-13339486 | MS.gene27831:CDS | 35.0% | |
| AGTTTCAACTTCATGTTCAG+GGG | + | chr4.1:13339995-13340014 | MS.gene27831:CDS | 35.0% | |
| ATTTGCAAAGACATTCCAGA+AGG | + | chr4.1:13338789-13338808 | MS.gene27831:CDS | 35.0% | |
| CAAAATCAGCAATGAACAAG+AGG | + | chr4.1:13338758-13338777 | MS.gene27831:CDS | 35.0% | |
| CAGTTTCAACTTCATGTTCA+GGG | + | chr4.1:13339994-13340013 | MS.gene27831:CDS | 35.0% | |
| CCATCTCAGAATTGAAAAGA+AGG | + | chr4.1:13339115-13339134 | MS.gene27831:CDS | 35.0% | |
| GCTAAGAAAAAAGCTGAATC+TGG | - | chr4.1:13339840-13339859 | None:intergenic | 35.0% | |
| GCTAGCATTATAGTAACTTG+AGG | - | chr4.1:13339168-13339187 | None:intergenic | 35.0% | |
| GGTTAGAAACAAAGCAGTTA+TGG | + | chr4.1:13338957-13338976 | MS.gene27831:CDS | 35.0% | |
| TAGAAACAAAGCAGTTATGG+AGG | + | chr4.1:13338960-13338979 | MS.gene27831:CDS | 35.0% | |
| TCAGTTTCAACTTCATGTTC+AGG | + | chr4.1:13339993-13340012 | MS.gene27831:CDS | 35.0% | |
| TGTTTGGAAATTTGAACCAG+AGG | + | chr4.1:13339790-13339809 | MS.gene27831:CDS | 35.0% | |
| TTCAGGTCAAGAAGAATACT+AGG | + | chr4.1:13339934-13339953 | MS.gene27831:CDS | 35.0% | |
| TTCTAACCTTGTTCTTCTGT+TGG | - | chr4.1:13338945-13338964 | None:intergenic | 35.0% | |
| ! | TCAAGTTGTCCATGCTAAAA+TGG | + | chr4.1:13339758-13339777 | MS.gene27831:CDS | 35.0% |
| !! | AAAACAACGATGACTTGGTT+TGG | - | chr4.1:13339538-13339557 | None:intergenic | 35.0% |
| !! | AAGAACACTCCATTTTAGCA+TGG | - | chr4.1:13339770-13339789 | None:intergenic | 35.0% |
| !! | ATTTGATGGTGATCTGTGAA+AGG | - | chr4.1:13338904-13338923 | None:intergenic | 35.0% |
| !! | CCTTCTTTTCAATTCTGAGA+TGG | - | chr4.1:13339118-13339137 | None:intergenic | 35.0% |
| !! | CTTCTTGATGGTGATTTCAT+AGG | - | chr4.1:13339223-13339242 | None:intergenic | 35.0% |
| !! | TTTCTTAGCTTTTGCTGAGA+TGG | + | chr4.1:13339851-13339870 | MS.gene27831:CDS | 35.0% |
| !!! | CTCTTGTTCATTGCTGATTT+TGG | - | chr4.1:13338760-13338779 | None:intergenic | 35.0% |
| !!! | TTTTGAGACTAATCACCTTC+TGG | - | chr4.1:13338807-13338826 | None:intergenic | 35.0% |
| AGGAAGTTAGTGAATTCTGG+AGG | + | chr4.1:13339810-13339829 | MS.gene27831:CDS | 40.0% | |
| ATCACCATCAAGAAGCTTCA+AGG | + | chr4.1:13339228-13339247 | MS.gene27831:CDS | 40.0% | |
| ATTCTAATTCCGGCGAGTTT+CGG | + | chr4.1:13340027-13340046 | MS.gene27831:CDS | 40.0% | |
| CAACTCACATCTCAAAGTGA+AGG | + | chr4.1:13338867-13338886 | MS.gene27831:CDS | 40.0% | |
| CAGAATTCACTAACTTCCTC+TGG | - | chr4.1:13339809-13339828 | None:intergenic | 40.0% | |
| CAGAGGAAGTTAGTGAATTC+TGG | + | chr4.1:13339807-13339826 | MS.gene27831:CDS | 40.0% | |
| GAAGAATACTAGGTTCTCTG+AGG | + | chr4.1:13339944-13339963 | MS.gene27831:CDS | 40.0% | |
| GAGTCAGGTTTATCTGTCTT+TGG | + | chr4.1:13340100-13340119 | MS.gene27831:CDS | 40.0% | |
| GGAAGTTAGTGAATTCTGGA+GGG | + | chr4.1:13339811-13339830 | MS.gene27831:CDS | 40.0% | |
| GTCTTACCAATGTTGAAACC+AGG | - | chr4.1:13340071-13340090 | None:intergenic | 40.0% | |
| TAAGACAGTGATACAGAGTC+AGG | + | chr4.1:13340085-13340104 | MS.gene27831:CDS | 40.0% | |
| TAAGCACCAACAGAAGAACA+AGG | + | chr4.1:13338936-13338955 | MS.gene27831:CDS | 40.0% | |
| TCAGGTTTATCTGTCTTTGG+TGG | + | chr4.1:13340103-13340122 | MS.gene27831:CDS | 40.0% | |
| TGTTTGGACACTGCATTACT+TGG | + | chr4.1:13339881-13339900 | MS.gene27831:CDS | 40.0% | |
| TTCTCCTTGAAGCTTCTTGA+TGG | - | chr4.1:13339235-13339254 | None:intergenic | 40.0% | |
| ! | CTAATAGCAAGGCTTTTTGC+TGG | + | chr4.1:13338985-13339004 | MS.gene27831:CDS | 40.0% |
| ! | TTATGGAGGCTCTAATAGCA+AGG | + | chr4.1:13338974-13338993 | MS.gene27831:CDS | 40.0% |
| !! | TAGGTTCTCTGAGGTTTACA+TGG | + | chr4.1:13339953-13339972 | MS.gene27831:CDS | 40.0% |
| TGGTGAAAACTGCGTTTGGA+TGG | - | chr4.1:13339518-13339537 | None:intergenic | 45.0% | |
| TTCTAATTCCGGCGAGTTTC+GGG | + | chr4.1:13340028-13340047 | MS.gene27831:CDS | 45.0% | |
| !! | GGTTTGGTGAAAACTGCGTT+TGG | - | chr4.1:13339522-13339541 | None:intergenic | 45.0% |
| ACAAGCAGCTGATCAAGCAG+TGG | + | chr4.1:13339077-13339096 | MS.gene27831:CDS | 50.0% | |
| CTGAGATGGCAAAGCGTGTT+TGG | + | chr4.1:13339865-13339884 | MS.gene27831:CDS | 50.0% | |
| GTGGTGCCTGGTTTCAACAT+TGG | + | chr4.1:13340062-13340081 | MS.gene27831:CDS | 50.0% | |
| !! | CGAGTTTCGGGTGGTTTTCA+CGG | + | chr4.1:13340040-13340059 | MS.gene27831:CDS | 50.0% |
| AGCAGCTGATCAAGCAGTGG+TGG | + | chr4.1:13339080-13339099 | MS.gene27831:CDS | 55.0% | |
| GAAAACCACCCGAAACTCGC+CGG | - | chr4.1:13340039-13340058 | None:intergenic | 55.0% | |
| TAATTCCGGCGAGTTTCGGG+TGG | + | chr4.1:13340031-13340050 | MS.gene27831:CDS | 55.0% | |
| !! | GTTTCGGGTGGTTTTCACGG+TGG | + | chr4.1:13340043-13340062 | MS.gene27831:CDS | 55.0% |
| ! | GTGGTTTTCACGGTGGTGCC+TGG | + | chr4.1:13340050-13340069 | MS.gene27831:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13338742 | 13340145 | 13338742 | ID=MS.gene27831 |
| chr4.1 | mRNA | 13338742 | 13340145 | 13338742 | ID=MS.gene27831.t1;Parent=MS.gene27831 |
| chr4.1 | exon | 13338742 | 13340145 | 13338742 | ID=MS.gene27831.t1.exon1;Parent=MS.gene27831.t1 |
| chr4.1 | CDS | 13338742 | 13340145 | 13338742 | ID=cds.MS.gene27831.t1;Parent=MS.gene27831.t1 |
| Gene Sequence |
| Protein sequence |
