AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038982

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038982.t1 MTR_2g064425 90.381 499 48 0 1 499 93 591 0.0 948
MS.gene038982.t1 MTR_2g064425 87.776 499 46 1 1 499 93 576 0.0 909
MS.gene038982.t1 MTR_8g057020 71.862 494 138 1 1 493 95 588 0.0 748
MS.gene038982.t1 MTR_2g065450 72.672 494 134 1 1 493 96 589 0.0 732
MS.gene038982.t1 MTR_2g064425 90.476 315 30 0 1 315 93 407 0.0 601
MS.gene038982.t1 MTR_2g064425 86.349 315 28 1 1 315 93 392 0.0 563
MS.gene038982.t1 MTR_4g045810 48.790 496 242 6 5 492 88 579 2.37e-155 454
MS.gene038982.t1 MTR_7g010710 40.244 492 279 8 10 491 66 552 9.36e-122 367
MS.gene038982.t1 MTR_2g089120 38.923 483 287 5 13 493 88 564 1.08e-110 340
MS.gene038982.t1 MTR_4g081460 38.477 486 291 5 15 494 79 562 1.59e-110 339
MS.gene038982.t1 MTR_2g089130 39.004 482 287 4 13 493 88 563 4.40e-109 335
MS.gene038982.t1 MTR_6g039440 34.400 500 320 5 1 494 56 553 2.24e-104 323
MS.gene038982.t1 MTR_6g008560 35.141 498 315 5 3 494 62 557 2.66e-103 320
MS.gene038982.t1 MTR_4g048460 35.200 500 316 5 1 494 64 561 7.87e-103 319
MS.gene038982.t1 MTR_5g062230 34.870 499 319 3 1 494 56 553 1.57e-100 313
MS.gene038982.t1 MTR_5g094620 34.141 495 309 3 1 494 59 537 8.90e-100 310
MS.gene038982.t1 MTR_5g073200 35.529 501 314 5 1 494 51 549 6.24e-97 303
MS.gene038982.t1 MTR_3g464190 33.800 500 324 3 1 494 59 557 1.09e-96 303
MS.gene038982.t1 MTR_2g081980 33.929 504 320 7 2 494 56 557 2.34e-92 292
MS.gene038982.t1 MTR_2g082010 34.722 504 314 9 2 494 69 568 2.61e-92 292
MS.gene038982.t1 MTR_8g007515 34.722 504 315 9 2 494 56 556 5.19e-92 291
MS.gene038982.t1 MTR_5g073260 33.066 499 325 5 3 494 56 552 7.25e-89 283
MS.gene038982.t1 MTR_4g048460 37.845 399 241 4 1 394 64 460 4.57e-88 278
MS.gene038982.t1 MTR_2g082060 33.671 493 302 8 13 494 75 553 2.57e-83 268
MS.gene038982.t1 MTR_4g092020 34.476 496 314 6 4 492 78 569 1.28e-82 267
MS.gene038982.t1 MTR_4g092010 34.375 480 300 7 4 474 69 542 2.40e-81 263
MS.gene038982.t1 MTR_2g010960 32.932 498 321 6 2 488 22 517 4.98e-80 259
MS.gene038982.t1 MTR_3g465090 32.848 481 303 8 3 468 19 494 5.81e-79 256
MS.gene038982.t1 MTR_6g064980 31.791 497 325 8 3 488 19 512 3.67e-78 254
MS.gene038982.t1 MTR_6g008560 33.747 403 263 4 94 494 1 401 9.29e-78 249
MS.gene038982.t1 MTR_3g052120 32.563 476 311 5 3 468 19 494 5.22e-77 251
MS.gene038982.t1 MTR_3g063120 32.421 475 300 9 10 468 1 470 6.14e-77 250
MS.gene038982.t1 MTR_3g063170 31.866 477 313 7 3 468 19 494 6.98e-77 250
MS.gene038982.t1 MTR_3g063140 31.950 482 306 8 3 468 19 494 9.43e-76 247
MS.gene038982.t1 MTR_4g019550 31.537 501 308 7 12 494 75 558 1.94e-74 245
MS.gene038982.t1 MTR_6g065040 33.418 392 254 6 83 468 2 392 1.70e-66 220
MS.gene038982.t1 MTR_2g082050 30.165 484 281 8 13 492 27 457 1.55e-64 216
MS.gene038982.t1 MTR_3g058160 29.933 451 279 14 12 432 65 508 1.57e-45 168
MS.gene038982.t1 MTR_3g058160 29.933 451 279 14 12 432 256 699 8.36e-45 168
MS.gene038982.t1 MTR_3g058160 29.933 451 279 14 12 432 276 719 1.14e-44 168
MS.gene038982.t1 MTR_3g058160 29.933 451 279 14 12 432 269 712 1.40e-44 167
MS.gene038982.t1 MTR_2g064295 29.078 423 266 11 12 406 256 672 4.05e-44 166
MS.gene038982.t1 MTR_2g012870 29.927 411 260 9 19 406 261 666 4.06e-44 166
MS.gene038982.t1 MTR_3g058160 28.602 472 279 14 12 432 276 740 9.85e-42 159
MS.gene038982.t1 MTR_2g012900 30.979 439 257 13 7 406 249 680 1.15e-39 153
MS.gene038982.t1 MTR_3g063160 30.182 275 177 4 3 267 19 288 9.65e-36 135
MS.gene038982.t1 MTR_7g050990 43.750 144 72 1 140 283 29 163 1.85e-31 129
MS.gene038982.t1 MTR_5g094530 32.701 211 104 5 108 315 5 180 1.14e-24 101
MS.gene038982.t1 MTR_7g094970 27.341 267 163 6 16 252 212 477 5.00e-23 103
MS.gene038982.t1 MTR_7g011663 30.000 260 151 6 15 244 349 607 9.32e-23 102
MS.gene038982.t1 MTR_7g011770 28.920 287 172 7 16 271 246 531 6.18e-22 99.8
MS.gene038982.t1 MTR_5g030050 26.953 256 159 6 16 248 4 254 1.48e-20 92.8
MS.gene038982.t1 MTR_5g081730 51.515 99 43 2 100 196 16 111 1.45e-19 85.9
MS.gene038982.t1 MTR_7g057340 22.674 172 132 1 324 494 1 172 2.13e-13 68.9
MS.gene038982.t1 MTR_7g057390 22.093 172 130 2 324 494 1 169 3.35e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038982.t1 AT3G25830 48.235 510 245 9 1 494 88 594 1.49e-164 479
MS.gene038982.t1 AT3G25820 48.235 510 245 9 1 494 88 594 1.49e-164 479
MS.gene038982.t1 AT4G16730 45.545 505 262 5 3 494 35 539 3.96e-159 463
MS.gene038982.t1 AT3G25810 47.638 508 245 10 5 494 93 597 4.69e-159 465
MS.gene038982.t1 AT2G24210 47.140 507 252 10 1 494 87 590 3.62e-157 459
MS.gene038982.t1 AT4G16730 45.436 493 256 5 15 494 1 493 1.84e-154 449
MS.gene038982.t1 AT4G16740 45.508 512 246 9 2 494 67 564 3.53e-152 446
MS.gene038982.t1 AT3G25820 47.278 349 171 6 1 339 88 433 6.60e-108 328
MS.gene038982.t1 AT4G16740 46.386 332 149 6 2 315 67 387 7.83e-94 290
MS.gene038982.t1 AT1G61680 35.118 467 295 5 11 471 92 556 9.41e-89 283
MS.gene038982.t1 AT1G61680 34.904 467 289 6 11 471 92 549 1.32e-87 280
MS.gene038982.t1 AT5G23960 33.201 503 318 7 3 494 50 545 4.16e-87 278
MS.gene038982.t1 AT5G23960 33.465 505 316 8 3 494 50 547 3.34e-86 276
MS.gene038982.t1 AT3G25820 48.387 279 131 6 1 269 88 363 2.98e-82 261
MS.gene038982.t1 AT3G25820 48.387 279 131 6 1 269 88 363 2.98e-82 261
MS.gene038982.t1 AT4G16740 45.277 307 139 6 2 290 67 362 1.74e-76 245
MS.gene038982.t1 AT4G16740 45.277 307 139 6 2 290 67 362 1.74e-76 245
MS.gene038982.t1 AT1G70080 32.645 484 314 6 15 487 122 604 4.95e-73 243
MS.gene038982.t1 AT3G14520 28.656 506 344 5 1 494 104 604 9.67e-72 239
MS.gene038982.t1 AT1G31950 28.205 507 343 8 2 494 108 607 6.48e-71 237
MS.gene038982.t1 AT1G31950 28.205 507 343 8 2 494 107 606 7.05e-71 237
MS.gene038982.t1 AT3G29410 27.309 498 358 3 1 494 1 498 8.57e-68 226
MS.gene038982.t1 AT3G14540 27.930 512 340 8 1 494 101 601 2.13e-67 228
MS.gene038982.t1 AT3G29410 27.309 498 358 3 1 494 106 603 6.54e-67 226
MS.gene038982.t1 AT1G33750 27.711 498 355 4 1 494 107 603 2.90e-65 222
MS.gene038982.t1 AT3G32030 27.347 490 350 5 11 494 115 604 1.44e-61 212
MS.gene038982.t1 AT3G14490 29.126 515 328 14 2 494 102 601 6.58e-59 205
MS.gene038982.t1 AT4G15870 27.721 487 334 7 7 487 117 591 7.89e-58 202
MS.gene038982.t1 AT3G29190 29.485 485 336 5 16 494 117 601 9.25e-57 199
MS.gene038982.t1 AT1G31950 28.676 408 274 6 2 398 108 509 1.31e-56 197
MS.gene038982.t1 AT3G29110 29.289 478 332 5 16 487 113 590 3.92e-56 197
MS.gene038982.t1 AT5G44630 28.719 484 337 6 16 492 73 555 4.67e-55 193
MS.gene038982.t1 AT3G14540 27.990 418 276 6 1 403 101 508 2.26e-53 188
MS.gene038982.t1 AT4G20200 28.221 489 337 7 16 494 120 604 1.09e-51 185
MS.gene038982.t1 AT4G20230 27.273 473 337 6 22 487 126 598 7.79e-51 183
MS.gene038982.t1 AT4G20230 27.273 473 337 6 22 487 138 610 8.80e-51 183
MS.gene038982.t1 AT4G20210 26.501 483 349 5 18 494 118 600 3.72e-50 181
MS.gene038982.t1 AT1G66020 28.398 493 331 10 16 494 114 598 6.65e-49 177
MS.gene038982.t1 AT1G48800 27.893 484 334 8 15 487 120 599 3.94e-47 172
MS.gene038982.t1 AT4G13300 26.186 485 350 7 15 492 69 552 5.67e-47 171
MS.gene038982.t1 AT1G48820 28.138 494 311 10 2 489 104 559 2.23e-45 167
MS.gene038982.t1 AT4G13280 26.151 478 343 8 25 494 79 554 7.89e-45 166
MS.gene038982.t1 AT2G23230 26.210 496 356 6 1 487 99 593 1.08e-43 163
MS.gene038982.t1 AT2G23230 26.358 497 349 7 1 487 99 588 1.39e-43 163
MS.gene038982.t1 AT1G79460 27.096 513 337 12 12 494 274 779 1.85e-43 164
MS.gene038982.t1 AT5G48110 28.655 342 238 6 155 494 2 339 6.49e-41 150
MS.gene038982.t1 AT4G13280 25.314 478 317 10 25 494 79 524 3.16e-37 144
MS.gene038982.t1 AT1G66020 31.741 293 190 6 16 303 114 401 1.69e-36 140
MS.gene038982.t1 AT1G61120 30.000 440 272 14 9 423 282 710 1.46e-34 138
MS.gene038982.t1 AT4G02780 31.179 263 148 6 16 247 335 595 6.63e-23 103

Find 76 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACTTGAATTTGCTAAAT+TGG 0.149491 2.1:+31204353 MS.gene038982:CDS
CCCTAATTTCATTATTAAAA+TGG 0.155653 2.1:-31203742 None:intergenic
GCAATTCGATTCTGAATTTC+AGG 0.188613 2.1:-31206080 None:intergenic
ATTTGAAGATGAACCTATAT+TGG 0.220192 2.1:+31204152 MS.gene038982:CDS
ATACGTTCTTATCTTCATTT+TGG 0.245554 2.1:-31204221 None:intergenic
ATCATCAATGATGGTAATTA+AGG 0.253672 2.1:-31205030 None:intergenic
GATTCCACATTCATTCAAAA+TGG 0.278555 2.1:+31205644 MS.gene038982:CDS
TAATGAAATTAGGGACATAT+TGG 0.284373 2.1:+31203751 MS.gene038982:CDS
TTTCGTAAATATTTAAAATC+TGG 0.312383 2.1:-31204987 None:intergenic
CAATGCTACATGAATGAAAC+TGG 0.341142 2.1:+31205879 MS.gene038982:CDS
ATGTATACTTAAGGTCTTCT+TGG 0.346794 2.1:-31204401 None:intergenic
TCTCTTGCTTCATCCAATAT+AGG 0.348986 2.1:-31204165 None:intergenic
GATTCTGAATTTCAGGATCT+TGG 0.349688 2.1:-31206073 None:intergenic
GATTGGTTGAGAACTTTGTT+TGG 0.376926 2.1:+31204943 MS.gene038982:CDS
TTTGTACATACAATAGGAAT+AGG 0.380424 2.1:-31206119 None:intergenic
ACTTCAAATAAGTCATGCTT+TGG 0.381812 2.1:+31204245 MS.gene038982:CDS
TTTGGAACATCCACTGCATT+GGG 0.391831 2.1:+31204263 MS.gene038982:CDS
ATGCTTTGCAAGGGATAGAT+TGG 0.394984 2.1:+31204926 MS.gene038982:CDS
TAAGCATGAGTAAGTATAGT+AGG 0.415253 2.1:-31205615 None:intergenic
GAAATTTGTAATTTCAAGAA+AGG 0.419193 2.1:+31204075 MS.gene038982:CDS
TTTGTAATTTCAAGAAAGGT+AGG 0.421777 2.1:+31204079 MS.gene038982:CDS
TCTTCACAAAAGCAGTTGAT+AGG 0.429846 2.1:+31205090 MS.gene038982:CDS
TTTCAGGATCTTGGTTGGTA+TGG 0.431471 2.1:-31206064 None:intergenic
AGCACCTTGATGTATACTTA+AGG 0.432930 2.1:-31204410 None:intergenic
TGCTGTAAATCTTGCTAGAA+TGG 0.435206 2.1:+31206013 MS.gene038982:CDS
GGTAGGTTTGTTGACGTTGA+GGG 0.440364 2.1:+31204096 MS.gene038982:CDS
ATGTAGCATTGAATTGACTT+TGG 0.445177 2.1:-31205867 None:intergenic
TGCTGAAAGTCTAATTATGT+TGG 0.450285 2.1:-31205694 None:intergenic
CTTTGGAACATCCACTGCAT+TGG 0.453996 2.1:+31204262 MS.gene038982:CDS
GAGTCCCTCGATGGGAGGCT+AGG 0.467693 2.1:+31204286 MS.gene038982:CDS
AAGTATAGTAGGTGCACCTA+TGG 0.470676 2.1:-31205604 None:intergenic
GAGAAAATTTATGCTTTGCA+AGG 0.471171 2.1:+31204916 MS.gene038982:CDS
GGCTTGGTGTGTATCCACTA+TGG 0.480255 2.1:-31205551 None:intergenic
CTGAATTTCAGGATCTTGGT+TGG 0.483854 2.1:-31206069 None:intergenic
ATTGATGTATTGCAAAGGCT+TGG 0.488943 2.1:+31203710 MS.gene038982:CDS
TCTATGTATTCTCCAAGGCT+TGG 0.489111 2.1:-31205567 None:intergenic
AAGAATGATGCTTAACAAAA+CGG 0.497193 2.1:+31203661 None:intergenic
TTCATTCAAAATGGAAGACT+TGG 0.497580 2.1:+31205653 MS.gene038982:CDS
TGCATTGGGGAGTCCCTCGA+TGG 0.509350 2.1:+31204277 MS.gene038982:CDS
AGGTAGGTTTGTTGACGTTG+AGG 0.522510 2.1:+31204095 MS.gene038982:CDS
TTTATGTATCATCGAGGAGA+TGG 0.528446 2.1:+31206041 MS.gene038982:CDS
AGAAAATTTATGCTTTGCAA+GGG 0.529039 2.1:+31204917 MS.gene038982:CDS
GAGAACTTTGTTTGGACTGT+GGG 0.531644 2.1:+31204951 MS.gene038982:CDS
AGTGGATACACACCAAGCCT+TGG 0.533055 2.1:+31205555 MS.gene038982:CDS
CATATTTGATTGAAGCAAAG+TGG 0.534124 2.1:+31205526 MS.gene038982:CDS
CATGGTTATGATATATCACC+AGG 0.538113 2.1:+31203854 MS.gene038982:CDS
GAGAATACATAGAGAATGCA+TGG 0.541704 2.1:+31205577 MS.gene038982:CDS
AACTGGAGCTTCTGAAGTTG+AGG 0.542366 2.1:+31205896 MS.gene038982:CDS
CTTCCACTCTATAAACATCA+TGG 0.551044 2.1:-31205937 None:intergenic
TGGTGGAAAAGAACTAAACT+TGG 0.552083 2.1:+31204894 MS.gene038982:CDS
ATCGTACACATCATCAATGA+TGG 0.554157 2.1:-31205039 None:intergenic
TTACGCCTTGCTAATGACCT+CGG 0.563093 2.1:+31205723 MS.gene038982:CDS
GATGATGTGTACGATGTGTA+TGG 0.566503 2.1:+31205047 MS.gene038982:CDS
TTCAGACTCTTGAGGCAACA+TGG 0.576372 2.1:+31203836 MS.gene038982:CDS
AGTCCATGATGTTTATAGAG+TGG 0.576983 2.1:+31205934 MS.gene038982:CDS
CATTCTCTATGTATTCTCCA+AGG 0.581762 2.1:-31205572 None:intergenic
TAGATGGGATCTAAATGCCA+TGG 0.583752 2.1:+31205210 MS.gene038982:intron
GAGAATGCATGGATATCCAT+AGG 0.583758 2.1:+31205588 MS.gene038982:CDS
GTAGTTTGGGAGAGAATCCA+TGG 0.590044 2.1:-31205227 None:intergenic
AACTTACTTTATATGTTCCG+AGG 0.590775 2.1:-31205740 None:intergenic
ACCACCTAGCCTCCCATCGA+GGG 0.602909 2.1:-31204290 None:intergenic
AGTTTATTGATGTATTGCAA+AGG 0.603533 2.1:+31203705 MS.gene038982:CDS
GCATTGGGGAGTCCCTCGAT+GGG 0.605686 2.1:+31204278 MS.gene038982:CDS
CGAGGGACTCCCCAATGCAG+TGG 0.607874 2.1:-31204273 None:intergenic
ATGTTCCGAGGTCATTAGCA+AGG 0.610811 2.1:-31205728 None:intergenic
TTTACGAAAAGTTATGACAA+AGG 0.613165 2.1:+31205001 MS.gene038982:CDS
GAAGCAAAGTGGTACCATAG+TGG 0.615723 2.1:+31205537 MS.gene038982:CDS
TTGGGGAGTCCCTCGATGGG+AGG 0.619853 2.1:+31204281 MS.gene038982:CDS
AAGACCTTAAGTATACATCA+AGG 0.621822 2.1:+31204406 MS.gene038982:CDS
TCCCTCGATGGGAGGCTAGG+TGG 0.625455 2.1:+31204289 MS.gene038982:CDS
TGAGAACTTTGTTTGGACTG+TGG 0.632658 2.1:+31204950 MS.gene038982:CDS
TTGGAACATCCACTGCATTG+GGG 0.645337 2.1:+31204264 MS.gene038982:CDS
CACTTGAGTTCAGACTCTTG+AGG 0.649831 2.1:+31203828 MS.gene038982:CDS
AACCACCTAGCCTCCCATCG+AGG 0.678896 2.1:-31204291 None:intergenic
GTACGATGTGTATGGCACAT+TGG 0.688383 2.1:+31205055 MS.gene038982:CDS
GCATTGTTTATGTATCATCG+AGG 0.735309 2.1:+31206035 MS.gene038982:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATAATAATTTTTATTA+TGG - chr2.1:31204546-31204565 None:intergenic 0.0%
!!! TACAAATTAACAATAATTTT+CGG - chr2.1:31203999-31204018 None:intergenic 10.0%
!! AACAATTAGTGAAAAATTTA+AGG - chr2.1:31205804-31205823 None:intergenic 15.0%
!! ATTGTAATCATTATTATTAG+TGG + chr2.1:31205380-31205399 MS.gene038982:intron 15.0%
!! TTGTAATCATTATTATTAGT+GGG + chr2.1:31205381-31205400 MS.gene038982:intron 15.0%
!!! ACCATTTTAATAATGAAATT+AGG + chr2.1:31203741-31203760 MS.gene038982:CDS 15.0%
!!! CCATTTTAATAATGAAATTA+GGG + chr2.1:31203742-31203761 MS.gene038982:CDS 15.0%
!!! TATAAAAATCTACTTTTTAC+TGG - chr2.1:31204592-31204611 None:intergenic 15.0%
!!! TTTCGTAAATATTTAAAATC+TGG - chr2.1:31204990-31205009 None:intergenic 15.0%
!! CAATAAAATTAAGCATTAGT+CGG - chr2.1:31204860-31204879 None:intergenic 20.0%
!! CCCTAATTTCATTATTAAAA+TGG - chr2.1:31203745-31203764 None:intergenic 20.0%
!! GAAATTTGTAATTTCAAGAA+AGG + chr2.1:31204075-31204094 MS.gene038982:CDS 20.0%
!!! AGAAAACTTTTCAAATAAAG+TGG - chr2.1:31205150-31205169 None:intergenic 20.0%
!!! GACTAATGCTTAATTTTATT+GGG + chr2.1:31204859-31204878 MS.gene038982:intron 20.0%
!!! TAATATATGCTTCCAAATTT+TGG - chr2.1:31203974-31203993 None:intergenic 20.0%
!!! TAATGTTTTGTACATACAAT+AGG - chr2.1:31206128-31206147 None:intergenic 20.0%
!!! TTCTAAAATTCGATAACAAA+TGG + chr2.1:31204650-31204669 MS.gene038982:intron 20.0%
!!! TTTACTTGAATTTGCTAAAT+TGG + chr2.1:31204353-31204372 MS.gene038982:CDS 20.0%
! AGAAAATTTATGCTTTGCAA+GGG + chr2.1:31204917-31204936 MS.gene038982:CDS 25.0%
! AGTTTATTGATGTATTGCAA+AGG + chr2.1:31203705-31203724 MS.gene038982:CDS 25.0%
! ATCATCAATGATGGTAATTA+AGG - chr2.1:31205033-31205052 None:intergenic 25.0%
! ATTTGAAGATGAACCTATAT+TGG + chr2.1:31204152-31204171 MS.gene038982:CDS 25.0%
! CAAATGGAAAAACATTTCTA+AGG + chr2.1:31204666-31204685 MS.gene038982:intron 25.0%
! TAATGAAATTAGGGACATAT+TGG + chr2.1:31203751-31203770 MS.gene038982:CDS 25.0%
! TGAACATGTAATGTTTATCA+AGG - chr2.1:31204457-31204476 None:intergenic 25.0%
! TTATTGGGTATATTTGAAGA+TGG + chr2.1:31204874-31204893 MS.gene038982:intron 25.0%
! TTCTTATATATTCAATGACC+TGG - chr2.1:31203875-31203894 None:intergenic 25.0%
! TTTACGAAAAGTTATGACAA+AGG + chr2.1:31205001-31205020 MS.gene038982:CDS 25.0%
! TTTGTAATTTCAAGAAAGGT+AGG + chr2.1:31204079-31204098 MS.gene038982:CDS 25.0%
! TTTGTACATACAATAGGAAT+AGG - chr2.1:31206122-31206141 None:intergenic 25.0%
!! AAACTTTTCAAATAAAGTGG+AGG - chr2.1:31205147-31205166 None:intergenic 25.0%
!! AAGCATATTTTCATGTAGTT+TGG - chr2.1:31205244-31205263 None:intergenic 25.0%
!! AGCATATTTTCATGTAGTTT+GGG - chr2.1:31205243-31205262 None:intergenic 25.0%
!! ATACGTTCTTATCTTCATTT+TGG - chr2.1:31204224-31204243 None:intergenic 25.0%
!! CGACTAATGCTTAATTTTAT+TGG + chr2.1:31204858-31204877 MS.gene038982:intron 25.0%
!! GATTTTTGATATCTTTACGA+CGG + chr2.1:31203930-31203949 MS.gene038982:intron 25.0%
!! TTTGAAACTTTGAAAAAGTG+TGG + chr2.1:31205298-31205317 MS.gene038982:CDS 25.0%
!!! ATTTTGTTGATGATTCTAGA+TGG + chr2.1:31205194-31205213 MS.gene038982:intron 25.0%
!!! TTTTGTTGATGATTCTAGAT+GGG + chr2.1:31205195-31205214 MS.gene038982:intron 25.0%
AAATTTAGTTGCTCACTTGT+AGG + chr2.1:31204805-31204824 MS.gene038982:intron 30.0%
AACTTACTTTATATGTTCCG+AGG - chr2.1:31205743-31205762 None:intergenic 30.0%
AAGACCTTAAGTATACATCA+AGG + chr2.1:31204406-31204425 MS.gene038982:CDS 30.0%
ACTTCAAATAAGTCATGCTT+TGG + chr2.1:31204245-31204264 MS.gene038982:CDS 30.0%
AGGTTGAATAGACCAAAATT+TGG + chr2.1:31203959-31203978 MS.gene038982:intron 30.0%
ATGTATACTTAAGGTCTTCT+TGG - chr2.1:31204404-31204423 None:intergenic 30.0%
CATATTTGATTGAAGCAAAG+TGG + chr2.1:31205526-31205545 MS.gene038982:CDS 30.0%
GAGAAAATTTATGCTTTGCA+AGG + chr2.1:31204916-31204935 MS.gene038982:CDS 30.0%
GATTCCACATTCATTCAAAA+TGG + chr2.1:31205644-31205663 MS.gene038982:CDS 30.0%
TAAGCATGAGTAAGTATAGT+AGG - chr2.1:31205618-31205637 None:intergenic 30.0%
TGCTGAAAGTCTAATTATGT+TGG - chr2.1:31205697-31205716 None:intergenic 30.0%
TTCATTCAAAATGGAAGACT+TGG + chr2.1:31205653-31205672 MS.gene038982:CDS 30.0%
! ATGTAGCATTGAATTGACTT+TGG - chr2.1:31205870-31205889 None:intergenic 30.0%
! GTTCTTTTTGCTTCTCTAAA+CGG + chr2.1:31205760-31205779 MS.gene038982:intron 30.0%
! TCTTCCATTTTGAATGAATG+TGG - chr2.1:31205651-31205670 None:intergenic 30.0%
! TTTAAAGCGTGAAAAAGAGA+CGG + chr2.1:31205836-31205855 MS.gene038982:intron 30.0%
!!! CTCTTTTTCACGCTTTAAAA+AGG - chr2.1:31205835-31205854 None:intergenic 30.0%
!!! TAATGCTTACCGCTTTTTTT+AGG - chr2.1:31205342-31205361 None:intergenic 30.0%
!!! TTTTTAGGTATGGAGTGATA+TGG - chr2.1:31205327-31205346 None:intergenic 30.0%
AAGGAACTGATACTTGAAGT+TGG - chr2.1:31204438-31204457 None:intergenic 35.0%
AGCACCTTGATGTATACTTA+AGG - chr2.1:31204413-31204432 None:intergenic 35.0%
AGTCCATGATGTTTATAGAG+TGG + chr2.1:31205934-31205953 MS.gene038982:CDS 35.0%
ATCGTACACATCATCAATGA+TGG - chr2.1:31205042-31205061 None:intergenic 35.0%
ATTGATGTATTGCAAAGGCT+TGG + chr2.1:31203710-31203729 MS.gene038982:CDS 35.0%
CAATGCTACATGAATGAAAC+TGG + chr2.1:31205879-31205898 MS.gene038982:CDS 35.0%
CACTCCATACCTAAAAAAAG+CGG + chr2.1:31205330-31205349 MS.gene038982:CDS 35.0%
CATGGTTATGATATATCACC+AGG + chr2.1:31203854-31203873 MS.gene038982:CDS 35.0%
CATTCTCTATGTATTCTCCA+AGG - chr2.1:31205575-31205594 None:intergenic 35.0%
CTTCCACTCTATAAACATCA+TGG - chr2.1:31205940-31205959 None:intergenic 35.0%
GAGAATACATAGAGAATGCA+TGG + chr2.1:31205577-31205596 MS.gene038982:CDS 35.0%
GATTCTGAATTTCAGGATCT+TGG - chr2.1:31206076-31206095 None:intergenic 35.0%
GCAATTCGATTCTGAATTTC+AGG - chr2.1:31206083-31206102 None:intergenic 35.0%
GCATTGTTTATGTATCATCG+AGG + chr2.1:31206035-31206054 MS.gene038982:CDS 35.0%
TCTCTTGCTTCATCCAATAT+AGG - chr2.1:31204168-31204187 None:intergenic 35.0%
TCTTCACAAAAGCAGTTGAT+AGG + chr2.1:31205090-31205109 MS.gene038982:CDS 35.0%
TGCTGTAAATCTTGCTAGAA+TGG + chr2.1:31206013-31206032 MS.gene038982:CDS 35.0%
TGGTGGAAAAGAACTAAACT+TGG + chr2.1:31204894-31204913 MS.gene038982:CDS 35.0%
TTAAAGCGTGAAAAAGAGAC+GGG + chr2.1:31205837-31205856 MS.gene038982:intron 35.0%
TTGCGACTTAATGATAGTTG+TGG - chr2.1:31203904-31203923 None:intergenic 35.0%
TTGGGTATATTTGAAGATGG+TGG + chr2.1:31204877-31204896 MS.gene038982:intron 35.0%
TTTATGTATCATCGAGGAGA+TGG + chr2.1:31206041-31206060 MS.gene038982:CDS 35.0%
! GATTGGTTGAGAACTTTGTT+TGG + chr2.1:31204943-31204962 MS.gene038982:CDS 35.0%
!!! CTTACCGCTTTTTTTAGGTA+TGG - chr2.1:31205337-31205356 None:intergenic 35.0%
AAGTATAGTAGGTGCACCTA+TGG - chr2.1:31205607-31205626 None:intergenic 40.0%
ATGCTTTGCAAGGGATAGAT+TGG + chr2.1:31204926-31204945 MS.gene038982:CDS 40.0%
CTGAATTTCAGGATCTTGGT+TGG - chr2.1:31206072-31206091 None:intergenic 40.0%
GAGAATGCATGGATATCCAT+AGG + chr2.1:31205588-31205607 MS.gene038982:CDS 40.0%
GATGATGTGTACGATGTGTA+TGG + chr2.1:31205047-31205066 MS.gene038982:CDS 40.0%
TAGATGGGATCTAAATGCCA+TGG + chr2.1:31205210-31205229 MS.gene038982:intron 40.0%
TATCTTTACGACGGTGATTG+AGG + chr2.1:31203939-31203958 MS.gene038982:intron 40.0%
TCTATGTATTCTCCAAGGCT+TGG - chr2.1:31205570-31205589 None:intergenic 40.0%
! GAGAACTTTGTTTGGACTGT+GGG + chr2.1:31204951-31204970 MS.gene038982:CDS 40.0%
! TGAGAACTTTGTTTGGACTG+TGG + chr2.1:31204950-31204969 MS.gene038982:CDS 40.0%
! TTTCAGGATCTTGGTTGGTA+TGG - chr2.1:31206067-31206086 None:intergenic 40.0%
! TTTGGAACATCCACTGCATT+GGG + chr2.1:31204263-31204282 MS.gene038982:CDS 40.0%
ATGTTCCGAGGTCATTAGCA+AGG - chr2.1:31205731-31205750 None:intergenic 45.0%
CACTTGAGTTCAGACTCTTG+AGG + chr2.1:31203828-31203847 MS.gene038982:CDS 45.0%
GAAGCAAAGTGGTACCATAG+TGG + chr2.1:31205537-31205556 MS.gene038982:CDS 45.0%
GTACGATGTGTATGGCACAT+TGG + chr2.1:31205055-31205074 MS.gene038982:CDS 45.0%
GTAGTTTGGGAGAGAATCCA+TGG - chr2.1:31205230-31205249 None:intergenic 45.0%
TTACGCCTTGCTAATGACCT+CGG + chr2.1:31205723-31205742 MS.gene038982:CDS 45.0%
TTCAGACTCTTGAGGCAACA+TGG + chr2.1:31203836-31203855 MS.gene038982:CDS 45.0%
TTGGAACATCCACTGCATTG+GGG + chr2.1:31204264-31204283 MS.gene038982:CDS 45.0%
!! AACTGGAGCTTCTGAAGTTG+AGG + chr2.1:31205896-31205915 MS.gene038982:CDS 45.0%
!! AGGTAGGTTTGTTGACGTTG+AGG + chr2.1:31204095-31204114 MS.gene038982:CDS 45.0%
!! CTTTGGAACATCCACTGCAT+TGG + chr2.1:31204262-31204281 MS.gene038982:CDS 45.0%
!! GGTAGGTTTGTTGACGTTGA+GGG + chr2.1:31204096-31204115 MS.gene038982:CDS 45.0%
!!! ATTATTATTATTTTAATAGT+GGG + chr2.1:31205488-31205507 MS.gene038982:intron 5.0%
!!! TATTATTATTATTTTAATAG+TGG + chr2.1:31205487-31205506 MS.gene038982:intron 5.0%
AGTGGATACACACCAAGCCT+TGG + chr2.1:31205555-31205574 MS.gene038982:CDS 50.0%
!! GGCTTGGTGTGTATCCACTA+TGG - chr2.1:31205554-31205573 None:intergenic 50.0%
AACCACCTAGCCTCCCATCG+AGG - chr2.1:31204294-31204313 None:intergenic 60.0%
ACCACCTAGCCTCCCATCGA+GGG - chr2.1:31204293-31204312 None:intergenic 60.0%
GCATTGGGGAGTCCCTCGAT+GGG + chr2.1:31204278-31204297 MS.gene038982:CDS 60.0%
TGCATTGGGGAGTCCCTCGA+TGG + chr2.1:31204277-31204296 MS.gene038982:CDS 60.0%
CGAGGGACTCCCCAATGCAG+TGG - chr2.1:31204276-31204295 None:intergenic 65.0%
GAGTCCCTCGATGGGAGGCT+AGG + chr2.1:31204286-31204305 MS.gene038982:CDS 65.0%
TCCCTCGATGGGAGGCTAGG+TGG + chr2.1:31204289-31204308 MS.gene038982:CDS 65.0%
TTGGGGAGTCCCTCGATGGG+AGG + chr2.1:31204281-31204300 MS.gene038982:CDS 65.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 31203665 31206148 31203665 ID=MS.gene038982
chr2.1 mRNA 31203665 31206148 31203665 ID=MS.gene038982.t1;Parent=MS.gene038982
chr2.1 exon 31203665 31203875 31203665 ID=MS.gene038982.t1.exon1;Parent=MS.gene038982.t1
chr2.1 CDS 31203665 31203875 31203665 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
chr2.1 exon 31204052 31204427 31204052 ID=MS.gene038982.t1.exon2;Parent=MS.gene038982.t1
chr2.1 CDS 31204052 31204427 31204052 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
chr2.1 exon 31204893 31205111 31204893 ID=MS.gene038982.t1.exon3;Parent=MS.gene038982.t1
chr2.1 CDS 31204893 31205111 31204893 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
chr2.1 exon 31205213 31205351 31205213 ID=MS.gene038982.t1.exon4;Parent=MS.gene038982.t1
chr2.1 CDS 31205213 31205351 31205213 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
chr2.1 exon 31205507 31205755 31205507 ID=MS.gene038982.t1.exon5;Parent=MS.gene038982.t1
chr2.1 CDS 31205507 31205755 31205507 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
chr2.1 exon 31205843 31206148 31205843 ID=MS.gene038982.t1.exon6;Parent=MS.gene038982.t1
chr2.1 CDS 31205843 31206148 31205843 ID=cds.MS.gene038982.t1;Parent=MS.gene038982.t1
Gene Sequence

>MS.gene038982

ATGATGCTTAACAAAACGGAAAATGAGCTTGATCAACTTGAGTTTATTGATGTATTGCAAAGGCTTGGAGTGTCATACCATTTTAATAATGAAATTAGGGACATATTGGATAACATTTACAACAAACAATCATTCAAGTTGAAGAAGAATTTACATGCGACAGCACTTGAGTTCAGACTCTTGAGGCAACATGGTTATGATATATCACCAGGTCATTGAATATATAAGAAAAAGCTCCACAACTATCATTAAGTCGCAAAATTAAGATTTTTGATATCTTTACGACGGTGATTGAGGTTGAATAGACCAAAATTTGGAAGCATATATTACTCCGAAAATTATTGTTAATTTGTATATTAATTTATATTATATAATTATTTGTTGCAGATGTTTTTGTTTGCTTTGAAGATGAAATTTGTAATTTCAAGAAAGGTAGGTTTGTTGACGTTGAGGGAATGTTATCATTGTATGAAGCATCGTTTCATTCATTTGAAGATGAACCTATATTGGATGAAGCAAGAGATGTCACATCAAAGTTTCTCAAAGAATTTTTCGACCAAAATGAAGATAAGAACGTATCACTTCAAATAAGTCATGCTTTGGAACATCCACTGCATTGGGGAGTCCCTCGATGGGAGGCTAGGTGGTTCATTGATATATACGAAAGACAACAAAATAAGAATCATGTTTTACTTGAATTTGCTAAATTGGATTTCAACATTCTTCAAAGCTTCTACCAAGAAGACCTTAAGTATACATCAAGGTGCTAACCAACTTCAAGTATCAGTTCCTTGATAAACATTACATGTTCACGTTGTAGTGTCTAACTTTTAGAGATTTTTTTCTAAGAAAAAAAACAGAAATTTTGTGTTTTTTTACCATAATAAAAATTATTATTTTAGAAAAAGATTTATTGAAACTGAACCAGTAAAAAGTAGATTTTTATATAAAGAAATTTTATATTTTCTTCTTCATATTTTTATTTTTCTAAAATTCGATAACAAATGGAAAAACATTTCTAAGGTTGATTAATTATTTTAAAAAAATTATTTTATTAATTTAAATAGTGATTATTTAATTAAAATTATATTTTAAACTAGCTTATTACTTAAAATTTTAACATAATGAATAGTAAATAAAAAATTTAGTTGCTCACTTGTAGGTATACTAGAGATTGAGATAGATGATACTTCCGACTAATGCTTAATTTTATTGGGTATATTTGAAGATGGTGGAAAAGAACTAAACTTGGAGAAAATTTATGCTTTGCAAGGGATAGATTGGTTGAGAACTTTGTTTGGACTGTGGGAACAAATTTCAAACCAGATTTTAAATATTTACGAAAAGTTATGACAAAGGTCAATTCCTTAATTACCATCATTGATGATGTGTACGATGTGTATGGCACATTGGAAGAACTAGAGCTCTTCACAAAAGCAGTTGATAGGTAATTCTTGTTCAATAATTTGTTTTTTACTTCCTCCACTTTATTTGAAAAGTTTTCTTGTTATTAGTGAATAATTATCAATATTTTGTTGATGATTCTAGATGGGATCTAAATGCCATGGATTCTCTCCCAAACTACATGAAAATATGCTTTCATGCACTCTATAACTTTGTGAGTGAACTTGCTTTTGAAACTTTGAAAAAGTGTGGCTACCATATCACTCCATACCTAAAAAAAGCGGTAAGCATTATCATTATCATCATCATTCATTGTAATCATTATTATTAGTGGGCTATTTAGCTTCTTCAAAAAAAAAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTAATAGTGGGCAGATCTATGTAAATCATATTTGATTGAAGCAAAGTGGTACCATAGTGGATACACACCAAGCCTTGGAGAATACATAGAGAATGCATGGATATCCATAGGTGCACCTACTATACTTACTCATGCTTACTTTGTGATTCCACATTCATTCAAAATGGAAGACTTGGTTAGTTTAGAAGAAAACTCCAACATAATTAGACTTTCAGCAATAATTTTACGCCTTGCTAATGACCTCGGAACATATAAAGTAAGTTCTTTTTGCTTCTCTAAACGGACTAAAAATGCAATTAAACCTTAAATTTTTCACTAATTGTTTTGCTTTTCCTTTTTAAAGCGTGAAAAAGAGACGGGTGATATTCCAAAGTCAATTCAATGCTACATGAATGAAACTGGAGCTTCTGAAGTTGAGGCTTGTGAGTATGTTAAGTCCATGATGTTTATAGAGTGGAAGAAGTTGAATAAAGAAGCTCATAGTTCATCTTTCTCTCAATATTTCATAGATACTGCTGTAAATCTTGCTAGAATGGCATTGTTTATGTATCATCGAGGAGATGGCCATACCAACCAAGATCCTGAAATTCAGAATCGAATTGCATCATTAGTTTTTCAGCCTATTCCTATTGTATGTACAAAACATTAA
Protein sequence

>MS.gene038982.t1

MMLNKTENELDQLEFIDVLQRLGVSYHFNNEIRDILDNIYNKQSFKLKKNLHATALEFRLLRQHGYDISPDVFVCFEDEICNFKKGRFVDVEGMLSLYEASFHSFEDEPILDEARDVTSKFLKEFFDQNEDKNVSLQISHALEHPLHWGVPRWEARWFIDIYERQQNKNHVLLEFAKLDFNILQSFYQEDLKYTSRWWKRTKLGENLCFARDRLVENFVWTVGTNFKPDFKYLRKVMTKVNSLITIIDDVYDVYGTLEELELFTKAVDRWDLNAMDSLPNYMKICFHALYNFVSELAFETLKKCGYHITPYLKKAWADLCKSYLIEAKWYHSGYTPSLGEYIENAWISIGAPTILTHAYFVIPHSFKMEDLVSLEENSNIIRLSAIILRLANDLGTYKREKETGDIPKSIQCYMNETGASEVEACEYVKSMMFIEWKKLNKEAHSSSFSQYFIDTAVNLARMALFMYHRGDGHTNQDPEIQNRIASLVFQPIPIVCTKH