Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48223.t1 | XP_013455059.1 | 99 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 5.50E-222 | 780 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48223.t1 | F4KGE8 | 34.1 | 408 | 231 | 9 | 33 | 412 | 158 | 555 | 1.6e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48223.t1 | A0A072UHE7 | 99.0 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 3.9e-222 | 780.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene48223 | 0.825001 | 5.95E-54 | -1.69E-46 |
| MS.gene049254 | MS.gene48223 | 0.827321 | 1.67E-54 | -1.69E-46 |
| MS.gene049350 | MS.gene48223 | 0.812777 | 3.57E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene48223 | 0.827152 | 1.83E-54 | -1.69E-46 |
| MS.gene049501 | MS.gene48223 | 0.820364 | 7.13E-53 | -1.69E-46 |
| MS.gene049711 | MS.gene48223 | 0.815724 | 7.98E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene48223 | 0.803404 | 3.54E-49 | -1.69E-46 |
| MS.gene050273 | MS.gene48223 | 0.808353 | 3.23E-50 | -1.69E-46 |
| MS.gene050559 | MS.gene48223 | 0.802219 | 6.22E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene48223 | 0.824691 | 7.04E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene48223 | 0.808083 | 3.69E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene48223 | 0.817556 | 3.10E-52 | -1.69E-46 |
| MS.gene051720 | MS.gene48223 | 0.825853 | 3.74E-54 | -1.69E-46 |
| MS.gene051744 | MS.gene48223 | 0.819008 | 1.45E-52 | -1.69E-46 |
| MS.gene051957 | MS.gene48223 | 0.804249 | 2.37E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene48223 | 0.830723 | 2.50E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene48223 | 0.810441 | 1.15E-50 | -1.69E-46 |
| MS.gene052582 | MS.gene48223 | 0.811307 | 7.48E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene48223 | 0.813499 | 2.48E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene48223 | 0.801292 | 9.65E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene48223 | 0.814102 | 1.83E-51 | -1.69E-46 |
| MS.gene053599 | MS.gene48223 | 0.801373 | 9.28E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene48223 | 0.831048 | 2.08E-55 | -1.69E-46 |
| MS.gene054775 | MS.gene48223 | 0.811286 | 7.55E-51 | -1.69E-46 |
| MS.gene054991 | MS.gene48223 | 0.800794 | 1.22E-48 | -1.69E-46 |
| MS.gene055464 | MS.gene48223 | 0.804978 | 1.67E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene48223 | 0.856216 | 3.74E-62 | -1.69E-46 |
| MS.gene055466 | MS.gene48223 | 0.85083 | 1.32E-60 | -1.69E-46 |
| MS.gene055468 | MS.gene48223 | 0.836951 | 6.92E-57 | -1.69E-46 |
| MS.gene055469 | MS.gene48223 | 0.808441 | 3.09E-50 | -1.69E-46 |
| MS.gene055537 | MS.gene48223 | 0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene055580 | MS.gene48223 | -0.815545 | 8.75E-52 | -1.69E-46 |
| MS.gene05604 | MS.gene48223 | 0.805959 | 1.04E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene48223 | 0.815687 | 8.13E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene48223 | 0.806368 | 8.51E-50 | -1.69E-46 |
| MS.gene056595 | MS.gene48223 | 0.840508 | 8.34E-58 | -1.69E-46 |
| MS.gene057444 | MS.gene48223 | 0.803707 | 3.07E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene48223 | 0.800721 | 1.26E-48 | -1.69E-46 |
| MS.gene058339 | MS.gene48223 | 0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene48223 | 0.824014 | 1.02E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene48223 | 0.815359 | 9.63E-52 | -1.69E-46 |
| MS.gene059625 | MS.gene48223 | 0.832137 | 1.12E-55 | -1.69E-46 |
| MS.gene060587 | MS.gene48223 | 0.801924 | 7.16E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene48223 | MS.gene27831 | PPI |
| MS.gene007857 | MS.gene48223 | PPI |
| MS.gene48223 | MS.gene058492 | PPI |
| MS.gene023604 | MS.gene48223 | PPI |
| MS.gene026867 | MS.gene48223 | PPI |
| MS.gene59941 | MS.gene48223 | PPI |
| MS.gene48223 | MS.gene32238 | PPI |
| MS.gene032321 | MS.gene48223 | PPI |
| MS.gene48223 | MS.gene63724 | PPI |
| MS.gene38998 | MS.gene48223 | PPI |
| MS.gene060213 | MS.gene48223 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48223.t1 | MTR_4g025420 | 99.045 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 0.0 | 864 |
| MS.gene48223.t1 | MTR_2g075910 | 40.351 | 399 | 220 | 5 | 25 | 412 | 62 | 453 | 1.80e-95 | 295 |
| MS.gene48223.t1 | MTR_8g087400 | 38.750 | 400 | 215 | 5 | 30 | 413 | 74 | 459 | 1.16e-94 | 292 |
| MS.gene48223.t1 | MTR_5g075180 | 41.133 | 406 | 201 | 9 | 15 | 413 | 66 | 440 | 1.44e-90 | 281 |
| MS.gene48223.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 61 | 439 | 4.62e-89 | 277 |
| MS.gene48223.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 70 | 448 | 5.78e-89 | 277 |
| MS.gene48223.t1 | MTR_0178s0030 | 38.035 | 397 | 219 | 4 | 38 | 419 | 145 | 529 | 7.86e-89 | 279 |
| MS.gene48223.t1 | MTR_3g462150 | 35.840 | 399 | 223 | 8 | 35 | 412 | 91 | 477 | 1.62e-71 | 233 |
| MS.gene48223.t1 | MTR_2g098420 | 26.557 | 305 | 178 | 12 | 130 | 407 | 295 | 580 | 1.77e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48223.t1 | AT2G45260 | 76.761 | 426 | 91 | 4 | 1 | 419 | 1 | 425 | 0.0 | 685 |
| MS.gene48223.t1 | AT4G34080 | 75.887 | 282 | 61 | 3 | 24 | 299 | 1 | 281 | 1.63e-153 | 436 |
| MS.gene48223.t1 | AT4G33320 | 72.222 | 288 | 72 | 4 | 24 | 304 | 1 | 287 | 1.53e-143 | 410 |
| MS.gene48223.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48223.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48223.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48223.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 84 | 466 | 3.12e-94 | 291 |
| MS.gene48223.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 81 | 463 | 4.09e-94 | 291 |
| MS.gene48223.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48223.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48223.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48223.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48223.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48223.t1 | AT1G29300 | 40.863 | 394 | 202 | 7 | 30 | 413 | 80 | 452 | 1.40e-88 | 276 |
| MS.gene48223.t1 | AT2G30380 | 41.270 | 378 | 177 | 7 | 39 | 413 | 76 | 411 | 2.04e-85 | 267 |
| MS.gene48223.t1 | AT3G60680 | 37.468 | 395 | 211 | 7 | 37 | 414 | 120 | 495 | 4.59e-84 | 266 |
| MS.gene48223.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.46e-68 | 225 |
| MS.gene48223.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.46e-68 | 225 |
| MS.gene48223.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 160 | 555 | 1.13e-67 | 225 |
| MS.gene48223.t1 | AT4G36100 | 84.466 | 103 | 16 | 0 | 24 | 126 | 1 | 103 | 7.03e-57 | 187 |
| MS.gene48223.t1 | AT2G32130 | 43.902 | 123 | 64 | 2 | 38 | 159 | 36 | 154 | 1.24e-23 | 96.7 |
Find 83 sgRNAs with CRISPR-Local
Find 107 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTCTCGCTTTA+AGG | 0.079973 | 4.2:-77852428 | MS.gene48223:CDS |
| GACTGTTGTTCTCACGTAAT+TGG | 0.154101 | 4.2:+77853207 | None:intergenic |
| TTTCCACAGCTTCTGGATTC+TGG | 0.187824 | 4.2:+77853147 | None:intergenic |
| TGATGGTTATGCCTGGATTT+TGG | 0.227505 | 4.2:-77852056 | MS.gene48223:CDS |
| GTCAAGGTATTTCAGGTTAA+AGG | 0.227565 | 4.2:-77852165 | MS.gene48223:CDS |
| GCCAAATGTCAAGGTATTTC+AGG | 0.238187 | 4.2:-77852172 | MS.gene48223:CDS |
| CTCACGTAATTGGGCCTCTT+TGG | 0.240249 | 4.2:+77853217 | None:intergenic |
| GGATCTCTGAATCTTTATTC+TGG | 0.244273 | 4.2:+77852841 | None:intergenic |
| TAAAACTAGCCAAGTCAATT+TGG | 0.245512 | 4.2:-77852224 | MS.gene48223:CDS |
| ACTAGGGTTTCCACAGCTTC+TGG | 0.255097 | 4.2:+77853140 | None:intergenic |
| CGAAGCCACCAAACATTCTT+TGG | 0.287110 | 4.2:+77852508 | None:intergenic |
| GAAAAGAATCTGAAGCTTAG+AGG | 0.290385 | 4.2:-77852768 | MS.gene48223:CDS |
| GGAGAAACACACACTGGCTT+TGG | 0.323341 | 4.2:+77852954 | None:intergenic |
| TCTCCCTTAAAGCGAGAAAT+TGG | 0.330443 | 4.2:+77852424 | None:intergenic |
| ACCTGAAATACCTTGACATT+TGG | 0.347577 | 4.2:+77852171 | None:intergenic |
| TCACCAATTTCTCGCTTTAA+GGG | 0.348161 | 4.2:-77852427 | MS.gene48223:CDS |
| AGATCCGGAGTTAGATCAAC+AGG | 0.369847 | 4.2:+77852705 | None:intergenic |
| TACATATGCCAAAGAATGTT+TGG | 0.376902 | 4.2:-77852516 | MS.gene48223:CDS |
| AAAGAATCAGAAGATGGAAA+TGG | 0.389518 | 4.2:-77852735 | MS.gene48223:CDS |
| ACTGTTGTTCTCACGTAATT+GGG | 0.390567 | 4.2:+77853208 | None:intergenic |
| CGTGATCAAGAATCTGATAA+TGG | 0.398978 | 4.2:-77852109 | MS.gene48223:CDS |
| CAGAGTAAAGTTTATCTCTC+TGG | 0.401952 | 4.2:-77852015 | MS.gene48223:CDS |
| AAAGCCGAAAGTTGGATTGA+TGG | 0.415632 | 4.2:-77852073 | MS.gene48223:CDS |
| TAGCTTCCTCCATTGGTTGA+GGG | 0.420489 | 4.2:+77853174 | None:intergenic |
| ATAACCATCAATCCAACTTT+CGG | 0.420810 | 4.2:+77852069 | None:intergenic |
| GAGAAACACACACTGGCTTT+GGG | 0.424352 | 4.2:+77852955 | None:intergenic |
| TGGTTCGTAGCTTCCTCCAT+TGG | 0.436890 | 4.2:+77853167 | None:intergenic |
| CGAGTTCTCCGATGTTTACA+TGG | 0.438330 | 4.2:-77852136 | MS.gene48223:CDS |
| CTGAACTTAAGCATTTCTAC+AGG | 0.438407 | 4.2:-77852986 | MS.gene48223:CDS |
| GTAGCTTCCTCCATTGGTTG+AGG | 0.440829 | 4.2:+77853173 | None:intergenic |
| AGATTCAGAGATCCATCAAC+TGG | 0.451384 | 4.2:-77852832 | MS.gene48223:CDS |
| GAGTATGAGCAGCTTGCAGC+TGG | 0.453517 | 4.2:+77853072 | None:intergenic |
| TTTAAGGGAGATCGACCCTT+TGG | 0.453751 | 4.2:-77852412 | MS.gene48223:CDS |
| TTGGGCCTCTTTGGCTGCAG+TGG | 0.458655 | 4.2:+77853226 | None:intergenic |
| CGAAATTATGTGATGGGTGG+AGG | 0.459957 | 4.2:-77852279 | MS.gene48223:CDS |
| TCTGAAGCTTAGAGGTTTGT+CGG | 0.474219 | 4.2:-77852760 | MS.gene48223:CDS |
| ACAGAAGATGTAAAGAGATC+CGG | 0.489328 | 4.2:+77852690 | None:intergenic |
| AAGAATCAGAAGATGGAAAT+GGG | 0.496111 | 4.2:-77852734 | MS.gene48223:CDS |
| AATGATGAAAAGCCGAAAGT+TGG | 0.500083 | 4.2:-77852081 | MS.gene48223:CDS |
| GTTGGATTGATGGTTATGCC+TGG | 0.505523 | 4.2:-77852063 | MS.gene48223:CDS |
| ATCAACATGATGAAAGCAGC+TGG | 0.508364 | 4.2:-77852624 | MS.gene48223:CDS |
| GTGTAAAAGCCAAATTGACT+TGG | 0.514838 | 4.2:+77852215 | None:intergenic |
| AACATTTGGTTCGATTGAGT+TGG | 0.516699 | 4.2:+77852581 | None:intergenic |
| TGGGCCTCTTTGGCTGCAGT+GGG | 0.524633 | 4.2:+77853227 | None:intergenic |
| AGTTTATCTCTCTGGTATGA+AGG | 0.530434 | 4.2:-77852007 | MS.gene48223:CDS |
| CATGATGAAAGCAGCTGGGT+GGG | 0.531337 | 4.2:-77852619 | MS.gene48223:CDS |
| CTTCCTCCATTGGTTGAGGG+TGG | 0.535264 | 4.2:+77853177 | None:intergenic |
| GCTTTCATCATGTTGATCAA+AGG | 0.541157 | 4.2:+77852630 | None:intergenic |
| TCAACTGGAAAAGCAGATAG+AGG | 0.543038 | 4.2:-77852817 | MS.gene48223:CDS |
| TAGAGGAGGCTAGTCAAAAG+AGG | 0.549461 | 4.2:-77852800 | MS.gene48223:CDS |
| TTTCCCTGTTGATCTAACTC+CGG | 0.555285 | 4.2:-77852709 | MS.gene48223:CDS |
| GAAAGTCCACCCTCAACCAA+TGG | 0.558904 | 4.2:-77853183 | MS.gene48223:CDS |
| CCTGAAAACGTATGAGGTCA+TGG | 0.558925 | 4.2:-77852886 | MS.gene48223:CDS |
| GATCAGCGAAATTATGTGAT+GGG | 0.562322 | 4.2:-77852285 | MS.gene48223:CDS |
| TCGGCTAAAGAATCAGAAGA+TGG | 0.566268 | 4.2:-77852741 | MS.gene48223:CDS |
| ATATGCCAAAGAATGTTTGG+TGG | 0.568408 | 4.2:-77852513 | MS.gene48223:CDS |
| AGTGGTAGTTCATCCAAAGA+TGG | 0.575405 | 4.2:-77852331 | MS.gene48223:CDS |
| AGATCAGCGAAATTATGTGA+TGG | 0.575546 | 4.2:-77852286 | MS.gene48223:CDS |
| GCAGCTAAACGCGAGTCTTG+AGG | 0.583544 | 4.2:+77852933 | None:intergenic |
| AAGGTATTTCAGGTTAAAGG+AGG | 0.584321 | 4.2:-77852162 | MS.gene48223:CDS |
| GCTACCCACTGCAGCCAAAG+AGG | 0.584523 | 4.2:-77853231 | MS.gene48223:CDS |
| TTCTGACCTAGCATGTCCAA+AGG | 0.588164 | 4.2:+77852396 | None:intergenic |
| CTTCCACCAATCCAAAATCC+AGG | 0.590038 | 4.2:+77852045 | None:intergenic |
| TGAACTTAAGCATTTCTACA+GGG | 0.606736 | 4.2:-77852985 | MS.gene48223:CDS |
| TCTGACCTAGCATGTCCAAA+GGG | 0.607496 | 4.2:+77852397 | None:intergenic |
| AGAGGAGGCTAGTCAAAAGA+GGG | 0.611909 | 4.2:-77852799 | MS.gene48223:CDS |
| GAGCCTCCTGAAAACGTATG+AGG | 0.612638 | 4.2:-77852892 | MS.gene48223:CDS |
| GAACCAGAATCCAGAAGCTG+TGG | 0.615412 | 4.2:-77853150 | MS.gene48223:CDS |
| CAGCGAAATTATGTGATGGG+TGG | 0.621033 | 4.2:-77852282 | MS.gene48223:CDS |
| AGTCCACCCTCAACCAATGG+AGG | 0.621491 | 4.2:-77853180 | MS.gene48223:CDS |
| CACGCTTTCCATGTAAACAT+CGG | 0.635615 | 4.2:+77852128 | None:intergenic |
| TAACTTGTTTGTCAGCAGTG+TGG | 0.637561 | 4.2:+77853030 | None:intergenic |
| ACATGATGAAAGCAGCTGGG+TGG | 0.642099 | 4.2:-77852620 | MS.gene48223:CDS |
| AGGTATTTCAGGTTAAAGGA+GGG | 0.645858 | 4.2:-77852161 | MS.gene48223:CDS |
| GGTAGTTCATCCAAAGATGG+AGG | 0.663656 | 4.2:-77852328 | MS.gene48223:CDS |
| TCTTTGGATGAACTACCACT+AGG | 0.667755 | 4.2:+77852334 | None:intergenic |
| ATCGACCCTTTGGACATGCT+AGG | 0.675961 | 4.2:-77852402 | MS.gene48223:CDS |
| CTGCAGGAGCAAATACCTAG+TGG | 0.683301 | 4.2:-77852349 | MS.gene48223:CDS |
| TCAACATGATGAAAGCAGCT+GGG | 0.695774 | 4.2:-77852623 | MS.gene48223:CDS |
| ACTGGAAAAGCAGATAGAGG+AGG | 0.696578 | 4.2:-77852814 | MS.gene48223:CDS |
| TCTTGAGGAGAAACACACAC+TGG | 0.711119 | 4.2:+77852948 | None:intergenic |
| GATATAAGCTGATTTCAGAG+AGG | 0.711231 | 4.2:+77853094 | None:intergenic |
| GATCCGGAGTTAGATCAACA+GGG | 0.758490 | 4.2:+77852706 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAAAAACTTGGTAAAA+AGG | + | chr4.2:77852989-77853008 | None:intergenic | 20.0% |
| !!! | TGTGAATATTTTAGATACTA+GGG | + | chr4.2:77852108-77852127 | None:intergenic | 20.0% |
| !!! | TTGTGAATATTTTAGATACT+AGG | + | chr4.2:77852109-77852128 | None:intergenic | 20.0% |
| !!! | AATTTGGCTTTTACACAAAT+TGG | - | chr4.2:77853021-77853040 | MS.gene48223:CDS | 25.0% |
| AAAGAATCAGAAGATGGAAA+TGG | - | chr4.2:77852494-77852513 | MS.gene48223:CDS | 30.0% | |
| AAGAATCAGAAGATGGAAAT+GGG | - | chr4.2:77852495-77852514 | MS.gene48223:CDS | 30.0% | |
| AATTTCCCAAAAATGGAATC+TGG | + | chr4.2:77852860-77852879 | None:intergenic | 30.0% | |
| ATAACCATCAATCCAACTTT+CGG | + | chr4.2:77853163-77853182 | None:intergenic | 30.0% | |
| TAAAACTAGCCAAGTCAATT+TGG | - | chr4.2:77853005-77853024 | MS.gene48223:CDS | 30.0% | |
| TACATATGCCAAAGAATGTT+TGG | - | chr4.2:77852713-77852732 | MS.gene48223:CDS | 30.0% | |
| TGAACTTAAGCATTTCTACA+GGG | - | chr4.2:77852244-77852263 | MS.gene48223:CDS | 30.0% | |
| ! | CTTTTCGCATAAACAACATT+TGG | + | chr4.2:77852665-77852684 | None:intergenic | 30.0% |
| !! | AGAATCCAGATTCCATTTTT+GGG | - | chr4.2:77852852-77852871 | MS.gene48223:CDS | 30.0% |
| !!! | TGGCTAGTTTTAGAAAAACT+TGG | + | chr4.2:77852997-77853016 | None:intergenic | 30.0% |
| AATGATGAAAAGCCGAAAGT+TGG | - | chr4.2:77853148-77853167 | MS.gene48223:CDS | 35.0% | |
| ACAGAAGATGTAAAGAGATC+CGG | + | chr4.2:77852542-77852561 | None:intergenic | 35.0% | |
| ACCTGAAATACCTTGACATT+TGG | + | chr4.2:77853061-77853080 | None:intergenic | 35.0% | |
| ACTGTTGTTCTCACGTAATT+GGG | + | chr4.2:77852024-77852043 | None:intergenic | 35.0% | |
| ACTTGGTAAAAAGGAGTTCT+TGG | + | chr4.2:77852980-77852999 | None:intergenic | 35.0% | |
| AGATCAGCGAAATTATGTGA+TGG | - | chr4.2:77852943-77852962 | MS.gene48223:CDS | 35.0% | |
| AGTTTATCTCTCTGGTATGA+AGG | - | chr4.2:77853222-77853241 | MS.gene48223:CDS | 35.0% | |
| ATATGCCAAAGAATGTTTGG+TGG | - | chr4.2:77852716-77852735 | MS.gene48223:CDS | 35.0% | |
| CAGAGTAAAGTTTATCTCTC+TGG | - | chr4.2:77853214-77853233 | MS.gene48223:CDS | 35.0% | |
| CGTGATCAAGAATCTGATAA+TGG | - | chr4.2:77853120-77853139 | MS.gene48223:CDS | 35.0% | |
| CTGAACTTAAGCATTTCTAC+AGG | - | chr4.2:77852243-77852262 | MS.gene48223:CDS | 35.0% | |
| GATCAGCGAAATTATGTGAT+GGG | - | chr4.2:77852944-77852963 | MS.gene48223:CDS | 35.0% | |
| GCTTTCATCATGTTGATCAA+AGG | + | chr4.2:77852602-77852621 | None:intergenic | 35.0% | |
| GGATCTCTGAATCTTTATTC+TGG | + | chr4.2:77852391-77852410 | None:intergenic | 35.0% | |
| GTGTAAAAGCCAAATTGACT+TGG | + | chr4.2:77853017-77853036 | None:intergenic | 35.0% | |
| TCACCAATTTCTCGCTTTAA+GGG | - | chr4.2:77852802-77852821 | MS.gene48223:CDS | 35.0% | |
| TTCACCAATTTCTCGCTTTA+AGG | - | chr4.2:77852801-77852820 | MS.gene48223:CDS | 35.0% | |
| ! | AACATTTGGTTCGATTGAGT+TGG | + | chr4.2:77852651-77852670 | None:intergenic | 35.0% |
| ! | CAGAATCCAGATTCCATTTT+TGG | - | chr4.2:77852851-77852870 | MS.gene48223:CDS | 35.0% |
| ! | GAAAAGAATCTGAAGCTTAG+AGG | - | chr4.2:77852461-77852480 | MS.gene48223:CDS | 35.0% |
| ! | GATATAAGCTGATTTCAGAG+AGG | + | chr4.2:77852138-77852157 | None:intergenic | 35.0% |
| ! | TGGATTTTATCGGGATCATA+GGG | + | chr4.2:77852182-77852201 | None:intergenic | 35.0% |
| ! | TTCTTTTGAGCCAAATGTCA+AGG | - | chr4.2:77853048-77853067 | MS.gene48223:CDS | 35.0% |
| !! | AAGGTATTTCAGGTTAAAGG+AGG | - | chr4.2:77853067-77853086 | MS.gene48223:CDS | 35.0% |
| !! | AGGTATTTCAGGTTAAAGGA+GGG | - | chr4.2:77853068-77853087 | MS.gene48223:CDS | 35.0% |
| !! | GTCAAGGTATTTCAGGTTAA+AGG | - | chr4.2:77853064-77853083 | MS.gene48223:CDS | 35.0% |
| AAAAACGATGCCTCCATCTT+TGG | + | chr4.2:77852914-77852933 | None:intergenic | 40.0% | |
| AAAGCCGAAAGTTGGATTGA+TGG | - | chr4.2:77853156-77853175 | MS.gene48223:CDS | 40.0% | |
| AGATTCAGAGATCCATCAAC+TGG | - | chr4.2:77852397-77852416 | MS.gene48223:CDS | 40.0% | |
| AGTGGTAGTTCATCCAAAGA+TGG | - | chr4.2:77852898-77852917 | MS.gene48223:CDS | 40.0% | |
| ATCAACATGATGAAAGCAGC+TGG | - | chr4.2:77852605-77852624 | MS.gene48223:CDS | 40.0% | |
| CACGCTTTCCATGTAAACAT+CGG | + | chr4.2:77853104-77853123 | None:intergenic | 40.0% | |
| CCTGCAGAATTTCCCAAAAA+TGG | + | chr4.2:77852867-77852886 | None:intergenic | 40.0% | |
| GACTGTTGTTCTCACGTAAT+TGG | + | chr4.2:77852025-77852044 | None:intergenic | 40.0% | |
| TCAACATGATGAAAGCAGCT+GGG | - | chr4.2:77852606-77852625 | MS.gene48223:CDS | 40.0% | |
| TCAACTGGAAAAGCAGATAG+AGG | - | chr4.2:77852412-77852431 | MS.gene48223:CDS | 40.0% | |
| TCGGCTAAAGAATCAGAAGA+TGG | - | chr4.2:77852488-77852507 | MS.gene48223:CDS | 40.0% | |
| TCTCCCTTAAAGCGAGAAAT+TGG | + | chr4.2:77852808-77852827 | None:intergenic | 40.0% | |
| TCTTTGGATGAACTACCACT+AGG | + | chr4.2:77852898-77852917 | None:intergenic | 40.0% | |
| TTTCCCTGTTGATCTAACTC+CGG | - | chr4.2:77852520-77852539 | MS.gene48223:CDS | 40.0% | |
| ! | GCCAAATGTCAAGGTATTTC+AGG | - | chr4.2:77853057-77853076 | MS.gene48223:CDS | 40.0% |
| ! | GTCAGCAGTGTGGATTTTAT+CGG | + | chr4.2:77852192-77852211 | None:intergenic | 40.0% |
| ! | GTGGATTTTATCGGGATCAT+AGG | + | chr4.2:77852183-77852202 | None:intergenic | 40.0% |
| ! | GTTATGCCTGGATTTTGGAT+TGG | - | chr4.2:77853178-77853197 | MS.gene48223:CDS | 40.0% |
| ! | TCAGCAGTGTGGATTTTATC+GGG | + | chr4.2:77852191-77852210 | None:intergenic | 40.0% |
| ! | TCTGAAGCTTAGAGGTTTGT+CGG | - | chr4.2:77852469-77852488 | MS.gene48223:CDS | 40.0% |
| ! | TGATGGTTATGCCTGGATTT+TGG | - | chr4.2:77853173-77853192 | MS.gene48223:CDS | 40.0% |
| !! | CCATTTTTGGGAAATTCTGC+AGG | - | chr4.2:77852864-77852883 | MS.gene48223:CDS | 40.0% |
| !! | CTATCTGCTTTTCCAGTTGA+TGG | + | chr4.2:77852412-77852431 | None:intergenic | 40.0% |
| !! | TAACTTGTTTGTCAGCAGTG+TGG | + | chr4.2:77852202-77852221 | None:intergenic | 40.0% |
| !!! | AAGATGGAGGCATCGTTTTT+TGG | - | chr4.2:77852914-77852933 | MS.gene48223:CDS | 40.0% |
| ACTGGAAAAGCAGATAGAGG+AGG | - | chr4.2:77852415-77852434 | MS.gene48223:CDS | 45.0% | |
| AGATCCGGAGTTAGATCAAC+AGG | + | chr4.2:77852527-77852546 | None:intergenic | 45.0% | |
| CCTGAAAACGTATGAGGTCA+TGG | - | chr4.2:77852343-77852362 | MS.gene48223:CDS | 45.0% | |
| CGAAGCCACCAAACATTCTT+TGG | + | chr4.2:77852724-77852743 | None:intergenic | 45.0% | |
| CGAGTTCTCCGATGTTTACA+TGG | - | chr4.2:77853093-77853112 | MS.gene48223:CDS | 45.0% | |
| CTTCCACCAATCCAAAATCC+AGG | + | chr4.2:77853187-77853206 | None:intergenic | 45.0% | |
| GATCCGGAGTTAGATCAACA+GGG | + | chr4.2:77852526-77852545 | None:intergenic | 45.0% | |
| GGTAGTTCATCCAAAGATGG+AGG | - | chr4.2:77852901-77852920 | MS.gene48223:CDS | 45.0% | |
| TCTGACCTAGCATGTCCAAA+GGG | + | chr4.2:77852835-77852854 | None:intergenic | 45.0% | |
| TCTTGAGGAGAAACACACAC+TGG | + | chr4.2:77852284-77852303 | None:intergenic | 45.0% | |
| TTCTGACCTAGCATGTCCAA+AGG | + | chr4.2:77852836-77852855 | None:intergenic | 45.0% | |
| TTTAAGGGAGATCGACCCTT+TGG | - | chr4.2:77852817-77852836 | MS.gene48223:CDS | 45.0% | |
| TTTCCACAGCTTCTGGATTC+TGG | + | chr4.2:77852085-77852104 | None:intergenic | 45.0% | |
| ! | AGAGGAGGCTAGTCAAAAGA+GGG | - | chr4.2:77852430-77852449 | MS.gene48223:CDS | 45.0% |
| ! | CAGCGAAATTATGTGATGGG+TGG | - | chr4.2:77852947-77852966 | MS.gene48223:CDS | 45.0% |
| ! | CCATGACCTCATACGTTTTC+AGG | + | chr4.2:77852346-77852365 | None:intergenic | 45.0% |
| ! | GTTGGATTGATGGTTATGCC+TGG | - | chr4.2:77853166-77853185 | MS.gene48223:CDS | 45.0% |
| ! | TAGAGGAGGCTAGTCAAAAG+AGG | - | chr4.2:77852429-77852448 | MS.gene48223:CDS | 45.0% |
| ! | TAGCTTCCTCCATTGGTTGA+GGG | + | chr4.2:77852058-77852077 | None:intergenic | 45.0% |
| !! | ATGCCTGGATTTTGGATTGG+TGG | - | chr4.2:77853181-77853200 | MS.gene48223:CDS | 45.0% |
| !! | CGAAATTATGTGATGGGTGG+AGG | - | chr4.2:77852950-77852969 | MS.gene48223:CDS | 45.0% |
| !! | GAGAAACACACACTGGCTTT+GGG | + | chr4.2:77852277-77852296 | None:intergenic | 45.0% |
| !! | TGACCTCATACGTTTTCAGG+AGG | + | chr4.2:77852343-77852362 | None:intergenic | 45.0% |
| ACATGATGAAAGCAGCTGGG+TGG | - | chr4.2:77852609-77852628 | MS.gene48223:CDS | 50.0% | |
| ACTAGGGTTTCCACAGCTTC+TGG | + | chr4.2:77852092-77852111 | None:intergenic | 50.0% | |
| ATCGACCCTTTGGACATGCT+AGG | - | chr4.2:77852827-77852846 | MS.gene48223:CDS | 50.0% | |
| CATGATGAAAGCAGCTGGGT+GGG | - | chr4.2:77852610-77852629 | MS.gene48223:CDS | 50.0% | |
| CTCACGTAATTGGGCCTCTT+TGG | + | chr4.2:77852015-77852034 | None:intergenic | 50.0% | |
| CTGCAGGAGCAAATACCTAG+TGG | - | chr4.2:77852880-77852899 | MS.gene48223:CDS | 50.0% | |
| GAAAGTCCACCCTCAACCAA+TGG | - | chr4.2:77852046-77852065 | MS.gene48223:CDS | 50.0% | |
| GAACCAGAATCCAGAAGCTG+TGG | - | chr4.2:77852079-77852098 | MS.gene48223:CDS | 50.0% | |
| GAGCCTCCTGAAAACGTATG+AGG | - | chr4.2:77852337-77852356 | MS.gene48223:CDS | 50.0% | |
| TGGTTCGTAGCTTCCTCCAT+TGG | + | chr4.2:77852065-77852084 | None:intergenic | 50.0% | |
| ! | GTAGCTTCCTCCATTGGTTG+AGG | + | chr4.2:77852059-77852078 | None:intergenic | 50.0% |
| !! | GGAGAAACACACACTGGCTT+TGG | + | chr4.2:77852278-77852297 | None:intergenic | 50.0% |
| AGTCCACCCTCAACCAATGG+AGG | - | chr4.2:77852049-77852068 | MS.gene48223:CDS | 55.0% | |
| GAGTATGAGCAGCTTGCAGC+TGG | + | chr4.2:77852160-77852179 | None:intergenic | 55.0% | |
| GCAGCTAAACGCGAGTCTTG+AGG | + | chr4.2:77852299-77852318 | None:intergenic | 55.0% | |
| ! | CTTCCTCCATTGGTTGAGGG+TGG | + | chr4.2:77852055-77852074 | None:intergenic | 55.0% |
| GCTACCCACTGCAGCCAAAG+AGG | - | chr4.2:77851998-77852017 | MS.gene48223:CDS | 60.0% | |
| TGGGCCTCTTTGGCTGCAGT+GGG | + | chr4.2:77852005-77852024 | None:intergenic | 60.0% | |
| TTGGGCCTCTTTGGCTGCAG+TGG | + | chr4.2:77852006-77852025 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 77851996 | 77853255 | 77851996 | ID=MS.gene48223 |
| chr4.2 | mRNA | 77851996 | 77853255 | 77851996 | ID=MS.gene48223.t1;Parent=MS.gene48223 |
| chr4.2 | exon | 77851996 | 77853255 | 77851996 | ID=MS.gene48223.t1.exon1;Parent=MS.gene48223.t1 |
| chr4.2 | CDS | 77851996 | 77853255 | 77851996 | ID=cds.MS.gene48223.t1;Parent=MS.gene48223.t1 |
| Gene Sequence |
| Protein sequence |
