AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009825

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009825.t1 MTR_5g071550 99.208 379 2 1 1 379 1 378 0.0 773
MS.gene009825.t1 MTR_5g071550 97.898 333 6 1 1 333 1 332 0.0 666
MS.gene009825.t1 MTR_5g071550 97.059 272 7 1 1 272 1 271 0.0 537
MS.gene009825.t1 MTR_3g464650 73.810 294 75 2 88 379 25 318 1.14e-162 458
MS.gene009825.t1 MTR_3g464700 73.507 268 69 2 86 351 47 314 8.68e-147 419
MS.gene009825.t1 MTR_1g014640 40.392 255 139 4 125 375 78 323 1.18e-55 186
MS.gene009825.t1 MTR_1g013400 40.392 255 139 4 125 375 78 323 1.18e-55 186
MS.gene009825.t1 MTR_3g105730 39.608 255 141 4 125 375 13 258 1.79e-54 181
MS.gene009825.t1 MTR_3g105730 39.608 255 141 4 125 375 35 280 1.89e-54 182
MS.gene009825.t1 MTR_1g115570 39.062 256 137 7 124 375 97 337 1.10e-53 181
MS.gene009825.t1 MTR_3g091060 38.760 258 143 5 124 377 96 342 1.33e-50 174
MS.gene009825.t1 MTR_4g116420 36.704 267 133 7 132 373 93 348 1.44e-45 160
MS.gene009825.t1 MTR_5g063940 38.996 259 140 10 125 376 35 282 6.84e-45 156
MS.gene009825.t1 MTR_5g063940 39.837 246 131 9 137 376 1 235 2.13e-44 153
MS.gene009825.t1 MTR_4g125810 38.583 254 122 6 155 376 253 504 4.40e-44 159
MS.gene009825.t1 MTR_3g074610 37.984 258 144 8 125 376 35 282 1.68e-43 152
MS.gene009825.t1 MTR_2g078760 39.147 258 141 8 125 376 7 254 2.32e-43 151
MS.gene009825.t1 MTR_2g078760 39.147 258 141 8 125 376 86 333 8.01e-43 152
MS.gene009825.t1 MTR_4g094208 37.931 261 140 11 125 376 30 277 1.57e-42 150
MS.gene009825.t1 MTR_8g463130 38.521 257 142 7 125 375 7 253 2.60e-41 146
MS.gene009825.t1 MTR_8g463130 38.521 257 142 7 125 375 35 281 4.59e-41 146
MS.gene009825.t1 MTR_2g008850 38.710 248 131 8 137 376 1 235 6.37e-40 142
MS.gene009825.t1 MTR_3g068200 32.277 347 186 9 65 377 46 377 2.41e-39 144
MS.gene009825.t1 MTR_2g008850 38.710 248 131 8 137 376 47 281 5.30e-39 140
MS.gene009825.t1 MTR_3g107880 36.226 265 135 7 132 373 89 342 1.02e-38 142
MS.gene009825.t1 MTR_3g107880 36.226 265 135 7 132 373 32 285 1.02e-38 141
MS.gene009825.t1 MTR_3g107880 36.226 265 135 7 132 373 90 343 1.05e-38 142
MS.gene009825.t1 MTR_1g050520 33.459 266 155 4 125 376 388 645 1.08e-38 146
MS.gene009825.t1 MTR_2g040500 32.268 313 140 9 132 376 228 536 2.06e-37 142
MS.gene009825.t1 MTR_2g033000 33.333 249 143 5 144 375 89 331 4.84e-37 137
MS.gene009825.t1 MTR_3g104710 34.351 262 135 7 150 376 281 540 3.35e-36 139
MS.gene009825.t1 MTR_5g024340 33.333 261 149 7 130 373 91 343 1.17e-35 134
MS.gene009825.t1 MTR_4g094542 38.589 241 134 8 137 373 132 362 1.35e-35 134
MS.gene009825.t1 MTR_1g015110 32.219 329 157 10 108 376 222 544 3.71e-35 135
MS.gene009825.t1 MTR_5g080680 36.975 238 130 5 125 345 102 336 5.61e-35 132
MS.gene009825.t1 MTR_1g028300 37.405 262 146 6 132 376 120 380 1.24e-34 132
MS.gene009825.t1 MTR_1g086350 31.502 273 156 7 128 375 83 349 1.41e-33 129
MS.gene009825.t1 MTR_1g086350 31.502 273 156 7 128 375 67 333 1.47e-33 128
MS.gene009825.t1 MTR_2g078760 40.476 210 114 7 125 328 86 290 1.85e-33 126
MS.gene009825.t1 MTR_4g123080 32.218 239 139 6 154 375 112 344 1.97e-33 128
MS.gene009825.t1 MTR_4g123080 32.218 239 139 6 154 375 94 326 3.20e-33 127
MS.gene009825.t1 MTR_8g102550 34.855 241 139 5 153 376 150 389 3.98e-32 125
MS.gene009825.t1 MTR_7g100240 34.529 223 104 6 155 336 71 292 6.72e-32 124
MS.gene009825.t1 MTR_1g014190 32.246 276 115 9 125 338 62 327 2.67e-31 122
MS.gene009825.t1 MTR_1g014190 32.246 276 115 9 125 338 24 289 4.56e-31 121
MS.gene009825.t1 MTR_1g086350 32.353 238 138 7 155 375 16 247 1.21e-30 119
MS.gene009825.t1 MTR_3g105880 31.295 278 120 9 125 340 24 292 4.34e-30 119
MS.gene009825.t1 MTR_3g105880 31.295 278 120 9 125 340 24 292 7.86e-30 117
MS.gene009825.t1 MTR_3g491830 30.479 292 147 10 131 375 67 349 1.18e-28 115
MS.gene009825.t1 MTR_4g007440 30.147 272 120 8 125 335 24 286 3.45e-28 114
MS.gene009825.t1 MTR_1g116260 30.769 286 140 10 146 375 71 354 7.32e-28 113
MS.gene009825.t1 MTR_1g067210 29.391 279 139 9 155 377 76 352 9.23e-28 112
MS.gene009825.t1 MTR_5g009370 33.212 274 150 7 132 375 60 330 2.62e-27 110
MS.gene009825.t1 MTR_7g090530 34.836 244 114 8 135 337 52 291 8.13e-27 111
MS.gene009825.t1 MTR_1g112840 30.804 224 113 6 155 337 81 303 2.77e-25 106
MS.gene009825.t1 MTR_3g032700 32.922 243 118 9 137 338 53 291 3.60e-25 106
MS.gene009825.t1 MTR_3g105730 39.860 143 80 2 132 270 42 182 4.53e-25 102
MS.gene009825.t1 MTR_3g032660 32.510 243 119 9 137 338 53 291 1.08e-24 105
MS.gene009825.t1 MTR_0015s0140 29.032 279 141 9 154 377 78 354 4.10e-24 102
MS.gene009825.t1 MTR_2g020970 29.470 302 152 13 125 376 52 342 5.84e-24 102
MS.gene009825.t1 MTR_2g020970 29.470 302 152 13 125 376 52 342 5.96e-24 102
MS.gene009825.t1 MTR_4g118340 28.521 284 147 11 138 376 69 341 6.51e-24 102
MS.gene009825.t1 MTR_1g106855 30.131 229 114 6 155 339 61 287 7.81e-24 100
MS.gene009825.t1 MTR_7g090550 31.915 282 133 11 135 368 53 323 1.03e-23 102
MS.gene009825.t1 MTR_7g112430 29.960 247 144 8 149 375 60 297 1.63e-23 101
MS.gene009825.t1 MTR_7g081020 30.357 224 114 8 155 337 76 298 2.45e-23 99.4
MS.gene009825.t1 MTR_1g106855 30.131 229 114 6 155 339 61 287 4.72e-23 99.8
MS.gene009825.t1 MTR_7g081020 30.357 224 114 8 155 337 76 298 5.10e-23 99.8
MS.gene009825.t1 MTR_6g081850 29.237 236 137 7 131 339 51 283 3.98e-22 96.3
MS.gene009825.t1 MTR_8g074930 29.018 224 117 6 155 337 79 301 1.10e-21 95.9
MS.gene009825.t1 MTR_1g083750 27.372 274 167 10 125 375 33 297 1.16e-20 93.2
MS.gene009825.t1 MTR_1g110210 27.236 246 146 8 151 375 64 297 1.74e-20 91.7
MS.gene009825.t1 MTR_2g033910 28.889 225 119 6 155 338 75 299 2.57e-20 91.7
MS.gene009825.t1 MTR_4g013295 29.020 255 135 9 126 335 49 302 8.62e-20 90.1
MS.gene009825.t1 MTR_5g080680 34.783 184 101 4 125 291 102 283 9.30e-20 88.6
MS.gene009825.t1 MTR_7g029240 31.048 248 144 10 149 375 60 301 1.97e-19 89.7
MS.gene009825.t1 MTR_0015s0140 29.808 208 102 5 214 377 93 300 3.08e-19 88.2
MS.gene009825.t1 MTR_1g019760 28.571 245 148 10 149 375 59 294 3.60e-19 89.0
MS.gene009825.t1 MTR_3g101540 27.984 243 152 9 149 375 60 295 4.28e-19 88.6
MS.gene009825.t1 MTR_3g101540 27.984 243 152 9 149 375 60 295 4.71e-19 88.6
MS.gene009825.t1 MTR_1g019760 28.395 243 151 9 149 375 59 294 6.60e-19 88.2
MS.gene009825.t1 MTR_2g078760 36.875 160 92 5 125 279 86 241 2.04e-18 84.3
MS.gene009825.t1 MTR_4g094208 37.013 154 82 9 125 270 30 176 8.30e-17 79.0
MS.gene009825.t1 MTR_8g017240 29.796 245 136 8 126 335 57 300 1.05e-16 81.3
MS.gene009825.t1 MTR_8g074930 29.032 186 91 5 193 337 4 189 1.69e-16 79.3
MS.gene009825.t1 MTR_7g070510 27.863 262 136 10 126 335 63 323 1.96e-16 80.9
MS.gene009825.t1 MTR_4g113480 31.698 265 129 14 137 363 60 310 2.10e-16 81.3
MS.gene009825.t1 MTR_1g083690 28.188 298 171 12 118 373 52 348 4.33e-16 79.0
MS.gene009825.t1 MTR_6g087000 28.253 269 140 10 152 375 121 381 7.16e-16 79.7
MS.gene009825.t1 MTR_4g120410 27.652 264 143 11 117 335 51 311 7.19e-16 78.6
MS.gene009825.t1 MTR_7g112490 27.508 309 172 13 118 375 54 361 1.03e-15 78.2
MS.gene009825.t1 MTR_6g087000 28.253 269 140 10 152 375 121 381 1.12e-15 79.3
MS.gene009825.t1 MTR_7g112490 27.508 309 172 13 118 375 72 379 1.75e-15 77.8
MS.gene009825.t1 MTR_2g435550 25.436 287 171 12 127 371 64 349 3.40e-15 76.6
MS.gene009825.t1 MTR_2g435550 25.436 287 171 12 127 371 50 335 4.55e-15 75.9
MS.gene009825.t1 MTR_3g032590 31.088 193 92 7 187 338 105 297 4.85e-15 76.6
MS.gene009825.t1 MTR_1g083750 28.718 195 117 6 194 375 20 205 1.40e-14 74.3
MS.gene009825.t1 MTR_7g021530 26.937 271 135 10 126 335 59 327 2.11e-14 74.3
MS.gene009825.t1 MTR_7g021530 26.937 271 135 10 126 335 100 368 3.55e-14 73.9
MS.gene009825.t1 MTR_1g016620 30.556 252 131 11 126 336 40 288 7.49e-14 72.4
MS.gene009825.t1 MTR_2g435550 25.000 276 165 11 127 361 64 338 7.98e-14 72.8
MS.gene009825.t1 MTR_1g071370 24.632 272 142 9 162 378 178 441 3.11e-13 71.6
MS.gene009825.t1 MTR_7g080170 25.899 278 137 10 126 335 67 343 3.32e-12 68.2
MS.gene009825.t1 MTR_7g080170 33.333 138 75 5 214 335 99 235 1.28e-11 65.9
MS.gene009825.t1 MTR_5g005810 27.037 270 166 13 132 378 313 574 4.85e-11 64.7
MS.gene009825.t1 MTR_1g075730 23.913 230 145 6 150 375 74 277 5.34e-11 63.2
MS.gene009825.t1 MTR_7g021530 29.756 205 114 9 160 336 76 278 9.25e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009825.t1 AT1G07160 62.564 390 121 7 1 377 1 378 5.92e-161 457
MS.gene009825.t1 AT2G30020 60.794 403 127 7 1 379 1 396 2.61e-157 448
MS.gene009825.t1 AT2G40180 60.952 315 109 6 77 379 77 389 8.61e-126 368
MS.gene009825.t1 AT1G67820 46.584 322 144 6 37 333 12 330 6.00e-86 268
MS.gene009825.t1 AT1G67820 47.386 306 129 6 37 333 12 294 1.42e-85 266
MS.gene009825.t1 AT4G08260 52.869 244 82 4 137 379 1 212 3.85e-78 239
MS.gene009825.t1 AT3G27140 49.378 241 69 3 137 376 1 189 1.47e-65 209
MS.gene009825.t1 AT2G05050 44.672 244 83 4 137 379 1 193 3.22e-58 188
MS.gene009825.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.54e-55 185
MS.gene009825.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.81e-55 185
MS.gene009825.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.81e-55 185
MS.gene009825.t1 AT5G10740 40.000 255 140 4 125 375 34 279 4.91e-55 185
MS.gene009825.t1 AT5G10740 40.000 255 140 4 125 375 34 279 4.91e-55 185
MS.gene009825.t1 AT5G53140 39.608 255 140 6 128 377 104 349 6.23e-55 186
MS.gene009825.t1 AT5G53140 39.608 255 140 6 128 377 104 349 6.23e-55 186
MS.gene009825.t1 AT5G24940 39.216 255 142 4 125 375 34 279 2.24e-54 186
MS.gene009825.t1 AT1G43900 38.996 259 138 7 124 376 125 369 1.22e-52 179
MS.gene009825.t1 AT4G28400 36.965 257 146 7 125 375 14 260 2.78e-44 154
MS.gene009825.t1 AT3G15260 41.633 245 128 7 137 376 55 289 3.29e-44 155
MS.gene009825.t1 AT3G15260 41.633 245 128 7 137 376 55 289 3.29e-44 155
MS.gene009825.t1 AT4G28400 36.965 257 146 7 125 375 36 282 3.78e-44 154
MS.gene009825.t1 AT1G78200 37.500 248 137 7 137 376 1 238 6.81e-43 150
MS.gene009825.t1 AT1G78200 37.500 248 137 7 137 376 1 238 6.81e-43 150
MS.gene009825.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene009825.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene009825.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene009825.t1 AT2G20630 36.327 245 141 6 137 376 45 279 3.72e-42 149
MS.gene009825.t1 AT2G20630 36.929 241 137 6 137 372 45 275 3.66e-41 147
MS.gene009825.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene009825.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene009825.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene009825.t1 AT5G51760 34.528 307 145 8 125 377 79 383 1.79e-40 147
MS.gene009825.t1 AT5G51760 34.528 307 145 8 125 377 109 413 3.15e-40 147
MS.gene009825.t1 AT2G25620 32.542 295 153 7 106 376 85 357 5.00e-40 146
MS.gene009825.t1 AT2G25620 32.542 295 153 7 106 376 85 357 5.00e-40 146
MS.gene009825.t1 AT2G29380 36.934 287 143 10 124 376 79 361 5.07e-40 145
MS.gene009825.t1 AT2G33700 34.866 261 145 6 130 373 90 342 1.01e-39 145
MS.gene009825.t1 AT5G57050 33.333 306 144 8 125 376 73 372 3.64e-39 144
MS.gene009825.t1 AT5G57050 33.987 306 142 9 125 376 113 412 4.00e-39 144
MS.gene009825.t1 AT4G26080 32.667 300 149 8 124 376 130 423 7.21e-39 144
MS.gene009825.t1 AT1G22280 34.601 263 152 10 125 376 34 287 1.34e-38 140
MS.gene009825.t1 AT1G22280 34.749 259 151 10 125 376 34 281 1.94e-37 137
MS.gene009825.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene009825.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene009825.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene009825.t1 AT1G17550 35.206 267 127 7 155 376 237 502 4.14e-37 140
MS.gene009825.t1 AT1G17550 35.206 267 127 7 155 376 237 502 4.14e-37 140
MS.gene009825.t1 AT2G40860 33.077 260 149 5 132 376 400 649 5.84e-37 142
MS.gene009825.t1 AT2G40860 33.077 260 149 5 132 376 302 551 6.55e-37 140
MS.gene009825.t1 AT3G51470 32.184 261 151 8 128 373 76 325 1.19e-34 131
MS.gene009825.t1 AT3G51470 31.801 261 152 7 128 373 32 281 1.25e-34 130
MS.gene009825.t1 AT1G48040 34.211 266 143 7 134 373 88 347 1.51e-34 131
MS.gene009825.t1 AT4G28400 38.095 210 119 7 125 328 36 240 2.52e-34 127
MS.gene009825.t1 AT2G34740 34.274 248 148 8 137 379 101 338 7.90e-34 128
MS.gene009825.t1 AT3G11410 36.481 233 120 4 132 337 112 343 1.24e-33 129
MS.gene009825.t1 AT2G40860 32.927 246 140 5 132 362 400 635 4.03e-33 130
MS.gene009825.t1 AT1G07430 35.169 236 129 5 125 337 121 355 5.01e-33 128
MS.gene009825.t1 AT5G59220 35.102 245 134 4 125 347 112 353 7.96e-32 124
MS.gene009825.t1 AT1G34750 39.151 212 116 9 124 329 36 240 1.75e-29 114
MS.gene009825.t1 AT2G34740 37.000 200 116 7 137 331 97 291 3.91e-29 115
MS.gene009825.t1 AT2G34740 37.438 203 111 8 137 331 115 309 4.18e-29 115
MS.gene009825.t1 AT3G62260 31.224 237 141 5 154 373 26 257 4.19e-29 114
MS.gene009825.t1 AT3G17250 28.520 277 161 8 128 373 121 391 4.72e-29 117
MS.gene009825.t1 AT3G62260 31.224 237 141 5 154 373 115 346 7.47e-29 115
MS.gene009825.t1 AT3G62260 31.224 237 141 5 154 373 116 347 7.81e-29 115
MS.gene009825.t1 AT4G31860 30.182 275 122 8 125 338 24 289 2.59e-28 112
MS.gene009825.t1 AT4G31860 28.213 319 152 10 125 377 24 331 2.62e-28 114
MS.gene009825.t1 AT5G02760 31.674 221 111 6 155 336 72 291 3.15e-28 114
MS.gene009825.t1 AT3G55050 34.375 224 103 7 155 336 84 305 1.33e-27 112
MS.gene009825.t1 AT3G55050 34.375 224 103 7 155 336 84 305 1.33e-27 112
MS.gene009825.t1 AT2G25070 30.769 273 123 7 125 338 24 289 3.58e-27 110
MS.gene009825.t1 AT2G25070 30.769 273 123 7 125 338 24 289 3.58e-27 110
MS.gene009825.t1 AT3G12620 32.743 226 102 6 155 335 83 303 8.44e-27 110
MS.gene009825.t1 AT3G12620 32.743 226 102 6 155 335 83 303 8.44e-27 110
MS.gene009825.t1 AT4G33920 30.000 280 135 9 155 375 61 338 8.71e-27 110
MS.gene009825.t1 AT1G18030 31.780 236 131 8 131 339 81 313 2.94e-26 108
MS.gene009825.t1 AT5G06750 32.328 232 108 7 151 336 78 306 6.73e-26 107
MS.gene009825.t1 AT5G06750 32.328 232 108 7 151 336 78 306 6.73e-26 107
MS.gene009825.t1 AT1G18030 32.883 222 119 8 131 325 81 299 7.19e-26 106
MS.gene009825.t1 AT4G38520 33.632 223 108 8 155 337 81 303 3.48e-25 105
MS.gene009825.t1 AT4G38520 33.632 223 108 8 155 337 81 303 3.48e-25 105
MS.gene009825.t1 AT4G31860 30.268 261 112 8 125 324 24 275 3.92e-25 103
MS.gene009825.t1 AT3G51370 30.357 224 114 6 155 337 79 301 2.30e-24 103
MS.gene009825.t1 AT3G51370 30.357 224 114 6 155 337 79 301 2.30e-24 103
MS.gene009825.t1 AT5G66080 31.839 223 112 6 155 337 82 304 1.06e-23 101
MS.gene009825.t1 AT2G40860 32.338 201 116 4 132 317 400 595 1.45e-23 102
MS.gene009825.t1 AT4G33920 30.579 242 108 8 193 375 15 255 4.95e-23 98.2
MS.gene009825.t1 AT4G33920 32.227 211 93 6 214 375 16 225 2.59e-22 95.5
MS.gene009825.t1 AT1G09160 29.289 239 146 9 153 375 66 297 1.02e-21 96.3
MS.gene009825.t1 AT1G09160 29.289 239 146 9 153 375 66 297 1.02e-21 96.3
MS.gene009825.t1 AT1G47380 29.388 245 146 10 149 375 58 293 3.56e-21 94.7
MS.gene009825.t1 AT4G27800 28.179 291 155 10 131 375 66 348 4.83e-21 94.0
MS.gene009825.t1 AT3G06270 25.753 299 167 11 125 376 53 343 6.23e-21 93.2
MS.gene009825.t1 AT5G06750 32.461 191 85 5 192 338 36 226 3.26e-20 90.5
MS.gene009825.t1 AT3G17090 28.251 223 120 7 155 337 84 306 5.41e-20 90.1
MS.gene009825.t1 AT3G17090 26.354 277 150 9 155 377 84 360 5.92e-20 90.9
MS.gene009825.t1 AT5G57050 33.831 201 93 7 125 291 113 307 8.18e-20 89.4
MS.gene009825.t1 AT3G51370 34.194 155 71 3 214 337 62 216 1.41e-19 88.6
MS.gene009825.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene009825.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene009825.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene009825.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene009825.t1 AT5G27930 29.836 305 158 15 118 373 55 352 3.78e-19 88.6
MS.gene009825.t1 AT5G27930 29.836 305 158 15 118 373 55 352 3.78e-19 88.6
MS.gene009825.t1 AT5G66080 32.961 179 86 5 193 337 22 200 1.62e-18 85.1
MS.gene009825.t1 AT3G63320 26.198 313 136 10 157 376 71 381 2.91e-18 86.3
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 5.07e-18 85.9
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 8.95e-18 85.9
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 9.92e-18 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 9.92e-18 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.04e-17 85.5
MS.gene009825.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.05e-17 85.5
MS.gene009825.t1 AT3G63320 28.163 245 117 8 189 376 56 298 1.09e-17 84.0
MS.gene009825.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene009825.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene009825.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene009825.t1 AT5G01700 27.645 293 161 11 130 377 4 290 3.00e-17 82.4
MS.gene009825.t1 AT1G72770 32.727 165 81 3 155 290 238 401 8.37e-17 81.6
MS.gene009825.t1 AT1G72770 32.727 165 81 3 155 290 238 401 8.37e-17 81.6
MS.gene009825.t1 AT5G01700 27.609 297 164 11 126 377 49 339 9.13e-17 81.6
MS.gene009825.t1 AT3G16800 39.007 141 68 6 214 337 75 214 2.38e-16 78.6
MS.gene009825.t1 AT3G16800 39.007 141 68 6 214 337 75 214 2.38e-16 78.6
MS.gene009825.t1 AT5G59220 31.915 188 103 4 125 290 112 296 2.42e-16 79.3
MS.gene009825.t1 AT3G63340 34.899 149 73 6 244 376 339 479 3.41e-15 77.8
MS.gene009825.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene009825.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene009825.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene009825.t1 AT1G22280 33.553 152 90 8 125 270 34 180 1.07e-13 69.7
MS.gene009825.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene009825.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene009825.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene009825.t1 AT3G16560 25.746 268 128 8 150 348 170 435 2.23e-13 71.6
MS.gene009825.t1 AT5G36250 23.793 290 152 9 114 336 57 344 7.13e-12 67.0
MS.gene009825.t1 AT5G19280 29.412 238 132 10 132 339 318 549 2.42e-11 65.5
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 152 289 4.20e-11 64.7
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 152 289 4.20e-11 64.7
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene009825.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene009825.t1 AT1G79630 35.507 138 72 5 214 335 218 354 6.53e-11 64.3
MS.gene009825.t1 AT1G79630 35.507 138 72 5 214 335 222 358 7.58e-11 63.9

Find 84 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAGCTTCAGATGGATTA+TGG 0.192944 5.3:+56718102 MS.gene009825:CDS
TTTACGTCTAACAAAGATTC+TGG 0.196863 5.3:+56716755 MS.gene009825:CDS
TCTTCGTGGTGAAAACAATT+TGG 0.251614 5.3:+56716976 MS.gene009825:CDS
GAGAGGGAGGAGGGAGTATA+TGG 0.257999 5.3:+56716928 MS.gene009825:CDS
GTCTGTTTCAAGAGGCTCTT+TGG 0.279836 5.3:+56718457 MS.gene009825:CDS
CTCATTCCAGGTTAGTAATC+AGG 0.298380 5.3:+56718352 MS.gene009825:intron
AATTGAAACACTATGTTTAG+AGG 0.303735 5.3:+56718504 MS.gene009825:CDS
TTGATTTATGTCGCGGTGTT+TGG 0.326760 5.3:+56717961 MS.gene009825:CDS
TGCCGCAAATTCAGCAGCTT+TGG 0.367132 5.3:-56717527 None:intergenic
AATATTAACAAGTCATGTTC+AGG 0.369231 5.3:-56718083 None:intergenic
ATTAGCTTCAGATGGATTAT+GGG 0.376455 5.3:+56718103 MS.gene009825:CDS
TAACAACCAACAACCGTTGA+TGG 0.393883 5.3:+56718412 MS.gene009825:CDS
TTCGGTAACCGAAGACAAAA+AGG 0.394385 5.3:-56716719 None:intergenic
GCTGTGTAACAGCATTCATT+AGG 0.400134 5.3:+56717680 MS.gene009825:CDS
CGCGGTGTTTGGAGGATTCA+AGG 0.409122 5.3:+56717972 MS.gene009825:CDS
ATTCTAATAACTTTAGTCTC+AGG 0.420683 5.3:-56718056 None:intergenic
GTTGTTGAGGCGGAGGGAGA+TGG 0.425322 5.3:+56716887 MS.gene009825:CDS
TAACTTAGAAAAGAATATCT+TGG 0.427613 5.3:+56717552 MS.gene009825:CDS
TGCCAAAGCTGCTGAATTTG+CGG 0.457706 5.3:+56717525 MS.gene009825:CDS
ATTTATGTCGCGGTGTTTGG+AGG 0.459287 5.3:+56717964 MS.gene009825:CDS
TTACGTCTAACAAAGATTCT+GGG 0.460686 5.3:+56716756 MS.gene009825:CDS
ATGGAAGATCGTTATACAGC+TGG 0.461700 5.3:+56716947 MS.gene009825:CDS
TTTATTGTAAGAGAGGGAGG+AGG 0.476578 5.3:+56716918 MS.gene009825:CDS
CTGTTTATTGTAAGAGAGGG+AGG 0.478469 5.3:+56716915 MS.gene009825:CDS
TTGTTGAGGCGGAGGGAGAT+GGG 0.484067 5.3:+56716888 MS.gene009825:CDS
TTGCAGAAAAGAGATGAAGA+AGG 0.490349 5.3:-56716581 None:intergenic
ACCTTCAAGGGAAGACGAAA+AGG 0.493186 5.3:+56717792 MS.gene009825:CDS
GAGGGATGTTGTTGAGGCGG+AGG 0.493467 5.3:+56716880 MS.gene009825:CDS
TTATTGTAAGAGAGGGAGGA+GGG 0.495221 5.3:+56716919 MS.gene009825:CDS
TTCAGATGGATTATGGGATA+AGG 0.496992 5.3:+56718109 MS.gene009825:CDS
CTTGCTGTATCAAGAGGAAT+CGG 0.497083 5.3:+56717999 MS.gene009825:CDS
AACTTAGTTGTGTCTAATGC+TGG 0.499105 5.3:+56717709 MS.gene009825:CDS
ATCTGATCACCGACCTTCAA+GGG 0.504972 5.3:+56717780 MS.gene009825:CDS
CATCTGATCACCGACCTTCA+AGG 0.507130 5.3:+56717779 MS.gene009825:CDS
TTTCGTCTTCCCTTGAAGGT+CGG 0.508205 5.3:-56717789 None:intergenic
ACAGCTGGGGTTAATCTTCG+TGG 0.510384 5.3:+56716962 MS.gene009825:CDS
CGACACCGTCTGCGGTGGCG+AGG 0.516352 5.3:+56716861 MS.gene009825:CDS
TACAGGCCATCAACGGTTGT+TGG 0.517697 5.3:-56718418 None:intergenic
ATTCTGTTTATTGTAAGAGA+GGG 0.518939 5.3:+56716912 MS.gene009825:CDS
TTGTTAATATTAGCTTCAGA+TGG 0.519141 5.3:+56718095 MS.gene009825:CDS
TTTGGCGTATTTGATGGCCA+TGG 0.525971 5.3:+56717499 MS.gene009825:CDS
TATTCTGTTTATTGTAAGAG+AGG 0.528687 5.3:+56716911 MS.gene009825:CDS
GTGCTGTTATTAGTAGAGGA+GGG 0.529836 5.3:+56717740 MS.gene009825:CDS
GCACAATTGTCTGTTTCAAG+AGG 0.531606 5.3:+56718449 MS.gene009825:CDS
AGATCGACACTTGAAACAAT+GGG 0.532064 5.3:+56718022 MS.gene009825:CDS
TCGGTTACCGAAACTACCCT+TGG 0.532247 5.3:+56716730 MS.gene009825:CDS
AGGGATGTTGTTGAGGCGGA+GGG 0.535503 5.3:+56716881 MS.gene009825:CDS
CAATTTGATTATCATGACAC+TGG 0.543628 5.3:-56718486 None:intergenic
CGTGCTGTTATTAGTAGAGG+AGG 0.544244 5.3:+56717739 MS.gene009825:CDS
TGGAAGATCGTTATACAGCT+GGG 0.545761 5.3:+56716948 MS.gene009825:CDS
GGTGAAGAAGGTGAAGAACA+AGG 0.546327 5.3:-56716698 None:intergenic
TGAACTCAGAATCGGTATTG+AGG 0.547989 5.3:-56717630 None:intergenic
TGCCGTGCTGTTATTAGTAG+AGG 0.550511 5.3:+56717736 MS.gene009825:CDS
TGCTGTTATTAGTAGAGGAG+GGG 0.551553 5.3:+56717741 MS.gene009825:CDS
AGAAACAGGTATATTAAGCC+TGG 0.552089 5.3:-56716816 None:intergenic
CGAAGATGATGTTGAGGAGG+CGG 0.553327 5.3:+56717594 MS.gene009825:CDS
GACACCGTCTGCGGTGGCGA+GGG 0.554379 5.3:+56716862 MS.gene009825:CDS
ACATCCCTCGCCACCGCAGA+CGG 0.561418 5.3:-56716866 None:intergenic
GAGATCGACACTTGAAACAA+TGG 0.569960 5.3:+56718021 MS.gene009825:CDS
AAACATGTCTTGCTCCGTCG+CGG 0.570392 5.3:+56716535 None:intergenic
TGAAGAACAAGGAGAAGGCG+AGG 0.572840 5.3:-56716687 None:intergenic
GCCACCGCAGACGGTGTCGC+CGG 0.573609 5.3:-56716857 None:intergenic
CGTCGCGGTTTCGAATTCGC+CGG 0.576069 5.3:+56716550 MS.gene009825:CDS
CAGCAGCTTTGGCACCTCCA+TGG 0.581623 5.3:-56717516 None:intergenic
GGATCTCTTGCTGTATCAAG+AGG 0.589287 5.3:+56717993 MS.gene009825:CDS
TGAAGAGGAAAAGACCTACC+AGG 0.589521 5.3:+56716798 MS.gene009825:CDS
ACAGGTATATTAAGCCTGGT+AGG 0.595689 5.3:-56716812 None:intergenic
GTAACAGCATTCATTAGGAA+TGG 0.600306 5.3:+56717685 MS.gene009825:CDS
GAAGGTGAAGAACAAGGAGA+AGG 0.604617 5.3:-56716692 None:intergenic
GAGCGACGAAGATGATGTTG+AGG 0.609121 5.3:+56717588 MS.gene009825:CDS
GGCGAGGGATGTTGTTGAGG+CGG 0.612440 5.3:+56716877 MS.gene009825:CDS
TCCGGCGACACCGTCTGCGG+TGG 0.616313 5.3:+56716856 MS.gene009825:CDS
CGACGAAGATGATGTTGAGG+AGG 0.621342 5.3:+56717591 MS.gene009825:CDS
TGTTCCGGCGACACCGTCTG+CGG 0.623253 5.3:+56716853 MS.gene009825:CDS
GGTGGCGAGGGATGTTGTTG+AGG 0.629842 5.3:+56716874 MS.gene009825:CDS
TAGTAGAGGAGGGGTTGCTG+AGG 0.630412 5.3:+56717750 MS.gene009825:CDS
CGGCGAATTCGAAACCGCGA+CGG 0.641319 5.3:-56716549 None:intergenic
CTCCTCTACTAATAACAGCA+CGG 0.646708 5.3:-56717738 None:intergenic
GGTTATGTTGATTTATGTCG+CGG 0.653499 5.3:+56717954 MS.gene009825:CDS
GATGAAGAAGGTGAAAACAC+CGG 0.659578 5.3:-56716569 None:intergenic
AAAGGACAGAATCGAGACCC+TGG 0.666426 5.3:+56717810 MS.gene009825:CDS
GGAAGATCGTTATACAGCTG+GGG 0.671830 5.3:+56716949 MS.gene009825:CDS
GGCGTATTTGATGGCCATGG+AGG 0.699437 5.3:+56717502 MS.gene009825:CDS
GTTGAGGAGGCGGTGAAACG+TGG 0.709755 5.3:+56717604 MS.gene009825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATATTTGTTATTTTTT+TGG + chr5.3:56717153-56717172 MS.gene009825:intron 10.0%
!!! ATATATAATATTGATTTGGT+TGG + chr5.3:56717031-56717050 MS.gene009825:intron 15.0%
!! ACTTGATTTCTTAATTGATT+TGG + chr5.3:56717102-56717121 MS.gene009825:intron 20.0%
!! CACAATTCAAATTTAACTAA+TGG - chr5.3:56717312-56717331 None:intergenic 20.0%
!! TAACTTAGAAAAGAATATCT+TGG + chr5.3:56717552-56717571 MS.gene009825:CDS 20.0%
!!! TTGATATGTTTTTGTCAATT+GGG + chr5.3:56717062-56717081 MS.gene009825:intron 20.0%
!!! TTTATGTTTTTTTGAAACCT+TGG + chr5.3:56717872-56717891 MS.gene009825:intron 20.0%
! AATATTAACAAGTCATGTTC+AGG - chr5.3:56718086-56718105 None:intergenic 25.0%
! ATTCTAATAACTTTAGTCTC+AGG - chr5.3:56718059-56718078 None:intergenic 25.0%
! ATTCTGTTTATTGTAAGAGA+GGG + chr5.3:56716912-56716931 MS.gene009825:CDS 25.0%
! GTTAATCATTCGATATCAAA+AGG - chr5.3:56718315-56718334 None:intergenic 25.0%
! TATTCTGTTTATTGTAAGAG+AGG + chr5.3:56716911-56716930 MS.gene009825:CDS 25.0%
! TTCATGAAAAAAGATCTACA+TGG + chr5.3:56717649-56717668 MS.gene009825:CDS 25.0%
!! TTGTTAATATTAGCTTCAGA+TGG + chr5.3:56718095-56718114 MS.gene009825:CDS 25.0%
!!! CTTAATTGATTTGGTCTTAT+TGG + chr5.3:56717111-56717130 MS.gene009825:intron 25.0%
!!! GTTATTTTTTTGGTCTGATT+TGG + chr5.3:56717163-56717182 MS.gene009825:intron 25.0%
!!! GTTGATATGTTTTTGTCAAT+TGG + chr5.3:56717061-56717080 MS.gene009825:intron 25.0%
!!! GTTTATTTTGTGATAATTGC+AGG + chr5.3:56717471-56717490 MS.gene009825:intron 25.0%
!!! TTTTTTCATGAACTCAGAAT+CGG - chr5.3:56717641-56717660 None:intergenic 25.0%
AAATGGTAAGGAAATTTACC+AGG - chr5.3:56717831-56717850 None:intergenic 30.0%
AACTCAATACACAAATGGTA+AGG - chr5.3:56717843-56717862 None:intergenic 30.0%
AAGAGAACTCAATACACAAA+TGG - chr5.3:56717848-56717867 None:intergenic 30.0%
AATGGTAAGGAAATTTACCA+GGG - chr5.3:56717830-56717849 None:intergenic 30.0%
ATGAAAAAAGATCTACATGG+TGG + chr5.3:56717652-56717671 MS.gene009825:CDS 30.0%
CAATTTGATTATCATGACAC+TGG - chr5.3:56718489-56718508 None:intergenic 30.0%
GACTAACCTTTATGTGTATT+CGG + chr5.3:56718154-56718173 MS.gene009825:intron 30.0%
GTAGATAGTTGAAGCAAATT+AGG + chr5.3:56717331-56717350 MS.gene009825:intron 30.0%
TGAAGTTAAAAAGTCTGTCT+TGG + chr5.3:56717279-56717298 MS.gene009825:intron 30.0%
TTACGTCTAACAAAGATTCT+GGG + chr5.3:56716756-56716775 MS.gene009825:CDS 30.0%
TTGTTAGACGTAAAAACCAA+GGG - chr5.3:56716749-56716768 None:intergenic 30.0%
TTTACGTCTAACAAAGATTC+TGG + chr5.3:56716755-56716774 MS.gene009825:CDS 30.0%
TTTGTTAGACGTAAAAACCA+AGG - chr5.3:56716750-56716769 None:intergenic 30.0%
! AAGTTTCTTTTTCTCATTCC+AGG + chr5.3:56718340-56718359 MS.gene009825:intron 30.0%
! GTGTAAAATCTAACTTGTAC+AGG + chr5.3:56717449-56717468 MS.gene009825:intron 30.0%
!! ATTAGCTTCAGATGGATTAT+GGG + chr5.3:56718103-56718122 MS.gene009825:CDS 30.0%
!! TATTAGCTTCAGATGGATTA+TGG + chr5.3:56718102-56718121 MS.gene009825:CDS 30.0%
AACTTAGTTGTGTCTAATGC+TGG + chr5.3:56717709-56717728 MS.gene009825:CDS 35.0%
ACATGATTTGAGTGTGTGTT+TGG - chr5.3:56718237-56718256 None:intergenic 35.0%
AGAAACAGGTATATTAAGCC+TGG - chr5.3:56716819-56716838 None:intergenic 35.0%
AGATCGACACTTGAAACAAT+GGG + chr5.3:56718022-56718041 MS.gene009825:CDS 35.0%
GCATTGAAATTTGTCTTGCA+GGG + chr5.3:56717930-56717949 MS.gene009825:intron 35.0%
GTAAAAACCAAGGGTAGTTT+CGG - chr5.3:56716740-56716759 None:intergenic 35.0%
GTAACAGCATTCATTAGGAA+TGG + chr5.3:56717685-56717704 MS.gene009825:CDS 35.0%
TCTTCGTGGTGAAAACAATT+TGG + chr5.3:56716976-56716995 MS.gene009825:CDS 35.0%
TGCATTGAAATTTGTCTTGC+AGG + chr5.3:56717929-56717948 MS.gene009825:intron 35.0%
TTGCAGAAAAGAGATGAAGA+AGG - chr5.3:56716584-56716603 None:intergenic 35.0%
! CAAAAAGCATGTTCAGAAAC+AGG - chr5.3:56716833-56716852 None:intergenic 35.0%
! CAATTGTGCAAGCTTTTTAC+AGG - chr5.3:56718438-56718457 None:intergenic 35.0%
! CTTCTTCACCTTTTTGTCTT+CGG + chr5.3:56716711-56716730 MS.gene009825:CDS 35.0%
! GTTGTTGTTGTTGTTGAAGA+TGG - chr5.3:56716647-56716666 None:intergenic 35.0%
!! GGTTATGTTGATTTATGTCG+CGG + chr5.3:56717954-56717973 MS.gene009825:CDS 35.0%
!! TGAACATGCTTTTTGTGTTC+CGG + chr5.3:56716838-56716857 MS.gene009825:CDS 35.0%
!! TGTTGTTGTTGATGATGACT+TGG + chr5.3:56717407-56717426 MS.gene009825:intron 35.0%
!! TTCAGATGGATTATGGGATA+AGG + chr5.3:56718109-56718128 MS.gene009825:CDS 35.0%
!!! AGAATGATGCTGTTTTGAAG+AGG + chr5.3:56716783-56716802 MS.gene009825:CDS 35.0%
!!! TGATAATTGCAGGCCTTTTT+TGG + chr5.3:56717481-56717500 MS.gene009825:intron 35.0%
ACAGGTATATTAAGCCTGGT+AGG - chr5.3:56716815-56716834 None:intergenic 40.0%
AGAACCAAACTCAAACACCA+AGG - chr5.3:56717892-56717911 None:intergenic 40.0%
ATGGAAGATCGTTATACAGC+TGG + chr5.3:56716947-56716966 MS.gene009825:CDS 40.0%
CAAACGCCGAATACACATAA+AGG - chr5.3:56718163-56718182 None:intergenic 40.0%
CGAAGACAAAAAGGTGAAGA+AGG - chr5.3:56716713-56716732 None:intergenic 40.0%
CTCATTCCAGGTTAGTAATC+AGG + chr5.3:56718352-56718371 MS.gene009825:intron 40.0%
CTCCTCTACTAATAACAGCA+CGG - chr5.3:56717741-56717760 None:intergenic 40.0%
CTGTTTATTGTAAGAGAGGG+AGG + chr5.3:56716915-56716934 MS.gene009825:CDS 40.0%
GAGATCGACACTTGAAACAA+TGG + chr5.3:56718021-56718040 MS.gene009825:CDS 40.0%
GATGAAGAAGGTGAAAACAC+CGG - chr5.3:56716572-56716591 None:intergenic 40.0%
GCACAATTGTCTGTTTCAAG+AGG + chr5.3:56718449-56718468 MS.gene009825:CDS 40.0%
GCCATCAAATACGCCAAAAA+AGG - chr5.3:56717497-56717516 None:intergenic 40.0%
GCTGTGTAACAGCATTCATT+AGG + chr5.3:56717680-56717699 MS.gene009825:CDS 40.0%
TAACAACCAACAACCGTTGA+TGG + chr5.3:56718412-56718431 MS.gene009825:CDS 40.0%
TGAACTCAGAATCGGTATTG+AGG - chr5.3:56717633-56717652 None:intergenic 40.0%
TGCTGTTATTAGTAGAGGAG+GGG + chr5.3:56717741-56717760 MS.gene009825:CDS 40.0%
TGGAAGATCGTTATACAGCT+GGG + chr5.3:56716948-56716967 MS.gene009825:CDS 40.0%
TTATTGTAAGAGAGGGAGGA+GGG + chr5.3:56716919-56716938 MS.gene009825:CDS 40.0%
TTCGGTAACCGAAGACAAAA+AGG - chr5.3:56716722-56716741 None:intergenic 40.0%
TTGAAATTTGTCTTGCAGGG+TGG + chr5.3:56717933-56717952 MS.gene009825:intron 40.0%
TTGATTTATGTCGCGGTGTT+TGG + chr5.3:56717961-56717980 MS.gene009825:CDS 40.0%
TTTATTGTAAGAGAGGGAGG+AGG + chr5.3:56716918-56716937 MS.gene009825:CDS 40.0%
! AGCTTTTTACAGGCCATCAA+CGG - chr5.3:56718428-56718447 None:intergenic 40.0%
! ATTGCTCGTCAATTTTGCGT+AGG + chr5.3:56718386-56718405 MS.gene009825:CDS 40.0%
! CTTGCTGTATCAAGAGGAAT+CGG + chr5.3:56717999-56718018 MS.gene009825:CDS 40.0%
! GGAAAGCGTGTTTAGTTACA+CGG - chr5.3:56718294-56718313 None:intergenic 40.0%
! GTGCTGTTATTAGTAGAGGA+GGG + chr5.3:56717740-56717759 MS.gene009825:CDS 40.0%
!! GAAACCTTGGTGTTTGAGTT+TGG + chr5.3:56717885-56717904 MS.gene009825:intron 40.0%
!! GTGTTTGAGTTTGGTTCTGT+TGG + chr5.3:56717894-56717913 MS.gene009825:intron 40.0%
!!! GCCTTTTTTGGCGTATTTGA+TGG + chr5.3:56717493-56717512 MS.gene009825:CDS 40.0%
ACCTTCAAGGGAAGACGAAA+AGG + chr5.3:56717792-56717811 MS.gene009825:CDS 45.0%
ATCTGATCACCGACCTTCAA+GGG + chr5.3:56717780-56717799 MS.gene009825:CDS 45.0%
ATTTATGTCGCGGTGTTTGG+AGG + chr5.3:56717964-56717983 MS.gene009825:CDS 45.0%
CTGCTTCCTGATTACTAACC+TGG - chr5.3:56718361-56718380 None:intergenic 45.0%
GAAGGTGAAGAACAAGGAGA+AGG - chr5.3:56716695-56716714 None:intergenic 45.0%
GGAAGATCGTTATACAGCTG+GGG + chr5.3:56716949-56716968 MS.gene009825:CDS 45.0%
GGTGAAGAAGGTGAAGAACA+AGG - chr5.3:56716701-56716720 None:intergenic 45.0%
GTCTGTTTCAAGAGGCTCTT+TGG + chr5.3:56718457-56718476 MS.gene009825:CDS 45.0%
TGAAGAGGAAAAGACCTACC+AGG + chr5.3:56716798-56716817 MS.gene009825:CDS 45.0%
TGCCAAAGCTGCTGAATTTG+CGG + chr5.3:56717525-56717544 MS.gene009825:CDS 45.0%
TTTCGTCTTCCCTTGAAGGT+CGG - chr5.3:56717792-56717811 None:intergenic 45.0%
! CGTGCTGTTATTAGTAGAGG+AGG + chr5.3:56717739-56717758 MS.gene009825:CDS 45.0%
! GGATCTCTTGCTGTATCAAG+AGG + chr5.3:56717993-56718012 MS.gene009825:CDS 45.0%
! TCCTTTTCGTCTTCCCTTGA+AGG - chr5.3:56717796-56717815 None:intergenic 45.0%
! TGCCGTGCTGTTATTAGTAG+AGG + chr5.3:56717736-56717755 MS.gene009825:CDS 45.0%
! TTTGGCGTATTTGATGGCCA+TGG + chr5.3:56717499-56717518 MS.gene009825:CDS 45.0%
!!! TTTAATATATAATATTGATT+TGG + chr5.3:56717027-56717046 MS.gene009825:intron 5.0%
AAAGGACAGAATCGAGACCC+TGG + chr5.3:56717810-56717829 MS.gene009825:CDS 50.0%
ACAGCTGGGGTTAATCTTCG+TGG + chr5.3:56716962-56716981 MS.gene009825:CDS 50.0%
CATCTGATCACCGACCTTCA+AGG + chr5.3:56717779-56717798 MS.gene009825:CDS 50.0%
CGAAGATGATGTTGAGGAGG+CGG + chr5.3:56717594-56717613 MS.gene009825:CDS 50.0%
CGACGAAGATGATGTTGAGG+AGG + chr5.3:56717591-56717610 MS.gene009825:CDS 50.0%
GAGCGACGAAGATGATGTTG+AGG + chr5.3:56717588-56717607 MS.gene009825:CDS 50.0%
TACAGGCCATCAACGGTTGT+TGG - chr5.3:56718421-56718440 None:intergenic 50.0%
TCGGTTACCGAAACTACCCT+TGG + chr5.3:56716730-56716749 MS.gene009825:CDS 50.0%
TGAAGAACAAGGAGAAGGCG+AGG - chr5.3:56716690-56716709 None:intergenic 50.0%
TGCCGCAAATTCAGCAGCTT+TGG - chr5.3:56717530-56717549 None:intergenic 50.0%
AGGGATGTTGTTGAGGCGGA+GGG + chr5.3:56716881-56716900 MS.gene009825:CDS 55.0%
CGCGGTGTTTGGAGGATTCA+AGG + chr5.3:56717972-56717991 MS.gene009825:CDS 55.0%
TAGTAGAGGAGGGGTTGCTG+AGG + chr5.3:56717750-56717769 MS.gene009825:CDS 55.0%
TTGTTGAGGCGGAGGGAGAT+GGG + chr5.3:56716888-56716907 MS.gene009825:CDS 55.0%
! GAGAGGGAGGAGGGAGTATA+TGG + chr5.3:56716928-56716947 MS.gene009825:CDS 55.0%
! GGCGTATTTGATGGCCATGG+AGG + chr5.3:56717502-56717521 MS.gene009825:CDS 55.0%
CGGCGAATTCGAAACCGCGA+CGG - chr5.3:56716552-56716571 None:intergenic 60.0%
CGTCGCGGTTTCGAATTCGC+CGG + chr5.3:56716550-56716569 MS.gene009825:CDS 60.0%
GAGGGATGTTGTTGAGGCGG+AGG + chr5.3:56716880-56716899 MS.gene009825:CDS 60.0%
GGCGAGGGATGTTGTTGAGG+CGG + chr5.3:56716877-56716896 MS.gene009825:CDS 60.0%
GGTGGCGAGGGATGTTGTTG+AGG + chr5.3:56716874-56716893 MS.gene009825:CDS 60.0%
GTTGAGGAGGCGGTGAAACG+TGG + chr5.3:56717604-56717623 MS.gene009825:CDS 60.0%
GTTGTTGAGGCGGAGGGAGA+TGG + chr5.3:56716887-56716906 MS.gene009825:CDS 60.0%
! CAGCAGCTTTGGCACCTCCA+TGG - chr5.3:56717519-56717538 None:intergenic 60.0%
ACATCCCTCGCCACCGCAGA+CGG - chr5.3:56716869-56716888 None:intergenic 65.0%
TGTTCCGGCGACACCGTCTG+CGG + chr5.3:56716853-56716872 MS.gene009825:CDS 65.0%
GACACCGTCTGCGGTGGCGA+GGG + chr5.3:56716862-56716881 MS.gene009825:CDS 70.0%
CGACACCGTCTGCGGTGGCG+AGG + chr5.3:56716861-56716880 MS.gene009825:CDS 75.0%
TCCGGCGACACCGTCTGCGG+TGG + chr5.3:56716856-56716875 MS.gene009825:CDS 75.0%
!! GCCACCGCAGACGGTGTCGC+CGG - chr5.3:56716860-56716879 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 56716539 56718523 56716539 ID=MS.gene009825
chr5.3 mRNA 56716539 56718523 56716539 ID=MS.gene009825.t1;Parent=MS.gene009825
chr5.3 exon 56716539 56716997 56716539 ID=MS.gene009825.t1.exon1;Parent=MS.gene009825.t1
chr5.3 CDS 56716539 56716997 56716539 ID=cds.MS.gene009825.t1;Parent=MS.gene009825.t1
chr5.3 exon 56717493 56717831 56717493 ID=MS.gene009825.t1.exon2;Parent=MS.gene009825.t1
chr5.3 CDS 56717493 56717831 56717493 ID=cds.MS.gene009825.t1;Parent=MS.gene009825.t1
chr5.3 exon 56717951 56718130 56717951 ID=MS.gene009825.t1.exon3;Parent=MS.gene009825.t1
chr5.3 CDS 56717951 56718130 56717951 ID=cds.MS.gene009825.t1;Parent=MS.gene009825.t1
chr5.3 exon 56718362 56718523 56718362 ID=MS.gene009825.t1.exon4;Parent=MS.gene009825.t1
chr5.3 CDS 56718362 56718523 56718362 ID=cds.MS.gene009825.t1;Parent=MS.gene009825.t1
Gene Sequence

>MS.gene009825

ATGTCTTGCTCCGTCGCGGTTTCGAATTCGCCGGTGTTTTCACCTTCTTCATCTCTTTTCTGCAACAAATCTGAAACGTTAACGTTATCTCTTTCTCATCTCAAACCATCTTCAACAACAACAACAACGTCTTCTTCATCGTCTTCTTCCTCGCCTTCTCCTTGTTCTTCACCTTCTTCACCTTTTTGTCTTCGGTTACCGAAACTACCCTTGGTTTTTACGTCTAACAAAGATTCTGGGTCGCAGAATGATGCTGTTTTGAAGAGGAAAAGACCTACCAGGCTTAATATACCTGTTTCTGAACATGCTTTTTGTGTTCCGGCGACACCGTCTGCGGTGGCGAGGGATGTTGTTGAGGCGGAGGGAGATGGGTATTCTGTTTATTGTAAGAGAGGGAGGAGGGAGTATATGGAAGATCGTTATACAGCTGGGGTTAATCTTCGTGGTGAAAACAATTTGGTAAGAAATTTTTTAACTTTTTTTTTTAATTTAATATATAATATTGATTTGGTTGGTTTTGATGTTGATATGTTTTTGTCAATTGGGTTTGTTGAAAGTTTCAAACTTGATTTCTTAATTGATTTGGTCTTATTGGATCTAATTGTTTGCAGAATTTCAATATTTGTTATTTTTTTGGTCTGATTTGGTAGCTGCATATGAAAAATTTGAGATTAATTTATGTAGTTGAAAAAGTCAGTTTTAATTTTTAAGCTGCTAGAATTTTTTTGAGTTGCTGCTTTTGAAGTTAAAAAGTCTGTCTTGGTGATTAGCCATTAGTTAAATTTGAATTGTGTAGATAGTTGAAGCAAATTAGGAACATATGATTATGCATTTAATGTTTCATTGAGATTTGCTGAATATGCTTGCTTGTTGTTGTTGATGATGACTTGGACTTACATAAGATGTGATTGTGTAAAATCTAACTTGTACAGGTTTATTTTGTGATAATTGCAGGCCTTTTTTGGCGTATTTGATGGCCATGGAGGTGCCAAAGCTGCTGAATTTGCGGCAAATAACTTAGAAAAGAATATCTTGGATGAAGTTATCATGAGCGACGAAGATGATGTTGAGGAGGCGGTGAAACGTGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGATCTACATGGTGGTTCTTGCTGTGTAACAGCATTCATTAGGAATGGTAACTTAGTTGTGTCTAATGCTGGTGATTGCCGTGCTGTTATTAGTAGAGGAGGGGTTGCTGAGGCACTAACATCTGATCACCGACCTTCAAGGGAAGACGAAAAGGACAGAATCGAGACCCTGGTAAATTTCCTTACCATTTGTGTATTGAGTTCTCTTTTTATTTATGTTTTTTTGAAACCTTGGTGTTTGAGTTTGGTTCTGTTGGTTCTTTATCTTATGCATTGAAATTTGTCTTGCAGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTATCAAGAGGAATCGGAGATCGACACTTGAAACAATGGGTGACAGCAGAGCCTGAGACTAAAGTTATTAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTAAGACTTAAGAAATTCATAGCGACTAACCTTTATGTGTATTCGGCGTTTGTCGAACATGATTTTGATTGAGATGTTTGTCTAATGTCAAACTCGTGCTAATCCAAACACACACTCAAATCATGTTTGACAAAGATAAAATCAATCATGATGATTTTCGCCGTGTAACTAAACACGCTTTCCTTTTGATATCGAATGATTAACTGATCAAGTTTCTTTTTCTCATTCCAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTCAATTTTGCGTAGGAAATAACAACCAACAACCGTTGATGGCCTGTAAAAAGCTTGCACAATTGTCTGTTTCAAGAGGCTCTTTGGATGATACCAGTGTCATGATAATCAAATTGAAACACTATGTTTAG
Protein sequence

>MS.gene009825.t1

MSCSVAVSNSPVFSPSSSLFCNKSETLTLSLSHLKPSSTTTTTSSSSSSSSPSPCSSPSSPFCLRLPKLPLVFTSNKDSGSQNDAVLKRKRPTRLNIPVSEHAFCVPATPSAVARDVVEAEGDGYSVYCKRGRREYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDEDDVEEAVKRGYLNTDSEFMKKDLHGGSCCVTAFIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARQFCVGNNNQQPLMACKKLAQLSVSRGSLDDTSVMIIKLKHYV