Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069726.t1 | XP_003628406.2 | 94.9 | 510 | 26 | 0 | 1 | 510 | 79 | 588 | 5.30E-288 | 999.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069726.t1 | Q93X23 | 51.2 | 508 | 243 | 3 | 7 | 510 | 87 | 593 | 9.3e-148 | 525.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069726.t1 | G7LB17 | 94.9 | 510 | 26 | 0 | 1 | 510 | 79 | 588 | 3.8e-288 | 999.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055359 | MS.gene069726 | 0.800979 | 1.12E-48 | -1.69E-46 |
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069726.t1 | MTR_8g057020 | 94.902 | 510 | 26 | 0 | 1 | 510 | 79 | 588 | 0.0 | 1021 |
MS.gene069726.t1 | MTR_2g064425 | 68.235 | 510 | 161 | 1 | 1 | 510 | 77 | 585 | 0.0 | 732 |
MS.gene069726.t1 | MTR_2g064425 | 65.882 | 510 | 158 | 2 | 1 | 510 | 77 | 570 | 0.0 | 695 |
MS.gene069726.t1 | MTR_2g065450 | 65.339 | 502 | 172 | 2 | 10 | 510 | 89 | 589 | 0.0 | 687 |
MS.gene069726.t1 | MTR_2g064425 | 71.084 | 332 | 95 | 1 | 1 | 332 | 77 | 407 | 1.08e-172 | 494 |
MS.gene069726.t1 | MTR_2g064425 | 67.470 | 332 | 92 | 2 | 1 | 332 | 77 | 392 | 3.69e-158 | 456 |
MS.gene069726.t1 | MTR_4g045810 | 42.578 | 512 | 284 | 7 | 4 | 509 | 72 | 579 | 6.96e-136 | 405 |
MS.gene069726.t1 | MTR_4g081460 | 37.647 | 510 | 306 | 7 | 10 | 510 | 55 | 561 | 2.29e-108 | 334 |
MS.gene069726.t1 | MTR_7g010710 | 34.756 | 492 | 307 | 7 | 26 | 508 | 66 | 552 | 3.56e-104 | 323 |
MS.gene069726.t1 | MTR_2g089120 | 35.458 | 502 | 315 | 6 | 11 | 510 | 70 | 564 | 1.29e-103 | 322 |
MS.gene069726.t1 | MTR_2g089130 | 35.404 | 483 | 304 | 5 | 29 | 510 | 88 | 563 | 4.98e-101 | 315 |
MS.gene069726.t1 | MTR_6g039440 | 34.314 | 510 | 327 | 5 | 7 | 510 | 45 | 552 | 2.22e-97 | 305 |
MS.gene069726.t1 | MTR_2g081980 | 32.952 | 525 | 316 | 9 | 7 | 509 | 45 | 555 | 6.57e-93 | 294 |
MS.gene069726.t1 | MTR_8g007515 | 35.673 | 513 | 319 | 8 | 6 | 509 | 44 | 554 | 7.51e-93 | 293 |
MS.gene069726.t1 | MTR_2g082010 | 33.918 | 513 | 325 | 8 | 7 | 509 | 58 | 566 | 1.42e-92 | 293 |
MS.gene069726.t1 | MTR_6g008560 | 32.877 | 511 | 334 | 5 | 7 | 510 | 48 | 556 | 5.85e-90 | 286 |
MS.gene069726.t1 | MTR_5g062230 | 33.725 | 510 | 330 | 5 | 7 | 510 | 45 | 552 | 3.43e-89 | 284 |
MS.gene069726.t1 | MTR_4g048460 | 34.766 | 512 | 322 | 8 | 7 | 510 | 53 | 560 | 5.81e-89 | 283 |
MS.gene069726.t1 | MTR_3g464190 | 33.855 | 511 | 327 | 7 | 7 | 509 | 48 | 555 | 4.26e-88 | 281 |
MS.gene069726.t1 | MTR_5g094620 | 33.663 | 505 | 314 | 7 | 9 | 510 | 50 | 536 | 1.65e-87 | 279 |
MS.gene069726.t1 | MTR_5g073260 | 34.236 | 517 | 324 | 7 | 1 | 510 | 44 | 551 | 2.51e-87 | 279 |
MS.gene069726.t1 | MTR_5g073200 | 34.375 | 512 | 323 | 8 | 7 | 509 | 40 | 547 | 5.28e-87 | 278 |
MS.gene069726.t1 | MTR_2g082060 | 33.143 | 525 | 317 | 11 | 2 | 509 | 44 | 551 | 1.22e-85 | 275 |
MS.gene069726.t1 | MTR_4g092010 | 32.039 | 515 | 331 | 11 | 1 | 505 | 49 | 554 | 1.32e-84 | 272 |
MS.gene069726.t1 | MTR_4g092020 | 32.797 | 497 | 316 | 9 | 23 | 509 | 81 | 569 | 1.39e-80 | 262 |
MS.gene069726.t1 | MTR_4g048460 | 38.164 | 414 | 245 | 7 | 7 | 413 | 53 | 462 | 1.28e-79 | 256 |
MS.gene069726.t1 | MTR_2g010960 | 30.577 | 520 | 336 | 9 | 4 | 505 | 5 | 517 | 1.21e-73 | 242 |
MS.gene069726.t1 | MTR_6g064980 | 30.000 | 510 | 342 | 9 | 7 | 505 | 7 | 512 | 6.34e-72 | 238 |
MS.gene069726.t1 | MTR_3g063170 | 29.020 | 510 | 347 | 9 | 7 | 505 | 7 | 512 | 5.55e-71 | 235 |
MS.gene069726.t1 | MTR_3g063120 | 30.453 | 486 | 324 | 7 | 31 | 505 | 6 | 488 | 3.70e-70 | 232 |
MS.gene069726.t1 | MTR_3g465090 | 29.020 | 510 | 347 | 9 | 7 | 505 | 7 | 512 | 9.00e-70 | 232 |
MS.gene069726.t1 | MTR_3g052120 | 29.767 | 514 | 338 | 10 | 7 | 505 | 7 | 512 | 9.20e-70 | 232 |
MS.gene069726.t1 | MTR_6g008560 | 32.587 | 402 | 268 | 3 | 110 | 510 | 1 | 400 | 2.71e-69 | 227 |
MS.gene069726.t1 | MTR_3g063140 | 29.020 | 510 | 347 | 9 | 7 | 505 | 7 | 512 | 1.83e-68 | 229 |
MS.gene069726.t1 | MTR_4g019550 | 31.055 | 512 | 336 | 8 | 7 | 509 | 53 | 556 | 2.28e-68 | 229 |
MS.gene069726.t1 | MTR_2g082050 | 29.331 | 508 | 300 | 8 | 7 | 509 | 4 | 457 | 1.15e-62 | 212 |
MS.gene069726.t1 | MTR_6g065040 | 30.597 | 402 | 271 | 7 | 99 | 494 | 2 | 401 | 4.46e-58 | 198 |
MS.gene069726.t1 | MTR_2g012870 | 28.894 | 443 | 285 | 9 | 35 | 455 | 261 | 695 | 3.39e-42 | 161 |
MS.gene069726.t1 | MTR_3g058160 | 27.152 | 453 | 290 | 15 | 28 | 449 | 65 | 508 | 6.20e-39 | 150 |
MS.gene069726.t1 | MTR_2g064295 | 27.635 | 427 | 273 | 12 | 28 | 427 | 256 | 673 | 1.82e-38 | 150 |
MS.gene069726.t1 | MTR_3g058160 | 27.152 | 453 | 290 | 15 | 28 | 449 | 256 | 699 | 2.44e-38 | 149 |
MS.gene069726.t1 | MTR_3g058160 | 27.152 | 453 | 290 | 15 | 28 | 449 | 276 | 719 | 3.10e-38 | 149 |
MS.gene069726.t1 | MTR_3g058160 | 27.152 | 453 | 290 | 15 | 28 | 449 | 269 | 712 | 3.43e-38 | 149 |
MS.gene069726.t1 | MTR_3g058160 | 25.949 | 474 | 290 | 15 | 28 | 449 | 276 | 740 | 1.63e-35 | 141 |
MS.gene069726.t1 | MTR_2g012900 | 28.043 | 460 | 283 | 13 | 22 | 443 | 248 | 697 | 3.70e-35 | 140 |
MS.gene069726.t1 | MTR_3g063160 | 27.208 | 283 | 199 | 3 | 7 | 283 | 7 | 288 | 3.44e-31 | 122 |
MS.gene069726.t1 | MTR_5g094530 | 32.381 | 210 | 107 | 2 | 124 | 332 | 5 | 180 | 9.38e-27 | 107 |
MS.gene069726.t1 | MTR_7g050990 | 42.361 | 144 | 74 | 1 | 156 | 299 | 29 | 163 | 1.96e-26 | 114 |
MS.gene069726.t1 | MTR_7g011663 | 28.626 | 262 | 156 | 5 | 31 | 262 | 349 | 609 | 1.52e-22 | 102 |
MS.gene069726.t1 | MTR_7g011770 | 27.526 | 287 | 176 | 6 | 32 | 287 | 246 | 531 | 2.84e-22 | 101 |
MS.gene069726.t1 | MTR_5g030050 | 25.660 | 265 | 151 | 8 | 32 | 264 | 4 | 254 | 4.40e-19 | 88.6 |
MS.gene069726.t1 | MTR_7g094970 | 24.908 | 273 | 162 | 6 | 32 | 268 | 212 | 477 | 4.80e-19 | 90.9 |
MS.gene069726.t1 | MTR_5g081730 | 44.330 | 97 | 53 | 1 | 116 | 212 | 16 | 111 | 4.60e-17 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene069726.t1 | AT2G24210 | 44.894 | 519 | 266 | 11 | 7 | 510 | 76 | 589 | 7.78e-148 | 436 |
MS.gene069726.t1 | AT3G25830 | 44.038 | 520 | 270 | 10 | 8 | 510 | 78 | 593 | 8.33e-147 | 434 |
MS.gene069726.t1 | AT3G25820 | 44.038 | 520 | 270 | 10 | 8 | 510 | 78 | 593 | 8.33e-147 | 434 |
MS.gene069726.t1 | AT4G16730 | 41.245 | 514 | 288 | 5 | 10 | 510 | 26 | 538 | 7.18e-146 | 429 |
MS.gene069726.t1 | AT4G16730 | 41.260 | 492 | 275 | 5 | 32 | 510 | 2 | 492 | 6.94e-140 | 412 |
MS.gene069726.t1 | AT3G25810 | 43.346 | 526 | 268 | 13 | 8 | 510 | 78 | 596 | 6.73e-138 | 411 |
MS.gene069726.t1 | AT4G16740 | 40.194 | 515 | 284 | 7 | 10 | 510 | 59 | 563 | 3.93e-133 | 397 |
MS.gene069726.t1 | AT3G25820 | 44.633 | 354 | 181 | 7 | 8 | 350 | 78 | 427 | 4.81e-96 | 298 |
MS.gene069726.t1 | AT1G61680 | 33.947 | 489 | 314 | 7 | 17 | 499 | 82 | 567 | 2.16e-88 | 282 |
MS.gene069726.t1 | AT5G23960 | 32.171 | 516 | 340 | 6 | 2 | 510 | 32 | 544 | 5.45e-88 | 280 |
MS.gene069726.t1 | AT5G23960 | 32.432 | 518 | 338 | 7 | 2 | 510 | 32 | 546 | 1.06e-87 | 280 |
MS.gene069726.t1 | AT1G61680 | 34.298 | 484 | 302 | 8 | 17 | 494 | 82 | 555 | 1.14e-87 | 280 |
MS.gene069726.t1 | AT4G16740 | 41.493 | 335 | 178 | 4 | 10 | 332 | 59 | 387 | 9.57e-84 | 265 |
MS.gene069726.t1 | AT3G14520 | 30.938 | 501 | 338 | 4 | 17 | 510 | 104 | 603 | 2.09e-78 | 257 |
MS.gene069726.t1 | AT1G31950 | 31.365 | 491 | 329 | 4 | 27 | 510 | 116 | 605 | 1.15e-77 | 255 |
MS.gene069726.t1 | AT1G31950 | 31.365 | 491 | 329 | 4 | 27 | 510 | 117 | 606 | 1.19e-77 | 255 |
MS.gene069726.t1 | AT3G25820 | 43.234 | 303 | 154 | 7 | 8 | 299 | 78 | 373 | 1.34e-74 | 241 |
MS.gene069726.t1 | AT3G25820 | 43.234 | 303 | 154 | 7 | 8 | 299 | 78 | 373 | 1.34e-74 | 241 |
MS.gene069726.t1 | AT1G70080 | 31.493 | 489 | 324 | 5 | 31 | 509 | 122 | 609 | 4.38e-74 | 246 |
MS.gene069726.t1 | AT3G14540 | 30.539 | 501 | 340 | 4 | 17 | 510 | 101 | 600 | 3.89e-73 | 243 |
MS.gene069726.t1 | AT4G16740 | 42.014 | 288 | 150 | 3 | 10 | 285 | 59 | 341 | 8.28e-70 | 228 |
MS.gene069726.t1 | AT4G16740 | 42.014 | 288 | 150 | 3 | 10 | 285 | 59 | 341 | 8.28e-70 | 228 |
MS.gene069726.t1 | AT3G29410 | 29.249 | 506 | 352 | 5 | 10 | 510 | 98 | 602 | 9.46e-70 | 234 |
MS.gene069726.t1 | AT3G29410 | 29.098 | 488 | 341 | 4 | 27 | 510 | 11 | 497 | 1.78e-69 | 231 |
MS.gene069726.t1 | AT1G33750 | 29.703 | 505 | 348 | 6 | 11 | 510 | 100 | 602 | 1.11e-67 | 229 |
MS.gene069726.t1 | AT1G31950 | 32.234 | 394 | 261 | 3 | 27 | 415 | 117 | 509 | 8.50e-66 | 222 |
MS.gene069726.t1 | AT3G14490 | 30.588 | 510 | 342 | 8 | 10 | 510 | 94 | 600 | 1.48e-65 | 223 |
MS.gene069726.t1 | AT3G32030 | 28.240 | 517 | 363 | 7 | 1 | 510 | 88 | 603 | 1.96e-63 | 217 |
MS.gene069726.t1 | AT3G14540 | 31.436 | 404 | 271 | 3 | 17 | 415 | 101 | 503 | 1.32e-62 | 213 |
MS.gene069726.t1 | AT5G44630 | 29.132 | 484 | 336 | 5 | 32 | 509 | 73 | 555 | 1.68e-62 | 214 |
MS.gene069726.t1 | AT4G15870 | 27.935 | 494 | 337 | 7 | 22 | 509 | 116 | 596 | 1.35e-61 | 212 |
MS.gene069726.t1 | AT3G29110 | 30.103 | 485 | 330 | 8 | 32 | 509 | 113 | 595 | 1.10e-58 | 204 |
MS.gene069726.t1 | AT3G29190 | 29.550 | 511 | 348 | 8 | 10 | 510 | 92 | 600 | 3.60e-57 | 200 |
MS.gene069726.t1 | AT4G13300 | 26.367 | 512 | 361 | 8 | 10 | 509 | 45 | 552 | 1.94e-55 | 195 |
MS.gene069726.t1 | AT4G13280 | 26.947 | 475 | 340 | 6 | 41 | 509 | 79 | 552 | 4.12e-53 | 188 |
MS.gene069726.t1 | AT2G23230 | 27.984 | 511 | 352 | 8 | 10 | 507 | 89 | 596 | 2.95e-52 | 187 |
MS.gene069726.t1 | AT4G20210 | 27.126 | 494 | 353 | 6 | 22 | 509 | 106 | 598 | 2.94e-51 | 184 |
MS.gene069726.t1 | AT2G23230 | 27.789 | 511 | 348 | 9 | 10 | 507 | 89 | 591 | 3.79e-51 | 184 |
MS.gene069726.t1 | AT4G20200 | 26.275 | 510 | 369 | 6 | 6 | 509 | 94 | 602 | 5.73e-51 | 184 |
MS.gene069726.t1 | AT1G48800 | 28.544 | 515 | 339 | 11 | 9 | 504 | 95 | 599 | 2.65e-49 | 179 |
MS.gene069726.t1 | AT4G20230 | 26.793 | 474 | 339 | 7 | 38 | 504 | 138 | 610 | 5.09e-49 | 178 |
MS.gene069726.t1 | AT4G20230 | 26.793 | 474 | 339 | 7 | 38 | 504 | 126 | 598 | 5.72e-49 | 178 |
MS.gene069726.t1 | AT1G66020 | 26.154 | 520 | 359 | 9 | 10 | 509 | 82 | 596 | 4.81e-45 | 167 |
MS.gene069726.t1 | AT4G13280 | 26.737 | 475 | 311 | 9 | 41 | 509 | 79 | 522 | 9.78e-45 | 165 |
MS.gene069726.t1 | AT1G48820 | 27.129 | 505 | 323 | 9 | 9 | 507 | 95 | 560 | 1.23e-43 | 162 |
MS.gene069726.t1 | AT1G66020 | 29.538 | 325 | 209 | 7 | 10 | 319 | 82 | 401 | 2.63e-37 | 142 |
MS.gene069726.t1 | AT5G48110 | 27.273 | 341 | 241 | 6 | 171 | 509 | 2 | 337 | 1.60e-36 | 138 |
MS.gene069726.t1 | AT1G79460 | 24.466 | 515 | 345 | 14 | 28 | 509 | 274 | 777 | 1.80e-34 | 138 |
MS.gene069726.t1 | AT1G61120 | 26.490 | 453 | 282 | 13 | 22 | 443 | 279 | 711 | 2.95e-32 | 132 |
MS.gene069726.t1 | AT4G02780 | 26.812 | 276 | 155 | 7 | 26 | 263 | 329 | 595 | 2.35e-19 | 92.0 |
Find 75 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTAATTTCTTTGTTAAAA+TGG | 0.095292 | 8.4:+53886051 | None:intergenic |
TTTACTCCAATTCGCTAAAT+TGG | 0.181502 | 8.4:-53884979 | MS.gene069726:CDS |
GTTTGAAGATGAAACTATAT+TGG | 0.261667 | 8.4:-53885180 | MS.gene069726:CDS |
CTTTGGATCTTCCATTGAAT+TGG | 0.264293 | 8.4:-53885070 | MS.gene069726:CDS |
ATTCTGAATTGTTCAAAATC+TGG | 0.272530 | 8.4:+53878517 | None:intergenic |
ATGCACACTTTAGTTCTTCT+AGG | 0.272677 | 8.4:+53884931 | None:intergenic |
TGGAAGACTTGGTTCGTTTA+GGG | 0.282247 | 8.4:-53877560 | MS.gene069726:CDS |
ATCATCAACTGTGGTAATTA+AGG | 0.283666 | 8.4:+53878474 | None:intergenic |
AAGCATATTTGCATGTAGTA+TGG | 0.312552 | 8.4:+53878267 | None:intergenic |
TGAAATCCAATTTAGCGAAT+TGG | 0.313439 | 8.4:+53884973 | None:intergenic |
ATGGAAGACTTGGTTCGTTT+AGG | 0.316202 | 8.4:-53877561 | MS.gene069726:CDS |
AGTTGCTTACTGCTTTCTTC+AGG | 0.318825 | 8.4:+53878166 | None:intergenic |
GAGATCAACGCAAAGTTCTA+AGG | 0.332792 | 8.4:-53886163 | MS.gene069726:CDS |
CAAAGAAATTAGGGACATAT+TGG | 0.340628 | 8.4:-53886042 | MS.gene069726:CDS |
AGTCCATGATGTCTACATTA+TGG | 0.344971 | 8.4:-53876629 | MS.gene069726:CDS |
AAATGCATTATGAACGAAAC+TGG | 0.357987 | 8.4:-53876684 | MS.gene069726:CDS |
TGAAGAGCTCAAGTTCTTCC+AGG | 0.364896 | 8.4:+53878431 | None:intergenic |
ATAATCACGAGCCTCTATTT+CGG | 0.397407 | 8.4:+53876656 | None:intergenic |
GGACAGTTTGTAGATGTTCA+TGG | 0.404960 | 8.4:-53885236 | MS.gene069726:CDS |
ACTTCTAATAAGTCATGCTT+TGG | 0.407606 | 8.4:-53885087 | MS.gene069726:CDS |
GAATTGTTGAGAACTTTGTT+TGG | 0.420249 | 8.4:-53878561 | MS.gene069726:CDS |
ATATTCTTTGAGAAAATTTG+TGG | 0.422729 | 8.4:+53885139 | None:intergenic |
TTAATGCAGGAAGAAATTTA+CGG | 0.426943 | 8.4:-53886185 | None:intergenic |
GTTGAAGAATACATGGCAAA+TGG | 0.426945 | 8.4:-53877651 | MS.gene069726:CDS |
TGTATGTTCATGTACCAGTA+TGG | 0.427645 | 8.4:-53876528 | MS.gene069726:CDS |
TGCTATAAGCATCTCCATAC+TGG | 0.428412 | 8.4:+53876514 | None:intergenic |
ATAATGCATTTATTTAACTT+TGG | 0.429400 | 8.4:+53876696 | None:intergenic |
GAGAACTTTGTTTGGAATGT+TGG | 0.432073 | 8.4:-53878553 | MS.gene069726:CDS |
CTCTTGCAATGGTTGCTGTC+AGG | 0.432621 | 8.4:+53877517 | None:intergenic |
CGAGAAATTGTCCAATTCAA+TGG | 0.434579 | 8.4:+53885059 | None:intergenic |
GATGCCACATTCAATCGAAA+TGG | 0.438499 | 8.4:-53877580 | MS.gene069726:CDS |
ATTGATGTATTGCAAAGGAT+TGG | 0.446275 | 8.4:-53886083 | MS.gene069726:CDS |
TCTTCACAGAAGCTATTGAT+AGG | 0.451974 | 8.4:-53878414 | MS.gene069726:intron |
TAGATGGGATTTGAATGCCT+TGG | 0.458301 | 8.4:-53878298 | MS.gene069726:CDS |
TTAAAGAGTGAAAATGAGAC+AGG | 0.459331 | 8.4:-53876726 | MS.gene069726:intron |
TGCACAACACTTCAGGGAAT+CGG | 0.460962 | 8.4:+53876444 | None:intergenic |
AAATACAGCATGTGCACCTA+TGG | 0.461919 | 8.4:+53877620 | None:intergenic |
GATGATGTGTATGATTTGTA+TGG | 0.476992 | 8.4:-53878457 | MS.gene069726:CDS |
CATGGTTATGAGATATCTAC+AGG | 0.495263 | 8.4:-53885939 | MS.gene069726:intron |
CTTACTGCTTTCTTCAGGTA+CGG | 0.500237 | 8.4:+53878171 | None:intergenic |
AACTGGAGCTTCCGAAATAG+AGG | 0.500437 | 8.4:-53876667 | MS.gene069726:CDS |
GCCATGTATTCTTCAACGGT+TGG | 0.503430 | 8.4:+53877657 | None:intergenic |
GAAGCAAAGTGGTACTATAG+TGG | 0.511242 | 8.4:-53877687 | MS.gene069726:CDS |
GCAAGAGTTGCTAATGACTA+CGG | 0.511511 | 8.4:-53877501 | MS.gene069726:CDS |
TTCAATCGAAATGGAAGACT+TGG | 0.513598 | 8.4:-53877571 | MS.gene069726:CDS |
TTGAAGAATACATGGCAAAT+GGG | 0.520906 | 8.4:-53877650 | MS.gene069726:CDS |
TGCTGTCAGGCGAATTATGT+TGG | 0.521802 | 8.4:+53877530 | None:intergenic |
CTTCCATAATGTAGACATCA+TGG | 0.522455 | 8.4:+53876626 | None:intergenic |
AGCATATTTGCATGTAGTAT+GGG | 0.525197 | 8.4:+53878268 | None:intergenic |
GAATATTTGAAACAAAATAG+AGG | 0.535112 | 8.4:-53885122 | MS.gene069726:CDS |
TTTCTCGACTCGAGGCTCGA+TGG | 0.546070 | 8.4:-53885043 | MS.gene069726:CDS |
ATTTGCCATGTATTCTTCAA+CGG | 0.557754 | 8.4:+53877653 | None:intergenic |
GTCATTAGCAACTCTTGCAA+TGG | 0.561701 | 8.4:+53877506 | None:intergenic |
CAAGAGTTGCTAATGACTAC+GGG | 0.573530 | 8.4:-53877500 | MS.gene069726:CDS |
TTCAGACTCTTGAGGCAACA+TGG | 0.578812 | 8.4:-53885957 | MS.gene069726:CDS |
TCTTCCATTTCGATTGAATG+TGG | 0.582432 | 8.4:+53877576 | None:intergenic |
TCCAACCGTTGAAGAATACA+TGG | 0.583771 | 8.4:-53877658 | MS.gene069726:CDS |
CATATTTGATAGAAGCAAAG+TGG | 0.585970 | 8.4:-53877698 | MS.gene069726:CDS |
TTGGACAATTTCTCGACTCG+AGG | 0.586359 | 8.4:-53885051 | MS.gene069726:CDS |
AGATCAACGCAAAGTTCTAA+GGG | 0.587082 | 8.4:-53886162 | MS.gene069726:CDS |
AAGAACTAAAGTGTGCATCA+AGG | 0.590523 | 8.4:-53884926 | MS.gene069726:intron |
GCACATGCTGTATTTACCCA+TGG | 0.601527 | 8.4:-53877612 | MS.gene069726:CDS |
GGAAGACTTGGTTCGTTTAG+GGG | 0.601991 | 8.4:-53877559 | MS.gene069726:CDS |
AGTTTATTGATGTATTGCAA+AGG | 0.602279 | 8.4:-53886088 | MS.gene069726:CDS |
GAAGAGCTCAAGTTCTTCCA+GGG | 0.609664 | 8.4:+53878432 | None:intergenic |
GTAGTATGGGAGAGAATCCA+AGG | 0.610000 | 8.4:+53878281 | None:intergenic |
GTGGCATCGAAAAGTAACCA+TGG | 0.621565 | 8.4:+53877595 | None:intergenic |
TGGCATCGAAAAGTAACCAT+GGG | 0.626709 | 8.4:+53877596 | None:intergenic |
CATGCAAATATGCTTTCATG+CGG | 0.630142 | 8.4:-53878259 | MS.gene069726:CDS |
GAGTCTGAACTTGAGTGCTG+TGG | 0.633446 | 8.4:+53885971 | None:intergenic |
CACTCAAGTTCAGACTCTTG+AGG | 0.656354 | 8.4:-53885965 | MS.gene069726:CDS |
GCAAATGGGTGTGTATCCAT+AGG | 0.671102 | 8.4:-53877636 | MS.gene069726:CDS |
GTATGATTTGTATGGCACCC+TGG | 0.671543 | 8.4:-53878449 | MS.gene069726:CDS |
ATCATACACATCATCAACTG+TGG | 0.683052 | 8.4:+53878465 | None:intergenic |
GACTTATTAGAAGTGACACG+TGG | 0.737197 | 8.4:+53885096 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.4 | gene | 53876455 | 53886198 | 53876455 | ID=MS.gene069726 |
chr8.4 | mRNA | 53876455 | 53886198 | 53876455 | ID=MS.gene069726.t1;Parent=MS.gene069726 |
chr8.4 | exon | 53885940 | 53886198 | 53885940 | ID=MS.gene069726.t1.exon1;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53885940 | 53886198 | 53885940 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
chr8.4 | exon | 53884927 | 53885302 | 53884927 | ID=MS.gene069726.t1.exon2;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53884927 | 53885302 | 53884927 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
chr8.4 | exon | 53878415 | 53878633 | 53878415 | ID=MS.gene069726.t1.exon3;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53878415 | 53878633 | 53878415 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
chr8.4 | exon | 53878176 | 53878317 | 53878176 | ID=MS.gene069726.t1.exon4;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53878176 | 53878317 | 53878176 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
chr8.4 | exon | 53877491 | 53877739 | 53877491 | ID=MS.gene069726.t1.exon5;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53877491 | 53877739 | 53877491 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
chr8.4 | exon | 53876455 | 53876742 | 53876455 | ID=MS.gene069726.t1.exon6;Parent=MS.gene069726.t1 |
chr8.4 | CDS | 53876455 | 53876742 | 53876455 | ID=cds.MS.gene069726.t1;Parent=MS.gene069726.t1 |
Gene Sequence |
Protein sequence |