Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48940.t1 | XP_013455059.1 | 99 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 5.50E-222 | 780 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48940.t1 | F4KGE8 | 34.1 | 408 | 231 | 9 | 33 | 412 | 158 | 555 | 1.6e-52 | 208.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48940.t1 | A0A072UHE7 | 99.0 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 3.9e-222 | 780.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene058492 | MS.gene48940 | PPI |
| MS.gene023604 | MS.gene48940 | PPI |
| MS.gene026867 | MS.gene48940 | PPI |
| MS.gene59941 | MS.gene48940 | PPI |
| MS.gene032321 | MS.gene48940 | PPI |
| MS.gene63724 | MS.gene48940 | PPI |
| MS.gene32238 | MS.gene48940 | PPI |
| MS.gene38998 | MS.gene48940 | PPI |
| MS.gene060213 | MS.gene48940 | PPI |
| MS.gene27831 | MS.gene48940 | PPI |
| MS.gene007857 | MS.gene48940 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48940.t1 | MTR_4g025420 | 99.045 | 419 | 4 | 0 | 1 | 419 | 1 | 419 | 0.0 | 864 |
| MS.gene48940.t1 | MTR_2g075910 | 40.351 | 399 | 220 | 5 | 25 | 412 | 62 | 453 | 1.80e-95 | 295 |
| MS.gene48940.t1 | MTR_8g087400 | 38.750 | 400 | 215 | 5 | 30 | 413 | 74 | 459 | 1.16e-94 | 292 |
| MS.gene48940.t1 | MTR_5g075180 | 41.133 | 406 | 201 | 9 | 15 | 413 | 66 | 440 | 1.44e-90 | 281 |
| MS.gene48940.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 61 | 439 | 4.62e-89 | 277 |
| MS.gene48940.t1 | MTR_8g059485 | 40.874 | 389 | 213 | 8 | 34 | 415 | 70 | 448 | 5.78e-89 | 277 |
| MS.gene48940.t1 | MTR_0178s0030 | 38.035 | 397 | 219 | 4 | 38 | 419 | 145 | 529 | 7.86e-89 | 279 |
| MS.gene48940.t1 | MTR_3g462150 | 35.840 | 399 | 223 | 8 | 35 | 412 | 91 | 477 | 1.62e-71 | 233 |
| MS.gene48940.t1 | MTR_2g098420 | 26.557 | 305 | 178 | 12 | 130 | 407 | 295 | 580 | 1.77e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48940.t1 | AT2G45260 | 76.761 | 426 | 91 | 4 | 1 | 419 | 1 | 425 | 0.0 | 685 |
| MS.gene48940.t1 | AT4G34080 | 75.887 | 282 | 61 | 3 | 24 | 299 | 1 | 281 | 1.63e-153 | 436 |
| MS.gene48940.t1 | AT4G33320 | 72.222 | 288 | 72 | 4 | 24 | 304 | 1 | 287 | 1.53e-143 | 410 |
| MS.gene48940.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48940.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48940.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 80 | 462 | 3.07e-94 | 291 |
| MS.gene48940.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 84 | 466 | 3.12e-94 | 291 |
| MS.gene48940.t1 | AT3G14870 | 40.253 | 395 | 209 | 5 | 34 | 413 | 81 | 463 | 4.09e-94 | 291 |
| MS.gene48940.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48940.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48940.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48940.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48940.t1 | AT1G53380 | 39.655 | 406 | 215 | 5 | 26 | 413 | 58 | 451 | 2.15e-93 | 288 |
| MS.gene48940.t1 | AT1G29300 | 40.863 | 394 | 202 | 7 | 30 | 413 | 80 | 452 | 1.40e-88 | 276 |
| MS.gene48940.t1 | AT2G30380 | 41.270 | 378 | 177 | 7 | 39 | 413 | 76 | 411 | 2.04e-85 | 267 |
| MS.gene48940.t1 | AT3G60680 | 37.468 | 395 | 211 | 7 | 37 | 414 | 120 | 495 | 4.59e-84 | 266 |
| MS.gene48940.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.46e-68 | 225 |
| MS.gene48940.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 85 | 480 | 1.46e-68 | 225 |
| MS.gene48940.t1 | AT5G58960 | 33.990 | 406 | 230 | 9 | 35 | 412 | 160 | 555 | 1.13e-67 | 225 |
| MS.gene48940.t1 | AT4G36100 | 84.466 | 103 | 16 | 0 | 24 | 126 | 1 | 103 | 7.03e-57 | 187 |
| MS.gene48940.t1 | AT2G32130 | 43.902 | 123 | 64 | 2 | 38 | 159 | 36 | 154 | 1.24e-23 | 96.7 |
Find 83 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCACCAATTTCTCGCTTTA+AGG | 0.079973 | 4.3:-73278073 | MS.gene48940:CDS |
| GACTGTTGTTCTCACGTAAT+TGG | 0.154101 | 4.3:+73278852 | None:intergenic |
| TTTCCACAGCTTCTGGATTC+TGG | 0.187824 | 4.3:+73278792 | None:intergenic |
| TGATGGTTATGCCTGGATTT+TGG | 0.227505 | 4.3:-73277701 | MS.gene48940:CDS |
| GTCAAGGTATTTCAGGTTAA+AGG | 0.227565 | 4.3:-73277810 | MS.gene48940:CDS |
| GCCAAATGTCAAGGTATTTC+AGG | 0.238187 | 4.3:-73277817 | MS.gene48940:CDS |
| CTCACGTAATTGGGCCTCTT+TGG | 0.240249 | 4.3:+73278862 | None:intergenic |
| GGATCTCTGAATCTTTATTC+TGG | 0.244273 | 4.3:+73278486 | None:intergenic |
| TAAAACTAGCCAAGTCAATT+TGG | 0.245512 | 4.3:-73277869 | MS.gene48940:CDS |
| ACTAGGGTTTCCACAGCTTC+TGG | 0.255097 | 4.3:+73278785 | None:intergenic |
| CGAAGCCACCAAACATTCTT+TGG | 0.287110 | 4.3:+73278153 | None:intergenic |
| GAAAAGAATCTGAAGCTTAG+AGG | 0.290385 | 4.3:-73278413 | MS.gene48940:CDS |
| TCTCCCTTAAAGCGAGAAAT+TGG | 0.308545 | 4.3:+73278069 | None:intergenic |
| GGAGAAACACACACTGGCTT+TGG | 0.323341 | 4.3:+73278599 | None:intergenic |
| ACCTGAAATACCTTGACATT+TGG | 0.347577 | 4.3:+73277816 | None:intergenic |
| TCACCAATTTCTCGCTTTAA+GGG | 0.348161 | 4.3:-73278072 | MS.gene48940:CDS |
| CAGAGTAAGGTTTATCTCTC+TGG | 0.365421 | 4.3:-73277660 | MS.gene48940:CDS |
| AGATCCGGAGTTAGATCAAC+AGG | 0.369847 | 4.3:+73278350 | None:intergenic |
| TACATATGCCAAAGAATGTT+TGG | 0.376902 | 4.3:-73278161 | MS.gene48940:CDS |
| AAAGAATCAGAAGATGGAAA+TGG | 0.389518 | 4.3:-73278380 | MS.gene48940:CDS |
| ACTGTTGTTCTCACGTAATT+GGG | 0.390567 | 4.3:+73278853 | None:intergenic |
| GGGAAGTGTGATTCAGAGTA+AGG | 0.407934 | 4.3:-73277673 | MS.gene48940:CDS |
| TGTGATCAAGAATCTGATAA+TGG | 0.415047 | 4.3:-73277754 | MS.gene48940:CDS |
| AAAGCCGAAAGTTGGATTGA+TGG | 0.415632 | 4.3:-73277718 | MS.gene48940:CDS |
| TAGCTTCTTCCATTGGTTGA+GGG | 0.420489 | 4.3:+73278819 | None:intergenic |
| ATAACCATCAATCCAACTTT+CGG | 0.420810 | 4.3:+73277714 | None:intergenic |
| GAGAAACACACACTGGCTTT+GGG | 0.424352 | 4.3:+73278600 | None:intergenic |
| TTTAAGGGAGATTGACCCTT+TGG | 0.430442 | 4.3:-73278057 | MS.gene48940:CDS |
| GTAGCTTCTTCCATTGGTTG+AGG | 0.433895 | 4.3:+73278818 | None:intergenic |
| CGAGTTCTCCGATGTTTACA+TGG | 0.438330 | 4.3:-73277781 | MS.gene48940:CDS |
| CTGAACTTAAGCATTTCTAC+AGG | 0.438407 | 4.3:-73278631 | MS.gene48940:CDS |
| AGATTCAGAGATCCATCAAC+TGG | 0.451384 | 4.3:-73278477 | MS.gene48940:CDS |
| GAGTATGAGCAGCTTGCAGC+TGG | 0.453517 | 4.3:+73278717 | None:intergenic |
| TGGTTCGTAGCTTCTTCCAT+TGG | 0.454285 | 4.3:+73278812 | None:intergenic |
| TTGGGCCTCTTTGGCTGCAG+TGG | 0.458655 | 4.3:+73278871 | None:intergenic |
| CGAAATTATGTGATGGGTGG+AGG | 0.459957 | 4.3:-73277924 | MS.gene48940:CDS |
| TCTGAAGCTTAGAGGTTTGT+CGG | 0.474219 | 4.3:-73278405 | MS.gene48940:CDS |
| AAGAATCAGAAGATGGAAAT+GGG | 0.496111 | 4.3:-73278379 | MS.gene48940:CDS |
| CTTCTTCCATTGGTTGAGGG+TGG | 0.498803 | 4.3:+73278822 | None:intergenic |
| AATGATGAAAAGCCGAAAGT+TGG | 0.500083 | 4.3:-73277726 | MS.gene48940:CDS |
| GTTGGATTGATGGTTATGCC+TGG | 0.505523 | 4.3:-73277708 | MS.gene48940:CDS |
| GTGCAAAAGCCAAATTGACT+TGG | 0.506227 | 4.3:+73277860 | None:intergenic |
| ATCAACATGATGAAAGCAGC+TGG | 0.508364 | 4.3:-73278269 | MS.gene48940:CDS |
| AACATTTGGTTCGATTGAGT+TGG | 0.516699 | 4.3:+73278226 | None:intergenic |
| ACAGAAGAAGTAAAGAGATC+CGG | 0.517971 | 4.3:+73278335 | None:intergenic |
| TGGGCCTCTTTGGCTGCAGT+GGG | 0.524633 | 4.3:+73278872 | None:intergenic |
| GGTTTATCTCTCTGGTATGA+AGG | 0.530434 | 4.3:-73277652 | MS.gene48940:CDS |
| CATGATGAAAGCAGCTGGGT+GGG | 0.531337 | 4.3:-73278264 | MS.gene48940:CDS |
| GCTTTCATCATGTTGATCAA+AGG | 0.541157 | 4.3:+73278275 | None:intergenic |
| TCAACTGGAAAAGCAGATAG+AGG | 0.543038 | 4.3:-73278462 | MS.gene48940:CDS |
| TAGAGGAGGCTAGTCAAAAG+AGG | 0.549461 | 4.3:-73278445 | MS.gene48940:CDS |
| GAAAGTCCACCCTCAACCAA+TGG | 0.552084 | 4.3:-73278828 | MS.gene48940:CDS |
| TTTCCCTGTTGATCTAACTC+CGG | 0.555285 | 4.3:-73278354 | MS.gene48940:CDS |
| GGATCTCTTTACTTCTTCTG+TGG | 0.555805 | 4.3:-73278333 | MS.gene48940:CDS |
| CCTGAAAACGTATGAGGTCA+TGG | 0.558925 | 4.3:-73278531 | MS.gene48940:CDS |
| GATCAGCGAAATTATGTGAT+GGG | 0.562322 | 4.3:-73277930 | MS.gene48940:CDS |
| TCGGCTAAAGAATCAGAAGA+TGG | 0.566268 | 4.3:-73278386 | MS.gene48940:CDS |
| ATATGCCAAAGAATGTTTGG+TGG | 0.568408 | 4.3:-73278158 | MS.gene48940:CDS |
| AGTGGTAGTTCATCCAAAGA+TGG | 0.575405 | 4.3:-73277976 | MS.gene48940:CDS |
| AGATCAGCGAAATTATGTGA+TGG | 0.575546 | 4.3:-73277931 | MS.gene48940:CDS |
| GCTACCCACTGCAGCCAAAG+AGG | 0.582351 | 4.3:-73278876 | MS.gene48940:CDS |
| GCAGCTAAACGCGAGTCTTG+AGG | 0.583544 | 4.3:+73278578 | None:intergenic |
| AAGGTATTTCAGGTTAAAGG+AGG | 0.584321 | 4.3:-73277807 | MS.gene48940:CDS |
| TTCTGACCTAGCATGTCCAA+AGG | 0.588164 | 4.3:+73278041 | None:intergenic |
| TCTGACCTAGCATGTCCAAA+GGG | 0.600504 | 4.3:+73278042 | None:intergenic |
| TGAACTTAAGCATTTCTACA+GGG | 0.606736 | 4.3:-73278630 | MS.gene48940:CDS |
| AGAGGAGGCTAGTCAAAAGA+GGG | 0.611909 | 4.3:-73278444 | MS.gene48940:CDS |
| GAGCCTCCTGAAAACGTATG+AGG | 0.612638 | 4.3:-73278537 | MS.gene48940:CDS |
| GAACCAGAATCCAGAAGCTG+TGG | 0.615412 | 4.3:-73278795 | MS.gene48940:CDS |
| ATTGACCCTTTGGACATGCT+AGG | 0.618022 | 4.3:-73278047 | MS.gene48940:CDS |
| CAGCGAAATTATGTGATGGG+TGG | 0.621033 | 4.3:-73277927 | MS.gene48940:CDS |
| TAACTTGTTTGTCAGCAGTG+TGG | 0.637561 | 4.3:+73278675 | None:intergenic |
| ACATGATGAAAGCAGCTGGG+TGG | 0.642099 | 4.3:-73278265 | MS.gene48940:CDS |
| AGGTATTTCAGGTTAAAGGA+GGG | 0.645858 | 4.3:-73277806 | MS.gene48940:CDS |
| CACACTTTCCATGTAAACAT+CGG | 0.647565 | 4.3:+73277773 | None:intergenic |
| GGTAGTTCATCCAAAGATGG+AGG | 0.663656 | 4.3:-73277973 | MS.gene48940:CDS |
| TCTTTGGATGAACTACCACT+AGG | 0.667755 | 4.3:+73277979 | None:intergenic |
| CTGCAGGAGCAAATACCTAG+TGG | 0.683301 | 4.3:-73277994 | MS.gene48940:CDS |
| TCAACATGATGAAAGCAGCT+GGG | 0.695774 | 4.3:-73278268 | MS.gene48940:CDS |
| ACTGGAAAAGCAGATAGAGG+AGG | 0.696578 | 4.3:-73278459 | MS.gene48940:CDS |
| TCTTGAGGAGAAACACACAC+TGG | 0.711119 | 4.3:+73278593 | None:intergenic |
| GATATAAGCTGATTTCAGAG+AGG | 0.711231 | 4.3:+73278739 | None:intergenic |
| GATCCGGAGTTAGATCAACA+GGG | 0.758490 | 4.3:+73278351 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAGAAAAACTTGGTAAAA+AGG | + | chr4.3:73278634-73278653 | None:intergenic | 20.0% |
| !!! | TGTGAATATTTTAGATACTA+GGG | + | chr4.3:73277753-73277772 | None:intergenic | 20.0% |
| !!! | TTGTGAATATTTTAGATACT+AGG | + | chr4.3:73277754-73277773 | None:intergenic | 20.0% |
| AAAGAATCAGAAGATGGAAA+TGG | - | chr4.3:73278139-73278158 | MS.gene48940:CDS | 30.0% | |
| AAGAATCAGAAGATGGAAAT+GGG | - | chr4.3:73278140-73278159 | MS.gene48940:CDS | 30.0% | |
| AATTTCCCAAAAATGGAATC+TGG | + | chr4.3:73278505-73278524 | None:intergenic | 30.0% | |
| ATAACCATCAATCCAACTTT+CGG | + | chr4.3:73278808-73278827 | None:intergenic | 30.0% | |
| TAAAACTAGCCAAGTCAATT+TGG | - | chr4.3:73278650-73278669 | MS.gene48940:CDS | 30.0% | |
| TACATATGCCAAAGAATGTT+TGG | - | chr4.3:73278358-73278377 | MS.gene48940:CDS | 30.0% | |
| TGAACTTAAGCATTTCTACA+GGG | - | chr4.3:73277889-73277908 | MS.gene48940:CDS | 30.0% | |
| TGTGATCAAGAATCTGATAA+TGG | - | chr4.3:73278765-73278784 | MS.gene48940:CDS | 30.0% | |
| ! | CTTTTCGCATAAACAACATT+TGG | + | chr4.3:73278310-73278329 | None:intergenic | 30.0% |
| !! | AGAATCCAGATTCCATTTTT+GGG | - | chr4.3:73278497-73278516 | MS.gene48940:CDS | 30.0% |
| !!! | AATTTGGCTTTTGCACAAAT+TGG | - | chr4.3:73278666-73278685 | MS.gene48940:CDS | 30.0% |
| !!! | TGGCTAGTTTTAGAAAAACT+TGG | + | chr4.3:73278642-73278661 | None:intergenic | 30.0% |
| AATGATGAAAAGCCGAAAGT+TGG | - | chr4.3:73278793-73278812 | MS.gene48940:CDS | 35.0% | |
| ACAGAAGAAGTAAAGAGATC+CGG | + | chr4.3:73278187-73278206 | None:intergenic | 35.0% | |
| ACCTGAAATACCTTGACATT+TGG | + | chr4.3:73278706-73278725 | None:intergenic | 35.0% | |
| ACTGTTGTTCTCACGTAATT+GGG | + | chr4.3:73277669-73277688 | None:intergenic | 35.0% | |
| ACTTGGTAAAAAGGAGTTCT+TGG | + | chr4.3:73278625-73278644 | None:intergenic | 35.0% | |
| AGATCAGCGAAATTATGTGA+TGG | - | chr4.3:73278588-73278607 | MS.gene48940:CDS | 35.0% | |
| ATATGCCAAAGAATGTTTGG+TGG | - | chr4.3:73278361-73278380 | MS.gene48940:CDS | 35.0% | |
| CACACTTTCCATGTAAACAT+CGG | + | chr4.3:73278749-73278768 | None:intergenic | 35.0% | |
| CTGAACTTAAGCATTTCTAC+AGG | - | chr4.3:73277888-73277907 | MS.gene48940:CDS | 35.0% | |
| GATCAGCGAAATTATGTGAT+GGG | - | chr4.3:73278589-73278608 | MS.gene48940:CDS | 35.0% | |
| GCTTTCATCATGTTGATCAA+AGG | + | chr4.3:73278247-73278266 | None:intergenic | 35.0% | |
| GGATCTCTGAATCTTTATTC+TGG | + | chr4.3:73278036-73278055 | None:intergenic | 35.0% | |
| TCACCAATTTCTCGCTTTAA+GGG | - | chr4.3:73278447-73278466 | MS.gene48940:CDS | 35.0% | |
| TTCACCAATTTCTCGCTTTA+AGG | - | chr4.3:73278446-73278465 | MS.gene48940:CDS | 35.0% | |
| ! | AACATTTGGTTCGATTGAGT+TGG | + | chr4.3:73278296-73278315 | None:intergenic | 35.0% |
| ! | CAGAATCCAGATTCCATTTT+TGG | - | chr4.3:73278496-73278515 | MS.gene48940:CDS | 35.0% |
| ! | GAAAAGAATCTGAAGCTTAG+AGG | - | chr4.3:73278106-73278125 | MS.gene48940:CDS | 35.0% |
| ! | GATATAAGCTGATTTCAGAG+AGG | + | chr4.3:73277783-73277802 | None:intergenic | 35.0% |
| ! | TTATGCCTGGATTTTGGATT+GGG | - | chr4.3:73278824-73278843 | MS.gene48940:CDS | 35.0% |
| ! | TTCTTTTGAGCCAAATGTCA+AGG | - | chr4.3:73278693-73278712 | MS.gene48940:CDS | 35.0% |
| !! | AAGGTATTTCAGGTTAAAGG+AGG | - | chr4.3:73278712-73278731 | MS.gene48940:CDS | 35.0% |
| !! | AGGTATTTCAGGTTAAAGGA+GGG | - | chr4.3:73278713-73278732 | MS.gene48940:CDS | 35.0% |
| !! | GTCAAGGTATTTCAGGTTAA+AGG | - | chr4.3:73278709-73278728 | MS.gene48940:CDS | 35.0% |
| AAAAACGATGCCTCCATCTT+TGG | + | chr4.3:73278559-73278578 | None:intergenic | 40.0% | |
| AAAGCCGAAAGTTGGATTGA+TGG | - | chr4.3:73278801-73278820 | MS.gene48940:CDS | 40.0% | |
| AGATTCAGAGATCCATCAAC+TGG | - | chr4.3:73278042-73278061 | MS.gene48940:CDS | 40.0% | |
| AGTGGTAGTTCATCCAAAGA+TGG | - | chr4.3:73278543-73278562 | MS.gene48940:CDS | 40.0% | |
| ATCAACATGATGAAAGCAGC+TGG | - | chr4.3:73278250-73278269 | MS.gene48940:CDS | 40.0% | |
| CAGAGTAAGGTTTATCTCTC+TGG | - | chr4.3:73278859-73278878 | MS.gene48940:CDS | 40.0% | |
| CCTGCAGAATTTCCCAAAAA+TGG | + | chr4.3:73278512-73278531 | None:intergenic | 40.0% | |
| GACTGTTGTTCTCACGTAAT+TGG | + | chr4.3:73277670-73277689 | None:intergenic | 40.0% | |
| GGATCTCTTTACTTCTTCTG+TGG | - | chr4.3:73278186-73278205 | MS.gene48940:CDS | 40.0% | |
| GGTTTATCTCTCTGGTATGA+AGG | - | chr4.3:73278867-73278886 | MS.gene48940:CDS | 40.0% | |
| GTGCAAAAGCCAAATTGACT+TGG | + | chr4.3:73278662-73278681 | None:intergenic | 40.0% | |
| TCAACATGATGAAAGCAGCT+GGG | - | chr4.3:73278251-73278270 | MS.gene48940:CDS | 40.0% | |
| TCAACTGGAAAAGCAGATAG+AGG | - | chr4.3:73278057-73278076 | MS.gene48940:CDS | 40.0% | |
| TCGGCTAAAGAATCAGAAGA+TGG | - | chr4.3:73278133-73278152 | MS.gene48940:CDS | 40.0% | |
| TCTCCCTTAAAGCGAGAAAT+TGG | + | chr4.3:73278453-73278472 | None:intergenic | 40.0% | |
| TCTTTGGATGAACTACCACT+AGG | + | chr4.3:73278543-73278562 | None:intergenic | 40.0% | |
| TTTAAGGGAGATTGACCCTT+TGG | - | chr4.3:73278462-73278481 | MS.gene48940:CDS | 40.0% | |
| TTTCCCTGTTGATCTAACTC+CGG | - | chr4.3:73278165-73278184 | MS.gene48940:CDS | 40.0% | |
| ! | GCCAAATGTCAAGGTATTTC+AGG | - | chr4.3:73278702-73278721 | MS.gene48940:CDS | 40.0% |
| ! | GTCAGCAGTGTGGATTTTAT+CGG | + | chr4.3:73277837-73277856 | None:intergenic | 40.0% |
| ! | GTTATGCCTGGATTTTGGAT+TGG | - | chr4.3:73278823-73278842 | MS.gene48940:CDS | 40.0% |
| ! | TAGCTTCTTCCATTGGTTGA+GGG | + | chr4.3:73277703-73277722 | None:intergenic | 40.0% |
| ! | TATGCCTGGATTTTGGATTG+GGG | - | chr4.3:73278825-73278844 | MS.gene48940:CDS | 40.0% |
| ! | TCAGCAGTGTGGATTTTATC+GGG | + | chr4.3:73277836-73277855 | None:intergenic | 40.0% |
| ! | TCTGAAGCTTAGAGGTTTGT+CGG | - | chr4.3:73278114-73278133 | MS.gene48940:CDS | 40.0% |
| ! | TGATGGTTATGCCTGGATTT+TGG | - | chr4.3:73278818-73278837 | MS.gene48940:CDS | 40.0% |
| ! | TGGATTTTATCGGGGTCATA+GGG | + | chr4.3:73277827-73277846 | None:intergenic | 40.0% |
| !! | CCATTTTTGGGAAATTCTGC+AGG | - | chr4.3:73278509-73278528 | MS.gene48940:CDS | 40.0% |
| !! | CTATCTGCTTTTCCAGTTGA+TGG | + | chr4.3:73278057-73278076 | None:intergenic | 40.0% |
| !! | TAACTTGTTTGTCAGCAGTG+TGG | + | chr4.3:73277847-73277866 | None:intergenic | 40.0% |
| !!! | AAGATGGAGGCATCGTTTTT+TGG | - | chr4.3:73278559-73278578 | MS.gene48940:CDS | 40.0% |
| ACTGGAAAAGCAGATAGAGG+AGG | - | chr4.3:73278060-73278079 | MS.gene48940:CDS | 45.0% | |
| AGATCCGGAGTTAGATCAAC+AGG | + | chr4.3:73278172-73278191 | None:intergenic | 45.0% | |
| ATTGACCCTTTGGACATGCT+AGG | - | chr4.3:73278472-73278491 | MS.gene48940:CDS | 45.0% | |
| CCTGAAAACGTATGAGGTCA+TGG | - | chr4.3:73277988-73278007 | MS.gene48940:CDS | 45.0% | |
| CGAAGCCACCAAACATTCTT+TGG | + | chr4.3:73278369-73278388 | None:intergenic | 45.0% | |
| CGAGTTCTCCGATGTTTACA+TGG | - | chr4.3:73278738-73278757 | MS.gene48940:CDS | 45.0% | |
| GATCCGGAGTTAGATCAACA+GGG | + | chr4.3:73278171-73278190 | None:intergenic | 45.0% | |
| GGTAGTTCATCCAAAGATGG+AGG | - | chr4.3:73278546-73278565 | MS.gene48940:CDS | 45.0% | |
| TCTGACCTAGCATGTCCAAA+GGG | + | chr4.3:73278480-73278499 | None:intergenic | 45.0% | |
| TCTTGAGGAGAAACACACAC+TGG | + | chr4.3:73277929-73277948 | None:intergenic | 45.0% | |
| TGGTTCGTAGCTTCTTCCAT+TGG | + | chr4.3:73277710-73277729 | None:intergenic | 45.0% | |
| TTCTGACCTAGCATGTCCAA+AGG | + | chr4.3:73278481-73278500 | None:intergenic | 45.0% | |
| TTTCCACAGCTTCTGGATTC+TGG | + | chr4.3:73277730-73277749 | None:intergenic | 45.0% | |
| ! | AGAGGAGGCTAGTCAAAAGA+GGG | - | chr4.3:73278075-73278094 | MS.gene48940:CDS | 45.0% |
| ! | CAGCAGTGTGGATTTTATCG+GGG | + | chr4.3:73277835-73277854 | None:intergenic | 45.0% |
| ! | CAGCGAAATTATGTGATGGG+TGG | - | chr4.3:73278592-73278611 | MS.gene48940:CDS | 45.0% |
| ! | CCATGACCTCATACGTTTTC+AGG | + | chr4.3:73277991-73278010 | None:intergenic | 45.0% |
| ! | GGGAAGTGTGATTCAGAGTA+AGG | - | chr4.3:73278846-73278865 | MS.gene48940:CDS | 45.0% |
| ! | GTAGCTTCTTCCATTGGTTG+AGG | + | chr4.3:73277704-73277723 | None:intergenic | 45.0% |
| ! | GTGGATTTTATCGGGGTCAT+AGG | + | chr4.3:73277828-73277847 | None:intergenic | 45.0% |
| ! | GTTGGATTGATGGTTATGCC+TGG | - | chr4.3:73278811-73278830 | MS.gene48940:CDS | 45.0% |
| ! | TAGAGGAGGCTAGTCAAAAG+AGG | - | chr4.3:73278074-73278093 | MS.gene48940:CDS | 45.0% |
| !! | ATGCCTGGATTTTGGATTGG+GGG | - | chr4.3:73278826-73278845 | MS.gene48940:CDS | 45.0% |
| !! | CGAAATTATGTGATGGGTGG+AGG | - | chr4.3:73278595-73278614 | MS.gene48940:CDS | 45.0% |
| !! | GAGAAACACACACTGGCTTT+GGG | + | chr4.3:73277922-73277941 | None:intergenic | 45.0% |
| !! | TGACCTCATACGTTTTCAGG+AGG | + | chr4.3:73277988-73278007 | None:intergenic | 45.0% |
| ACATGATGAAAGCAGCTGGG+TGG | - | chr4.3:73278254-73278273 | MS.gene48940:CDS | 50.0% | |
| ACTAGGGTTTCCACAGCTTC+TGG | + | chr4.3:73277737-73277756 | None:intergenic | 50.0% | |
| CATGATGAAAGCAGCTGGGT+GGG | - | chr4.3:73278255-73278274 | MS.gene48940:CDS | 50.0% | |
| CTCACGTAATTGGGCCTCTT+TGG | + | chr4.3:73277660-73277679 | None:intergenic | 50.0% | |
| CTGCAGGAGCAAATACCTAG+TGG | - | chr4.3:73278525-73278544 | MS.gene48940:CDS | 50.0% | |
| CTTCCCCCAATCCAAAATCC+AGG | + | chr4.3:73278832-73278851 | None:intergenic | 50.0% | |
| GAAAGTCCACCCTCAACCAA+TGG | - | chr4.3:73277691-73277710 | MS.gene48940:CDS | 50.0% | |
| GAACCAGAATCCAGAAGCTG+TGG | - | chr4.3:73277724-73277743 | MS.gene48940:CDS | 50.0% | |
| GAGCCTCCTGAAAACGTATG+AGG | - | chr4.3:73277982-73278001 | MS.gene48940:CDS | 50.0% | |
| ! | CTTCTTCCATTGGTTGAGGG+TGG | + | chr4.3:73277700-73277719 | None:intergenic | 50.0% |
| !! | GGAGAAACACACACTGGCTT+TGG | + | chr4.3:73277923-73277942 | None:intergenic | 50.0% |
| GAGTATGAGCAGCTTGCAGC+TGG | + | chr4.3:73277805-73277824 | None:intergenic | 55.0% | |
| GCAGCTAAACGCGAGTCTTG+AGG | + | chr4.3:73277944-73277963 | None:intergenic | 55.0% | |
| GCTACCCACTGCAGCCAAAG+AGG | - | chr4.3:73277643-73277662 | MS.gene48940:CDS | 60.0% | |
| TGGGCCTCTTTGGCTGCAGT+GGG | + | chr4.3:73277650-73277669 | None:intergenic | 60.0% | |
| TTGGGCCTCTTTGGCTGCAG+TGG | + | chr4.3:73277651-73277670 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 73277641 | 73278900 | 73277641 | ID=MS.gene48940 |
| chr4.3 | mRNA | 73277641 | 73278900 | 73277641 | ID=MS.gene48940.t1;Parent=MS.gene48940 |
| chr4.3 | exon | 73277641 | 73278900 | 73277641 | ID=MS.gene48940.t1.exon1;Parent=MS.gene48940.t1 |
| chr4.3 | CDS | 73277641 | 73278900 | 73277641 | ID=cds.MS.gene48940.t1;Parent=MS.gene48940.t1 |
| Gene Sequence |
| Protein sequence |
