AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009763

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009763.t1 MTR_5g073200 95.082 549 27 0 1 549 1 549 0.0 1076
MS.gene009763.t1 MTR_5g073260 74.816 544 136 1 5 547 7 550 0.0 867
MS.gene009763.t1 MTR_3g464190 73.077 546 147 0 4 549 12 557 0.0 867
MS.gene009763.t1 MTR_5g094620 71.795 546 134 1 4 549 12 537 0.0 833
MS.gene009763.t1 MTR_6g008560 65.082 547 189 2 4 549 12 557 0.0 763
MS.gene009763.t1 MTR_4g048460 66.117 546 184 1 4 549 17 561 0.0 754
MS.gene009763.t1 MTR_5g062230 64.391 542 192 1 8 549 13 553 0.0 750
MS.gene009763.t1 MTR_6g039440 64.207 542 193 1 8 549 13 553 0.0 749
MS.gene009763.t1 MTR_4g081460 56.673 547 233 3 5 549 18 562 0.0 649
MS.gene009763.t1 MTR_4g048460 64.811 449 157 1 4 452 17 464 0.0 601
MS.gene009763.t1 MTR_6g008560 62.344 401 151 0 149 549 1 401 0.0 540
MS.gene009763.t1 MTR_2g082010 44.161 548 301 5 5 549 23 568 3.19e-172 499
MS.gene009763.t1 MTR_2g081980 43.898 549 301 6 6 549 11 557 2.92e-169 491
MS.gene009763.t1 MTR_8g007515 44.828 551 295 7 5 549 9 556 1.35e-166 484
MS.gene009763.t1 MTR_2g082060 41.530 549 303 7 6 549 18 553 2.87e-153 450
MS.gene009763.t1 MTR_4g019550 39.783 553 312 8 6 549 18 558 2.46e-138 412
MS.gene009763.t1 MTR_2g082050 39.300 514 252 8 37 547 1 457 1.88e-122 368
MS.gene009763.t1 MTR_2g064425 36.182 550 333 10 3 547 48 584 3.92e-106 330
MS.gene009763.t1 MTR_4g045810 34.196 541 350 4 8 547 44 579 4.08e-101 317
MS.gene009763.t1 MTR_8g057020 34.191 544 346 7 7 547 53 587 1.10e-99 313
MS.gene009763.t1 MTR_2g064425 34.727 550 326 11 3 547 48 569 4.15e-99 311
MS.gene009763.t1 MTR_2g089120 35.628 494 296 9 44 530 70 548 1.76e-92 294
MS.gene009763.t1 MTR_2g065450 33.210 542 348 9 9 547 58 588 2.24e-92 295
MS.gene009763.t1 MTR_2g089130 33.929 504 315 7 31 530 58 547 7.25e-92 292
MS.gene009763.t1 MTR_2g064425 42.547 369 201 6 3 369 48 407 9.60e-86 273
MS.gene009763.t1 MTR_5g094530 57.014 221 58 3 159 377 1 186 1.59e-84 261
MS.gene009763.t1 MTR_4g092010 31.590 497 320 7 57 545 72 556 2.55e-82 268
MS.gene009763.t1 MTR_7g010710 31.387 548 363 9 4 546 13 552 3.82e-82 266
MS.gene009763.t1 MTR_4g092020 31.445 512 337 6 40 547 68 569 1.55e-81 266
MS.gene009763.t1 MTR_2g064425 40.379 369 194 7 3 369 48 392 5.54e-79 254
MS.gene009763.t1 MTR_7g057340 60.465 172 68 0 378 549 1 172 9.71e-73 229
MS.gene009763.t1 MTR_2g010960 29.412 527 348 10 31 543 1 517 1.10e-70 236
MS.gene009763.t1 MTR_7g057390 58.721 172 68 1 378 549 1 169 6.59e-67 214
MS.gene009763.t1 MTR_3g465090 28.974 497 340 8 55 541 21 514 1.96e-62 214
MS.gene009763.t1 MTR_3g015080 57.558 172 35 2 378 549 1 134 3.90e-62 201
MS.gene009763.t1 MTR_7g050990 62.424 165 51 2 193 357 28 181 1.37e-61 218
MS.gene009763.t1 MTR_3g052120 29.283 502 330 13 56 543 22 512 6.75e-60 207
MS.gene009763.t1 MTR_3g063170 27.642 492 349 4 55 539 21 512 9.92e-60 206
MS.gene009763.t1 MTR_6g064980 27.273 495 347 6 55 539 21 512 2.73e-59 205
MS.gene009763.t1 MTR_3g063120 27.673 477 333 6 60 527 1 474 6.68e-58 201
MS.gene009763.t1 MTR_3g063140 27.273 495 347 6 55 539 21 512 9.01e-58 201
MS.gene009763.t1 MTR_6g065040 27.806 392 270 6 145 527 9 396 5.70e-48 172
MS.gene009763.t1 MTR_3g063160 31.365 271 179 3 55 321 21 288 7.89e-36 135
MS.gene009763.t1 MTR_3g058160 24.618 524 338 16 62 547 65 569 3.36e-34 137
MS.gene009763.t1 MTR_3g058160 24.618 524 338 16 62 547 276 780 8.96e-34 137
MS.gene009763.t1 MTR_3g058160 24.618 524 338 16 62 547 269 773 1.08e-33 136
MS.gene009763.t1 MTR_3g058160 24.618 524 338 16 62 547 256 760 1.21e-33 136
MS.gene009763.t1 MTR_2g012900 25.743 505 327 16 16 484 212 704 8.46e-32 130
MS.gene009763.t1 MTR_3g058160 23.670 545 338 16 62 547 276 801 4.94e-31 128
MS.gene009763.t1 MTR_2g064295 23.396 530 341 20 62 549 256 762 2.87e-30 126
MS.gene009763.t1 MTR_2g012870 25.407 492 333 13 62 528 254 736 1.58e-29 124
MS.gene009763.t1 MTR_7g011770 30.537 298 177 8 58 327 238 533 3.77e-22 101
MS.gene009763.t1 MTR_7g011663 29.699 266 158 7 60 298 344 607 7.16e-22 100
MS.gene009763.t1 MTR_7g094970 26.259 278 168 8 60 306 206 477 1.78e-20 95.9
MS.gene009763.t1 MTR_5g030050 27.170 265 159 7 65 305 3 257 3.88e-18 85.9
MS.gene009763.t1 MTR_5g081730 42.222 90 52 0 155 244 16 105 2.66e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009763.t1 AT5G23960 39.011 546 329 4 5 549 3 545 3.61e-149 439
MS.gene009763.t1 AT5G23960 39.051 548 328 5 5 549 3 547 4.92e-148 437
MS.gene009763.t1 AT3G14520 35.807 539 337 5 14 547 68 602 2.85e-120 367
MS.gene009763.t1 AT1G70080 37.044 548 336 8 9 549 66 611 9.39e-120 366
MS.gene009763.t1 AT3G14490 36.697 545 334 7 9 547 60 599 1.01e-118 363
MS.gene009763.t1 AT1G31950 34.323 539 345 5 14 547 70 604 1.26e-115 355
MS.gene009763.t1 AT1G31950 34.259 540 345 6 14 547 70 605 5.83e-115 353
MS.gene009763.t1 AT3G14540 35.807 539 337 5 14 547 65 599 9.99e-115 353
MS.gene009763.t1 AT3G29410 34.871 542 346 5 9 547 64 601 1.21e-113 350
MS.gene009763.t1 AT1G33750 34.679 545 341 6 9 547 66 601 1.79e-110 342
MS.gene009763.t1 AT3G32030 34.381 541 346 6 14 549 68 604 8.49e-108 335
MS.gene009763.t1 AT5G44630 35.081 553 341 9 8 549 12 557 1.08e-107 333
MS.gene009763.t1 AT3G29410 34.469 499 322 3 51 547 1 496 1.59e-104 323
MS.gene009763.t1 AT4G15870 34.694 539 327 11 17 547 75 596 1.81e-99 313
MS.gene009763.t1 AT4G13300 32.961 537 350 7 17 547 20 552 3.12e-99 311
MS.gene009763.t1 AT3G29110 33.211 545 354 7 9 547 55 595 1.24e-95 303
MS.gene009763.t1 AT3G14540 36.242 447 277 4 14 456 65 507 8.18e-95 298
MS.gene009763.t1 AT2G23230 32.724 547 354 9 8 545 55 596 3.04e-94 300
MS.gene009763.t1 AT4G20210 30.292 548 372 6 8 549 57 600 3.87e-94 300
MS.gene009763.t1 AT3G25830 32.737 559 349 11 6 547 44 592 9.64e-94 298
MS.gene009763.t1 AT3G25820 32.737 559 349 11 6 547 44 592 9.64e-94 298
MS.gene009763.t1 AT1G31950 34.136 457 291 6 14 464 70 522 6.43e-93 294
MS.gene009763.t1 AT4G13280 32.523 535 351 7 19 547 22 552 1.44e-92 294
MS.gene009763.t1 AT2G23230 32.601 546 351 9 8 545 55 591 1.89e-92 295
MS.gene009763.t1 AT3G29190 31.978 541 350 8 17 547 67 599 3.74e-92 294
MS.gene009763.t1 AT4G20200 31.193 545 365 6 9 547 62 602 4.48e-92 294
MS.gene009763.t1 AT4G16730 31.792 519 331 8 44 547 27 537 3.38e-91 290
MS.gene009763.t1 AT4G20230 31.716 536 355 9 17 545 70 601 7.14e-91 291
MS.gene009763.t1 AT4G20230 31.716 536 355 9 17 545 82 613 7.70e-91 291
MS.gene009763.t1 AT4G16730 31.928 498 317 7 65 547 1 491 3.01e-89 283
MS.gene009763.t1 AT2G24210 31.769 554 356 13 7 547 44 588 6.08e-89 286
MS.gene009763.t1 AT3G25810 32.321 560 353 12 6 547 44 595 4.47e-88 283
MS.gene009763.t1 AT4G16740 31.818 550 351 10 9 547 26 562 2.91e-87 280
MS.gene009763.t1 AT1G48800 30.037 546 369 9 8 545 62 602 1.06e-82 270
MS.gene009763.t1 AT1G61680 30.200 500 332 4 48 539 79 569 1.47e-82 268
MS.gene009763.t1 AT4G13280 31.402 535 327 9 19 547 22 522 3.66e-82 266
MS.gene009763.t1 AT1G61680 30.000 500 326 5 48 539 79 562 7.52e-80 261
MS.gene009763.t1 AT1G48820 30.530 547 323 12 8 545 62 560 4.71e-78 256
MS.gene009763.t1 AT1G66020 28.571 553 382 7 4 547 48 596 5.57e-77 254
MS.gene009763.t1 AT3G25820 35.825 388 229 7 6 382 44 422 1.64e-73 241
MS.gene009763.t1 AT4G16740 37.719 342 194 7 9 340 26 358 2.13e-69 229
MS.gene009763.t1 AT5G48110 33.918 342 221 5 209 549 2 339 1.06e-65 217
MS.gene009763.t1 AT4G16740 37.538 325 184 7 9 323 26 341 1.01e-61 207
MS.gene009763.t1 AT4G16740 37.538 325 184 7 9 323 26 341 1.01e-61 207
MS.gene009763.t1 AT3G25820 37.082 329 187 7 6 323 44 363 1.10e-61 208
MS.gene009763.t1 AT3G25820 37.082 329 187 7 6 323 44 363 1.10e-61 208
MS.gene009763.t1 AT1G66020 30.748 361 240 6 9 363 56 412 2.17e-55 192
MS.gene009763.t1 AT1G61120 24.708 514 351 16 60 549 283 784 9.91e-29 121
MS.gene009763.t1 AT1G79460 23.180 522 347 20 62 547 274 777 1.58e-26 114
MS.gene009763.t1 AT4G02780 30.370 270 157 8 60 301 329 595 2.43e-21 99.0

Find 99 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATGAAAACTTACTTATTT+TGG 0.114589 5.3:+58059401 MS.gene009763:CDS
CATAAGAATTATGTTGAAAA+TGG 0.214259 5.3:+58058215 MS.gene009763:CDS
GTTAATGCTGCTATTGTTAT+TGG 0.221767 5.3:+58061082 MS.gene009763:CDS
GGTTCGTGGAGAGGATATTT+TGG 0.257686 5.3:+58059212 MS.gene009763:CDS
CGAAGGATCCTTCTCGTATA+TGG 0.273268 5.3:-58059376 None:intergenic
GCTCTCTTGCTGTGCTGTTT+AGG 0.289389 5.3:+58058267 MS.gene009763:CDS
AGAACATATGTCCTCATTCT+TGG 0.289423 5.3:+58061432 MS.gene009763:CDS
CATTTCTTCGTAAAGATCTA+AGG 0.293584 5.3:-58060179 None:intergenic
ATTTCTATGCAAGTCAGATT+TGG 0.293781 5.3:-58057521 None:intergenic
AATTGATTCAATATGTCGTT+TGG 0.310092 5.3:+58058142 MS.gene009763:CDS
ATAATTATTGTTTAACCATC+TGG 0.336699 5.3:-58060921 None:intergenic
CAGATTATAAACCTAGCGTT+TGG 0.339466 5.3:+58057548 MS.gene009763:CDS
TCGATATGCTTCAGAATCTA+TGG 0.349017 5.3:+58057585 MS.gene009763:CDS
TTTCTATGCAAGTCAGATTT+GGG 0.358300 5.3:-58057520 None:intergenic
TTGATATGTACCAGTTTCAT+TGG 0.363499 5.3:+58061001 MS.gene009763:CDS
CTTAGATCTTTACGAAGAAA+TGG 0.371093 5.3:+58060180 MS.gene009763:CDS
AGATTATAAACCTAGCGTTT+GGG 0.382808 5.3:+58057549 MS.gene009763:CDS
TTGTAGATGGTGGAAGGAAT+TGG 0.385282 5.3:+58059587 MS.gene009763:intron
TATTGTTATTGGCAGGATAA+TGG 0.387149 5.3:+58061093 MS.gene009763:CDS
ATGTACCAGTTTCATTGGTA+TGG 0.389719 5.3:+58061006 MS.gene009763:CDS
TAGAGAAACCTCATATAATC+TGG 0.393799 5.3:-58060148 None:intergenic
TGCTTGGAAAGATATGAATA+AGG 0.403555 5.3:+58061525 MS.gene009763:CDS
ATTGAAGCCCTTACTTGAAA+AGG 0.407415 5.3:-58059476 None:intergenic
ATCTCCCATACCAATGAAAC+TGG 0.408248 5.3:-58061011 None:intergenic
AACTGACCTTTCAATTGCCT+TGG 0.409013 5.3:-58059796 None:intergenic
ATATGAATAAGGAATGTCTT+AGG 0.416799 5.3:+58061536 MS.gene009763:CDS
ATTGATTCAATATGTCGTTT+GGG 0.419389 5.3:+58058143 MS.gene009763:CDS
ATATGGAACAATTGATGAAT+TGG 0.422048 5.3:+58059764 MS.gene009763:CDS
ATTCATATCTTTCCAAGCAT+TGG 0.425457 5.3:-58061521 None:intergenic
TACAAATCAAACATAGCTTA+AGG 0.428318 5.3:+58059304 MS.gene009763:CDS
AGAATCATTGTTGATGTTGA+GGG 0.433181 5.3:+58059156 MS.gene009763:CDS
CAGGTGGGATATTAGCTGCT+TGG 0.434230 5.3:+58060117 MS.gene009763:intron
AGTGTACATCAAAAGGAATT+CGG 0.435236 5.3:+58059450 MS.gene009763:CDS
ATGATCTTCCAGATTATATG+AGG 0.441464 5.3:+58060140 MS.gene009763:CDS
GATGATGCTTATGATGCATA+TGG 0.449013 5.3:+58059747 MS.gene009763:CDS
GCTACAAAGTGTACATCAAA+AGG 0.460784 5.3:+58059443 MS.gene009763:CDS
ATGCTGCTATTGTTATTGGC+AGG 0.467879 5.3:+58061086 MS.gene009763:CDS
TGAAGAAGTATAATGTCTCT+AGG 0.468938 5.3:+58061464 MS.gene009763:CDS
GAAAGAGGATTGCCAATGCT+TGG 0.482714 5.3:+58061509 MS.gene009763:CDS
AACCACATGTTTCTGTTGAT+AGG 0.487293 5.3:-58060970 None:intergenic
AAGAATCATTGTTGATGTTG+AGG 0.489802 5.3:+58059155 MS.gene009763:CDS
GGCTTTCACTACCACTCACC+TGG 0.492597 5.3:+58059245 MS.gene009763:CDS
TAAATGTACTCTTCTAGTGT+TGG 0.494299 5.3:-58060947 None:intergenic
TGGTCTTTGTAGATGGTGGA+AGG 0.494732 5.3:+58059581 MS.gene009763:intron
TTTAAAATACGTGTAAGAAA+AGG 0.501278 5.3:-58061577 None:intergenic
AACTACCGTTTGCAAGAGAT+AGG 0.502401 5.3:+58059622 MS.gene009763:CDS
TGTACCAGTTTCATTGGTAT+GGG 0.504466 5.3:+58061007 MS.gene009763:CDS
AGATGTATTCAACAAGTTCA+AGG 0.504545 5.3:+58059110 MS.gene009763:intron
CTGTGCTGTTTAGGTTGTTG+AGG 0.515096 5.3:+58058276 MS.gene009763:CDS
TAGCTTCGTGCTTCCAACCT+AGG 0.524040 5.3:-58059348 None:intergenic
GCACAAGAACTTGCCTAGGT+TGG 0.524401 5.3:+58059335 MS.gene009763:CDS
AAAGGCATTGGAATTTCCGT+TGG 0.525158 5.3:-58061559 None:intergenic
TTTGAGCCTCAATATTCTAT+CGG 0.528157 5.3:+58059681 MS.gene009763:CDS
GTTAATGCTCAAACCACCAC+TGG 0.539456 5.3:-58061697 None:intergenic
CATATAGCATTCCAAGAATG+AGG 0.542840 5.3:-58061443 None:intergenic
TTTCTTCCGATAGAATATTG+AGG 0.547728 5.3:-58059687 None:intergenic
TCGAGGATGGCTCAATTCGT+TGG 0.550555 5.3:-58059277 None:intergenic
CAATTCAAGAAGGTAGAAAG+AGG 0.552196 5.3:+58061494 MS.gene009763:CDS
GAAGAAGTATAATGTCTCTA+GGG 0.552743 5.3:+58061465 MS.gene009763:CDS
AAATAATCTCCCCAAACGCT+AGG 0.554023 5.3:-58057559 None:intergenic
ATTCGTTGGCAACAAAGTCC+AGG 0.554062 5.3:-58059263 None:intergenic
AATCAAACATAGCTTAAGGC+AGG 0.559535 5.3:+58059308 MS.gene009763:CDS
TGATTTGTATTGCTCGAGGA+TGG 0.559718 5.3:-58059290 None:intergenic
AGCTTTGCTTGTAGATCCAG+TGG 0.559785 5.3:+58061681 MS.gene009763:CDS
TGCATCATAAGCATCATCAA+TGG 0.560407 5.3:-58059742 None:intergenic
ACCATCCTATCTCTTGCAAA+CGG 0.560578 5.3:-58059627 None:intergenic
CTTATATGATCGAGGCCAGA+TGG 0.563295 5.3:+58060906 MS.gene009763:CDS
TTTAGGTTGTTGAGGCAACA+AGG 0.565345 5.3:+58058284 MS.gene009763:CDS
GCTACACATCTCATGGTTCG+TGG 0.570317 5.3:+58059198 MS.gene009763:CDS
GAGCAGGAAATGCAGAAAAG+TGG 0.572850 5.3:+58060202 MS.gene009763:CDS
GCAAGAGATAGGATGGTGGA+AGG 0.575096 5.3:+58059633 MS.gene009763:CDS
ATACGTGTAAGAAAAGGCAT+TGG 0.580790 5.3:-58061571 None:intergenic
TCTTTACGAAGAAATGGAGC+AGG 0.582100 5.3:+58060186 MS.gene009763:CDS
ACATCTCATGGTTCGTGGAG+AGG 0.586076 5.3:+58059203 MS.gene009763:CDS
CTCTGCACAAGAACTTGCCT+AGG 0.587607 5.3:+58059331 MS.gene009763:CDS
GATTATAAACCTAGCGTTTG+GGG 0.587642 5.3:+58057550 MS.gene009763:CDS
ACCGTTTGCAAGAGATAGGA+TGG 0.587976 5.3:+58059626 MS.gene009763:CDS
ACAGCACAGCAAGAGAGCAA+AGG 0.589681 5.3:-58058262 None:intergenic
TTTGCTTGTAGATCCAGTGG+TGG 0.594264 5.3:+58061684 MS.gene009763:CDS
GTATGAAGCTACACATCTCA+TGG 0.601260 5.3:+58059191 MS.gene009763:CDS
TAAGGAATGTCTTAGGCCAA+CGG 0.603804 5.3:+58061543 MS.gene009763:CDS
AACAAGTTCAAGGATGAGCA+AGG 0.607713 5.3:+58059120 MS.gene009763:CDS
AGGGAAGCTTCAATTCAAGA+AGG 0.608492 5.3:+58061484 MS.gene009763:CDS
CTACATTTCCATATACGAGA+AGG 0.608694 5.3:+58059368 MS.gene009763:CDS
GATAACTACACGAATCCTGA+AGG 0.616579 5.3:+58061637 MS.gene009763:CDS
TGTTTGATTTGTATTGCTCG+AGG 0.621083 5.3:-58059294 None:intergenic
GGCAACAAAGTCCAGGTGAG+TGG 0.625375 5.3:-58059256 None:intergenic
CATTCAAGCTTATATGATCG+AGG 0.626588 5.3:+58060898 MS.gene009763:CDS
TAGATTCTGAAGCATATCGA+AGG 0.635933 5.3:-58057582 None:intergenic
CACAGAGGAGATCATCAAGT+GGG 0.651847 5.3:+58061039 MS.gene009763:CDS
GAATCATTGTTGATGTTGAG+GGG 0.658359 5.3:+58059157 MS.gene009763:CDS
ACACATCAATAACACGTGAG+AGG 0.662071 5.3:-58061600 None:intergenic
GGATGATATTGCGTCCAATG+AGG 0.668064 5.3:+58061114 MS.gene009763:CDS
TACCTATCAACAGAAACATG+TGG 0.672798 5.3:+58060968 MS.gene009763:CDS
GTGAGTGGTAGTGAAAGCCA+AGG 0.686505 5.3:-58059241 None:intergenic
CCACTTGATGATCTCCTCTG+TGG 0.690711 5.3:-58061038 None:intergenic
CCACAGAGGAGATCATCAAG+TGG 0.692314 5.3:+58061038 MS.gene009763:CDS
GTTTGCAAGAGATAGGATGG+TGG 0.725981 5.3:+58059629 MS.gene009763:CDS
TATGGGAGATATAACCACAG+AGG 0.782309 5.3:+58061024 MS.gene009763:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTACTTATAATTAATTG+TGG + chr5.3:58060858-58060877 MS.gene009763:intron 10.0%
!! AACATTTATAGATTTATATA+TGG + chr5.3:58057614-58057633 MS.gene009763:intron 10.0%
!! AAGAAAATTATTATCATAAA+AGG + chr5.3:58061228-58061247 MS.gene009763:intron 10.0%
!! ATTTAAACGTATATATAATA+TGG + chr5.3:58058623-58058642 MS.gene009763:intron 10.0%
!! TTATTCAAATTTAAGAAAAA+TGG - chr5.3:58058681-58058700 None:intergenic 10.0%
!!! AAGTAATTTTCTTTATATTT+TGG - chr5.3:58060847-58060866 None:intergenic 10.0%
!!! CAAATTAAATTTTAATCTAT+TGG + chr5.3:58057809-58057828 MS.gene009763:intron 10.0%
!!! GTTAGAATTTAATTTTTTTA+GGG - chr5.3:58060811-58060830 None:intergenic 10.0%
!!! TGTTAGAATTTAATTTTTTT+AGG - chr5.3:58060812-58060831 None:intergenic 10.0%
!!! TTTAAAATTCTATTTTTTTG+TGG - chr5.3:58060453-58060472 None:intergenic 10.0%
!! AAACAAAAATAATAATGAGA+AGG - chr5.3:58059560-58059579 None:intergenic 15.0%
!! ATGAAGAAAAAAAAACTAAA+TGG + chr5.3:58060661-58060680 MS.gene009763:intron 15.0%
!! ATTTAAGAAAAATGGTAATA+AGG - chr5.3:58058673-58058692 None:intergenic 15.0%
!! CATTAAGAAAATATAGATAA+AGG - chr5.3:58058819-58058838 None:intergenic 15.0%
!! TAATTGCTATATCTATAATT+GGG + chr5.3:58058499-58058518 MS.gene009763:intron 15.0%
!! TTAATAGTAGAAATAATCAA+AGG + chr5.3:58058861-58058880 MS.gene009763:intron 15.0%
!! TTAATTGCTATATCTATAAT+TGG + chr5.3:58058498-58058517 MS.gene009763:intron 15.0%
!! TTCAAGAAAAATACATATAT+AGG - chr5.3:58058936-58058955 None:intergenic 15.0%
!! TTTACATTGAATTAAAACAA+GGG - chr5.3:58061366-58061385 None:intergenic 15.0%
!!! ATTTTATATTTATACCTCAT+TGG - chr5.3:58061131-58061150 None:intergenic 15.0%
!!! CTCATTATTATTTTTGTTTT+TGG + chr5.3:58059561-58059580 MS.gene009763:intron 15.0%
!!! GAAATTTCATTTTTTTAACT+GGG - chr5.3:58060591-58060610 None:intergenic 15.0%
!!! TAATGAAAACTTACTTATTT+TGG + chr5.3:58059401-58059420 MS.gene009763:CDS 15.0%
!!! TGAAATTTCATTTTTTTAAC+TGG - chr5.3:58060592-58060611 None:intergenic 15.0%
!!! TTAATTTTTTTTCCTAGTTA+TGG - chr5.3:58059512-58059531 None:intergenic 15.0%
!! ATAATTATTGTTTAACCATC+TGG - chr5.3:58060924-58060943 None:intergenic 20.0%
!! ATGGACTTGAAAAATATTAA+AGG + chr5.3:58058642-58058661 MS.gene009763:intron 20.0%
!! CATAAGAATTATGTTGAAAA+TGG + chr5.3:58058215-58058234 MS.gene009763:CDS 20.0%
!! GTTTACATTGAATTAAAACA+AGG - chr5.3:58061367-58061386 None:intergenic 20.0%
!! TGGTGATAATAAATAAATTG+AGG - chr5.3:58057978-58057997 None:intergenic 20.0%
!! TTACTTATAATTAATTGTGG+TGG + chr5.3:58060861-58060880 MS.gene009763:intron 20.0%
!!! AAAATTCTATTTTTTTGTGG+TGG - chr5.3:58060450-58060469 None:intergenic 20.0%
!!! GTCTTACTTTTATATGTTTA+TGG - chr5.3:58057705-58057724 None:intergenic 20.0%
!!! TATAAATGAAAGTGATTTTC+AGG + chr5.3:58060098-58060117 MS.gene009763:intron 20.0%
!!! TCTTGTTAACTAGTTATTTT+CGG + chr5.3:58059840-58059859 MS.gene009763:intron 20.0%
!!! TGTTACTTCTTATTAATTGT+TGG - chr5.3:58057761-58057780 None:intergenic 20.0%
!!! TTTAAAATACGTGTAAGAAA+AGG - chr5.3:58061580-58061599 None:intergenic 20.0%
! AAACACTAAAAAACAATGTG+AGG + chr5.3:58058072-58058091 MS.gene009763:CDS 25.0%
! AACACTAAAAAACAATGTGA+GGG + chr5.3:58058073-58058092 MS.gene009763:CDS 25.0%
! AAGGGATATAATACTAGTTA+AGG - chr5.3:58060070-58060089 None:intergenic 25.0%
! ATATGAATAAGGAATGTCTT+AGG + chr5.3:58061536-58061555 MS.gene009763:CDS 25.0%
! ATATGGAACAATTGATGAAT+TGG + chr5.3:58059764-58059783 MS.gene009763:CDS 25.0%
! GAATTATTATGTTCATCGAA+AGG + chr5.3:58059003-58059022 MS.gene009763:intron 25.0%
! GACAATGTATAATATATGCA+AGG + chr5.3:58060405-58060424 MS.gene009763:intron 25.0%
! TACAAATCAAACATAGCTTA+AGG + chr5.3:58059304-58059323 MS.gene009763:CDS 25.0%
! TACCCTAAAATTATTTCCTA+TGG - chr5.3:58058469-58058488 None:intergenic 25.0%
! TACGAGTTAAATAGAATTTG+TGG - chr5.3:58060739-58060758 None:intergenic 25.0%
! TATAATATATGCAAGGTATG+AGG + chr5.3:58060412-58060431 MS.gene009763:intron 25.0%
! TTTAGCACATCATTTATACA+GGG + chr5.3:58059817-58059836 MS.gene009763:intron 25.0%
!! AAATCACTCTTACAATCTTT+TGG - chr5.3:58058576-58058595 None:intergenic 25.0%
!! AACTCTTTTAAATAATCCGT+AGG - chr5.3:58058842-58058861 None:intergenic 25.0%
!! AATCAGTGTAAATAAGTTGA+TGG - chr5.3:58058332-58058351 None:intergenic 25.0%
!! AATTGATTCAATATGTCGTT+TGG + chr5.3:58058142-58058161 MS.gene009763:CDS 25.0%
!! ATTGATTCAATATGTCGTTT+GGG + chr5.3:58058143-58058162 MS.gene009763:CDS 25.0%
!! ATTTATTATCACCACTCTTT+TGG + chr5.3:58057984-58058003 MS.gene009763:intron 25.0%
!! ATTTTTGTCTTTTGTCATGA+TGG - chr5.3:58058978-58058997 None:intergenic 25.0%
!! CACCATAGGAAATAATTTTA+GGG + chr5.3:58058464-58058483 MS.gene009763:intron 25.0%
!! CTATATTTTCTTAATGCCTA+CGG + chr5.3:58058823-58058842 MS.gene009763:intron 25.0%
!! TCACCATAGGAAATAATTTT+AGG + chr5.3:58058463-58058482 MS.gene009763:intron 25.0%
!!! AATTAAGTGCACTTTTTCTA+AGG - chr5.3:58058126-58058145 None:intergenic 25.0%
!!! ATTAAGTGCACTTTTTCTAA+GGG - chr5.3:58058125-58058144 None:intergenic 25.0%
!!! CTTCAATGTCTTTGTTTTAA+GGG + chr5.3:58061162-58061181 MS.gene009763:intron 25.0%
!!! CTTGTTAACTAGTTATTTTC+GGG + chr5.3:58059841-58059860 MS.gene009763:intron 25.0%
!!! GTGTTTTTTTTTAGTAAACC+AGG - chr5.3:58059089-58059108 None:intergenic 25.0%
!!! TCTTCAATGTCTTTGTTTTA+AGG + chr5.3:58061161-58061180 MS.gene009763:intron 25.0%
!!! TTTTGAAAATGAGATTGAAG+AGG + chr5.3:58058178-58058197 MS.gene009763:CDS 25.0%
AAAACAAGGGAAATGCTAAT+CGG - chr5.3:58061353-58061372 None:intergenic 30.0%
AAACTCTTAGAGATCGATAT+AGG - chr5.3:58059057-58059076 None:intergenic 30.0%
AAGAATCATTGTTGATGTTG+AGG + chr5.3:58059155-58059174 MS.gene009763:CDS 30.0%
ACATAAGATTACTTGAAGAC+TGG - chr5.3:58058365-58058384 None:intergenic 30.0%
ACGATTCTTCAAAAGTAGTA+AGG - chr5.3:58057727-58057746 None:intergenic 30.0%
AGAATCATTGTTGATGTTGA+GGG + chr5.3:58059156-58059175 MS.gene009763:CDS 30.0%
AGATGTATTCAACAAGTTCA+AGG + chr5.3:58059110-58059129 MS.gene009763:intron 30.0%
AGATTATAAACCTAGCGTTT+GGG + chr5.3:58057549-58057568 MS.gene009763:CDS 30.0%
AGTGTACATCAAAAGGAATT+CGG + chr5.3:58059450-58059469 MS.gene009763:CDS 30.0%
ATCTAATCAAATCTCACCAT+AGG + chr5.3:58058450-58058469 MS.gene009763:intron 30.0%
ATGATCTTCCAGATTATATG+AGG + chr5.3:58060140-58060159 MS.gene009763:CDS 30.0%
ATTCATATCTTTCCAAGCAT+TGG - chr5.3:58061524-58061543 None:intergenic 30.0%
ATTTCTATGCAAGTCAGATT+TGG - chr5.3:58057524-58057543 None:intergenic 30.0%
CATTTCTTCGTAAAGATCTA+AGG - chr5.3:58060182-58060201 None:intergenic 30.0%
CTTAGATCTTTACGAAGAAA+TGG + chr5.3:58060180-58060199 MS.gene009763:CDS 30.0%
GTTAATGCTGCTATTGTTAT+TGG + chr5.3:58061082-58061101 MS.gene009763:CDS 30.0%
GTTTAGCACATCATTTATAC+AGG + chr5.3:58059816-58059835 MS.gene009763:intron 30.0%
TAAATGTACTCTTCTAGTGT+TGG - chr5.3:58060950-58060969 None:intergenic 30.0%
TAGAGAAACCTCATATAATC+TGG - chr5.3:58060151-58060170 None:intergenic 30.0%
TGCTTGGAAAGATATGAATA+AGG + chr5.3:58061525-58061544 MS.gene009763:CDS 30.0%
TTGATATGTACCAGTTTCAT+TGG + chr5.3:58061001-58061020 MS.gene009763:CDS 30.0%
TTTCTATGCAAGTCAGATTT+GGG - chr5.3:58057523-58057542 None:intergenic 30.0%
TTTCTTCCGATAGAATATTG+AGG - chr5.3:58059690-58059709 None:intergenic 30.0%
TTTGAGCCTCAATATTCTAT+CGG + chr5.3:58059681-58059700 MS.gene009763:CDS 30.0%
! AATGTTTTCATTTCTCCTTC+AGG - chr5.3:58061655-58061674 None:intergenic 30.0%
! AGTAAGTTTTCATTATGCGA+AGG - chr5.3:58059396-58059415 None:intergenic 30.0%
! GAAGAAGTATAATGTCTCTA+GGG + chr5.3:58061465-58061484 MS.gene009763:CDS 30.0%
! TAAGAGTTTGTTCAATATCC+TGG + chr5.3:58059068-58059087 MS.gene009763:intron 30.0%
! TATTGTTATTGGCAGGATAA+TGG + chr5.3:58061093-58061112 MS.gene009763:CDS 30.0%
! TGAAGAAGTATAATGTCTCT+AGG + chr5.3:58061464-58061483 MS.gene009763:CDS 30.0%
! TGAATTGGAACTTTTTACCA+AGG + chr5.3:58059779-58059798 MS.gene009763:CDS 30.0%
! TTTTTACCAAGGCAATTGAA+AGG + chr5.3:58059790-58059809 MS.gene009763:CDS 30.0%
!! AAATAAGTTGATGGCATACT+TGG - chr5.3:58058323-58058342 None:intergenic 30.0%
!! AAATGAAAGTGATTTTCAGG+TGG + chr5.3:58060101-58060120 MS.gene009763:intron 30.0%
!! TATCTTTGCAACTTTTTGAG+AGG + chr5.3:58058772-58058791 MS.gene009763:intron 30.0%
!!! AATGAAAGTGATTTTCAGGT+GGG + chr5.3:58060102-58060121 MS.gene009763:intron 30.0%
!!! ATTTTTTTTTTCCTAGCCAC+CGG - chr5.3:58060624-58060643 None:intergenic 30.0%
!!! TCTATTTTTTTGTGGTGGTT+GGG - chr5.3:58060445-58060464 None:intergenic 30.0%
!!! TTCTATTTTTTTGTGGTGGT+TGG - chr5.3:58060446-58060465 None:intergenic 30.0%
!!! TTGTTTTTGGTCTTTGTAGA+TGG + chr5.3:58059574-58059593 MS.gene009763:intron 30.0%
AATCAAACATAGCTTAAGGC+AGG + chr5.3:58059308-58059327 MS.gene009763:CDS 35.0%
AATCAAAGGAAGCTTAGTAG+AGG + chr5.3:58058875-58058894 MS.gene009763:intron 35.0%
AGAACATATGTCCTCATTCT+TGG + chr5.3:58061432-58061451 MS.gene009763:CDS 35.0%
ATCATACGTACACCATAACT+AGG + chr5.3:58059497-58059516 MS.gene009763:intron 35.0%
ATGTACCAGTTTCATTGGTA+TGG + chr5.3:58061006-58061025 MS.gene009763:CDS 35.0%
ATTGAAGCCCTTACTTGAAA+AGG - chr5.3:58059479-58059498 None:intergenic 35.0%
CAGATTATAAACCTAGCGTT+TGG + chr5.3:58057548-58057567 MS.gene009763:CDS 35.0%
CATATAGCATTCCAAGAATG+AGG - chr5.3:58061446-58061465 None:intergenic 35.0%
CATCAATATCCAAGTTCTAC+GGG - chr5.3:58060708-58060727 None:intergenic 35.0%
CATTCAAGCTTATATGATCG+AGG + chr5.3:58060898-58060917 MS.gene009763:CDS 35.0%
CCATCAATATCCAAGTTCTA+CGG - chr5.3:58060709-58060728 None:intergenic 35.0%
CTACATTTCCATATACGAGA+AGG + chr5.3:58059368-58059387 MS.gene009763:CDS 35.0%
GAATCATTGTTGATGTTGAG+GGG + chr5.3:58059157-58059176 MS.gene009763:CDS 35.0%
GATGATGCTTATGATGCATA+TGG + chr5.3:58059747-58059766 MS.gene009763:CDS 35.0%
GATTATAAACCTAGCGTTTG+GGG + chr5.3:58057550-58057569 MS.gene009763:CDS 35.0%
GCTACAAAGTGTACATCAAA+AGG + chr5.3:58059443-58059462 MS.gene009763:CDS 35.0%
GCTACTACAAAAAAGCAGTA+TGG + chr5.3:58060242-58060261 MS.gene009763:intron 35.0%
TAACCAAGTAACCAAAAGAG+TGG - chr5.3:58057998-58058017 None:intergenic 35.0%
TACCTATCAACAGAAACATG+TGG + chr5.3:58060968-58060987 MS.gene009763:CDS 35.0%
TCGATATGCTTCAGAATCTA+TGG + chr5.3:58057585-58057604 MS.gene009763:CDS 35.0%
TCTTGAACGAAGACCATAAT+TGG + chr5.3:58058949-58058968 MS.gene009763:intron 35.0%
TGAAATTTCATCAAGTAGCC+CGG + chr5.3:58060602-58060621 MS.gene009763:intron 35.0%
TGCATCATAAGCATCATCAA+TGG - chr5.3:58059745-58059764 None:intergenic 35.0%
TGGTTCAATATTTGCATGCA+TGG - chr5.3:58057685-58057704 None:intergenic 35.0%
TGTACCAGTTTCATTGGTAT+GGG + chr5.3:58061007-58061026 MS.gene009763:CDS 35.0%
! AACCACATGTTTCTGTTGAT+AGG - chr5.3:58060973-58060992 None:intergenic 35.0%
! AGAGTTTAACTCAGTTGGTA+TGG + chr5.3:58060383-58060402 MS.gene009763:intron 35.0%
! ATACGTGTAAGAAAAGGCAT+TGG - chr5.3:58061574-58061593 None:intergenic 35.0%
! TTTGTCTTTTGTCATGATGG+AGG - chr5.3:58058975-58058994 None:intergenic 35.0%
!! TAGATTCTGAAGCATATCGA+AGG - chr5.3:58057585-58057604 None:intergenic 35.0%
!! TGTTTGATTTGTATTGCTCG+AGG - chr5.3:58059297-58059316 None:intergenic 35.0%
!! TTTTTGGTCTTTGTAGATGG+TGG + chr5.3:58059577-58059596 MS.gene009763:intron 35.0%
!!! TTTTTTTTTTCCTAGCCACC+GGG - chr5.3:58060623-58060642 None:intergenic 35.0%
AAATAATCTCCCCAAACGCT+AGG - chr5.3:58057562-58057581 None:intergenic 40.0%
AACAAGTTCAAGGATGAGCA+AGG + chr5.3:58059120-58059139 MS.gene009763:CDS 40.0%
AACTACCGTTTGCAAGAGAT+AGG + chr5.3:58059622-58059641 MS.gene009763:CDS 40.0%
AACTGACCTTTCAATTGCCT+TGG - chr5.3:58059799-58059818 None:intergenic 40.0%
ACACATCAATAACACGTGAG+AGG - chr5.3:58061603-58061622 None:intergenic 40.0%
ACCATCCTATCTCTTGCAAA+CGG - chr5.3:58059630-58059649 None:intergenic 40.0%
AGGGAAGCTTCAATTCAAGA+AGG + chr5.3:58061484-58061503 MS.gene009763:CDS 40.0%
ATCTCCCATACCAATGAAAC+TGG - chr5.3:58061014-58061033 None:intergenic 40.0%
CCGTAGAACTTGGATATTGA+TGG + chr5.3:58060706-58060725 MS.gene009763:intron 40.0%
CTCTTTGTTCAACACTTTGC+AGG + chr5.3:58058019-58058038 MS.gene009763:intron 40.0%
GATAACTACACGAATCCTGA+AGG + chr5.3:58061637-58061656 MS.gene009763:CDS 40.0%
GTATGAAGCTACACATCTCA+TGG + chr5.3:58059191-58059210 MS.gene009763:CDS 40.0%
TAAGGAATGTCTTAGGCCAA+CGG + chr5.3:58061543-58061562 MS.gene009763:CDS 40.0%
TATGGGAGATATAACCACAG+AGG + chr5.3:58061024-58061043 MS.gene009763:CDS 40.0%
TCTTTACGAAGAAATGGAGC+AGG + chr5.3:58060186-58060205 MS.gene009763:CDS 40.0%
TTGTATGCTTAACGAGTGCA+CGG - chr5.3:58061205-58061224 None:intergenic 40.0%
! ATGCTGCTATTGTTATTGGC+AGG + chr5.3:58061086-58061105 MS.gene009763:CDS 40.0%
! TGATTTGTATTGCTCGAGGA+TGG - chr5.3:58059293-58059312 None:intergenic 40.0%
!! AAAGGCATTGGAATTTCCGT+TGG - chr5.3:58061562-58061581 None:intergenic 40.0%
!! AAGGTAGTTTTTGGGCTATG+GGG + chr5.3:58059652-58059671 MS.gene009763:CDS 40.0%
!! GAAGGTAGTTTTTGGGCTAT+GGG + chr5.3:58059651-58059670 MS.gene009763:CDS 40.0%
!! GGATATTTTGGAAGATGCCT+TGG + chr5.3:58059224-58059243 MS.gene009763:CDS 40.0%
!! TCACCACTCTTTTGGTTACT+TGG + chr5.3:58057992-58058011 MS.gene009763:intron 40.0%
!! TCGTTGTTCAAGTTGTGTTG+AGG - chr5.3:58057947-58057966 None:intergenic 40.0%
!! TTGTAGATGGTGGAAGGAAT+TGG + chr5.3:58059587-58059606 MS.gene009763:intron 40.0%
!! TTTAGGTTGTTGAGGCAACA+AGG + chr5.3:58058284-58058303 MS.gene009763:CDS 40.0%
!!! GATGGTGGAAGGTAGTTTTT+GGG + chr5.3:58059644-58059663 MS.gene009763:CDS 40.0%
!!! GTTTTAAGGGTCATGCTAAC+CGG + chr5.3:58061175-58061194 MS.gene009763:intron 40.0%
!!! TCGGCAACCTTTTCAAGTAA+GGG + chr5.3:58059469-58059488 MS.gene009763:intron 40.0%
!!! TTCGGCAACCTTTTCAAGTA+AGG + chr5.3:58059468-58059487 MS.gene009763:intron 40.0%
AATTTCATCAAGTAGCCCGG+TGG + chr5.3:58060605-58060624 MS.gene009763:intron 45.0%
ACCGTTTGCAAGAGATAGGA+TGG + chr5.3:58059626-58059645 MS.gene009763:CDS 45.0%
AGCTTTGCTTGTAGATCCAG+TGG + chr5.3:58061681-58061700 MS.gene009763:CDS 45.0%
ATTCGTTGGCAACAAAGTCC+AGG - chr5.3:58059266-58059285 None:intergenic 45.0%
CACAGAGGAGATCATCAAGT+GGG + chr5.3:58061039-58061058 MS.gene009763:CDS 45.0%
CCAACTGAGTTAAACTCTCG+AGG - chr5.3:58060381-58060400 None:intergenic 45.0%
CCTCGAGAGTTTAACTCAGT+TGG + chr5.3:58060378-58060397 MS.gene009763:intron 45.0%
CGAAGGATCCTTCTCGTATA+TGG - chr5.3:58059379-58059398 None:intergenic 45.0%
CTTATATGATCGAGGCCAGA+TGG + chr5.3:58060906-58060925 MS.gene009763:CDS 45.0%
GAGCAGGAAATGCAGAAAAG+TGG + chr5.3:58060202-58060221 MS.gene009763:CDS 45.0%
GGATGATATTGCGTCCAATG+AGG + chr5.3:58061114-58061133 MS.gene009763:CDS 45.0%
GTTTGCAAGAGATAGGATGG+TGG + chr5.3:58059629-58059648 MS.gene009763:CDS 45.0%
TAGATCCAGTGGTGGTTTGA+AGG + chr5.3:58061692-58061711 MS.gene009763:CDS 45.0%
TGTATGCTTAACGAGTGCAC+GGG - chr5.3:58061204-58061223 None:intergenic 45.0%
TTTGCTTGTAGATCCAGTGG+TGG + chr5.3:58061684-58061703 MS.gene009763:CDS 45.0%
! GGTTCGTGGAGAGGATATTT+TGG + chr5.3:58059212-58059231 MS.gene009763:CDS 45.0%
! GTCATGATGGAGGCCAATTA+TGG - chr5.3:58058965-58058984 None:intergenic 45.0%
!! ATCCAAGTTCTACGGGTTAG+CGG - chr5.3:58060701-58060720 None:intergenic 45.0%
!! CTGTGCTGTTTAGGTTGTTG+AGG + chr5.3:58058276-58058295 MS.gene009763:CDS 45.0%
!! GGAAGGTAGTTTTTGGGCTA+TGG + chr5.3:58059650-58059669 MS.gene009763:CDS 45.0%
!! TGGTCTTTGTAGATGGTGGA+AGG + chr5.3:58059581-58059600 MS.gene009763:intron 45.0%
!!! GGATGGTGGAAGGTAGTTTT+TGG + chr5.3:58059643-58059662 MS.gene009763:CDS 45.0%
!! ATTTATGTAATAAAATTTAT+TGG - chr5.3:58059935-58059954 None:intergenic 5.0%
!! TTCATTTATATTTATATAAA+GGG - chr5.3:58060088-58060107 None:intergenic 5.0%
!! TTTCATTTATATTTATATAA+AGG - chr5.3:58060089-58060108 None:intergenic 5.0%
!!! ATAGTATATTTTATTAAAAA+TGG + chr5.3:58058741-58058760 MS.gene009763:intron 5.0%
ACAGCACAGCAAGAGAGCAA+AGG - chr5.3:58058265-58058284 None:intergenic 50.0%
ACATCTCATGGTTCGTGGAG+AGG + chr5.3:58059203-58059222 MS.gene009763:CDS 50.0%
ATGCTTAACCAGTGCTCCAG+AGG + chr5.3:58061325-58061344 MS.gene009763:intron 50.0%
CAGGTGGGATATTAGCTGCT+TGG + chr5.3:58060117-58060136 MS.gene009763:intron 50.0%
CCACAGAGGAGATCATCAAG+TGG + chr5.3:58061038-58061057 MS.gene009763:CDS 50.0%
CTCTGCACAAGAACTTGCCT+AGG + chr5.3:58059331-58059350 MS.gene009763:CDS 50.0%
GCACAAGAACTTGCCTAGGT+TGG + chr5.3:58059335-58059354 MS.gene009763:CDS 50.0%
GCTACACATCTCATGGTTCG+TGG + chr5.3:58059198-58059217 MS.gene009763:CDS 50.0%
GTATGCTTAACGAGTGCACG+GGG - chr5.3:58061203-58061222 None:intergenic 50.0%
TACCGCTAACCCGTAGAACT+TGG + chr5.3:58060696-58060715 MS.gene009763:intron 50.0%
TAGCTTCGTGCTTCCAACCT+AGG - chr5.3:58059351-58059370 None:intergenic 50.0%
TCGAGGATGGCTCAATTCGT+TGG - chr5.3:58059280-58059299 None:intergenic 50.0%
! CCACTTGATGATCTCCTCTG+TGG - chr5.3:58061041-58061060 None:intergenic 50.0%
! GAAATGCTAATCGGTGCCTC+TGG - chr5.3:58061344-58061363 None:intergenic 50.0%
! GTGAGTGGTAGTGAAAGCCA+AGG - chr5.3:58059244-58059263 None:intergenic 50.0%
!! GCAAGAGATAGGATGGTGGA+AGG + chr5.3:58059633-58059652 MS.gene009763:CDS 50.0%
!! GCTCTCTTGCTGTGCTGTTT+AGG + chr5.3:58058267-58058286 MS.gene009763:CDS 50.0%
GGCAACAAAGTCCAGGTGAG+TGG - chr5.3:58059259-58059278 None:intergenic 55.0%
GGCTTTCACTACCACTCACC+TGG + chr5.3:58059245-58059264 MS.gene009763:CDS 55.0%
CATCAAGTAGCCCGGTGGCT+AGG + chr5.3:58060610-58060629 MS.gene009763:intron 60.0%
TTAACGAGTGCACGGGGCAC+CGG - chr5.3:58061197-58061216 None:intergenic 60.0%
!! AATCGGTGCCTCTGGAGCAC+TGG - chr5.3:58061336-58061355 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 58057514 58061711 58057514 ID=MS.gene009763
chr5.3 mRNA 58057514 58061711 58057514 ID=MS.gene009763.t1;Parent=MS.gene009763
chr5.3 exon 58057514 58057606 58057514 ID=MS.gene009763.t1.exon1;Parent=MS.gene009763.t1
chr5.3 CDS 58057514 58057606 58057514 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58058041 58058323 58058041 ID=MS.gene009763.t1.exon2;Parent=MS.gene009763.t1
chr5.3 CDS 58058041 58058323 58058041 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58059112 58059484 58059112 ID=MS.gene009763.t1.exon3;Parent=MS.gene009763.t1
chr5.3 CDS 58059112 58059484 58059112 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58059593 58059811 58059593 ID=MS.gene009763.t1.exon4;Parent=MS.gene009763.t1
chr5.3 CDS 58059593 58059811 58059593 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58060120 58060258 58060120 ID=MS.gene009763.t1.exon5;Parent=MS.gene009763.t1
chr5.3 CDS 58060120 58060258 58060120 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58060887 58061135 58060887 ID=MS.gene009763.t1.exon6;Parent=MS.gene009763.t1
chr5.3 CDS 58060887 58061135 58060887 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
chr5.3 exon 58061418 58061711 58061418 ID=MS.gene009763.t1.exon7;Parent=MS.gene009763.t1
chr5.3 CDS 58061418 58061711 58061418 ID=cds.MS.gene009763.t1;Parent=MS.gene009763.t1
Gene Sequence

>MS.gene009763

ATGGCTCCCAAATCTGACTTGCATAGAAATGTTGCAGATTATAAACCTAGCGTTTGGGGAGATTATTTCCTTCGATATGCTTCAGAATCTATGGTACGTAAACATTTATAGATTTATATATGGTACACAAATATATTTCTATTTTGCGTGCATTTTATTATGTTTTGACCATGCATGCAAATATTGAACCATAAACATATAAAAGTAAGACCTTACTACTTTTGAAGAATCGTTGATAATTTATCCAACAATTAATAAGAAGTAACAACATGAGTAAATTTGTAAGTGACACTTACAAATTAAATTTTAATCTATTGGTTGTTGAGTAAATTATACACAATTCTTCTTGATATAAATAAGTTGATCAATCAACTTTTTACTTATATTTCGTATAAAAAATAAAAAATAACTATTCATTTATGCTTATGCACCTCAACACAACTTGAACAACGATTAGCACACCTCAATTTATTTATTATCACCACTCTTTTGGTTACTTGGTTAACTCTTTGTTCAACACTTTGCAGGAAGTTGATCAAAGTATTGAAGCACAAATTGAAACACTAAAAAACAATGTGAGGGACATGCTTGTCTCAAAGACTGAGAATCCCTTAGAAAAAGTGCACTTAATTGATTCAATATGTCGTTTGGGTGTGAGCTATCATTTTGAAAATGAGATTGAAGAGGTTTTGCAACATATTCATAAGAATTATGTTGAAAATGGAGAATTAACTATTTTTGAAGACAACCTTTGCTCTCTTGCTGTGCTGTTTAGGTTGTTGAGGCAACAAGGACTTCATGTTTCACCAAGTATGCCATCAACTTATTTACACTGATTTCTCTTTATACCAGTCTTCAAGTAATCTTATGTTTAATACAATTATTAGAAAAAAATTATCAGATGCATTGATATATTGTAAATAGTTTTATACAGTCATCTAATCAAATCTCACCATAGGAAATAATTTTAGGGTATGATAAATCTTAATTGCTATATCTATAATTGGGCATATGTGTAAGTGCATACTAATCAAACACAAATAAGAGTTAAAAATGAGTCCAAAAGATTGTAAGAGTGATTTTAGATAAATCGTACAAATTATTAACAAATTTAAACGTATATATAATATGGACTTGAAAAATATTAAAGGTAGATCCTTATTACCATTTTTCTTAAATTTGAATAAAAATATTACATCTCTAGCTCAGTTTTTATTATTAAAAAATATAGTATATTTTATTAAAAATGGTAAGAGTTTATCTTTGCAACTTTTTGAGAGGTTCAAATTAGACATTGATGTGCCTTTATCTATATTTTCTTAATGCCTACGGATTATTTAAAAGAGTTTAATAGTAGAAATAATCAAAGGAAGCTTAGTAGAGGACGATATGAACATCATGACAAAAGACTTGAATGTGCCTATATATGTATTTTTCTTGAACGAAGACCATAATTGGCCTCCATCATGACAAAAGACAAAAATACATTGAATTATTATGTTCATCGAAAGGTTACGTTCTTGCTTTAATTTTTTTTAAACCTATATCGATCTCTAAGAGTTTGTTCAATATCCTGGTTTACTAAAAAAAAACACTAGATGTATTCAACAAGTTCAAGGATGAGCAAGGAAAATTTAGTAAAAGAATCATTGTTGATGTTGAGGGGATGTTAAGCTTGTATGAAGCTACACATCTCATGGTTCGTGGAGAGGATATTTTGGAAGATGCCTTGGCTTTCACTACCACTCACCTGGACTTTGTTGCCAACGAATTGAGCCATCCTCGAGCAATACAAATCAAACATAGCTTAAGGCAGGCTCTGCACAAGAACTTGCCTAGGTTGGAAGCACGAAGCTACATTTCCATATACGAGAAGGATCCTTCGCATAATGAAAACTTACTTATTTTGGCGAAACTAGATTTCAACATGCTACAAAGTGTACATCAAAAGGAATTCGGCAACCTTTTCAAGTAAGGGCTTCAATCATACGTACACCATAACTAGGAAAAAAAATTAATGTGATTTAATATAAATAGACTACTCCTTCTCATTATTATTTTTGTTTTTGGTCTTTGTAGATGGTGGAAGGAATTGGATGCAGCTAATAAACTACCGTTTGCAAGAGATAGGATGGTGGAAGGTAGTTTTTGGGCTATGGGGCTATTTTTTGAGCCTCAATATTCTATCGGAAGAAAATTTATGTCGAAATTAATCATCATAATAACAGCCATTGATGATGCTTATGATGCATATGGAACAATTGATGAATTGGAACTTTTTACCAAGGCAATTGAAAGGTCAGTTTAGCACATCATTTATACAGGGTCTTGTTAACTAGTTATTTTCGGGAGACTCTTTAAACATTTTAAATTTATGTTAACTTTTACATTCTTTAAAAATGTAAAAGTTTTTAATTTCCAATAAATTTTATTACATAAATTTTCATAAAAAATAAATTTATGTTAACTTTTACATTCTTTAAAAATGTAAAAGTTTTTAATTTCCAATAAATTTTATTACATAAATTTTCATAAAAAGTTATTATTTAAAGTCCTTAACTAGTATTATATCCCTTTATATAAATATAAATGAAAGTGATTTTCAGGTGGGATATTAGCTGCTTGGATGATCTTCCAGATTATATGAGGTTTCTCTACAAAATAACCTTAGATCTTTACGAAGAAATGGAGCAGGAAATGCAGAAAAGTGGAAGAGCATATGTGCTGAGCTACTACAAAAAAGCAGTATGGATTTTTCGTTTTATTATTTATATAATTATTTTAAAGATTCTACAGTTCAATTTCTTTAGTCAAATTTTAATTTATATTTTTTTAAAAAAACTTTCTTGTTTATTTAAAAATGTCCTCGAGAGTTTAACTCAGTTGGTATGGACAATGTATAATATATGCAAGGTATGAGGTTCGATTCCCAACCACCACAAAAAAATAGAATTTTAAATATTAATTATAAATTTTTTGAAAATTTACTTGTGATTTGTGCATAATTTTGATGTATTCTATTATGTACACTATTTATTATACATTCACAGTTTTTGTCAAATTTTGTCAAAAAACCCAGTTAAAAAAATGAAATTTCATCAAGTAGCCCGGTGGCTAGGAAAAAAAAAATGTAATTTCAAATGTTTTATGAAGAAAAAAAAACTAAATGGTTTAGTTTTTTCTACCGCTAACCCGTAGAACTTGGATATTGATGGAAAATGTCCACAAATTCTATTTAACTCGTAAAATATCAAAATTGTTGAGACGATTAACATTAAATGCTATTTTTAATTTCCCTAAAAAAATTAAATTCTAACACAAATATATACTCCAAAATATAAAGAAAATTACTTATAATTAATTGTGGTGGCAGTTCATACAATTCATTCAAGCTTATATGATCGAGGCCAGATGGTTAAACAATAATTATAAACCAACACTAGAAGAGTACATTTACCTATCAACAGAAACATGTGGTTACACATTGTTGATATGTACCAGTTTCATTGGTATGGGAGATATAACCACAGAGGAGATCATCAAGTGGGTATCAAATGAAACAAAAATTGTTAATGCTGCTATTGTTATTGGCAGGATAATGGATGATATTGCGTCCAATGAGGTATAAATATAAAATTTTAATCTTTTCTTCAATGTCTTTGTTTTAAGGGTCATGCTAACCGGTGCCCCGTGCACTCGTTAAGCATACAAAAAAAGAAAATTATTATCATAAAAGGAAACTGTTTTTGACTTTTTATAAATTAATTACACAATTTCAATGTATTAACTACTATATAATTTTTTTTTTAGTATGCTTAACCAGTGCTCCAGAGGCACCGATTAGCATTTCCCTTGTTTTAATTCAATGTAAACATTTACGTGAATTATTATTCGTTGTATATAGTTTGAACAGAAAAGAGAACATATGTCCTCATTCTTGGAATGCTATATGAAGAAGTATAATGTCTCTAGGGAAGCTTCAATTCAAGAAGGTAGAAAGAGGATTGCCAATGCTTGGAAAGATATGAATAAGGAATGTCTTAGGCCAACGGAAATTCCAATGCCTTTTCTTACACGTATTTTAAACCTCTCACGTGTTATTGATGTGTTTTATAAAGATGAAGATAACTACACGAATCCTGAAGGAGAAATGAAAACATTCATTAAAGCTTTGCTTGTAGATCCAGTGGTGGTTTGA
Protein sequence

>MS.gene009763.t1

MAPKSDLHRNVADYKPSVWGDYFLRYASESMEVDQSIEAQIETLKNNVRDMLVSKTENPLEKVHLIDSICRLGVSYHFENEIEEVLQHIHKNYVENGELTIFEDNLCSLAVLFRLLRQQGLHVSPNVFNKFKDEQGKFSKRIIVDVEGMLSLYEATHLMVRGEDILEDALAFTTTHLDFVANELSHPRAIQIKHSLRQALHKNLPRLEARSYISIYEKDPSHNENLLILAKLDFNMLQSVHQKEFGNLFKWWKELDAANKLPFARDRMVEGSFWAMGLFFEPQYSIGRKFMSKLIIIITAIDDAYDAYGTIDELELFTKAIERWDISCLDDLPDYMRFLYKITLDLYEEMEQEMQKSGRAYVLSYYKKAFIQFIQAYMIEARWLNNNYKPTLEEYIYLSTETCGYTLLICTSFIGMGDITTEEIIKWVSNETKIVNAAIVIGRIMDDIASNEFEQKREHMSSFLECYMKKYNVSREASIQEGRKRIANAWKDMNKECLRPTEIPMPFLTRILNLSRVIDVFYKDEDNYTNPEGEMKTFIKALLVDPVVV