Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007950.t1 | XP_003601071.1 | 97.9 | 439 | 8 | 1 | 1 | 438 | 1 | 439 | 1.90E-244 | 854.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007950.t1 | Q680U9 | 75.3 | 438 | 108 | 0 | 1 | 438 | 1 | 438 | 9.9e-197 | 687.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007950.t1 | G7J329 | 97.9 | 439 | 8 | 1 | 1 | 438 | 1 | 439 | 1.4e-244 | 854.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene007950 | MS.gene044565 | PPI |
| MS.gene007950 | MS.gene038754 | PPI |
| MS.gene007950 | MS.gene80729 | PPI |
| MS.gene007950 | MS.gene76435 | PPI |
| MS.gene007950 | MS.gene89597 | PPI |
| MS.gene007950 | MS.gene012032 | PPI |
| MS.gene032967 | MS.gene007950 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007950.t1 | MTR_3g072660 | 97.506 | 441 | 10 | 1 | 1 | 440 | 1 | 441 | 0.0 | 888 |
| MS.gene007950.t1 | MTR_4g088935 | 96.136 | 440 | 17 | 0 | 1 | 440 | 1 | 440 | 0.0 | 877 |
| MS.gene007950.t1 | MTR_3g072660 | 95.918 | 441 | 10 | 2 | 1 | 440 | 1 | 434 | 0.0 | 866 |
| MS.gene007950.t1 | MTR_3g072660 | 97.656 | 384 | 8 | 1 | 1 | 383 | 1 | 384 | 0.0 | 773 |
| MS.gene007950.t1 | MTR_3g072660 | 95.833 | 384 | 8 | 2 | 1 | 383 | 1 | 377 | 0.0 | 751 |
| MS.gene007950.t1 | MTR_3g072660 | 97.479 | 357 | 8 | 1 | 1 | 356 | 1 | 357 | 0.0 | 716 |
| MS.gene007950.t1 | MTR_3g072660 | 99.045 | 314 | 3 | 0 | 125 | 438 | 1 | 314 | 0.0 | 646 |
| MS.gene007950.t1 | MTR_3g072660 | 96.815 | 314 | 3 | 1 | 125 | 438 | 1 | 307 | 0.0 | 624 |
| MS.gene007950.t1 | MTR_3g072660 | 97.306 | 297 | 7 | 1 | 1 | 296 | 1 | 297 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene007950.t1 | AT4G17020 | 75.342 | 438 | 108 | 0 | 1 | 438 | 1 | 438 | 0.0 | 711 |
| MS.gene007950.t1 | AT4G17020 | 75.342 | 438 | 108 | 0 | 1 | 438 | 1 | 438 | 0.0 | 711 |
| MS.gene007950.t1 | AT4G17020 | 75.342 | 438 | 108 | 0 | 1 | 438 | 1 | 438 | 0.0 | 709 |
Find 95 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGAAGAGCTTATGTTTA+AGG | 0.129241 | 3.4:-71540596 | None:intergenic |
| AAGCCACTCTCAGTTAATTT+TGG | 0.189946 | 3.4:-71540783 | None:intergenic |
| GAGAATGGAGTGGTTTATTA+TGG | 0.194734 | 3.4:+71544029 | MS.gene007950:CDS |
| ACCTGTGCCGGCTAACTTAT+TGG | 0.233617 | 3.4:+71539195 | MS.gene007950:CDS |
| CAAAGTTGCCATTGATAGAT+TGG | 0.301692 | 3.4:+71539252 | MS.gene007950:CDS |
| ATTTCAGAGGAACATAATTA+AGG | 0.312303 | 3.4:+71541283 | MS.gene007950:CDS |
| GATCATTGCCAAGAATTTCA+TGG | 0.333040 | 3.4:+71538638 | MS.gene007950:CDS |
| CACCATGTCCATGAAATTCT+TGG | 0.335342 | 3.4:-71538646 | None:intergenic |
| CAACTTCCAAATCTTATTGT+TGG | 0.350456 | 3.4:+71543198 | MS.gene007950:CDS |
| AATTATGTTCCTCTGAAATT+CGG | 0.351671 | 3.4:-71541279 | None:intergenic |
| TTTGCAAATTCAGTGTGAAA+TGG | 0.353856 | 3.4:+71544371 | MS.gene007950:intron |
| AGATTCAAAGAAGATGCTTT+TGG | 0.356097 | 3.4:+71544054 | MS.gene007950:CDS |
| ATAGCTCCAACAATAAGATT+TGG | 0.356315 | 3.4:-71543204 | None:intergenic |
| CACAACTTTGGTACATCATC+AGG | 0.365045 | 3.4:+71540915 | MS.gene007950:CDS |
| GTAGAGTTTATCAAGTTTGA+TGG | 0.368766 | 3.4:-71538682 | None:intergenic |
| TTGCAAATTCAGTGTGAAAT+GGG | 0.371897 | 3.4:+71544372 | MS.gene007950:intron |
| TGTGAGGCTCCCAACCTTAG+AGG | 0.379390 | 3.4:+71540315 | MS.gene007950:CDS |
| GGCTAACTTATTGGAGGAAT+GGG | 0.388091 | 3.4:+71539204 | MS.gene007950:CDS |
| TTACAGTTATTGCATATTGA+TGG | 0.396001 | 3.4:+71539172 | MS.gene007950:CDS |
| TGGGCTGGTCAAACTTCAAC+AGG | 0.402831 | 3.4:+71541319 | MS.gene007950:CDS |
| ATAAGTCTCAAGATCCTCTA+AGG | 0.406525 | 3.4:-71540329 | None:intergenic |
| AGAATGGAGTGGTTTATTAT+GGG | 0.410978 | 3.4:+71544030 | MS.gene007950:CDS |
| AGGTTTATAAATGCGTTGAT+TGG | 0.418217 | 3.4:+71544447 | MS.gene007950:CDS |
| ACCCATGTACTAAAAGATTC+TGG | 0.421490 | 3.4:-71539919 | None:intergenic |
| TTGTGCTTTGATAGACCATC+TGG | 0.426688 | 3.4:-71539232 | None:intergenic |
| AAATCAAAATGCCTGAGGTT+AGG | 0.443637 | 3.4:+71538616 | None:intergenic |
| GCCTGAAAATGTCACAGATC+AGG | 0.448319 | 3.4:+71543742 | MS.gene007950:CDS |
| CCTGTGACTGCGCCAGAGAA+TGG | 0.448807 | 3.4:+71544014 | MS.gene007950:CDS |
| TTAAGGACCTTGCAGACCTT+GGG | 0.454174 | 3.4:+71541300 | MS.gene007950:CDS |
| CTTGATAAACTCTACGAGAA+TGG | 0.454631 | 3.4:+71538690 | MS.gene007950:CDS |
| ATTAAGGACCTTGCAGACCT+TGG | 0.455377 | 3.4:+71541299 | MS.gene007950:CDS |
| CGGCTAACTTATTGGAGGAA+TGG | 0.464320 | 3.4:+71539203 | MS.gene007950:CDS |
| TCCAATAAGTTAGCCGGCAC+AGG | 0.472055 | 3.4:-71539196 | None:intergenic |
| TGCAGATAGTCAGTTTCCTT+CGG | 0.477880 | 3.4:+71543678 | MS.gene007950:intron |
| AGCCTCACAGTAATATTAGA+AGG | 0.477881 | 3.4:-71540301 | None:intergenic |
| TCAAAGTTGCTTACCCTGGA+TGG | 0.478380 | 3.4:-71543905 | None:intergenic |
| AAGGTCTTGTCAACATGACT+TGG | 0.480094 | 3.4:-71540577 | None:intergenic |
| TATAGGGCAGGAAAGAAAGT+TGG | 0.482264 | 3.4:+71541473 | MS.gene007950:intron |
| GTCTCAAGATCCTCTAAGGT+TGG | 0.483810 | 3.4:-71540325 | None:intergenic |
| TAATAAACCACTCCATTCTC+TGG | 0.489013 | 3.4:-71544026 | None:intergenic |
| TGGATACAAATGCACAACTT+TGG | 0.500692 | 3.4:+71540903 | MS.gene007950:CDS |
| TCTCAAGATCCTCTAAGGTT+GGG | 0.504105 | 3.4:-71540324 | None:intergenic |
| TGAATCATCATCAAGAAAAG+AGG | 0.506736 | 3.4:+71541540 | MS.gene007950:CDS |
| AGTTTATCAAGTTTGATGGC+AGG | 0.511969 | 3.4:-71538678 | None:intergenic |
| CAATTGAACCAATCTATCAA+TGG | 0.514654 | 3.4:-71539260 | None:intergenic |
| GTGGTGTCAGATTAGGTTGT+GGG | 0.514797 | 3.4:+71543829 | MS.gene007950:intron |
| GACTTATGCTGTGGAACAAT+GGG | 0.515674 | 3.4:+71540345 | MS.gene007950:CDS |
| GTAAACAGAACCTCTGACTC+AGG | 0.517111 | 3.4:-71540642 | None:intergenic |
| TCATCTGCGAAGCTATTCTC+AGG | 0.522090 | 3.4:+71538715 | MS.gene007950:CDS |
| TGCCAAGAATTTCATGGACA+TGG | 0.531687 | 3.4:+71538644 | MS.gene007950:CDS |
| GGACCTTGCAGACCTTGGGC+TGG | 0.536902 | 3.4:+71541304 | MS.gene007950:CDS |
| ACATATTTCTTTGCAAGAGG+TGG | 0.536971 | 3.4:-71539148 | None:intergenic |
| CAGGAGAGAGGTGTTGATGC+TGG | 0.539060 | 3.4:+71541036 | MS.gene007950:intron |
| GTGTGGCAGGATGTATTTGA+AGG | 0.539271 | 3.4:+71543989 | MS.gene007950:intron |
| TCTGACTCAGGAGACGCCGC+TGG | 0.540398 | 3.4:-71540630 | None:intergenic |
| AGGTCTTGTCAACATGACTT+GGG | 0.547217 | 3.4:-71540576 | None:intergenic |
| CATTCCTCCAATAAGTTAGC+CGG | 0.547340 | 3.4:-71539202 | None:intergenic |
| CAATGGCATTACAGCAGACC+AGG | 0.547595 | 3.4:+71543257 | MS.gene007950:CDS |
| CCATTCTCTGGCGCAGTCAC+AGG | 0.549704 | 3.4:-71544014 | None:intergenic |
| AACACATATTTCTTTGCAAG+AGG | 0.550355 | 3.4:-71539151 | None:intergenic |
| ATTATGACGAGTTCCCATCC+AGG | 0.551997 | 3.4:+71543891 | MS.gene007950:CDS |
| TGCAAATTCAGTGTGAAATG+GGG | 0.558525 | 3.4:+71544373 | MS.gene007950:intron |
| AGACTTATGCTGTGGAACAA+TGG | 0.563224 | 3.4:+71540344 | MS.gene007950:CDS |
| GGTGGTGTCAGATTAGGTTG+TGG | 0.567360 | 3.4:+71543828 | MS.gene007950:intron |
| AATTACACTGTGAGATATTG+CGG | 0.567848 | 3.4:+71542858 | MS.gene007950:CDS |
| CAAAGTTGCTTACCCTGGAT+GGG | 0.570298 | 3.4:-71543904 | None:intergenic |
| GCAAATTCAGTGTGAAATGG+GGG | 0.572516 | 3.4:+71544374 | MS.gene007950:intron |
| ATTCAGTCATGCTCACTGAA+AGG | 0.573028 | 3.4:-71541522 | None:intergenic |
| TTAGAAGGCATTGATTCCCT+CGG | 0.574898 | 3.4:-71540286 | None:intergenic |
| TCATCCTCGTGTTGCACAGA+GGG | 0.581937 | 3.4:+71543709 | MS.gene007950:CDS |
| GCTCCAAAATTAACTGAGAG+TGG | 0.582979 | 3.4:+71540780 | MS.gene007950:CDS |
| TGACTTGATATCATTCATGC+TGG | 0.584712 | 3.4:+71541059 | MS.gene007950:CDS |
| TTGGCAATGATCCTAACCTC+AGG | 0.587350 | 3.4:-71538627 | None:intergenic |
| GCATATTGATGGACCTGTGC+CGG | 0.588398 | 3.4:+71539183 | MS.gene007950:CDS |
| AGCGGCGTCTCCTGAGTCAG+AGG | 0.589108 | 3.4:+71540632 | MS.gene007950:CDS |
| GAGGAATGGGTGCTTCCAGA+TGG | 0.595776 | 3.4:+71539217 | MS.gene007950:CDS |
| GAGGATGAGCATTCTGCCGA+AGG | 0.597208 | 3.4:-71543694 | None:intergenic |
| TGTGCCGGCTAACTTATTGG+AGG | 0.597403 | 3.4:+71539198 | MS.gene007950:CDS |
| GTTGAAGTTTGACCAGCCCA+AGG | 0.597505 | 3.4:-71541316 | None:intergenic |
| CAAGAATTTCATGGACATGG+TGG | 0.599325 | 3.4:+71538647 | MS.gene007950:CDS |
| TTATGACGAGTTCCCATCCA+GGG | 0.606538 | 3.4:+71543892 | MS.gene007950:CDS |
| TGACCAGCCCAAGGTCTGCA+AGG | 0.612502 | 3.4:-71541307 | None:intergenic |
| ACACATTGACCGAATTTCAG+AGG | 0.620159 | 3.4:+71541270 | MS.gene007950:CDS |
| CAAATTCAGTGTGAAATGGG+GGG | 0.631255 | 3.4:+71544375 | MS.gene007950:intron |
| GGAATATATCACTAATTCTG+AGG | 0.632294 | 3.4:+71540937 | MS.gene007950:CDS |
| GGATCTTGAGACTTATGCTG+TGG | 0.646865 | 3.4:+71540336 | MS.gene007950:CDS |
| TGGCAGTGGAACTTTGCCGA+GGG | 0.654665 | 3.4:+71540270 | MS.gene007950:intron |
| ATGGCAGTGGAACTTTGCCG+AGG | 0.657791 | 3.4:+71540269 | MS.gene007950:intron |
| AAACAAAATCAAAATGCCTG+AGG | 0.666803 | 3.4:+71538611 | None:intergenic |
| ACAACTTTGGTACATCATCA+GGG | 0.674313 | 3.4:+71540916 | MS.gene007950:CDS |
| CTCATCCTCGTGTTGCACAG+AGG | 0.680297 | 3.4:+71543708 | MS.gene007950:CDS |
| GGTACCCTCTGTGCAACACG+AGG | 0.694512 | 3.4:-71543713 | None:intergenic |
| TGCCTTCTAATATTACTGTG+AGG | 0.698083 | 3.4:+71540299 | MS.gene007950:CDS |
| TTATGCTGTGGAACAATGGG+AGG | 0.705086 | 3.4:+71540348 | MS.gene007950:CDS |
| GACTGCGCCAGAGAATGGAG+TGG | 0.741961 | 3.4:+71544019 | MS.gene007950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAAATATAAATGTAG+CGG | + | chr3.4:71542084-71542103 | MS.gene007950:intron | 10.0% |
| !! | GAATAATATACATAATAAAA+AGG | - | chr3.4:71539732-71539751 | None:intergenic | 10.0% |
| !!! | ATTAAAAGATTATAATTTTG+TGG | + | chr3.4:71544315-71544334 | MS.gene007950:intron | 10.0% |
| !!! | TAATTTTACTTTTTAAATTG+TGG | + | chr3.4:71543303-71543322 | MS.gene007950:intron | 10.0% |
| !!! | TTTTTTTTTACAACTTTATA+GGG | + | chr3.4:71541457-71541476 | MS.gene007950:intron | 10.0% |
| !!! | TTTTTTTTTTACAACTTTAT+AGG | + | chr3.4:71541456-71541475 | MS.gene007950:intron | 10.0% |
| !! | AAATTTAATTAAAAGGAAAG+AGG | - | chr3.4:71542290-71542309 | None:intergenic | 15.0% |
| !! | ATTAAGACAAATTATTAAAG+TGG | - | chr3.4:71540457-71540476 | None:intergenic | 15.0% |
| !! | ATTTCTGATATTTAGTATTA+TGG | + | chr3.4:71543807-71543826 | MS.gene007950:intron | 15.0% |
| !! | TAACTACTTATAAGTTATAA+AGG | - | chr3.4:71543415-71543434 | None:intergenic | 15.0% |
| !! | TAAGTTTAATAGAAAGTTTA+GGG | + | chr3.4:71541593-71541612 | MS.gene007950:intron | 15.0% |
| !! | TTAAGTTAAAAACATCATTA+AGG | + | chr3.4:71543545-71543564 | MS.gene007950:intron | 15.0% |
| !! | TTAAGTTTAATAGAAAGTTT+AGG | + | chr3.4:71541592-71541611 | MS.gene007950:intron | 15.0% |
| !!! | AATTTTGTTCATATGTATAT+AGG | + | chr3.4:71542365-71542384 | MS.gene007950:intron | 15.0% |
| !!! | ACATACAATAATATTTTTGA+GGG | - | chr3.4:71543162-71543181 | None:intergenic | 15.0% |
| !!! | CATTCTATTTAATTTTTTCA+GGG | + | chr3.4:71542785-71542804 | MS.gene007950:intron | 15.0% |
| !!! | TACATACAATAATATTTTTG+AGG | - | chr3.4:71543163-71543182 | None:intergenic | 15.0% |
| !!! | TCATTCTATTTAATTTTTTC+AGG | + | chr3.4:71542784-71542803 | MS.gene007950:intron | 15.0% |
| !! | AAAACAAATCAATTGTGAAA+CGG | - | chr3.4:71541574-71541593 | None:intergenic | 20.0% |
| !! | AAACATGAAAAAAATGATAG+TGG | - | chr3.4:71544228-71544247 | None:intergenic | 20.0% |
| !! | AAATATTATTGTATGTATGC+AGG | + | chr3.4:71543166-71543185 | MS.gene007950:intron | 20.0% |
| !! | AAGCAAAGAAAAAAAAGAAT+GGG | - | chr3.4:71541811-71541830 | None:intergenic | 20.0% |
| !! | AATATTATTGTATGTATGCA+GGG | + | chr3.4:71543167-71543186 | MS.gene007950:intron | 20.0% |
| !! | ATATTATATGCCTAATCATT+GGG | - | chr3.4:71541248-71541267 | None:intergenic | 20.0% |
| !! | ATTAAATTGCAGTTACAAAA+GGG | - | chr3.4:71541201-71541220 | None:intergenic | 20.0% |
| !! | ATTATGTCTTCAAAATGAAA+GGG | + | chr3.4:71542310-71542329 | MS.gene007950:intron | 20.0% |
| !! | CATAAAATTGTTAATATGAG+TGG | + | chr3.4:71540021-71540040 | MS.gene007950:intron | 20.0% |
| !! | CATACAAATCATAAAATGTT+AGG | + | chr3.4:71539119-71539138 | MS.gene007950:intron | 20.0% |
| !! | GTGAAAAAAAATACTAAACT+GGG | - | chr3.4:71539841-71539860 | None:intergenic | 20.0% |
| !! | TATAAGTACAAGATAAATTG+AGG | - | chr3.4:71543049-71543068 | None:intergenic | 20.0% |
| !! | TATAATTTCTAATACTTACC+TGG | - | chr3.4:71543278-71543297 | None:intergenic | 20.0% |
| !! | TATATTATATGCCTAATCAT+TGG | - | chr3.4:71541249-71541268 | None:intergenic | 20.0% |
| !! | TATTATGTCTTCAAAATGAA+AGG | + | chr3.4:71542309-71542328 | MS.gene007950:intron | 20.0% |
| !! | TTATAGCTGAATTAATAGTT+TGG | - | chr3.4:71543074-71543093 | None:intergenic | 20.0% |
| !! | TTCACCAAAATATTATTGTT+TGG | + | chr3.4:71543111-71543130 | MS.gene007950:intron | 20.0% |
| !! | TTTGAGAGAAATCATAAAAT+GGG | + | chr3.4:71539043-71539062 | MS.gene007950:intron | 20.0% |
| !!! | AACACCAAACAATAATATTT+TGG | - | chr3.4:71543118-71543137 | None:intergenic | 20.0% |
| !!! | ATGTATTCTAAAAGAAACAA+AGG | - | chr3.4:71539595-71539614 | None:intergenic | 20.0% |
| !!! | ATTTTGTTCCTTTTAGAAAA+AGG | + | chr3.4:71544253-71544272 | MS.gene007950:intron | 20.0% |
| !!! | ATTTTGTTTCAAATGACAAT+TGG | + | chr3.4:71539408-71539427 | MS.gene007950:intron | 20.0% |
| !!! | CAATAAAACCTTTTTCTAAA+AGG | - | chr3.4:71544264-71544283 | None:intergenic | 20.0% |
| !!! | TAATCTTTTTTGTTAGTAGA+TGG | + | chr3.4:71541919-71541938 | MS.gene007950:intron | 20.0% |
| !!! | TGTATTCTAAAAGAAACAAA+GGG | - | chr3.4:71539594-71539613 | None:intergenic | 20.0% |
| !!! | TTCATATGAATTTTGAATTC+CGG | - | chr3.4:71540154-71540173 | None:intergenic | 20.0% |
| ! | AAAAAGTTCCAAAACAAGAT+TGG | - | chr3.4:71541966-71541985 | None:intergenic | 25.0% |
| ! | AAAAGGAAAGAGGAAATATA+AGG | - | chr3.4:71542280-71542299 | None:intergenic | 25.0% |
| ! | AAAAGTGGAATCAAAAGAAA+AGG | - | chr3.4:71540381-71540400 | None:intergenic | 25.0% |
| ! | AAACTCAAATAAGTACTTGT+GGG | + | chr3.4:71539017-71539036 | MS.gene007950:intron | 25.0% |
| ! | AAAGAGATTTAGCAAAAATC+AGG | - | chr3.4:71539564-71539583 | None:intergenic | 25.0% |
| ! | ACATCATTAAAAATGTGTGA+AGG | + | chr3.4:71541845-71541864 | MS.gene007950:intron | 25.0% |
| ! | ACTTAAAGCAAATTCAAGAA+CGG | - | chr3.4:71539666-71539685 | None:intergenic | 25.0% |
| ! | ATTTCAGAGGAACATAATTA+AGG | + | chr3.4:71541283-71541302 | MS.gene007950:CDS | 25.0% |
| ! | ATTTGTATGCATTAAAACCA+CGG | - | chr3.4:71539108-71539127 | None:intergenic | 25.0% |
| ! | CATTAAATTGCAGTTACAAA+AGG | - | chr3.4:71541202-71541221 | None:intergenic | 25.0% |
| ! | GAAGCAAAGAAAAAAAAGAA+TGG | - | chr3.4:71541812-71541831 | None:intergenic | 25.0% |
| ! | GGTGAAAAAAAATACTAAAC+TGG | - | chr3.4:71539842-71539861 | None:intergenic | 25.0% |
| ! | GTTTGAGAGAAATCATAAAA+TGG | + | chr3.4:71539042-71539061 | MS.gene007950:intron | 25.0% |
| ! | TAAACTCAAATAAGTACTTG+TGG | + | chr3.4:71539016-71539035 | MS.gene007950:intron | 25.0% |
| ! | TACAGAAAACTAATGTTTGT+TGG | + | chr3.4:71542559-71542578 | MS.gene007950:intron | 25.0% |
| ! | TATTATATGCCTAATCATTG+GGG | - | chr3.4:71541247-71541266 | None:intergenic | 25.0% |
| ! | TCTGATATTTAGTATTATGG+TGG | + | chr3.4:71543810-71543829 | MS.gene007950:intron | 25.0% |
| ! | TGTACAGATTAAACAAAAAG+TGG | - | chr3.4:71540396-71540415 | None:intergenic | 25.0% |
| ! | TGTTAGTAGATGGATAAAAA+AGG | + | chr3.4:71541929-71541948 | MS.gene007950:intron | 25.0% |
| ! | TTAACTCATAATACGTGATA+TGG | - | chr3.4:71540062-71540081 | None:intergenic | 25.0% |
| ! | TTACAGTTATTGCATATTGA+TGG | + | chr3.4:71539172-71539191 | MS.gene007950:CDS | 25.0% |
| !! | ACAACTTGAATGTTTGATTT+AGG | + | chr3.4:71540221-71540240 | MS.gene007950:intron | 25.0% |
| !! | ATGACTATTATACAGCATTT+TGG | - | chr3.4:71540130-71540149 | None:intergenic | 25.0% |
| !! | GTATTCTAAAAGAAACAAAG+GGG | - | chr3.4:71539593-71539612 | None:intergenic | 25.0% |
| !! | TATTCTAAAAGAAACAAAGG+GGG | - | chr3.4:71539592-71539611 | None:intergenic | 25.0% |
| !! | TTCAAATTTGACTTCTGTAA+AGG | + | chr3.4:71543385-71543404 | MS.gene007950:intron | 25.0% |
| !! | TTGTATAATGCTTTTGACAA+TGG | + | chr3.4:71543240-71543259 | MS.gene007950:CDS | 25.0% |
| !! | TTGTCTTCTTTTTCTATTCA+TGG | + | chr3.4:71539957-71539976 | MS.gene007950:intron | 25.0% |
| !!! | AAAACAAATTTTTGAGACAC+CGG | - | chr3.4:71541698-71541717 | None:intergenic | 25.0% |
| !!! | AACAAGGTTTTATCACAAAA+AGG | - | chr3.4:71539498-71539517 | None:intergenic | 25.0% |
| !!! | AATACTATCCAATCTTGTTT+TGG | + | chr3.4:71541955-71541974 | MS.gene007950:intron | 25.0% |
| !!! | AATTATGTTCCTCTGAAATT+CGG | - | chr3.4:71541282-71541301 | None:intergenic | 25.0% |
| !!! | ATTTTGGTCCTATAATTTCA+AGG | - | chr3.4:71540114-71540133 | None:intergenic | 25.0% |
| AAATATAAATGTAGCGGTGT+CGG | + | chr3.4:71542090-71542109 | MS.gene007950:intron | 30.0% | |
| AACAAAGTCATTGGAGATTT+AGG | - | chr3.4:71540519-71540538 | None:intergenic | 30.0% | |
| AACACATATTTCTTTGCAAG+AGG | - | chr3.4:71539154-71539173 | None:intergenic | 30.0% | |
| AATAGCTTACTATACTCCTT+CGG | - | chr3.4:71543440-71543459 | None:intergenic | 30.0% | |
| AATCAAAAAAGCCATAACAG+GGG | - | chr3.4:71543956-71543975 | None:intergenic | 30.0% | |
| AATTACACTGTGAGATATTG+CGG | + | chr3.4:71542858-71542877 | MS.gene007950:CDS | 30.0% | |
| ACAGCATTGCAGAAAATATT+TGG | - | chr3.4:71542903-71542922 | None:intergenic | 30.0% | |
| ACTAAACTGGGATAAAACAA+GGG | - | chr3.4:71539829-71539848 | None:intergenic | 30.0% | |
| AGAATGGAGTGGTTTATTAT+GGG | + | chr3.4:71544030-71544049 | MS.gene007950:CDS | 30.0% | |
| AGATGCAGAATGATTTAACT+TGG | + | chr3.4:71541387-71541406 | MS.gene007950:intron | 30.0% | |
| AGTGAAGGTTATTCAAATGA+AGG | - | chr3.4:71543499-71543518 | None:intergenic | 30.0% | |
| ATAACATGTCAATCGTTCAT+TGG | + | chr3.4:71542656-71542675 | MS.gene007950:intron | 30.0% | |
| ATAGCAGAAACATATAGAGA+AGG | - | chr3.4:71540979-71540998 | None:intergenic | 30.0% | |
| ATAGCTCCAACAATAAGATT+TGG | - | chr3.4:71543207-71543226 | None:intergenic | 30.0% | |
| ATATGTATGGAAGTTTCTGT+TGG | + | chr3.4:71542494-71542513 | MS.gene007950:intron | 30.0% | |
| ATGCTGTATAATAGTCATTC+CGG | + | chr3.4:71540132-71540151 | MS.gene007950:intron | 30.0% | |
| ATGTACCTTAATAGCAACAA+GGG | - | chr3.4:71540004-71540023 | None:intergenic | 30.0% | |
| CAAAGAAGAGCTTATGTTTA+AGG | - | chr3.4:71540599-71540618 | None:intergenic | 30.0% | |
| CAACTTCCAAATCTTATTGT+TGG | + | chr3.4:71543198-71543217 | MS.gene007950:CDS | 30.0% | |
| CAATTGAACCAATCTATCAA+TGG | - | chr3.4:71539263-71539282 | None:intergenic | 30.0% | |
| CAGTATTTGATGTCACAATT+TGG | + | chr3.4:71539696-71539715 | MS.gene007950:intron | 30.0% | |
| CTACTTAAACAAGTACTTGT+GGG | - | chr3.4:71538995-71539014 | None:intergenic | 30.0% | |
| CTTCCAGTTTAAATTTCCAT+AGG | - | chr3.4:71542995-71543014 | None:intergenic | 30.0% | |
| CTTCCTATGGAAATTTAAAC+TGG | + | chr3.4:71542989-71543008 | MS.gene007950:intron | 30.0% | |
| GAATCAAAAAAGCCATAACA+GGG | - | chr3.4:71543957-71543976 | None:intergenic | 30.0% | |
| GGAATATATCACTAATTCTG+AGG | + | chr3.4:71540937-71540956 | MS.gene007950:CDS | 30.0% | |
| GTAGAGTTTATCAAGTTTGA+TGG | - | chr3.4:71538685-71538704 | None:intergenic | 30.0% | |
| TAACAAACCTATATAGACGA+TGG | + | chr3.4:71540079-71540098 | MS.gene007950:intron | 30.0% | |
| TACTAAACTGGGATAAAACA+AGG | - | chr3.4:71539830-71539849 | None:intergenic | 30.0% | |
| TATGTACCTTAATAGCAACA+AGG | - | chr3.4:71540005-71540024 | None:intergenic | 30.0% | |
| TCATAATACGTGATATGGAA+GGG | - | chr3.4:71540057-71540076 | None:intergenic | 30.0% | |
| TCATCGTTATCATTGCATAT+TGG | - | chr3.4:71544173-71544192 | None:intergenic | 30.0% | |
| TCTACTTAAACAAGTACTTG+TGG | - | chr3.4:71538996-71539015 | None:intergenic | 30.0% | |
| TGAATCATCATCAAGAAAAG+AGG | + | chr3.4:71541540-71541559 | MS.gene007950:CDS | 30.0% | |
| TGCATTACATTAAGTTCAAG+TGG | - | chr3.4:71540842-71540861 | None:intergenic | 30.0% | |
| TGGTTACTCCTTGAAATTAT+AGG | + | chr3.4:71540103-71540122 | MS.gene007950:intron | 30.0% | |
| TGTTGTACTGTATCTCATAT+TGG | + | chr3.4:71540721-71540740 | MS.gene007950:intron | 30.0% | |
| TTATCGAAACATGACCTTAA+TGG | - | chr3.4:71538776-71538795 | None:intergenic | 30.0% | |
| TTCAAATGAAGGATTGAAGT+CGG | - | chr3.4:71543488-71543507 | None:intergenic | 30.0% | |
| TTGCAAATTCAGTGTGAAAT+GGG | + | chr3.4:71544372-71544391 | MS.gene007950:intron | 30.0% | |
| TTTGCAAATTCAGTGTGAAA+TGG | + | chr3.4:71544371-71544390 | MS.gene007950:intron | 30.0% | |
| ! | ACATTTTTAATGATGTGCCA+AGG | - | chr3.4:71541841-71541860 | None:intergenic | 30.0% |
| ! | ACTTGAATGTTTGATTTAGG+TGG | + | chr3.4:71540224-71540243 | MS.gene007950:intron | 30.0% |
| ! | AGATTCAAAGAAGATGCTTT+TGG | + | chr3.4:71544054-71544073 | MS.gene007950:CDS | 30.0% |
| ! | AGGTTTATAAATGCGTTGAT+TGG | + | chr3.4:71544447-71544466 | MS.gene007950:CDS | 30.0% |
| ! | ATACGGTTTAGATGATCTTT+TGG | + | chr3.4:71542405-71542424 | MS.gene007950:intron | 30.0% |
| ! | ATATGCAATGATAACGATGA+TGG | + | chr3.4:71544173-71544192 | MS.gene007950:intron | 30.0% |
| ! | CTTTGATGAAAATTTTCCAG+CGG | + | chr3.4:71540614-71540633 | MS.gene007950:CDS | 30.0% |
| ! | GAATTTGCTTTAAGTTAACG+AGG | + | chr3.4:71539671-71539690 | MS.gene007950:intron | 30.0% |
| ! | GTTTTCTGTAAGTTGTAGTA+TGG | - | chr3.4:71542549-71542568 | None:intergenic | 30.0% |
| ! | TACGGTTTAGATGATCTTTT+GGG | + | chr3.4:71542406-71542425 | MS.gene007950:intron | 30.0% |
| ! | TCAATTTGAGACTTGATATG+TGG | + | chr3.4:71543459-71543478 | MS.gene007950:intron | 30.0% |
| ! | TCCAGAATCTTTTAGTACAT+GGG | + | chr3.4:71539918-71539937 | MS.gene007950:CDS | 30.0% |
| ! | TGTAGCTTTCTTACTACTTT+TGG | - | chr3.4:71544126-71544145 | None:intergenic | 30.0% |
| ! | TTTTTACAACTTTATAGGGC+AGG | + | chr3.4:71541461-71541480 | MS.gene007950:intron | 30.0% |
| !! | AGATATTGCGGTTATTTTCA+AGG | + | chr3.4:71542870-71542889 | MS.gene007950:CDS | 30.0% |
| !! | AGCTTAGTTTTCATGTCATT+GGG | + | chr3.4:71541082-71541101 | MS.gene007950:CDS | 30.0% |
| !!! | AAACTGGAAGTTGTTTTTCA+TGG | + | chr3.4:71543005-71543024 | MS.gene007950:intron | 30.0% |
| !!! | AGGTTTGTTGCTAATTTTGT+TGG | - | chr3.4:71541505-71541524 | None:intergenic | 30.0% |
| !!! | ATTTTTTTTCACCTTCTTGC+AGG | + | chr3.4:71539849-71539868 | MS.gene007950:intron | 30.0% |
| !!! | GAAGTTGTTTTTCATGGAAT+AGG | + | chr3.4:71543011-71543030 | MS.gene007950:intron | 30.0% |
| !!! | TGATTTTTTCCCCAATGATT+AGG | + | chr3.4:71541235-71541254 | MS.gene007950:intron | 30.0% |
| AAAAAGAATGGGACACTTGT+CGG | - | chr3.4:71541800-71541819 | None:intergenic | 35.0% | |
| AAACCTATATAGACGATGGT+TGG | + | chr3.4:71540083-71540102 | MS.gene007950:intron | 35.0% | |
| AACAAAGACACACAAAGATG+TGG | - | chr3.4:71539756-71539775 | None:intergenic | 35.0% | |
| ACAACTTTGGTACATCATCA+GGG | + | chr3.4:71540916-71540935 | MS.gene007950:CDS | 35.0% | |
| ACACTTTCTGATGCATCTTA+TGG | + | chr3.4:71544143-71544162 | MS.gene007950:intron | 35.0% | |
| ACATATTTCTTTGCAAGAGG+TGG | - | chr3.4:71539151-71539170 | None:intergenic | 35.0% | |
| ACCCATGTACTAAAAGATTC+TGG | - | chr3.4:71539922-71539941 | None:intergenic | 35.0% | |
| AGCCTCACAGTAATATTAGA+AGG | - | chr3.4:71540304-71540323 | None:intergenic | 35.0% | |
| AGTTTCTGTTGGACATTATC+AGG | + | chr3.4:71542505-71542524 | MS.gene007950:intron | 35.0% | |
| ATAAGTCTCAAGATCCTCTA+AGG | - | chr3.4:71540332-71540351 | None:intergenic | 35.0% | |
| ATAGCTTACTATACTCCTTC+GGG | - | chr3.4:71543439-71543458 | None:intergenic | 35.0% | |
| ATCAGTTTGAACCATTTCAG+AGG | - | chr3.4:71539386-71539405 | None:intergenic | 35.0% | |
| ATTTGATGCGTACCAAAAAC+TGG | - | chr3.4:71540809-71540828 | None:intergenic | 35.0% | |
| CAAAGTTGCCATTGATAGAT+TGG | + | chr3.4:71539252-71539271 | MS.gene007950:CDS | 35.0% | |
| CAACTTATGGGCATATCATA+AGG | + | chr3.4:71538944-71538963 | MS.gene007950:intron | 35.0% | |
| CACATGCAACAGATAAAACA+AGG | - | chr3.4:71539514-71539533 | None:intergenic | 35.0% | |
| CCTTAGTTTAGGCTAACATT+TGG | - | chr3.4:71539434-71539453 | None:intergenic | 35.0% | |
| CTCATAATACGTGATATGGA+AGG | - | chr3.4:71540058-71540077 | None:intergenic | 35.0% | |
| CTTATAAGTAGTTATCCCGA+AGG | + | chr3.4:71543421-71543440 | MS.gene007950:intron | 35.0% | |
| CTTGATAAACTCTACGAGAA+TGG | + | chr3.4:71538690-71538709 | MS.gene007950:CDS | 35.0% | |
| GAACATGACAAAAGACTAGA+GGG | - | chr3.4:71542947-71542966 | None:intergenic | 35.0% | |
| GAGAATGGAGTGGTTTATTA+TGG | + | chr3.4:71544029-71544048 | MS.gene007950:CDS | 35.0% | |
| GATCATTGCCAAGAATTTCA+TGG | + | chr3.4:71538638-71538657 | MS.gene007950:CDS | 35.0% | |
| GATGTATAAGACAGTGAACA+GGG | - | chr3.4:71542258-71542277 | None:intergenic | 35.0% | |
| GCATTGCAGAAAATATTTGG+TGG | - | chr3.4:71542900-71542919 | None:intergenic | 35.0% | |
| GGAATCAAAAAAGCCATAAC+AGG | - | chr3.4:71543958-71543977 | None:intergenic | 35.0% | |
| GTGTTGTATGAGTATCATAG+AGG | - | chr3.4:71541764-71541783 | None:intergenic | 35.0% | |
| TAACCAACCATCGTCTATAT+AGG | - | chr3.4:71540089-71540108 | None:intergenic | 35.0% | |
| TAAGTTGCAACAAGAAACAC+TGG | - | chr3.4:71540552-71540571 | None:intergenic | 35.0% | |
| TAATAAACCACTCCATTCTC+TGG | - | chr3.4:71544029-71544048 | None:intergenic | 35.0% | |
| TACACCTTGTAATGTGTTGA+AGG | + | chr3.4:71539471-71539490 | MS.gene007950:intron | 35.0% | |
| TCTGTAAGTTGTAGTATGGA+CGG | - | chr3.4:71542545-71542564 | None:intergenic | 35.0% | |
| TGAACGATTGACATGTTATG+AGG | - | chr3.4:71542655-71542674 | None:intergenic | 35.0% | |
| TGACTTGATATCATTCATGC+TGG | + | chr3.4:71541059-71541078 | MS.gene007950:CDS | 35.0% | |
| TGCAAATTCAGTGTGAAATG+GGG | + | chr3.4:71544373-71544392 | MS.gene007950:intron | 35.0% | |
| TGCCTTCTAATATTACTGTG+AGG | + | chr3.4:71540299-71540318 | MS.gene007950:CDS | 35.0% | |
| TGGATACAAATGCACAACTT+TGG | + | chr3.4:71540903-71540922 | MS.gene007950:CDS | 35.0% | |
| TTACCGCAAAACAAAGTCAT+TGG | - | chr3.4:71540528-71540547 | None:intergenic | 35.0% | |
| TTAGCCTAAACTAAGGAGTT+TGG | + | chr3.4:71539438-71539457 | MS.gene007950:intron | 35.0% | |
| TTCACGTAGAATTTCAGTGA+AGG | - | chr3.4:71543514-71543533 | None:intergenic | 35.0% | |
| TTGCTATGAATTACAGCTGA+TGG | + | chr3.4:71540883-71540902 | MS.gene007950:intron | 35.0% | |
| TTTCTCAATGCCTACCATTA+AGG | + | chr3.4:71538759-71538778 | MS.gene007950:intron | 35.0% | |
| TTTGCACTCTGTCATATATG+TGG | + | chr3.4:71540697-71540716 | MS.gene007950:intron | 35.0% | |
| ! | AAGCCACTCTCAGTTAATTT+TGG | - | chr3.4:71540786-71540805 | None:intergenic | 35.0% |
| ! | ACGGTTTAGATGATCTTTTG+GGG | + | chr3.4:71542407-71542426 | MS.gene007950:intron | 35.0% |
| ! | AGTTTATCAAGTTTGATGGC+AGG | - | chr3.4:71538681-71538700 | None:intergenic | 35.0% |
| ! | CCAAATGTTAGCCTAAACTA+AGG | + | chr3.4:71539431-71539450 | MS.gene007950:intron | 35.0% |
| ! | CTCCAGAATCTTTTAGTACA+TGG | + | chr3.4:71539917-71539936 | MS.gene007950:CDS | 35.0% |
| ! | CTGTTTTGCTTGCATATGTA+TGG | + | chr3.4:71542481-71542500 | MS.gene007950:intron | 35.0% |
| ! | GACAATTTATGCCTCTGAAA+TGG | + | chr3.4:71539372-71539391 | MS.gene007950:intron | 35.0% |
| ! | GATTCCTTATGTCATTTGTG+TGG | + | chr3.4:71543972-71543991 | MS.gene007950:intron | 35.0% |
| ! | TATGAGTATCATAGAGGTGT+CGG | - | chr3.4:71541758-71541777 | None:intergenic | 35.0% |
| ! | TATTATGGTGGTGTCAGATT+AGG | + | chr3.4:71543822-71543841 | MS.gene007950:intron | 35.0% |
| ! | TTCAAAGAAGATGCTTTTGG+TGG | + | chr3.4:71544057-71544076 | MS.gene007950:CDS | 35.0% |
| ! | TTGTTCCCTTGTTGCTATTA+AGG | + | chr3.4:71539996-71540015 | MS.gene007950:intron | 35.0% |
| ! | TTTTTGTTGAAGCTCTTGAC+AGG | + | chr3.4:71539287-71539306 | MS.gene007950:CDS | 35.0% |
| !! | AATGGTAGGCATTGAGAAAT+AGG | - | chr3.4:71538758-71538777 | None:intergenic | 35.0% |
| !! | AGCTTTCTTACTACTTTTGG+CGG | - | chr3.4:71544123-71544142 | None:intergenic | 35.0% |
| !! | GAGCTTAGTTTTCATGTCAT+TGG | + | chr3.4:71541081-71541100 | MS.gene007950:CDS | 35.0% |
| !! | GCTTAGTTTTCATGTCATTG+GGG | + | chr3.4:71541083-71541102 | MS.gene007950:CDS | 35.0% |
| !! | TCAATCGTTTTGATCAAACG+AGG | + | chr3.4:71544427-71544446 | MS.gene007950:CDS | 35.0% |
| !!! | TCTCCAATGACTTTGTTTTG+CGG | + | chr3.4:71540522-71540541 | MS.gene007950:intron | 35.0% |
| !!! | TTTTCAGGGATTTGTTGTTG+TGG | + | chr3.4:71542799-71542818 | MS.gene007950:intron | 35.0% |
| AACTCCTTAGCTATGAAGCA+TGG | + | chr3.4:71541617-71541636 | MS.gene007950:intron | 40.0% | |
| AAGGCAATGTTGATCAACGA+GGG | + | chr3.4:71541864-71541883 | MS.gene007950:intron | 40.0% | |
| AATAAGCTGCGAGCAACTTA+TGG | + | chr3.4:71538931-71538950 | MS.gene007950:intron | 40.0% | |
| ACAAGGGTCGAAAGTGAAAA+TGG | - | chr3.4:71539813-71539832 | None:intergenic | 40.0% | |
| ACACATTGACCGAATTTCAG+AGG | + | chr3.4:71541270-71541289 | MS.gene007950:CDS | 40.0% | |
| AGAATCAAAGTTGCTTACCC+TGG | - | chr3.4:71543912-71543931 | None:intergenic | 40.0% | |
| AGACTTATGCTGTGGAACAA+TGG | + | chr3.4:71540344-71540363 | MS.gene007950:CDS | 40.0% | |
| AGGAAGTTCCAAAACCCAAA+GGG | - | chr3.4:71542975-71542994 | None:intergenic | 40.0% | |
| AGGTCCTTCAACACATTACA+AGG | - | chr3.4:71539478-71539497 | None:intergenic | 40.0% | |
| ATAAGCTGCGAGCAACTTAT+GGG | + | chr3.4:71538932-71538951 | MS.gene007950:intron | 40.0% | |
| ATTCAGTCATGCTCACTGAA+AGG | - | chr3.4:71541525-71541544 | None:intergenic | 40.0% | |
| ATTGTGGTACTCACTGTAGA+TGG | + | chr3.4:71543319-71543338 | MS.gene007950:intron | 40.0% | |
| CAAATTCAGTGTGAAATGGG+GGG | + | chr3.4:71544375-71544394 | MS.gene007950:intron | 40.0% | |
| CAAGAATTTCATGGACATGG+TGG | + | chr3.4:71538647-71538666 | MS.gene007950:CDS | 40.0% | |
| CACAACTTTGGTACATCATC+AGG | + | chr3.4:71540915-71540934 | MS.gene007950:CDS | 40.0% | |
| CACCATGTCCATGAAATTCT+TGG | - | chr3.4:71538649-71538668 | None:intergenic | 40.0% | |
| CACGTTCTTGTGGTTGAATA+TGG | + | chr3.4:71540250-71540269 | MS.gene007950:intron | 40.0% | |
| CATGTCAATCGTTCATTGGT+TGG | + | chr3.4:71542660-71542679 | MS.gene007950:intron | 40.0% | |
| CATTCCTCCAATAAGTTAGC+CGG | - | chr3.4:71539205-71539224 | None:intergenic | 40.0% | |
| CGAAACATGACCTTAATGGT+AGG | - | chr3.4:71538772-71538791 | None:intergenic | 40.0% | |
| GACTTATGCTGTGGAACAAT+GGG | + | chr3.4:71540345-71540364 | MS.gene007950:CDS | 40.0% | |
| GATACTCATACAACACGTGT+TGG | + | chr3.4:71541768-71541787 | MS.gene007950:intron | 40.0% | |
| GCAAATTCAGTGTGAAATGG+GGG | + | chr3.4:71544374-71544393 | MS.gene007950:intron | 40.0% | |
| GCTCCAAAATTAACTGAGAG+TGG | + | chr3.4:71540780-71540799 | MS.gene007950:CDS | 40.0% | |
| GGAACATGACAAAAGACTAG+AGG | - | chr3.4:71542948-71542967 | None:intergenic | 40.0% | |
| GGATGTATAAGACAGTGAAC+AGG | - | chr3.4:71542259-71542278 | None:intergenic | 40.0% | |
| GGCTAACTTATTGGAGGAAT+GGG | + | chr3.4:71539204-71539223 | MS.gene007950:CDS | 40.0% | |
| GTGTCCAAACTCCTTAGTTT+AGG | - | chr3.4:71539445-71539464 | None:intergenic | 40.0% | |
| TAGGAAGTTCCAAAACCCAA+AGG | - | chr3.4:71542976-71542995 | None:intergenic | 40.0% | |
| TATAGGGCAGGAAAGAAAGT+TGG | + | chr3.4:71541473-71541492 | MS.gene007950:intron | 40.0% | |
| TATGAAGCATGGACACCTAA+AGG | + | chr3.4:71541628-71541647 | MS.gene007950:intron | 40.0% | |
| TGCAGATAGTCAGTTTCCTT+CGG | + | chr3.4:71543678-71543697 | MS.gene007950:intron | 40.0% | |
| TGCCAAGAATTTCATGGACA+TGG | + | chr3.4:71538644-71538663 | MS.gene007950:CDS | 40.0% | |
| TTGTGCTTTGATAGACCATC+TGG | - | chr3.4:71539235-71539254 | None:intergenic | 40.0% | |
| ! | AAGGTCTTGTCAACATGACT+TGG | - | chr3.4:71540580-71540599 | None:intergenic | 40.0% |
| ! | ACAAGTACTTGTGGGCTATT+TGG | - | chr3.4:71538987-71539006 | None:intergenic | 40.0% |
| ! | ACCTGATCTGTGACATTTTC+AGG | - | chr3.4:71543746-71543765 | None:intergenic | 40.0% |
| ! | AGGTCTTGTCAACATGACTT+GGG | - | chr3.4:71540579-71540598 | None:intergenic | 40.0% |
| ! | CATCAGTCTGAAGTAGTAAC+AGG | - | chr3.4:71542631-71542650 | None:intergenic | 40.0% |
| ! | CGGTTTAGATGATCTTTTGG+GGG | + | chr3.4:71542408-71542427 | MS.gene007950:intron | 40.0% |
| ! | TAGTTTTCATGTCATTGGGG+AGG | + | chr3.4:71541086-71541105 | MS.gene007950:CDS | 40.0% |
| ! | TGCAATGATAACGATGATGG+AGG | + | chr3.4:71544176-71544195 | MS.gene007950:intron | 40.0% |
| ! | TGCTCTTCATCGTCTACTTT+TGG | + | chr3.4:71541011-71541030 | MS.gene007950:intron | 40.0% |
| ! | TTTTCGTTCTTCCTGCAAGA+AGG | - | chr3.4:71539863-71539882 | None:intergenic | 40.0% |
| !! | GCAATGATAACGATGATGGA+GGG | + | chr3.4:71544177-71544196 | MS.gene007950:intron | 40.0% |
| !! | TAGATGATCTTTTGGGGGAA+GGG | + | chr3.4:71542413-71542432 | MS.gene007950:intron | 40.0% |
| !! | TCTCAAGATCCTCTAAGGTT+GGG | - | chr3.4:71540327-71540346 | None:intergenic | 40.0% |
| !! | TTAGAAGGCATTGATTCCCT+CGG | - | chr3.4:71540289-71540308 | None:intergenic | 40.0% |
| !! | TTAGATGATCTTTTGGGGGA+AGG | + | chr3.4:71542412-71542431 | MS.gene007950:intron | 40.0% |
| !!! | TTGGGTTTTGGAACTTCCTA+TGG | + | chr3.4:71542976-71542995 | MS.gene007950:intron | 40.0% |
| AGGCAATGTTGATCAACGAG+GGG | + | chr3.4:71541865-71541884 | MS.gene007950:intron | 45.0% | |
| AGTTCCAAAACCCAAAGGGA+AGG | - | chr3.4:71542971-71542990 | None:intergenic | 45.0% | |
| ATTAAGGACCTTGCAGACCT+TGG | + | chr3.4:71541299-71541318 | MS.gene007950:CDS | 45.0% | |
| ATTATGACGAGTTCCCATCC+AGG | + | chr3.4:71543891-71543910 | MS.gene007950:CDS | 45.0% | |
| CAAAGTTGCTTACCCTGGAT+GGG | - | chr3.4:71543907-71543926 | None:intergenic | 45.0% | |
| CCTGCCACACAAATGACATA+AGG | - | chr3.4:71543979-71543998 | None:intergenic | 45.0% | |
| CGGCTAACTTATTGGAGGAA+TGG | + | chr3.4:71539203-71539222 | MS.gene007950:CDS | 45.0% | |
| CTAAAGGATTAGGCGTGTCA+CGG | + | chr3.4:71541644-71541663 | MS.gene007950:intron | 45.0% | |
| CTGGTCAAACTTCAACAGGT+TGG | + | chr3.4:71541323-71541342 | MS.gene007950:intron | 45.0% | |
| CTTGTGGTTGAATATGGCAG+TGG | + | chr3.4:71540256-71540275 | MS.gene007950:intron | 45.0% | |
| GAAGGCAATGTTGATCAACG+AGG | + | chr3.4:71541863-71541882 | MS.gene007950:intron | 45.0% | |
| GCATGGACACCTAAAGGATT+AGG | + | chr3.4:71541634-71541653 | MS.gene007950:intron | 45.0% | |
| GCCTGAAAATGTCACAGATC+AGG | + | chr3.4:71543742-71543761 | MS.gene007950:CDS | 45.0% | |
| GGATCTTGAGACTTATGCTG+TGG | + | chr3.4:71540336-71540355 | MS.gene007950:CDS | 45.0% | |
| GGGCTATTTGGAAGAGCTTA+TGG | - | chr3.4:71538975-71538994 | None:intergenic | 45.0% | |
| GTAAACAGAACCTCTGACTC+AGG | - | chr3.4:71540645-71540664 | None:intergenic | 45.0% | |
| GTCTTACGTATCCCCTGTTA+TGG | + | chr3.4:71543942-71543961 | MS.gene007950:intron | 45.0% | |
| GTGTCCATGCTTCATAGCTA+AGG | - | chr3.4:71541624-71541643 | None:intergenic | 45.0% | |
| GTGTGGCAGGATGTATTTGA+AGG | + | chr3.4:71543989-71544008 | MS.gene007950:intron | 45.0% | |
| GTTCCAAAACCCAAAGGGAA+GGG | - | chr3.4:71542970-71542989 | None:intergenic | 45.0% | |
| GTTGGACATTATCAGGCTCT+GGG | + | chr3.4:71542512-71542531 | MS.gene007950:intron | 45.0% | |
| TAGGTGGTAACACGTTCTTG+TGG | + | chr3.4:71540240-71540259 | MS.gene007950:intron | 45.0% | |
| TCAAAGTTGCTTACCCTGGA+TGG | - | chr3.4:71543908-71543927 | None:intergenic | 45.0% | |
| TCATCTGCGAAGCTATTCTC+AGG | + | chr3.4:71538715-71538734 | MS.gene007950:CDS | 45.0% | |
| TGTGCAACAGATTCTCAGCA+AGG | - | chr3.4:71541127-71541146 | None:intergenic | 45.0% | |
| TGTTGGACATTATCAGGCTC+TGG | + | chr3.4:71542511-71542530 | MS.gene007950:intron | 45.0% | |
| TTAAGGACCTTGCAGACCTT+GGG | + | chr3.4:71541300-71541319 | MS.gene007950:CDS | 45.0% | |
| TTATGACGAGTTCCCATCCA+GGG | + | chr3.4:71543892-71543911 | MS.gene007950:CDS | 45.0% | |
| TTATGCTGTGGAACAATGGG+AGG | + | chr3.4:71540348-71540367 | MS.gene007950:CDS | 45.0% | |
| TTCCAAAACCCAAAGGGAAG+GGG | - | chr3.4:71542969-71542988 | None:intergenic | 45.0% | |
| TTCTTTGCTTCGACACACCT+TGG | + | chr3.4:71541821-71541840 | MS.gene007950:intron | 45.0% | |
| TTCTTTGCTTCGACACTCGT+TGG | + | chr3.4:71541724-71541743 | MS.gene007950:intron | 45.0% | |
| TTGGCAATGATCCTAACCTC+AGG | - | chr3.4:71538630-71538649 | None:intergenic | 45.0% | |
| ! | CCTTATGTCATTTGTGTGGC+AGG | + | chr3.4:71543976-71543995 | MS.gene007950:intron | 45.0% |
| ! | GTGGTGTCAGATTAGGTTGT+GGG | + | chr3.4:71543829-71543848 | MS.gene007950:intron | 45.0% |
| ! | TGAGAGTGGCTTCCAGTTTT+TGG | + | chr3.4:71540794-71540813 | MS.gene007950:CDS | 45.0% |
| !! | AGATGATCTTTTGGGGGAAG+GGG | + | chr3.4:71542414-71542433 | MS.gene007950:intron | 45.0% |
| !! | CGTTCATTGGTTGGCTTTAG+TGG | + | chr3.4:71542669-71542688 | MS.gene007950:intron | 45.0% |
| !! | GTCTCAAGATCCTCTAAGGT+TGG | - | chr3.4:71540328-71540347 | None:intergenic | 45.0% |
| !! | TCATCGTCTACTTTTGGTGC+AGG | + | chr3.4:71541017-71541036 | MS.gene007950:intron | 45.0% |
| !! | ACATAATAAATTTAATTAAA+AGG | - | chr3.4:71542297-71542316 | None:intergenic | 5.0% |
| !! | AGTATATATTTAATTATATA+CGG | + | chr3.4:71542388-71542407 | MS.gene007950:intron | 5.0% |
| ATAGCTCCTCAGACATGCCA+AGG | + | chr3.4:71542176-71542195 | MS.gene007950:intron | 50.0% | |
| CAATGGCATTACAGCAGACC+AGG | + | chr3.4:71543257-71543276 | MS.gene007950:CDS | 50.0% | |
| CGACGTGTCAATATCGTGTC+AGG | + | chr3.4:71542141-71542160 | MS.gene007950:intron | 50.0% | |
| CGTGACACGCCTAATCCTTT+AGG | - | chr3.4:71541646-71541665 | None:intergenic | 50.0% | |
| GGCAATGTTGATCAACGAGG+GGG | + | chr3.4:71541866-71541885 | MS.gene007950:intron | 50.0% | |
| GTCATGTTCCCCTTCCCTTT+GGG | + | chr3.4:71542958-71542977 | MS.gene007950:intron | 50.0% | |
| GTTGAAGTTTGACCAGCCCA+AGG | - | chr3.4:71541319-71541338 | None:intergenic | 50.0% | |
| TAGCTCCTCAGACATGCCAA+GGG | + | chr3.4:71542177-71542196 | MS.gene007950:intron | 50.0% | |
| TCATCCTCGTGTTGCACAGA+GGG | + | chr3.4:71543709-71543728 | MS.gene007950:CDS | 50.0% | |
| TCCAATAAGTTAGCCGGCAC+AGG | - | chr3.4:71539199-71539218 | None:intergenic | 50.0% | |
| TGAACAGGGCACAGAGAGAA+AGG | - | chr3.4:71542244-71542263 | None:intergenic | 50.0% | |
| TGCTTCGACACTCGTTGGAT+TGG | + | chr3.4:71541729-71541748 | MS.gene007950:intron | 50.0% | |
| TGTCATGTTCCCCTTCCCTT+TGG | + | chr3.4:71542957-71542976 | MS.gene007950:intron | 50.0% | |
| TTGGCATGTCTGAGGAGCTA+TGG | - | chr3.4:71542177-71542196 | None:intergenic | 50.0% | |
| ! | AGAGTTGGTCCGACACTTGT+CGG | - | chr3.4:71541673-71541692 | None:intergenic | 50.0% |
| ! | GCATATTGATGGACCTGTGC+CGG | + | chr3.4:71539183-71539202 | MS.gene007950:CDS | 50.0% |
| ! | GGTGGTGTCAGATTAGGTTG+TGG | + | chr3.4:71543828-71543847 | MS.gene007950:intron | 50.0% |
| ! | TTTGAGACACCGGTCAGAGT+TGG | - | chr3.4:71541688-71541707 | None:intergenic | 50.0% |
| !! | ACCTGTGCCGGCTAACTTAT+TGG | + | chr3.4:71539195-71539214 | MS.gene007950:CDS | 50.0% |
| !! | CTACTTTTGGTGCAGGAGAG+AGG | + | chr3.4:71541024-71541043 | MS.gene007950:intron | 50.0% |
| !! | GCTTTTGGTGGTCAAGTCTG+AGG | + | chr3.4:71544069-71544088 | MS.gene007950:CDS | 50.0% |
| !! | GTGACATTTTCAGGCACTGC+TGG | - | chr3.4:71543737-71543756 | None:intergenic | 50.0% |
| !! | TGGGCTGGTCAAACTTCAAC+AGG | + | chr3.4:71541319-71541338 | MS.gene007950:CDS | 50.0% |
| !! | TGTGCCGGCTAACTTATTGG+AGG | + | chr3.4:71539198-71539217 | MS.gene007950:CDS | 50.0% |
| !! | TTCCCCTTCCCTTTGGGTTT+TGG | + | chr3.4:71542964-71542983 | MS.gene007950:intron | 50.0% |
| !!! | TCAGTTTTGAACGTGCTCCG+TGG | + | chr3.4:71539088-71539107 | MS.gene007950:intron | 50.0% |
| ATGGCAGTGGAACTTTGCCG+AGG | + | chr3.4:71540269-71540288 | MS.gene007950:intron | 55.0% | |
| CTCATCCTCGTGTTGCACAG+AGG | + | chr3.4:71543708-71543727 | MS.gene007950:CDS | 55.0% | |
| GAGGAATGGGTGCTTCCAGA+TGG | + | chr3.4:71539217-71539236 | MS.gene007950:CDS | 55.0% | |
| GAGGATGAGCATTCTGCCGA+AGG | - | chr3.4:71543697-71543716 | None:intergenic | 55.0% | |
| TCACGGTGTCCGACAAGTGT+CGG | + | chr3.4:71541661-71541680 | MS.gene007950:intron | 55.0% | |
| TGGCAGTGGAACTTTGCCGA+GGG | + | chr3.4:71540270-71540289 | MS.gene007950:intron | 55.0% | |
| TGTGAGGCTCCCAACCTTAG+AGG | + | chr3.4:71540315-71540334 | MS.gene007950:CDS | 55.0% | |
| ! | AGTGTCGGACCAACTCTGAC+CGG | + | chr3.4:71541676-71541695 | MS.gene007950:intron | 55.0% |
| !! | CAGGAGAGAGGTGTTGATGC+TGG | + | chr3.4:71541036-71541055 | MS.gene007950:intron | 55.0% |
| !! | CGATGATGGAGGGAGCAATG+TGG | + | chr3.4:71544187-71544206 | MS.gene007950:intron | 55.0% |
| CACTACAGAGCCTCCACCCT+TGG | - | chr3.4:71542196-71542215 | None:intergenic | 60.0% | |
| CCATTCTCTGGCGCAGTCAC+AGG | - | chr3.4:71544017-71544036 | None:intergenic | 60.0% | |
| CCTGTGACTGCGCCAGAGAA+TGG | + | chr3.4:71544014-71544033 | MS.gene007950:CDS | 60.0% | |
| CTCAGACATGCCAAGGGTGG+AGG | + | chr3.4:71542183-71542202 | MS.gene007950:intron | 60.0% | |
| CTCCACCCTTGGCATGTCTG+AGG | - | chr3.4:71542185-71542204 | None:intergenic | 60.0% | |
| CTCCTCAGACATGCCAAGGG+TGG | + | chr3.4:71542180-71542199 | MS.gene007950:intron | 60.0% | |
| GACTGCGCCAGAGAATGGAG+TGG | + | chr3.4:71544019-71544038 | MS.gene007950:CDS | 60.0% | |
| GGTACCCTCTGTGCAACACG+AGG | - | chr3.4:71543716-71543735 | None:intergenic | 60.0% | |
| TGACCAGCCCAAGGTCTGCA+AGG | - | chr3.4:71541310-71541329 | None:intergenic | 60.0% | |
| AGCGGCGTCTCCTGAGTCAG+AGG | + | chr3.4:71540632-71540651 | MS.gene007950:CDS | 65.0% | |
| GGACCTTGCAGACCTTGGGC+TGG | + | chr3.4:71541304-71541323 | MS.gene007950:CDS | 65.0% | |
| TCTGACTCAGGAGACGCCGC+TGG | - | chr3.4:71540633-71540652 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 71538624 | 71544473 | 71538624 | ID=MS.gene007950 |
| chr3.4 | mRNA | 71538624 | 71544473 | 71538624 | ID=MS.gene007950.t1;Parent=MS.gene007950 |
| chr3.4 | exon | 71538624 | 71538736 | 71538624 | ID=MS.gene007950.t1.exon1;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71538624 | 71538736 | 71538624 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71539141 | 71539308 | 71539141 | ID=MS.gene007950.t1.exon2;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71539141 | 71539308 | 71539141 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71539871 | 71539939 | 71539871 | ID=MS.gene007950.t1.exon3;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71539871 | 71539939 | 71539871 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71540276 | 71540369 | 71540276 | ID=MS.gene007950.t1.exon4;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71540276 | 71540369 | 71540276 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71540553 | 71540653 | 71540553 | ID=MS.gene007950.t1.exon5;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71540553 | 71540653 | 71540553 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71540770 | 71540815 | 71540770 | ID=MS.gene007950.t1.exon6;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71540770 | 71540815 | 71540770 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71540899 | 71540958 | 71540899 | ID=MS.gene007950.t1.exon7;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71540899 | 71540958 | 71540899 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71541039 | 71541107 | 71541039 | ID=MS.gene007950.t1.exon8;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71541039 | 71541107 | 71541039 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71541257 | 71541340 | 71541257 | ID=MS.gene007950.t1.exon9;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71541257 | 71541340 | 71541257 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71541478 | 71541561 | 71541478 | ID=MS.gene007950.t1.exon10;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71541478 | 71541561 | 71541478 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71542806 | 71542891 | 71542806 | ID=MS.gene007950.t1.exon11;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71542806 | 71542891 | 71542806 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71543188 | 71543278 | 71543188 | ID=MS.gene007950.t1.exon12;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71543188 | 71543278 | 71543188 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71543683 | 71543763 | 71543683 | ID=MS.gene007950.t1.exon13;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71543683 | 71543763 | 71543683 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71543839 | 71543913 | 71543839 | ID=MS.gene007950.t1.exon14;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71543839 | 71543913 | 71543839 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71543998 | 71544090 | 71543998 | ID=MS.gene007950.t1.exon15;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71543998 | 71544090 | 71543998 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| chr3.4 | exon | 71544384 | 71544473 | 71544384 | ID=MS.gene007950.t1.exon16;Parent=MS.gene007950.t1 |
| chr3.4 | CDS | 71544384 | 71544473 | 71544384 | ID=cds.MS.gene007950.t1;Parent=MS.gene007950.t1 |
| Gene Sequence |
| Protein sequence |
