Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42723.t1 | XP_003628406.2 | 94.9 | 415 | 21 | 0 | 1 | 415 | 79 | 493 | 6.80E-233 | 816.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42723.t1 | Q93X23 | 52.4 | 410 | 191 | 2 | 7 | 413 | 87 | 495 | 5.4e-122 | 439.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42723.t1 | G7LB17 | 94.9 | 415 | 21 | 0 | 1 | 415 | 79 | 493 | 4.9e-233 | 816.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42723.t1 | MTR_8g057020 | 94.940 | 415 | 21 | 0 | 1 | 415 | 79 | 493 | 0.0 | 830 |
MS.gene42723.t1 | MTR_2g064425 | 69.639 | 415 | 125 | 1 | 1 | 415 | 77 | 490 | 0.0 | 608 |
MS.gene42723.t1 | MTR_2g064425 | 66.747 | 415 | 122 | 2 | 1 | 415 | 77 | 475 | 0.0 | 571 |
MS.gene42723.t1 | MTR_2g065450 | 65.848 | 407 | 137 | 2 | 10 | 415 | 89 | 494 | 0.0 | 570 |
MS.gene42723.t1 | MTR_2g064425 | 71.084 | 332 | 95 | 1 | 1 | 332 | 77 | 407 | 1.68e-173 | 492 |
MS.gene42723.t1 | MTR_2g064425 | 67.470 | 332 | 92 | 2 | 1 | 332 | 77 | 392 | 3.59e-159 | 455 |
MS.gene42723.t1 | MTR_4g045810 | 43.614 | 415 | 225 | 6 | 4 | 413 | 72 | 482 | 4.48e-112 | 340 |
MS.gene42723.t1 | MTR_4g081460 | 39.806 | 412 | 237 | 6 | 10 | 413 | 55 | 463 | 5.12e-92 | 288 |
MS.gene42723.t1 | MTR_6g039440 | 36.650 | 412 | 254 | 4 | 7 | 413 | 45 | 454 | 6.80e-85 | 270 |
MS.gene42723.t1 | MTR_2g089120 | 37.129 | 404 | 248 | 4 | 11 | 413 | 70 | 468 | 1.13e-84 | 269 |
MS.gene42723.t1 | MTR_7g010710 | 36.181 | 398 | 237 | 8 | 26 | 413 | 66 | 456 | 1.10e-83 | 266 |
MS.gene42723.t1 | MTR_8g007515 | 38.129 | 417 | 250 | 5 | 6 | 415 | 44 | 459 | 7.68e-83 | 264 |
MS.gene42723.t1 | MTR_2g089130 | 35.980 | 403 | 253 | 3 | 11 | 413 | 70 | 467 | 3.36e-82 | 263 |
MS.gene42723.t1 | MTR_2g082010 | 37.808 | 365 | 221 | 2 | 7 | 365 | 58 | 422 | 9.92e-82 | 262 |
MS.gene42723.t1 | MTR_2g082060 | 35.897 | 429 | 255 | 7 | 2 | 415 | 44 | 467 | 3.52e-81 | 260 |
MS.gene42723.t1 | MTR_5g062230 | 36.408 | 412 | 255 | 4 | 7 | 413 | 45 | 454 | 8.23e-81 | 259 |
MS.gene42723.t1 | MTR_2g081980 | 34.186 | 430 | 248 | 7 | 7 | 415 | 45 | 460 | 1.09e-80 | 259 |
MS.gene42723.t1 | MTR_3g464190 | 36.867 | 415 | 250 | 7 | 7 | 413 | 48 | 458 | 3.30e-79 | 254 |
MS.gene42723.t1 | MTR_4g048460 | 37.440 | 414 | 248 | 7 | 7 | 413 | 53 | 462 | 1.84e-78 | 250 |
MS.gene42723.t1 | MTR_6g008560 | 34.634 | 410 | 260 | 4 | 7 | 410 | 48 | 455 | 6.00e-78 | 251 |
MS.gene42723.t1 | MTR_4g048460 | 37.440 | 414 | 248 | 7 | 7 | 413 | 53 | 462 | 1.77e-77 | 250 |
MS.gene42723.t1 | MTR_5g073200 | 37.108 | 415 | 249 | 7 | 7 | 413 | 40 | 450 | 2.58e-76 | 247 |
MS.gene42723.t1 | MTR_5g073260 | 36.754 | 419 | 250 | 6 | 1 | 413 | 44 | 453 | 7.03e-75 | 243 |
MS.gene42723.t1 | MTR_5g094620 | 35.381 | 407 | 243 | 6 | 9 | 413 | 50 | 438 | 9.34e-75 | 243 |
MS.gene42723.t1 | MTR_4g092010 | 32.763 | 409 | 263 | 6 | 9 | 410 | 57 | 460 | 9.14e-73 | 238 |
MS.gene42723.t1 | MTR_4g092020 | 35.013 | 397 | 246 | 6 | 23 | 413 | 81 | 471 | 3.30e-69 | 229 |
MS.gene42723.t1 | MTR_4g019550 | 37.299 | 311 | 189 | 2 | 7 | 311 | 53 | 363 | 1.66e-64 | 216 |
MS.gene42723.t1 | MTR_6g064980 | 30.404 | 421 | 276 | 8 | 7 | 415 | 7 | 422 | 1.99e-60 | 204 |
MS.gene42723.t1 | MTR_3g052120 | 30.332 | 422 | 275 | 7 | 7 | 415 | 7 | 422 | 5.21e-60 | 203 |
MS.gene42723.t1 | MTR_2g010960 | 29.594 | 419 | 278 | 5 | 9 | 415 | 13 | 426 | 2.81e-59 | 201 |
MS.gene42723.t1 | MTR_3g063170 | 28.947 | 418 | 286 | 6 | 7 | 415 | 7 | 422 | 3.61e-59 | 201 |
MS.gene42723.t1 | MTR_3g063120 | 30.597 | 402 | 263 | 6 | 26 | 415 | 1 | 398 | 1.27e-58 | 199 |
MS.gene42723.t1 | MTR_3g465090 | 29.567 | 416 | 276 | 8 | 7 | 410 | 7 | 417 | 4.49e-58 | 198 |
MS.gene42723.t1 | MTR_3g063140 | 29.454 | 421 | 280 | 8 | 7 | 415 | 7 | 422 | 2.60e-57 | 196 |
MS.gene42723.t1 | MTR_6g008560 | 34.884 | 301 | 194 | 2 | 110 | 410 | 1 | 299 | 3.86e-57 | 193 |
MS.gene42723.t1 | MTR_2g082050 | 30.583 | 412 | 230 | 5 | 7 | 415 | 4 | 362 | 4.29e-54 | 186 |
MS.gene42723.t1 | MTR_6g065040 | 31.464 | 321 | 214 | 5 | 99 | 415 | 2 | 320 | 8.18e-49 | 171 |
MS.gene42723.t1 | MTR_2g012870 | 28.784 | 403 | 260 | 8 | 35 | 415 | 261 | 658 | 8.62e-38 | 145 |
MS.gene42723.t1 | MTR_2g064295 | 26.506 | 415 | 272 | 11 | 28 | 415 | 256 | 664 | 1.14e-34 | 136 |
MS.gene42723.t1 | MTR_3g058160 | 26.555 | 418 | 268 | 14 | 28 | 415 | 65 | 473 | 1.16e-33 | 132 |
MS.gene42723.t1 | MTR_3g058160 | 27.014 | 422 | 261 | 15 | 28 | 415 | 269 | 677 | 3.78e-33 | 132 |
MS.gene42723.t1 | MTR_3g058160 | 26.777 | 422 | 262 | 15 | 28 | 415 | 276 | 684 | 3.89e-33 | 132 |
MS.gene42723.t1 | MTR_3g058160 | 27.014 | 422 | 261 | 15 | 28 | 415 | 256 | 664 | 3.93e-33 | 132 |
MS.gene42723.t1 | MTR_2g012900 | 28.009 | 432 | 268 | 13 | 21 | 415 | 247 | 672 | 1.31e-30 | 124 |
MS.gene42723.t1 | MTR_3g063160 | 26.502 | 283 | 201 | 3 | 7 | 283 | 7 | 288 | 2.48e-30 | 118 |
MS.gene42723.t1 | MTR_3g058160 | 25.285 | 439 | 268 | 14 | 28 | 415 | 276 | 705 | 2.96e-30 | 124 |
MS.gene42723.t1 | MTR_7g050990 | 41.667 | 144 | 75 | 1 | 156 | 299 | 29 | 163 | 6.39e-27 | 114 |
MS.gene42723.t1 | MTR_5g094530 | 30.476 | 210 | 111 | 2 | 124 | 332 | 5 | 180 | 2.35e-24 | 99.8 |
MS.gene42723.t1 | MTR_7g011663 | 28.244 | 262 | 157 | 5 | 31 | 262 | 349 | 609 | 1.71e-21 | 97.4 |
MS.gene42723.t1 | MTR_7g011770 | 27.178 | 287 | 177 | 6 | 32 | 287 | 246 | 531 | 4.82e-21 | 95.9 |
MS.gene42723.t1 | MTR_5g030050 | 24.904 | 261 | 158 | 5 | 32 | 264 | 4 | 254 | 1.16e-18 | 86.7 |
MS.gene42723.t1 | MTR_7g094970 | 24.908 | 273 | 162 | 6 | 32 | 268 | 212 | 477 | 2.00e-18 | 87.8 |
MS.gene42723.t1 | MTR_5g081730 | 45.361 | 97 | 52 | 1 | 116 | 212 | 16 | 111 | 7.41e-18 | 80.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42723.t1 | AT4G16730 | 40.678 | 413 | 235 | 3 | 10 | 413 | 26 | 437 | 6.83e-117 | 352 |
MS.gene42723.t1 | AT2G24210 | 44.203 | 414 | 217 | 8 | 7 | 410 | 76 | 485 | 6.96e-117 | 353 |
MS.gene42723.t1 | AT3G25830 | 43.541 | 418 | 220 | 8 | 8 | 413 | 78 | 491 | 2.45e-116 | 352 |
MS.gene42723.t1 | AT3G25820 | 43.541 | 418 | 220 | 8 | 8 | 413 | 78 | 491 | 2.45e-116 | 352 |
MS.gene42723.t1 | AT4G16730 | 40.561 | 392 | 223 | 3 | 31 | 413 | 1 | 391 | 9.09e-111 | 334 |
MS.gene42723.t1 | AT3G25810 | 41.943 | 422 | 223 | 10 | 8 | 413 | 78 | 493 | 1.92e-104 | 321 |
MS.gene42723.t1 | AT4G16740 | 40.288 | 417 | 226 | 7 | 10 | 413 | 59 | 465 | 1.47e-103 | 318 |
MS.gene42723.t1 | AT3G25820 | 43.175 | 359 | 189 | 7 | 8 | 355 | 78 | 432 | 1.94e-95 | 293 |
MS.gene42723.t1 | AT4G16740 | 40.597 | 335 | 181 | 5 | 10 | 332 | 59 | 387 | 1.29e-82 | 259 |
MS.gene42723.t1 | AT5G23960 | 32.857 | 420 | 274 | 4 | 2 | 415 | 32 | 449 | 6.32e-75 | 243 |
MS.gene42723.t1 | AT5G23960 | 33.175 | 422 | 272 | 5 | 2 | 415 | 32 | 451 | 1.36e-74 | 243 |
MS.gene42723.t1 | AT3G25820 | 42.574 | 303 | 156 | 7 | 8 | 299 | 78 | 373 | 1.55e-74 | 238 |
MS.gene42723.t1 | AT3G25820 | 42.574 | 303 | 156 | 7 | 8 | 299 | 78 | 373 | 1.55e-74 | 238 |
MS.gene42723.t1 | AT1G61680 | 33.995 | 403 | 259 | 5 | 17 | 415 | 82 | 481 | 9.20e-71 | 233 |
MS.gene42723.t1 | AT1G61680 | 34.243 | 403 | 251 | 6 | 17 | 415 | 82 | 474 | 1.90e-70 | 232 |
MS.gene42723.t1 | AT4G16740 | 39.806 | 309 | 169 | 3 | 10 | 306 | 59 | 362 | 1.02e-69 | 225 |
MS.gene42723.t1 | AT4G16740 | 39.806 | 309 | 169 | 3 | 10 | 306 | 59 | 362 | 1.02e-69 | 225 |
MS.gene42723.t1 | AT3G14520 | 31.683 | 404 | 270 | 3 | 17 | 415 | 104 | 506 | 9.46e-65 | 218 |
MS.gene42723.t1 | AT1G31950 | 32.234 | 394 | 261 | 3 | 27 | 415 | 117 | 509 | 1.02e-64 | 216 |
MS.gene42723.t1 | AT1G31950 | 32.234 | 394 | 261 | 3 | 27 | 415 | 116 | 508 | 3.62e-64 | 216 |
MS.gene42723.t1 | AT1G31950 | 32.234 | 394 | 261 | 3 | 27 | 415 | 117 | 509 | 3.69e-64 | 216 |
MS.gene42723.t1 | AT1G70080 | 31.742 | 419 | 275 | 5 | 7 | 415 | 96 | 513 | 1.45e-62 | 212 |
MS.gene42723.t1 | AT3G14540 | 31.188 | 404 | 272 | 3 | 17 | 415 | 101 | 503 | 3.75e-61 | 206 |
MS.gene42723.t1 | AT3G14540 | 31.188 | 404 | 272 | 3 | 17 | 415 | 101 | 503 | 1.75e-60 | 206 |
MS.gene42723.t1 | AT3G29410 | 31.818 | 374 | 250 | 4 | 10 | 379 | 98 | 470 | 2.09e-56 | 196 |
MS.gene42723.t1 | AT3G29410 | 30.874 | 366 | 249 | 3 | 17 | 379 | 1 | 365 | 7.86e-56 | 192 |
MS.gene42723.t1 | AT1G33750 | 30.807 | 409 | 277 | 5 | 11 | 415 | 100 | 506 | 4.28e-55 | 192 |
MS.gene42723.t1 | AT4G15870 | 30.151 | 398 | 261 | 6 | 22 | 415 | 116 | 500 | 5.72e-55 | 192 |
MS.gene42723.t1 | AT3G14490 | 33.884 | 363 | 225 | 6 | 10 | 362 | 94 | 451 | 4.60e-54 | 189 |
MS.gene42723.t1 | AT3G32030 | 29.286 | 420 | 291 | 5 | 1 | 415 | 88 | 506 | 2.84e-53 | 187 |
MS.gene42723.t1 | AT5G44630 | 30.256 | 390 | 264 | 5 | 32 | 415 | 73 | 460 | 2.23e-52 | 184 |
MS.gene42723.t1 | AT3G29110 | 30.848 | 389 | 263 | 5 | 32 | 415 | 113 | 500 | 2.31e-47 | 171 |
MS.gene42723.t1 | AT4G13300 | 27.163 | 416 | 289 | 6 | 10 | 415 | 45 | 456 | 5.05e-47 | 169 |
MS.gene42723.t1 | AT3G29190 | 31.010 | 416 | 274 | 8 | 10 | 415 | 92 | 504 | 2.34e-46 | 168 |
MS.gene42723.t1 | AT4G20210 | 28.321 | 399 | 280 | 5 | 22 | 415 | 106 | 503 | 2.08e-44 | 163 |
MS.gene42723.t1 | AT4G13280 | 28.075 | 374 | 264 | 4 | 41 | 410 | 79 | 451 | 3.43e-44 | 162 |
MS.gene42723.t1 | AT2G23230 | 29.257 | 417 | 281 | 7 | 10 | 415 | 89 | 502 | 4.10e-44 | 162 |
MS.gene42723.t1 | AT2G23230 | 29.157 | 415 | 279 | 8 | 10 | 415 | 89 | 497 | 2.70e-43 | 160 |
MS.gene42723.t1 | AT4G20200 | 27.952 | 415 | 293 | 5 | 6 | 415 | 94 | 507 | 4.91e-43 | 159 |
MS.gene42723.t1 | AT1G48800 | 29.647 | 425 | 271 | 10 | 9 | 415 | 95 | 509 | 2.81e-42 | 157 |
MS.gene42723.t1 | AT4G20230 | 27.676 | 383 | 271 | 5 | 38 | 415 | 126 | 507 | 4.90e-41 | 154 |
MS.gene42723.t1 | AT4G20230 | 27.676 | 383 | 271 | 5 | 38 | 415 | 138 | 519 | 6.64e-41 | 153 |
MS.gene42723.t1 | AT1G48820 | 28.954 | 411 | 249 | 8 | 9 | 415 | 95 | 466 | 2.98e-39 | 148 |
MS.gene42723.t1 | AT4G13280 | 30.124 | 322 | 220 | 4 | 41 | 358 | 79 | 399 | 1.61e-38 | 145 |
MS.gene42723.t1 | AT1G66020 | 27.059 | 425 | 286 | 8 | 10 | 415 | 82 | 501 | 5.71e-37 | 142 |
MS.gene42723.t1 | AT1G66020 | 28.571 | 315 | 206 | 6 | 10 | 309 | 82 | 392 | 6.03e-35 | 134 |
MS.gene42723.t1 | AT1G79460 | 26.265 | 415 | 272 | 11 | 28 | 415 | 274 | 681 | 3.84e-31 | 126 |
MS.gene42723.t1 | AT5G48110 | 29.839 | 248 | 166 | 6 | 171 | 415 | 2 | 244 | 3.59e-30 | 119 |
MS.gene42723.t1 | AT1G61120 | 26.168 | 428 | 262 | 12 | 22 | 415 | 279 | 686 | 4.38e-27 | 114 |
MS.gene42723.t1 | AT4G02780 | 27.547 | 265 | 155 | 7 | 32 | 263 | 335 | 595 | 3.15e-18 | 87.4 |
Find 68 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCTAATTTCTTTGTTAAAA+TGG | 0.095292 | 8.2:-54311700 | None:intergenic |
TTTACTCCAATTCGCTAAAT+TGG | 0.181502 | 8.2:+54312912 | MS.gene42723:CDS |
ATCTCTTGCTTCATCCAATA+TGG | 0.259751 | 8.2:-54312725 | None:intergenic |
CTTTGGATCTTCCATTGAAT+TGG | 0.264293 | 8.2:+54312821 | MS.gene42723:CDS |
ATTCTGAATTGTTCAAAATC+TGG | 0.272530 | 8.2:-54314629 | None:intergenic |
ATGCACACTTTAGTTCTTCT+AGG | 0.272677 | 8.2:-54312960 | None:intergenic |
ATCATCAACTGTGGTAATTA+AGG | 0.283666 | 8.2:-54314672 | None:intergenic |
AAGCATATTTGCATGTAGTA+TGG | 0.312552 | 8.2:-54314865 | None:intergenic |
TGAAATCCAATTTAGCGAAT+TGG | 0.313439 | 8.2:-54312918 | None:intergenic |
GTTTGAAGATGAAACCATAT+TGG | 0.323951 | 8.2:+54312711 | MS.gene42723:CDS |
GCTTGCTTACTGCTTTCTTC+AGG | 0.328404 | 8.2:-54314966 | None:intergenic |
CAAAGAAATTAGGGACATAT+TGG | 0.340628 | 8.2:+54311709 | MS.gene42723:CDS |
TGAAGAGCTCAAGTTCTTCC+AGG | 0.364896 | 8.2:-54314715 | None:intergenic |
ACTTCTAATAAGTCATGCTT+TGG | 0.367158 | 8.2:+54312804 | MS.gene42723:CDS |
CTTACTGCTTTCTTCAGGTA+TGG | 0.378074 | 8.2:-54314961 | None:intergenic |
GATTGGTTGAGAACTTTGTT+TGG | 0.379041 | 8.2:+54314585 | MS.gene42723:CDS |
ATGGAAGACTTGGTTCGTTT+AGG | 0.382342 | 8.2:+54315741 | MS.gene42723:CDS |
GAGCTTTACTAGGGATAGAT+TGG | 0.397360 | 8.2:+54314568 | MS.gene42723:CDS |
GGCCAGTTTGTAGATGTTCA+TGG | 0.414918 | 8.2:+54312655 | MS.gene42723:CDS |
CTTGAAGAATACATGGCAAA+TGG | 0.417008 | 8.2:+54315651 | MS.gene42723:CDS |
ATATTCTTTGAGAAAATTTG+TGG | 0.422729 | 8.2:-54312752 | None:intergenic |
CATTTGCCATGTATTCTTCA+AGG | 0.425140 | 8.2:-54315650 | None:intergenic |
TTAATGCAGGAAGAAATTTA+CGG | 0.426943 | 8.2:+54311566 | None:intergenic |
GAGAACTTTGTTTGGAATGT+TGG | 0.428162 | 8.2:+54314593 | MS.gene42723:CDS |
CGAGAAATTGTCCAATTCAA+TGG | 0.434579 | 8.2:-54312832 | None:intergenic |
GATGCCACATTCAATCGAAA+TGG | 0.438499 | 8.2:+54315722 | MS.gene42723:CDS |
TCTTCACAGAAGCTATTGAT+AGG | 0.451974 | 8.2:+54314732 | MS.gene42723:CDS |
TTCCATGAACATCTACAAAC+TGG | 0.459282 | 8.2:-54312657 | None:intergenic |
TAGATGGGATTTGACTGCCT+TGG | 0.461500 | 8.2:+54314834 | MS.gene42723:intron |
AAATACAGCATGTGCACCTA+TGG | 0.461919 | 8.2:-54315682 | None:intergenic |
GATGATGTGTATGATTTGTA+TGG | 0.476992 | 8.2:+54314689 | MS.gene42723:CDS |
GAGATCAACGCAAAGTACTA+AGG | 0.480926 | 8.2:+54311588 | MS.gene42723:CDS |
ATTGATGTGTTGCAGAGGAT+TGG | 0.486919 | 8.2:+54311668 | MS.gene42723:CDS |
CATGGTTATGAGATATCTAC+AGG | 0.495263 | 8.2:+54311812 | MS.gene42723:CDS |
TTGAAGAATACATGGCAAAT+GGG | 0.509127 | 8.2:+54315652 | MS.gene42723:CDS |
GCCATGTATTCTTCAAGGGT+TGG | 0.511248 | 8.2:-54315645 | None:intergenic |
GCAAGAGTTGCTAATGACTA+CGG | 0.511511 | 8.2:+54315801 | MS.gene42723:CDS |
TTCAATCGAAATGGAAGACT+TGG | 0.513598 | 8.2:+54315731 | MS.gene42723:CDS |
ATGTAAGTTCTTCTTCAACT+TGG | 0.516743 | 8.2:-54311756 | None:intergenic |
AGCATATTTGCATGTAGTAT+GGG | 0.525197 | 8.2:-54314864 | None:intergenic |
GAAGCAAAGTGGTACTATAG+TGG | 0.533336 | 8.2:+54315615 | MS.gene42723:CDS |
CATATTTGATTGAAGCAAAG+TGG | 0.534124 | 8.2:+54315604 | MS.gene42723:CDS |
GAATATTTGAAACAAAATAG+AGG | 0.535112 | 8.2:+54312769 | MS.gene42723:CDS |
ATTTGCCATGTATTCTTCAA+GGG | 0.535304 | 8.2:-54315649 | None:intergenic |
TTTCTCGACTCGAGGCTCGA+TGG | 0.546070 | 8.2:+54312848 | MS.gene42723:CDS |
TGCTGTCAAGCGAATTATGT+TGG | 0.546945 | 8.2:-54315772 | None:intergenic |
TCCAACCCTTGAAGAATACA+TGG | 0.560229 | 8.2:+54315644 | MS.gene42723:CDS |
GTCATTAGCAACTCTTGCAA+TGG | 0.561701 | 8.2:-54315796 | None:intergenic |
CAAGAGTTGCTAATGACTAC+GGG | 0.573530 | 8.2:+54315802 | MS.gene42723:CDS |
TTCAGACTCTTGAGGCAACA+TGG | 0.578812 | 8.2:+54311794 | MS.gene42723:CDS |
TCTTCCATTTCGATTGAATG+TGG | 0.582432 | 8.2:-54315726 | None:intergenic |
TTGGACAATTTCTCGACTCG+AGG | 0.586359 | 8.2:+54312840 | MS.gene42723:CDS |
ACACTTTAGTTCTTCTAGGT+AGG | 0.588791 | 8.2:-54312956 | None:intergenic |
AAGAACTAAAGTGTGCATCA+AGG | 0.590523 | 8.2:+54312965 | MS.gene42723:CDS |
GCACATGCTGTATTTACCCA+TGG | 0.601527 | 8.2:+54315690 | MS.gene42723:CDS |
AGATCAACGCAAAGTACTAA+GGG | 0.605070 | 8.2:+54311589 | MS.gene42723:CDS |
GAAGAGCTCAAGTTCTTCCA+GGG | 0.609664 | 8.2:-54314714 | None:intergenic |
GTAGTATGGGAGAGAATCCA+AGG | 0.610000 | 8.2:-54314851 | None:intergenic |
GTGGCATCGAAAAGTAACCA+TGG | 0.621565 | 8.2:-54315707 | None:intergenic |
TGGCATCGAAAAGTAACCAT+GGG | 0.626709 | 8.2:-54315706 | None:intergenic |
CATGCAAATATGCTTTCATG+CGG | 0.630142 | 8.2:+54314873 | MS.gene42723:CDS |
GAGTCTGAACTTGAGTGCTG+TGG | 0.633446 | 8.2:-54311780 | None:intergenic |
AGTTTATTGATGTGTTGCAG+AGG | 0.634869 | 8.2:+54311663 | MS.gene42723:CDS |
CACTCAAGTTCAGACTCTTG+AGG | 0.656354 | 8.2:+54311786 | MS.gene42723:CDS |
GCAAATGGGTGTGTATCCAT+AGG | 0.671102 | 8.2:+54315666 | MS.gene42723:CDS |
GTATGATTTGTATGGCACCC+TGG | 0.671543 | 8.2:+54314697 | MS.gene42723:CDS |
ATCATACACATCATCAACTG+TGG | 0.683052 | 8.2:-54314681 | None:intergenic |
GACTTATTAGAAGTGATACG+TGG | 0.723426 | 8.2:-54312795 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATATATATATATATAT+AGG | - | chr8.2:54312290-54312271 | None:intergenic | 0.0% |
!! | TATATATATATATATATATA+GGG | - | chr8.2:54312289-54312270 | None:intergenic | 0.0% |
!! | TTAAGCAAAAAAAAATATAA+AGG | - | chr8.2:54314088-54314107 | None:intergenic | 10.0% |
!!! | ATTATCTCTATATATTTTAA+AGG | + | chr8.2:54315175-54315194 | MS.gene42723:intron | 10.0% |
!!! | CTAAAAACTTATTTAAAATT+GGG | - | chr8.2:54315539-54315558 | None:intergenic | 10.0% |
!!! | TATCAAATAATTTTTTTGAA+GGG | + | chr8.2:54314252-54314271 | MS.gene42723:intron | 10.0% |
!!! | TTATCAAATAATTTTTTTGA+AGG | + | chr8.2:54314251-54314270 | MS.gene42723:intron | 10.0% |
!!! | TTATCTCTATATATTTTAAA+GGG | + | chr8.2:54315176-54315195 | MS.gene42723:intron | 10.0% |
!! | AAATGATTAGTAATGTTAAT+TGG | + | chr8.2:54313097-54313116 | MS.gene42723:intron | 15.0% |
!! | AACATTACATAATATATACA+AGG | + | chr8.2:54313790-54313809 | MS.gene42723:intron | 15.0% |
!! | AATGATTAGTAATGTTAATT+GGG | + | chr8.2:54313098-54313117 | MS.gene42723:intron | 15.0% |
!! | ACATTACATAATATATACAA+GGG | + | chr8.2:54313791-54313810 | MS.gene42723:intron | 15.0% |
!! | ATATATATATATATTGTTGG+TGG | + | chr8.2:54315307-54315326 | MS.gene42723:intron | 15.0% |
!! | GATTGAAAAACAATTAATAA+TGG | + | chr8.2:54313363-54313382 | MS.gene42723:intron | 15.0% |
!! | TTTACTATTAAAATCAACAT+GGG | - | chr8.2:54313287-54313306 | None:intergenic | 15.0% |
!!! | AAAAATTTGAGTTTTCTTTT+GGG | + | chr8.2:54314331-54314350 | MS.gene42723:intron | 15.0% |
!!! | AAAAGTTTAAAATAGAAGTT+TGG | - | chr8.2:54315484-54315503 | None:intergenic | 15.0% |
!!! | ATTGATAATTTCTATAACAA+GGG | - | chr8.2:54314797-54314816 | None:intergenic | 15.0% |
!!! | ATTTTTACTTATAAATGAGA+TGG | - | chr8.2:54313501-54313520 | None:intergenic | 15.0% |
!!! | CCAATTTTAAATAAGTTTTT+AGG | + | chr8.2:54315537-54315556 | MS.gene42723:intron | 15.0% |
!!! | CCTAAAAACTTATTTAAAAT+TGG | - | chr8.2:54315540-54315559 | None:intergenic | 15.0% |
!!! | TAAAAATTTGAGTTTTCTTT+TGG | + | chr8.2:54314330-54314349 | MS.gene42723:intron | 15.0% |
!!! | TATTTTCTTTCAATTTGTAA+TGG | - | chr8.2:54313946-54313965 | None:intergenic | 15.0% |
!!! | TTTTACTATTAAAATCAACA+TGG | - | chr8.2:54313288-54313307 | None:intergenic | 15.0% |
!!! | TTTTTACTTATAAATGAGAT+GGG | - | chr8.2:54313500-54313519 | None:intergenic | 15.0% |
!! | AAAAAAAACCTAATTTGAGA+TGG | - | chr8.2:54313049-54313068 | None:intergenic | 20.0% |
!! | AAATAATATAATACTCCCTT+CGG | - | chr8.2:54315134-54315153 | None:intergenic | 20.0% |
!! | ATCACTTATAGTAATTATGA+AGG | - | chr8.2:54312243-54312262 | None:intergenic | 20.0% |
!! | CAAATTATTAGTAGAAAGTA+TGG | - | chr8.2:54314492-54314511 | None:intergenic | 20.0% |
!! | CATTAATATATACGAAAAAC+AGG | + | chr8.2:54312873-54312892 | MS.gene42723:CDS | 20.0% |
!! | TCCATAAAAATATCTTAGTT+TGG | - | chr8.2:54314285-54314304 | None:intergenic | 20.0% |
!! | TTAAAATAGAAGTTTGGTAT+TGG | - | chr8.2:54315478-54315497 | None:intergenic | 20.0% |
!!! | ACCAAACTAAGATATTTTTA+TGG | + | chr8.2:54314281-54314300 | MS.gene42723:intron | 20.0% |
!!! | ACCATTTTAACAAAGAAATT+AGG | + | chr8.2:54311699-54311718 | MS.gene42723:CDS | 20.0% |
!!! | AGTAGACATAATTTTTGTTA+TGG | - | chr8.2:54313995-54314014 | None:intergenic | 20.0% |
!!! | ATATTCTTTGAGAAAATTTG+TGG | - | chr8.2:54312755-54312774 | None:intergenic | 20.0% |
!!! | ATTTTTTCTTCATTTTCAGA+TGG | + | chr8.2:54314516-54314535 | MS.gene42723:intron | 20.0% |
!!! | CCATTTTAACAAAGAAATTA+GGG | + | chr8.2:54311700-54311719 | MS.gene42723:CDS | 20.0% |
!!! | GAAGTATGTAATTTTAAGAA+AGG | + | chr8.2:54312634-54312653 | MS.gene42723:CDS | 20.0% |
!!! | GAATATTTGAAACAAAATAG+AGG | + | chr8.2:54312769-54312788 | MS.gene42723:CDS | 20.0% |
!!! | GATTGATAATTTCTATAACA+AGG | - | chr8.2:54314798-54314817 | None:intergenic | 20.0% |
!!! | GTAGACATAATTTTTGTTAT+GGG | - | chr8.2:54313994-54314013 | None:intergenic | 20.0% |
!!! | GTCAATTGTTTCTTATAATA+AGG | - | chr8.2:54315008-54315027 | None:intergenic | 20.0% |
!!! | TTGAAAGTAACATTTTTGAA+AGG | + | chr8.2:54313638-54313657 | MS.gene42723:intron | 20.0% |
!!! | TTTTACTTATAAATGAGATG+GGG | - | chr8.2:54313499-54313518 | None:intergenic | 20.0% |
!!! | TTTTGTCTTTTATGTTAGAA+AGG | - | chr8.2:54313851-54313870 | None:intergenic | 20.0% |
! | ATGATTCAGTTATTATGGAA+CGG | - | chr8.2:54312014-54312033 | None:intergenic | 25.0% |
! | ATTCTGAATTGTTCAAAATC+TGG | - | chr8.2:54314632-54314651 | None:intergenic | 25.0% |
! | CATAATAACTGAATCATTTG+CGG | + | chr8.2:54312017-54312036 | MS.gene42723:intron | 25.0% |
! | CCCTAATTTCTTTGTTAAAA+TGG | - | chr8.2:54311703-54311722 | None:intergenic | 25.0% |
! | CTTTGATTATTGTTCCAAAT+GGG | - | chr8.2:54314453-54314472 | None:intergenic | 25.0% |
! | GAAATTATCAATCTTGTGTT+TGG | + | chr8.2:54314805-54314824 | MS.gene42723:intron | 25.0% |
! | GCAAAGTTATAACTAAAAAG+TGG | - | chr8.2:54312403-54312422 | None:intergenic | 25.0% |
! | GCGAAATGGATAAATTATTT+AGG | - | chr8.2:54312054-54312073 | None:intergenic | 25.0% |
! | TCTTTGATTATTGTTCCAAA+TGG | - | chr8.2:54314454-54314473 | None:intergenic | 25.0% |
! | TGAAAAACATGTAGTTAGTT+CGG | - | chr8.2:54311960-54311979 | None:intergenic | 25.0% |
! | TTCATTTCTCAAAGAAACAA+AGG | - | chr8.2:54314419-54314438 | None:intergenic | 25.0% |
!! | AAGTTGTCATTTACATTAAG+TGG | + | chr8.2:54312995-54313014 | MS.gene42723:intron | 25.0% |
!! | GATTTTGAACAATTCAGAAT+TGG | + | chr8.2:54314632-54314651 | MS.gene42723:CDS | 25.0% |
!! | GCTGATTGTTTCTTATAATA+AGG | + | chr8.2:54315107-54315126 | MS.gene42723:intron | 25.0% |
!! | TAAGAAACAATCAGCTTTTT+AGG | - | chr8.2:54315102-54315121 | None:intergenic | 25.0% |
!! | TTGTTTCTTATAATAAGGAC+CGG | - | chr8.2:54315131-54315112 | None:intergenic | 25.0% |
!!! | GGACATAGATTTTTTTTATG+AGG | - | chr8.2:54311939-54311958 | None:intergenic | 25.0% |
!!! | TAGTAGTCTTTGATTGATTT+TGG | - | chr8.2:54311916-54311935 | None:intergenic | 25.0% |
AAGCATATTTGCATGTAGTA+TGG | - | chr8.2:54314868-54314887 | None:intergenic | 30.0% | |
AAGTGAAAGTGAGAGAAAAA+TGG | - | chr8.2:54312201-54312220 | None:intergenic | 30.0% | |
ACTTCTAATAAGTCATGCTT+TGG | + | chr8.2:54312804-54312823 | MS.gene42723:CDS | 30.0% | |
AGAAAAACTGAGCTTTACTA+GGG | + | chr8.2:54314559-54314578 | MS.gene42723:CDS | 30.0% | |
AGCATATTTGCATGTAGTAT+GGG | - | chr8.2:54314867-54314886 | None:intergenic | 30.0% | |
ATCAAAGAATTGAGAGAGAT+TGG | + | chr8.2:54314466-54314485 | MS.gene42723:intron | 30.0% | |
ATCATCAACTGTGGTAATTA+AGG | - | chr8.2:54314675-54314694 | None:intergenic | 30.0% | |
ATGTAAGTTCTTCTTCAACT+TGG | - | chr8.2:54311759-54311778 | None:intergenic | 30.0% | |
ATGTTAGAAAGGAGAATAAG+TGG | - | chr8.2:54313840-54313859 | None:intergenic | 30.0% | |
ATTTGCCATGTATTCTTCAA+GGG | - | chr8.2:54315652-54315671 | None:intergenic | 30.0% | |
CAAAGAAATTAGGGACATAT+TGG | + | chr8.2:54311709-54311728 | MS.gene42723:CDS | 30.0% | |
CATAATATATACAAGGGACA+TGG | + | chr8.2:54313797-54313816 | MS.gene42723:intron | 30.0% | |
CATATTTGATTGAAGCAAAG+TGG | + | chr8.2:54315604-54315623 | MS.gene42723:CDS | 30.0% | |
CGCAAATGATTCAGTTATTA+TGG | - | chr8.2:54312019-54312038 | None:intergenic | 30.0% | |
CTAAAAGACACCTTCATAAA+AGG | + | chr8.2:54312422-54312441 | MS.gene42723:intron | 30.0% | |
GTTTGAAGATGAAACCATAT+TGG | + | chr8.2:54312711-54312730 | MS.gene42723:CDS | 30.0% | |
TAGAAAAACTGAGCTTTACT+AGG | + | chr8.2:54314558-54314577 | MS.gene42723:CDS | 30.0% | |
TATTGCATTGAAAAGCGAAA+TGG | - | chr8.2:54312068-54312087 | None:intergenic | 30.0% | |
TGAAATCCAATTTAGCGAAT+TGG | - | chr8.2:54312921-54312940 | None:intergenic | 30.0% | |
TTCTTATAATAAGGACCGAA+GGG | + | chr8.2:54315116-54315135 | MS.gene42723:intron | 30.0% | |
TTGAAGAATACATGGCAAAT+GGG | + | chr8.2:54315652-54315671 | MS.gene42723:CDS | 30.0% | |
TTTACTCCAATTCGCTAAAT+TGG | + | chr8.2:54312912-54312931 | MS.gene42723:CDS | 30.0% | |
TTTCTTATAATAAGGACCGA+AGG | + | chr8.2:54315115-54315134 | MS.gene42723:intron | 30.0% | |
! | CAAAGAAACAAAGGACTTTT+GGG | - | chr8.2:54314410-54314429 | None:intergenic | 30.0% |
! | GATGATGTGTATGATTTGTA+TGG | + | chr8.2:54314689-54314708 | MS.gene42723:CDS | 30.0% |
! | GTTGTATTGCTATTGTTAGA+GGG | + | chr8.2:54313412-54313431 | MS.gene42723:intron | 30.0% |
! | TCAAAGAAACAAAGGACTTT+TGG | - | chr8.2:54314411-54314430 | None:intergenic | 30.0% |
! | TGTTTCTTTGAGAAATGAAG+AGG | + | chr8.2:54314420-54314439 | MS.gene42723:intron | 30.0% |
! | TTGAGTGTCTTGTTAAGTAT+TGG | - | chr8.2:54312176-54312195 | None:intergenic | 30.0% |
! | TTTTCTTCATTTTCAGATGG+TGG | + | chr8.2:54314519-54314538 | MS.gene42723:intron | 30.0% |
!! | GACATAATTTTTGTTATGGG+AGG | - | chr8.2:54313991-54314010 | None:intergenic | 30.0% |
!! | TAATTTTTGTTATGGGAGGT+AGG | - | chr8.2:54313987-54314006 | None:intergenic | 30.0% |
AAAATGTGCAAAGTTGCGTA+CGG | + | chr8.2:54315505-54315524 | MS.gene42723:intron | 35.0% | |
AAATCGCATGGTAATATGCA+AGG | - | chr8.2:54315352-54315371 | None:intergenic | 35.0% | |
AAGAACTAAAGTGTGCATCA+AGG | + | chr8.2:54312965-54312984 | MS.gene42723:CDS | 35.0% | |
AGATGACACCTAATTTGAGA+TGG | + | chr8.2:54313463-54313482 | MS.gene42723:intron | 35.0% | |
AGTTTATTGATGTGTTGCAG+AGG | + | chr8.2:54311663-54311682 | MS.gene42723:CDS | 35.0% | |
ATCATACACATCATCAACTG+TGG | - | chr8.2:54314684-54314703 | None:intergenic | 35.0% | |
ATCTCTTGCTTCATCCAATA+TGG | - | chr8.2:54312728-54312747 | None:intergenic | 35.0% | |
CATGCAAATATGCTTTCATG+CGG | + | chr8.2:54314873-54314892 | MS.gene42723:CDS | 35.0% | |
CATGGTTATGAGATATCTAC+AGG | + | chr8.2:54311812-54311831 | MS.gene42723:CDS | 35.0% | |
CATTTGCCATGTATTCTTCA+AGG | - | chr8.2:54315653-54315672 | None:intergenic | 35.0% | |
CGAGAAATTGTCCAATTCAA+TGG | - | chr8.2:54312835-54312854 | None:intergenic | 35.0% | |
CTTGAAGAATACATGGCAAA+TGG | + | chr8.2:54315651-54315670 | MS.gene42723:CDS | 35.0% | |
CTTTGGATCTTCCATTGAAT+TGG | + | chr8.2:54312821-54312840 | MS.gene42723:CDS | 35.0% | |
GAAATGTTAACTAGTGCTCT+CGG | + | chr8.2:54313120-54313139 | MS.gene42723:intron | 35.0% | |
GACTTATTAGAAGTGATACG+TGG | - | chr8.2:54312798-54312817 | None:intergenic | 35.0% | |
GATGGAGACAGTATCAATTA+AGG | - | chr8.2:54313031-54313050 | None:intergenic | 35.0% | |
GTGAGTTTAGATCAGTTGAT+AGG | + | chr8.2:54313767-54313786 | MS.gene42723:intron | 35.0% | |
TACTCTCTCCATCTCAAATT+AGG | - | chr8.2:54313474-54313493 | None:intergenic | 35.0% | |
TACTGTCTCCATCTCAAATT+AGG | + | chr8.2:54313038-54313057 | MS.gene42723:intron | 35.0% | |
TCTTCACAGAAGCTATTGAT+AGG | + | chr8.2:54314732-54314751 | MS.gene42723:CDS | 35.0% | |
TCTTCCATTTCGATTGAATG+TGG | - | chr8.2:54315729-54315748 | None:intergenic | 35.0% | |
TTCAATCGAAATGGAAGACT+TGG | + | chr8.2:54315731-54315750 | MS.gene42723:CDS | 35.0% | |
TTCCATGAACATCTACAAAC+TGG | - | chr8.2:54312660-54312679 | None:intergenic | 35.0% | |
TTCTTATAATAAGGACCGGA+GGG | - | chr8.2:54314999-54315018 | None:intergenic | 35.0% | |
TTTCTTATAATAAGGACCGG+AGG | - | chr8.2:54315000-54315019 | None:intergenic | 35.0% | |
TTTCTTATCATGTGCCCTAA+GGG | + | chr8.2:54314354-54314373 | MS.gene42723:intron | 35.0% | |
! | AGATCAACGCAAAGTACTAA+GGG | + | chr8.2:54311589-54311608 | MS.gene42723:CDS | 35.0% |
! | CGTTGTATTGCTATTGTTAG+AGG | + | chr8.2:54313411-54313430 | MS.gene42723:intron | 35.0% |
! | CTAGAAGACACCTTTTATGA+AGG | - | chr8.2:54312435-54312454 | None:intergenic | 35.0% |
! | GAGAACTTTGTTTGGAATGT+TGG | + | chr8.2:54314593-54314612 | MS.gene42723:CDS | 35.0% |
! | GATTGGTTGAGAACTTTGTT+TGG | + | chr8.2:54314585-54314604 | MS.gene42723:CDS | 35.0% |
! | TGTGTTTGGTGATTCTAGAT+GGG | + | chr8.2:54314819-54314838 | MS.gene42723:intron | 35.0% |
! | TTGTGTTTGGTGATTCTAGA+TGG | + | chr8.2:54314818-54314837 | MS.gene42723:intron | 35.0% |
!! | ACACTTTAGTTCTTCTAGGT+AGG | - | chr8.2:54312959-54312978 | None:intergenic | 35.0% |
!! | ATGCACACTTTAGTTCTTCT+AGG | - | chr8.2:54312963-54312982 | None:intergenic | 35.0% |
!!! | TTCATTTTCAGATGGTGGAA+AGG | + | chr8.2:54314524-54314543 | MS.gene42723:intron | 35.0% |
AAAGTGGAAATCACACCTTG+AGG | - | chr8.2:54312387-54312406 | None:intergenic | 40.0% | |
AAATACAGCATGTGCACCTA+TGG | - | chr8.2:54315685-54315704 | None:intergenic | 40.0% | |
ATTGATGTGTTGCAGAGGAT+TGG | + | chr8.2:54311668-54311687 | MS.gene42723:CDS | 40.0% | |
CAAGAGTTGCTAATGACTAC+GGG | + | chr8.2:54315802-54315821 | MS.gene42723:CDS | 40.0% | |
CTAAAAGACACCTTCATGAG+TGG | - | chr8.2:54312355-54312374 | None:intergenic | 40.0% | |
CTCTCATAATTGTGCCCTTA+GGG | - | chr8.2:54314371-54314390 | None:intergenic | 40.0% | |
CTTACTGCTTTCTTCAGGTA+TGG | - | chr8.2:54314964-54314983 | None:intergenic | 40.0% | |
GAAGCAAAGTGGTACTATAG+TGG | + | chr8.2:54315615-54315634 | MS.gene42723:CDS | 40.0% | |
GAGCTTTACTAGGGATAGAT+TGG | + | chr8.2:54314568-54314587 | MS.gene42723:CDS | 40.0% | |
GATGCCACATTCAATCGAAA+TGG | + | chr8.2:54315722-54315741 | MS.gene42723:CDS | 40.0% | |
GCAAGAGTTGCTAATGACTA+CGG | + | chr8.2:54315801-54315820 | MS.gene42723:CDS | 40.0% | |
GTCATTAGCAACTCTTGCAA+TGG | - | chr8.2:54315799-54315818 | None:intergenic | 40.0% | |
GTTTCTTATCATGTGCCCTA+AGG | + | chr8.2:54314353-54314372 | MS.gene42723:intron | 40.0% | |
TCCAACCCTTGAAGAATACA+TGG | + | chr8.2:54315644-54315663 | MS.gene42723:CDS | 40.0% | |
TCTCTCATAATTGTGCCCTT+AGG | - | chr8.2:54314372-54314391 | None:intergenic | 40.0% | |
TGCTGTCAAGCGAATTATGT+TGG | - | chr8.2:54315775-54315794 | None:intergenic | 40.0% | |
TTGTTAGAAGCCACTCATGA+AGG | + | chr8.2:54312342-54312361 | MS.gene42723:intron | 40.0% | |
! | ATGGAAGACTTGGTTCGTTT+AGG | + | chr8.2:54315741-54315760 | MS.gene42723:CDS | 40.0% |
! | GAGATCAACGCAAAGTACTA+AGG | + | chr8.2:54311588-54311607 | MS.gene42723:CDS | 40.0% |
! | TGGCATCGAAAAGTAACCAT+GGG | - | chr8.2:54315709-54315728 | None:intergenic | 40.0% |
AAGGTCCGGAGTTCAAACTT+CGG | - | chr8.2:54315333-54315352 | None:intergenic | 45.0% | |
ACTAGTGCTCTCGGAAGTTA+AGG | + | chr8.2:54313129-54313148 | MS.gene42723:intron | 45.0% | |
CACTCAAGTTCAGACTCTTG+AGG | + | chr8.2:54311786-54311805 | MS.gene42723:CDS | 45.0% | |
GAAATCACACCTTGAGGTGT+GGG | - | chr8.2:54312381-54312400 | None:intergenic | 45.0% | |
GAAGAGCTCAAGTTCTTCCA+GGG | - | chr8.2:54314717-54314736 | None:intergenic | 45.0% | |
GAAGAGGATCTTGACCCATT+TGG | + | chr8.2:54314436-54314455 | MS.gene42723:intron | 45.0% | |
GCAAATGGGTGTGTATCCAT+AGG | + | chr8.2:54315666-54315685 | MS.gene42723:CDS | 45.0% | |
GCACATGCTGTATTTACCCA+TGG | + | chr8.2:54315690-54315709 | MS.gene42723:CDS | 45.0% | |
GCATGGTAATATGCAAGGTC+CGG | - | chr8.2:54315347-54315366 | None:intergenic | 45.0% | |
GCCATGTATTCTTCAAGGGT+TGG | - | chr8.2:54315648-54315667 | None:intergenic | 45.0% | |
GCTTGCTTACTGCTTTCTTC+AGG | - | chr8.2:54314969-54314988 | None:intergenic | 45.0% | |
GGCCAGTTTGTAGATGTTCA+TGG | + | chr8.2:54312655-54312674 | MS.gene42723:CDS | 45.0% | |
GTAGTATGGGAGAGAATCCA+AGG | - | chr8.2:54314854-54314873 | None:intergenic | 45.0% | |
GTCTCGTTAACGAGTGTCAT+CGG | - | chr8.2:54313265-54313284 | None:intergenic | 45.0% | |
TAGATGGGATTTGACTGCCT+TGG | + | chr8.2:54314834-54314853 | MS.gene42723:intron | 45.0% | |
TCTCGTTAACGAGTGTCATC+GGG | - | chr8.2:54313264-54313283 | None:intergenic | 45.0% | |
TGAAGAGCTCAAGTTCTTCC+AGG | - | chr8.2:54314718-54314737 | None:intergenic | 45.0% | |
TTCAGACTCTTGAGGCAACA+TGG | + | chr8.2:54311794-54311813 | MS.gene42723:CDS | 45.0% | |
! | GTATGATTTGTATGGCACCC+TGG | + | chr8.2:54314697-54314716 | MS.gene42723:CDS | 45.0% |
! | GTGGCATCGAAAAGTAACCA+TGG | - | chr8.2:54315710-54315729 | None:intergenic | 45.0% |
! | TGAGCTTAGCTCAGTTGGTA+GGG | - | chr8.2:54315375-54315394 | None:intergenic | 45.0% |
! | TTGGACAATTTCTCGACTCG+AGG | + | chr8.2:54312840-54312859 | MS.gene42723:CDS | 45.0% |
! | TTTTAGCAACCCACACCTCA+AGG | + | chr8.2:54312369-54312388 | MS.gene42723:intron | 45.0% |
!! | AAATAAAAAAATAAAAAAAC+TGG | + | chr8.2:54311875-54311894 | MS.gene42723:intron | 5.0% |
!! | AATAATTACTTAATTTAAAA+TGG | + | chr8.2:54313227-54313246 | MS.gene42723:intron | 5.0% |
!! | TAAAAAATATCATTATTTAA+CGG | - | chr8.2:54314764-54314783 | None:intergenic | 5.0% |
!! | TATATATATATATATATTGT+TGG | + | chr8.2:54312533-54312552 | MS.gene42723:intron | 5.0% |
!! | TTATAAAAAATTGTAATTTA+GGG | - | chr8.2:54313156-54313175 | None:intergenic | 5.0% |
!! | TTTATAAAAAATTGTAATTT+AGG | - | chr8.2:54313157-54313176 | None:intergenic | 5.0% |
!!! | ACTTTAAAATATTTTTAATA+AGG | + | chr8.2:54314045-54314064 | MS.gene42723:intron | 5.0% |
!!! | TAAAATTTCAAAATTTTTAT+GGG | + | chr8.2:54314105-54314124 | MS.gene42723:intron | 5.0% |
!!! | TTAAAATTTCAAAATTTTTA+TGG | + | chr8.2:54314104-54314123 | MS.gene42723:intron | 5.0% |
!!! | TTTTTTTTTTTAATTTTACA+CGG | + | chr8.2:54313065-54313084 | MS.gene42723:intron | 5.0% |
AAGCAAGCAACTACTCCCTC+CGG | + | chr8.2:54314981-54315000 | MS.gene42723:intron | 50.0% | |
GGAAATCACACCTTGAGGTG+TGG | - | chr8.2:54312382-54312401 | None:intergenic | 50.0% | |
GTGAGCTTAGCTCAGTTGGT+AGG | - | chr8.2:54315376-54315395 | None:intergenic | 50.0% | |
TCTCGTGAGCTTAGCTCAGT+TGG | - | chr8.2:54315380-54315399 | None:intergenic | 50.0% | |
! | GAGTCTGAACTTGAGTGCTG+TGG | - | chr8.2:54311783-54311802 | None:intergenic | 50.0% |
!! | CAGTTGGTAGGGAAATCGCA+TGG | - | chr8.2:54315364-54315383 | None:intergenic | 50.0% |
GGTGGCCGAAGTTTGAACTC+CGG | + | chr8.2:54315325-54315344 | MS.gene42723:intron | 55.0% | |
! | TTTCTCGACTCGAGGCTCGA+TGG | + | chr8.2:54312848-54312867 | MS.gene42723:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.2 | gene | 54311575 | 54315833 | 54311575 | ID=MS.gene42723 |
chr8.2 | mRNA | 54311575 | 54315833 | 54311575 | ID=MS.gene42723.t1;Parent=MS.gene42723 |
chr8.2 | exon | 54311575 | 54311833 | 54311575 | ID=MS.gene42723.t1.exon1;Parent=MS.gene42723.t1 |
chr8.2 | CDS | 54311575 | 54311833 | 54311575 | ID=cds.MS.gene42723.t1;Parent=MS.gene42723.t1 |
chr8.2 | exon | 54312611 | 54312986 | 54312611 | ID=MS.gene42723.t1.exon2;Parent=MS.gene42723.t1 |
chr8.2 | CDS | 54312611 | 54312986 | 54312611 | ID=cds.MS.gene42723.t1;Parent=MS.gene42723.t1 |
chr8.2 | exon | 54314535 | 54314753 | 54314535 | ID=MS.gene42723.t1.exon3;Parent=MS.gene42723.t1 |
chr8.2 | CDS | 54314535 | 54314753 | 54314535 | ID=cds.MS.gene42723.t1;Parent=MS.gene42723.t1 |
chr8.2 | exon | 54314837 | 54314978 | 54314837 | ID=MS.gene42723.t1.exon4;Parent=MS.gene42723.t1 |
chr8.2 | CDS | 54314837 | 54314978 | 54314837 | ID=cds.MS.gene42723.t1;Parent=MS.gene42723.t1 |
chr8.2 | exon | 54315585 | 54315833 | 54315585 | ID=MS.gene42723.t1.exon5;Parent=MS.gene42723.t1 |
chr8.2 | CDS | 54315585 | 54315833 | 54315585 | ID=cds.MS.gene42723.t1;Parent=MS.gene42723.t1 |
Gene Sequence |
Protein sequence |