AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene009841

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009841.t1 MTR_5g071070 95.898 707 24 2 1 705 1 704 0.0 1413
MS.gene009841.t1 MTR_5g071070 96.320 625 18 2 83 705 1 622 0.0 1245
MS.gene009841.t1 MTR_5g082830 49.712 694 294 14 30 704 25 682 0.0 635
MS.gene009841.t1 MTR_1g075890 54.071 651 206 14 1 640 1 569 0.0 618
MS.gene009841.t1 MTR_7g092070 42.059 680 293 18 35 661 47 678 3.28e-155 467
MS.gene009841.t1 MTR_3g029590 39.918 729 334 19 33 700 43 728 1.20e-146 445
MS.gene009841.t1 MTR_3g464280 43.914 649 195 18 1 639 1 490 2.18e-142 426
MS.gene009841.t1 MTR_3g464260 41.854 669 217 20 39 704 29 528 1.17e-133 404
MS.gene009841.t1 MTR_3g070880 46.347 438 165 6 33 469 8 376 6.82e-124 379
MS.gene009841.t1 MTR_3g070880 32.569 218 119 9 483 696 322 515 6.57e-18 87.8
MS.gene009841.t1 MTR_1g050438 39.556 541 259 14 35 537 15 525 6.35e-107 337
MS.gene009841.t1 MTR_0728s0020 39.700 534 256 13 35 532 31 534 1.58e-106 337
MS.gene009841.t1 MTR_3g435590 42.965 398 192 8 1 378 1 383 6.86e-96 305
MS.gene009841.t1 MTR_3g464290 38.577 534 207 20 155 673 38 465 3.81e-79 261
MS.gene009841.t1 MTR_3g435680 40.896 335 140 10 138 451 44 341 1.19e-72 241
MS.gene009841.t1 MTR_3g464270 38.161 435 178 14 229 658 8 356 3.73e-67 225
MS.gene009841.t1 MTR_8g102100 45.411 207 105 2 178 381 34 235 2.56e-54 191
MS.gene009841.t1 MTR_6g090380 57.971 138 48 2 196 332 77 205 5.76e-52 185
MS.gene009841.t1 MTR_3g103960 49.419 172 73 3 202 372 32 190 1.18e-51 181
MS.gene009841.t1 MTR_2g090605 61.261 111 43 0 230 340 77 187 3.07e-47 172
MS.gene009841.t1 MTR_4g078660 57.009 107 46 0 226 332 56 162 4.36e-44 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene009841.t1 AT5G58620 46.733 704 254 19 23 704 2 606 0.0 572
MS.gene009841.t1 AT2G40140 42.556 712 284 17 1 704 1 595 1.86e-174 512
MS.gene009841.t1 AT2G40140 42.556 712 284 17 1 704 1 595 1.86e-174 512
MS.gene009841.t1 AT2G41900 38.683 729 318 21 35 700 48 710 5.18e-141 430
MS.gene009841.t1 AT3G55980 49.578 474 196 13 1 462 1 443 5.58e-140 422
MS.gene009841.t1 AT3G55980 37.755 196 82 8 514 704 419 579 1.66e-20 96.7
MS.gene009841.t1 AT3G55980 49.578 474 196 13 1 462 68 510 1.36e-139 424
MS.gene009841.t1 AT3G55980 37.755 196 82 8 514 704 486 646 2.40e-20 96.3
MS.gene009841.t1 AT5G12850 38.170 765 349 28 1 700 1 706 2.41e-139 425
MS.gene009841.t1 AT4G29190 52.273 176 83 1 212 387 62 236 1.66e-54 191
MS.gene009841.t1 AT2G25900 66.964 112 37 0 226 337 86 197 3.67e-53 186
MS.gene009841.t1 AT2G25900 66.964 112 37 0 226 337 86 197 3.67e-53 186
MS.gene009841.t1 AT2G19810 63.333 120 44 0 215 334 63 182 8.92e-53 186
MS.gene009841.t1 AT5G07500 59.504 121 49 0 212 332 34 154 1.39e-49 174
MS.gene009841.t1 AT1G03790 51.634 153 66 3 197 345 53 201 2.49e-47 172
MS.gene009841.t1 AT5G44260 55.970 134 54 2 210 342 44 173 3.10e-45 166

Find 188 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTCATATTCGGACGTATT+TGG 0.179717 5.3:-56456110 None:intergenic
TCCAGTCTTCAATCTGCTTT+TGG 0.183105 5.3:-56455767 None:intergenic
GGTGTATCTGCTTATATTCT+TGG 0.187977 5.3:+56454815 MS.gene009841:CDS
TCAGACATGTCTTCTGTTTC+CGG 0.194365 5.3:+56455087 MS.gene009841:CDS
CTGAGGAAATCATCTTCTTT+TGG 0.219994 5.3:+56456399 MS.gene009841:CDS
CTCTTCATTGTGCGGTTGTT+GGG 0.225881 5.3:+56454888 MS.gene009841:CDS
AAAGTTGGTTCGAACAAATT+AGG 0.237750 5.3:+56454743 MS.gene009841:CDS
GGGCTCACCCGATGGAAATT+TGG 0.238746 5.3:+56456344 MS.gene009841:CDS
CTAGCTGCAGCTGGAGTTAA+AGG 0.264190 5.3:-56456441 None:intergenic
GAGGATGCTACAAGCTCTTT+TGG 0.287126 5.3:+56455045 MS.gene009841:CDS
ATACGACCGGGGAACTAAAT+AGG 0.321029 5.3:+56455953 MS.gene009841:CDS
GTGTCCCTTGTCCTGAGTTT+CGG 0.340392 5.3:+56455359 MS.gene009841:CDS
CAAGGGCCTATTCTCATGAT+TGG 0.354686 5.3:+56455266 MS.gene009841:CDS
GCTCTTCATTGTGCGGTTGT+TGG 0.359015 5.3:+56454887 MS.gene009841:CDS
AGCAAAATCTTGATAATCTC+AGG 0.360059 5.3:-56454926 None:intergenic
ACCTATAGGTTTGATCCATC+TGG 0.362218 5.3:+56456186 MS.gene009841:CDS
TGCAGATGCTGATTCATATT+CGG 0.365840 5.3:-56456120 None:intergenic
ACGCCGCCTTTGACTTCATC+TGG 0.368423 5.3:+56455670 MS.gene009841:CDS
GTCTTTCCTCTCCTTCCAAC+TGG 0.371979 5.3:+56455881 MS.gene009841:CDS
TGCTGCTATGTATGGAAGCT+TGG 0.375393 5.3:+56454793 MS.gene009841:CDS
TATATAGTACCGATGAGTTT+AGG 0.375544 5.3:+56455215 MS.gene009841:CDS
TCCTGTGCCCTAGCTGCAGC+TGG 0.377666 5.3:-56456450 None:intergenic
CGATTGGATCTCCGACCTAT+AGG 0.385130 5.3:+56456172 MS.gene009841:CDS
CGCCCCTTGTATGCTTCTAC+CGG 0.390009 5.3:+56455535 MS.gene009841:CDS
GATGGGGTTGGTTTGTGGTA+TGG 0.391400 5.3:+56454716 MS.gene009841:CDS
CTTCTTTGCTCACAAGGTTG+AGG 0.394404 5.3:+56455507 MS.gene009841:CDS
CAGCATCTGCAACAAAACTA+TGG 0.398990 5.3:+56456132 MS.gene009841:CDS
CACATGGCTGCAGCAGCAAC+GGG 0.402327 5.3:-56455703 None:intergenic
ATTCAGATATTGCAATGCTT+AGG 0.408619 5.3:+56455809 MS.gene009841:CDS
AAAATGTCTTCAAGGTTTGT+AGG 0.409953 5.3:-56455991 None:intergenic
CAACGGAACAGATTCGATTC+CGG 0.410373 5.3:+56456590 MS.gene009841:CDS
TGGAATTTATGCAACATTGA+TGG 0.416189 5.3:-56456027 None:intergenic
AATCTGTTCCGTTGTTAAGA+TGG 0.416969 5.3:-56456581 None:intergenic
TTGGGTTAATTCACTTGTAA+AGG 0.417539 5.3:+56456497 MS.gene009841:CDS
TTCAGATATTGCAATGCTTA+GGG 0.419562 5.3:+56455810 MS.gene009841:CDS
TTGTCAAAAGGATTTGATCA+TGG 0.420181 5.3:+56454568 MS.gene009841:CDS
TATATCCCATTCTTAATGTC+TGG 0.426530 5.3:-56455196 None:intergenic
GAAAAGGCATAAGGCTTAGC+AGG 0.430069 5.3:-56456315 None:intergenic
CTCATGGTTGCTGCTATGTA+TGG 0.430425 5.3:+56454785 MS.gene009841:CDS
CTTGATGCTGCAGGAGCAGC+AGG 0.434896 5.3:+56456060 MS.gene009841:CDS
CGTTGATTTGATTGTATCGC+TGG 0.435031 5.3:+56454997 MS.gene009841:CDS
TCTGCTTATATTCTTGGAAC+AGG 0.435213 5.3:+56454821 MS.gene009841:CDS
GAGACCCGAAAATGTCTTCA+AGG 0.438096 5.3:-56455999 None:intergenic
AGATCCAATCGCACTGGAAG+TGG 0.440483 5.3:-56456160 None:intergenic
CTTATATTCTTGGAACAGGT+CGG 0.441421 5.3:+56454825 MS.gene009841:CDS
ATGTTGATGGGGTTGGTTTG+TGG 0.450945 5.3:+56454711 MS.gene009841:CDS
GAGTGTCCCTTTGTTCATCC+AGG 0.455762 5.3:+56455292 MS.gene009841:CDS
GGTTGCGATGTTGATGGGGT+TGG 0.455769 5.3:+56454704 MS.gene009841:CDS
CCTTTGATTGAAGATAGAAT+TGG 0.456239 5.3:-56455020 None:intergenic
GCAGTACTGTAATATGATCT+AGG 0.457857 5.3:-56455574 None:intergenic
GCTGCTATGTATGGAAGCTT+GGG 0.458172 5.3:+56454794 MS.gene009841:CDS
CACCCGATGGAAATTTGGAT+TGG 0.458700 5.3:+56456349 MS.gene009841:CDS
TCAAAGTGAAGCCTTGTTCA+AGG 0.462018 5.3:+56455248 MS.gene009841:CDS
CCACATGGCTGCAGCAGCAA+CGG 0.462166 5.3:-56455704 None:intergenic
CAGCTATAATGATATTTCCT+TGG 0.464131 5.3:-56455337 None:intergenic
TGTCAAAAGGATTTGATCAT+GGG 0.468107 5.3:+56454569 MS.gene009841:CDS
ACGAGGGTTGCGATGTTGAT+GGG 0.471244 5.3:+56454699 MS.gene009841:CDS
TCTCTTCCAGACATTAAGAA+TGG 0.478120 5.3:+56455190 MS.gene009841:CDS
AGAATTTCACTTGATGCTGC+AGG 0.479378 5.3:+56456051 MS.gene009841:CDS
CTTTAACTCCAGCTGCAGCT+AGG 0.479692 5.3:+56456442 MS.gene009841:CDS
GGAGCAATTGTACATGGATC+AGG 0.480663 5.3:+56456620 MS.gene009841:CDS
CTCTTCCAGACATTAAGAAT+GGG 0.482849 5.3:+56455191 MS.gene009841:CDS
TACTGCTTCTACATTAGAGA+TGG 0.486960 5.3:+56455591 MS.gene009841:CDS
TATGTGAATGGGAATAAAGA+AGG 0.487426 5.3:+56454599 MS.gene009841:CDS
CGGAAAGGATCGTGCAGTAA+AGG 0.487429 5.3:+56455379 MS.gene009841:CDS
AGATTCGATTCCGGCTTGGT+TGG 0.488203 5.3:+56456599 MS.gene009841:CDS
AGCGATACAATCAAATCAAC+GGG 0.489127 5.3:-56454995 None:intergenic
AGCTGGAGTTAAAGGAGTAC+TGG 0.489995 5.3:-56456433 None:intergenic
TCTTCATTGTGCGGTTGTTG+GGG 0.492583 5.3:+56454889 MS.gene009841:CDS
TTGTGGTATGGAAGGAAAGT+TGG 0.493676 5.3:+56454728 MS.gene009841:CDS
ATGGGGTGTGAGTATGTGAA+TGG 0.494445 5.3:+56454587 MS.gene009841:CDS
CATTCCACTTCCAGTGCGAT+TGG 0.498841 5.3:+56456156 MS.gene009841:CDS
TCTGGAAGAGAGACATCAAC+AGG 0.501027 5.3:-56455178 None:intergenic
TTTAACTCCAGCTGCAGCTA+GGG 0.502176 5.3:+56456443 MS.gene009841:CDS
TTATATTCTTGGAACAGGTC+GGG 0.502406 5.3:+56454826 MS.gene009841:CDS
TATTTAGTTCCCCGGTCGTA+TGG 0.502935 5.3:-56455951 None:intergenic
AGGAGATGGAATAGCAGAAC+CGG 0.503649 5.3:-56455554 None:intergenic
CCTATAGGTTTGATCCATCT+GGG 0.506082 5.3:+56456187 MS.gene009841:CDS
ATGGAGAACCAAGTGACATT+GGG 0.506623 5.3:-56455624 None:intergenic
CTATGAACCAGATGTGTCTT+GGG 0.508226 5.3:+56456479 MS.gene009841:CDS
TCCAGCTGCAGCTAGGGCAC+AGG 0.510410 5.3:+56456449 MS.gene009841:CDS
CTCGGTCCAATCATGAGAAT+AGG 0.511802 5.3:-56455272 None:intergenic
ACACGGCTTTGCAAGGATGA+AGG 0.512844 5.3:+56455463 MS.gene009841:CDS
TAGTTCCCCGGTCGTATGGT+TGG 0.517395 5.3:-56455947 None:intergenic
GAATTAACCCAAGACACATC+TGG 0.517792 5.3:-56456486 None:intergenic
GTTGATGTTAATCGTTCTAG+TGG 0.518818 5.3:+56454848 MS.gene009841:CDS
ATGCAAGGCGACGCGATCCA+AGG 0.519136 5.3:+56455320 MS.gene009841:CDS
TTAGCGTTGAAGATCAGAAA+AGG 0.521469 5.3:+56456547 MS.gene009841:CDS
CACCGCGCTCGATAAAGCTC+TGG 0.521693 5.3:-56456263 None:intergenic
GATGGAGAACCAAGTGACAT+TGG 0.523747 5.3:-56455625 None:intergenic
AACGAGGGTTGCGATGTTGA+TGG 0.524302 5.3:+56454698 MS.gene009841:CDS
CGAAAACCTATTTAGTTCCC+CGG 0.524607 5.3:-56455959 None:intergenic
GAACAGATTCGATTCCGGCT+TGG 0.533268 5.3:+56456595 MS.gene009841:CDS
TCAATTAGCCCAATGTCACT+TGG 0.534086 5.3:+56455616 MS.gene009841:CDS
CCAATTCTATCTTCAATCAA+AGG 0.534122 5.3:+56455020 MS.gene009841:CDS
CCCCAGTTAGAAAAGGCATA+AGG 0.538596 5.3:-56456324 None:intergenic
GTCCAATCCAAATTTCCATC+GGG 0.538779 5.3:-56456351 None:intergenic
TTGGTTGGAGCAATTGTACA+TGG 0.540592 5.3:+56456614 MS.gene009841:CDS
TCTTCGACCAACCATACGAC+CGG 0.541735 5.3:+56455940 MS.gene009841:CDS
GGGTGAGCCCCAGTTAGAAA+AGG 0.542739 5.3:-56456331 None:intergenic
ACTATGAACCAGATGTGTCT+TGG 0.542920 5.3:+56456478 MS.gene009841:CDS
ACTGCTTCTACATTAGAGAT+GGG 0.544371 5.3:+56455592 MS.gene009841:CDS
TACAATTGCTCCAACCAAGC+CGG 0.546247 5.3:-56456609 None:intergenic
GTCAAAGGCGGCGTTGAGGA+GGG 0.547086 5.3:-56455661 None:intergenic
AGTTTGCTTCTTTGCTCACA+AGG 0.547575 5.3:+56455501 MS.gene009841:CDS
ATCTGGGGAGTTATCTGCGT+CGG 0.549229 5.3:+56456203 MS.gene009841:CDS
CAAAGTGAAGCCTTGTTCAA+GGG 0.550059 5.3:+56455249 MS.gene009841:CDS
CACGATCCTTTCCGAAACTC+AGG 0.550059 5.3:-56455370 None:intergenic
CTATCTTCAATCAAAGGAAG+AGG 0.552090 5.3:+56455026 MS.gene009841:CDS
GCGAAAGCAGCAACTACTGA+TGG 0.552696 5.3:+56455846 MS.gene009841:CDS
CCCAGATGGATCAAACCTAT+AGG 0.553523 5.3:-56456187 None:intergenic
CTTCGACCAACCATACGACC+GGG 0.555663 5.3:+56455941 MS.gene009841:CDS
AGCCGTGTCTTATACTGCGC+AGG 0.561388 5.3:-56455448 None:intergenic
CTGTAATATGATCTAGGAGA+TGG 0.561399 5.3:-56455568 None:intergenic
GCAAAATCTTGATAATCTCA+GGG 0.561505 5.3:-56454925 None:intergenic
AGTCAAAGGCGGCGTTGAGG+AGG 0.561805 5.3:-56455662 None:intergenic
TCAATGTCATCAATTGTCTC+CGG 0.563566 5.3:-56455106 None:intergenic
TTCATCCAGGGGAAAATGCA+AGG 0.563820 5.3:+56455305 MS.gene009841:CDS
AGAACCGGTAGAAGCATACA+AGG 0.565045 5.3:-56455539 None:intergenic
CCCAAAAGCAGATTGAAGAC+TGG 0.566689 5.3:+56455766 MS.gene009841:CDS
GGGTTGGTTTGTGGTATGGA+AGG 0.567780 5.3:+56454720 MS.gene009841:CDS
TCTAACTGGGGCTCACCCGA+TGG 0.570083 5.3:+56456336 MS.gene009841:CDS
GGTCGGAGATCCAATCGCAC+TGG 0.570216 5.3:-56456166 None:intergenic
TCAGCTGCAGATGATGTGGT+TGG 0.573637 5.3:+56454656 MS.gene009841:CDS
GAGGGTGGTATCAAAACAGA+TGG 0.574942 5.3:-56455643 None:intergenic
TGAAGAGAGGACACCTCTCA+TGG 0.576333 5.3:+56454769 MS.gene009841:CDS
ACAAATTAGGTTATGAAGAG+AGG 0.576520 5.3:+56454756 MS.gene009841:CDS
AGTGTCCCTTTGTTCATCCA+GGG 0.576667 5.3:+56455293 MS.gene009841:CDS
CAATCGCACTGGAAGTGGAA+TGG 0.578710 5.3:-56456155 None:intergenic
ATGGAATGATTCCAGTTGGA+AGG 0.579291 5.3:-56455892 None:intergenic
CCTTTCCGAAACTCAGGACA+AGG 0.580350 5.3:-56455364 None:intergenic
TGAGAATAGGCCCTTGAACA+AGG 0.580719 5.3:-56455259 None:intergenic
GTATAAGACACGGCTTTGCA+AGG 0.581068 5.3:+56455456 MS.gene009841:CDS
ATGATTCCAGTTGGAAGGAG+AGG 0.583775 5.3:-56455887 None:intergenic
CAGCGATACAATCAAATCAA+CGG 0.585020 5.3:-56454996 None:intergenic
AGTCCAATCCAAATTTCCAT+CGG 0.586204 5.3:-56456352 None:intergenic
ATGAAGAGCAGTAGCACCAT+CGG 0.586647 5.3:-56454873 None:intergenic
ATGTGAATGGGAATAAAGAA+GGG 0.588204 5.3:+56454600 MS.gene009841:CDS
GACGCAGATAACTCCCCAGA+TGG 0.589603 5.3:-56456201 None:intergenic
CCTTGTCCTGAGTTTCGGAA+AGG 0.590059 5.3:+56455364 MS.gene009841:CDS
AGGCATGGAATGATTCCAGT+TGG 0.590112 5.3:-56455896 None:intergenic
CCGTTGCTGCTGCAGCCATG+TGG 0.592506 5.3:+56455704 MS.gene009841:CDS
ATCTGAATTAATATCTCTAG+CGG 0.595917 5.3:-56455794 None:intergenic
CGTATACATCCTAAACTCAT+CGG 0.599276 5.3:-56455224 None:intergenic
TGGGGTGTGAGTATGTGAAT+GGG 0.600624 5.3:+56454588 MS.gene009841:CDS
ATGACATTGACGAATATCAA+AGG 0.602422 5.3:+56455119 MS.gene009841:CDS
AATTTGGATTGGACTTCACA+CGG 0.603583 5.3:+56456360 MS.gene009841:CDS
CAGCATCAAGTGAAATTCTG+TGG 0.605687 5.3:-56456047 None:intergenic
TGCTACTGCTCTTCATTGTG+CGG 0.605703 5.3:+56454880 MS.gene009841:CDS
AAAAGATGGACTGTTAGGCA+TGG 0.606790 5.3:-56455911 None:intergenic
GTTGGAAGGAGAGGAAAGAC+CGG 0.607081 5.3:-56455878 None:intergenic
GGACGTATTTGGATTCCAGT+CGG 0.609277 5.3:-56456099 None:intergenic
GCAACTACTGATGGATGAGA+TGG 0.611701 5.3:+56455855 MS.gene009841:CDS
CTACTGATGGATGAGATGGC+CGG 0.611784 5.3:+56455859 MS.gene009841:CDS
GAGAATGAAGCTCAGAATGA+CGG 0.613447 5.3:-56456293 None:intergenic
AGCCAGAGCTTTATCGAGCG+CGG 0.613507 5.3:+56456261 MS.gene009841:CDS
TGGATGAACAAAGGGACACT+CGG 0.617153 5.3:-56455290 None:intergenic
AATCGTTCTAGTGGATCCGA+TGG 0.617627 5.3:+56454857 MS.gene009841:CDS
TACATAGCAGCAACCATGAG+AGG 0.626294 5.3:-56454782 None:intergenic
TCTCAGTTACAATCTCCGAC+TGG 0.629713 5.3:+56456084 MS.gene009841:CDS
GTCAAAAGGATTTGATCATG+GGG 0.630254 5.3:+56454570 MS.gene009841:CDS
GTGTCCCTTTGTTCATCCAG+GGG 0.633464 5.3:+56455294 MS.gene009841:CDS
ATCAACGGGTCGGTTACCGT+TGG 0.633957 5.3:-56454981 None:intergenic
CGAGGGTTGCGATGTTGATG+GGG 0.634282 5.3:+56454700 MS.gene009841:CDS
CTTCATTGTGCGGTTGTTGG+GGG 0.635961 5.3:+56454890 MS.gene009841:CDS
GATGCTCCAGATGAAGTCAA+AGG 0.639371 5.3:-56455676 None:intergenic
GATGGATCAAACCTATAGGT+CGG 0.639738 5.3:-56456183 None:intergenic
CTAAACTGATGAGATTCTTG+CGG 0.645883 5.3:-56456528 None:intergenic
AAAGGCGGCGTTGAGGAGGG+TGG 0.647882 5.3:-56455658 None:intergenic
GCTAGTGCTGTTGATGCCAA+CGG 0.653244 5.3:+56454965 MS.gene009841:CDS
ATTAGACGGTGTCTGCCACA+TGG 0.653248 5.3:-56455719 None:intergenic
TAAAGAAGGGCAGTATCATG+AGG 0.655064 5.3:+56454613 MS.gene009841:CDS
TGGAGTTAAAGGAGTACTGG+TGG 0.655843 5.3:-56456430 None:intergenic
TGAAGTCAAAGGCGGCGTTG+AGG 0.657176 5.3:-56455665 None:intergenic
GAGAAGAACTGAATAAGCTG+AGG 0.666361 5.3:+56456382 MS.gene009841:CDS
TTCGACCAACCATACGACCG+GGG 0.672912 5.3:+56455942 MS.gene009841:CDS
TGCTTAGGGTTGAAACTCAG+CGG 0.673294 5.3:+56455824 MS.gene009841:CDS
AACCGGTAGAAGCATACAAG+GGG 0.673738 5.3:-56455537 None:intergenic
ATACAATCAAATCAACGGGT+CGG 0.676517 5.3:-56454991 None:intergenic
CAAAATCTTGATAATCTCAG+GGG 0.681248 5.3:-56454924 None:intergenic
GAACCGGTAGAAGCATACAA+GGG 0.683674 5.3:-56455538 None:intergenic
CTATAGGTTTGATCCATCTG+GGG 0.685733 5.3:+56456188 MS.gene009841:CDS
CTGCAGCGCCATCTTAACAA+CGG 0.687526 5.3:+56456573 MS.gene009841:CDS
ATCCTGCGCAGTATAAGACA+CGG 0.689588 5.3:+56455446 MS.gene009841:CDS
GATTCTTGTGACTATGCACA+CGG 0.716065 5.3:+56455403 MS.gene009841:CDS
CTTTCCGAAACTCAGGACAA+GGG 0.724035 5.3:-56455363 None:intergenic
GTAGGGATCGAAACATTAGA+CGG 0.728881 5.3:-56455733 None:intergenic
GCTCCAGATGAAGTCAAAGG+CGG 0.734283 5.3:-56455673 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAAAACTTGTCAAA+AGG + chr5.3:56454556-56454575 MS.gene009841:CDS 20.0%
! AAAAAATGTGATTGAAAACG+AGG + chr5.3:56454682-56454701 MS.gene009841:CDS 25.0%
! AAAAATGTGATTGAAAACGA+GGG + chr5.3:56454683-56454702 MS.gene009841:CDS 25.0%
! ATCTGAATTAATATCTCTAG+CGG - chr5.3:56455797-56455816 None:intergenic 25.0%
AAAATGTCTTCAAGGTTTGT+AGG - chr5.3:56455994-56456013 None:intergenic 30.0%
ACAAATTAGGTTATGAAGAG+AGG + chr5.3:56454756-56454775 MS.gene009841:CDS 30.0%
ATGACATTGACGAATATCAA+AGG + chr5.3:56455119-56455138 MS.gene009841:CDS 30.0%
ATGTGAATGGGAATAAAGAA+GGG + chr5.3:56454600-56454619 MS.gene009841:CDS 30.0%
ATTCAGATATTGCAATGCTT+AGG + chr5.3:56455809-56455828 MS.gene009841:CDS 30.0%
CAGCTATAATGATATTTCCT+TGG - chr5.3:56455340-56455359 None:intergenic 30.0%
CCAATTCTATCTTCAATCAA+AGG + chr5.3:56455020-56455039 MS.gene009841:CDS 30.0%
CCTTTGATTGAAGATAGAAT+TGG - chr5.3:56455023-56455042 None:intergenic 30.0%
TATATCCCATTCTTAATGTC+TGG - chr5.3:56455199-56455218 None:intergenic 30.0%
TATGTGAATGGGAATAAAGA+AGG + chr5.3:56454599-56454618 MS.gene009841:CDS 30.0%
TGGAATTTATGCAACATTGA+TGG - chr5.3:56456030-56456049 None:intergenic 30.0%
TGTCAAAAGGATTTGATCAT+GGG + chr5.3:56454569-56454588 MS.gene009841:CDS 30.0%
TTCAGATATTGCAATGCTTA+GGG + chr5.3:56455810-56455829 MS.gene009841:CDS 30.0%
TTGGGTTAATTCACTTGTAA+AGG + chr5.3:56456497-56456516 MS.gene009841:CDS 30.0%
TTGTCAAAAGGATTTGATCA+TGG + chr5.3:56454568-56454587 MS.gene009841:CDS 30.0%
! ACAAACCTTGAAGACATTTT+CGG + chr5.3:56455994-56456013 MS.gene009841:CDS 30.0%
! AGCAAAATCTTGATAATCTC+AGG - chr5.3:56454929-56454948 None:intergenic 30.0%
! CAAAATCTTGATAATCTCAG+GGG - chr5.3:56454927-56454946 None:intergenic 30.0%
! GCAAAATCTTGATAATCTCA+GGG - chr5.3:56454928-56454947 None:intergenic 30.0%
!! AAAGTTGGTTCGAACAAATT+AGG + chr5.3:56454743-56454762 MS.gene009841:CDS 30.0%
!! TATATAGTACCGATGAGTTT+AGG + chr5.3:56455215-56455234 MS.gene009841:CDS 30.0%
AATCTGTTCCGTTGTTAAGA+TGG - chr5.3:56456584-56456603 None:intergenic 35.0%
ACTGCTTCTACATTAGAGAT+GGG + chr5.3:56455592-56455611 MS.gene009841:CDS 35.0%
AGCGATACAATCAAATCAAC+GGG - chr5.3:56454998-56455017 None:intergenic 35.0%
AGTCCAATCCAAATTTCCAT+CGG - chr5.3:56456355-56456374 None:intergenic 35.0%
ATACAATCAAATCAACGGGT+CGG - chr5.3:56454994-56455013 None:intergenic 35.0%
CAGCGATACAATCAAATCAA+CGG - chr5.3:56454999-56455018 None:intergenic 35.0%
CGTATACATCCTAAACTCAT+CGG - chr5.3:56455227-56455246 None:intergenic 35.0%
CTAAACTGATGAGATTCTTG+CGG - chr5.3:56456531-56456550 None:intergenic 35.0%
CTATCTTCAATCAAAGGAAG+AGG + chr5.3:56455026-56455045 MS.gene009841:CDS 35.0%
CTCTTCCAGACATTAAGAAT+GGG + chr5.3:56455191-56455210 MS.gene009841:CDS 35.0%
CTGTAATATGATCTAGGAGA+TGG - chr5.3:56455571-56455590 None:intergenic 35.0%
CTTATATTCTTGGAACAGGT+CGG + chr5.3:56454825-56454844 MS.gene009841:CDS 35.0%
GATTCATATTCGGACGTATT+TGG - chr5.3:56456113-56456132 None:intergenic 35.0%
GCAGTACTGTAATATGATCT+AGG - chr5.3:56455577-56455596 None:intergenic 35.0%
GGTGTATCTGCTTATATTCT+TGG + chr5.3:56454815-56454834 MS.gene009841:CDS 35.0%
GTCAAAAGGATTTGATCATG+GGG + chr5.3:56454570-56454589 MS.gene009841:CDS 35.0%
GTTGATGTTAATCGTTCTAG+TGG + chr5.3:56454848-56454867 MS.gene009841:CDS 35.0%
TACTGCTTCTACATTAGAGA+TGG + chr5.3:56455591-56455610 MS.gene009841:CDS 35.0%
TCAATGTCATCAATTGTCTC+CGG - chr5.3:56455109-56455128 None:intergenic 35.0%
TCTCTTCCAGACATTAAGAA+TGG + chr5.3:56455190-56455209 MS.gene009841:CDS 35.0%
TCTGCTTATATTCTTGGAAC+AGG + chr5.3:56454821-56454840 MS.gene009841:CDS 35.0%
TTATATTCTTGGAACAGGTC+GGG + chr5.3:56454826-56454845 MS.gene009841:CDS 35.0%
! AATTTGGATTGGACTTCACA+CGG + chr5.3:56456360-56456379 MS.gene009841:CDS 35.0%
! CAAACCTTGAAGACATTTTC+GGG + chr5.3:56455995-56456014 MS.gene009841:CDS 35.0%
! CAAGATTTTGCTTGATGCAT+CGG + chr5.3:56454937-56454956 MS.gene009841:CDS 35.0%
! CTGAGGAAATCATCTTCTTT+TGG + chr5.3:56456399-56456418 MS.gene009841:CDS 35.0%
! TTAGCGTTGAAGATCAGAAA+AGG + chr5.3:56456547-56456566 MS.gene009841:CDS 35.0%
!! TGCAGATGCTGATTCATATT+CGG - chr5.3:56456123-56456142 None:intergenic 35.0%
!!! GGATAATCTTTTGAAACACG+AGG - chr5.3:56455160-56455179 None:intergenic 35.0%
ACCTATAGGTTTGATCCATC+TGG + chr5.3:56456186-56456205 MS.gene009841:CDS 40.0%
ACTATGAACCAGATGTGTCT+TGG + chr5.3:56456478-56456497 MS.gene009841:CDS 40.0%
AGAATTTCACTTGATGCTGC+AGG + chr5.3:56456051-56456070 MS.gene009841:CDS 40.0%
ATGGAATGATTCCAGTTGGA+AGG - chr5.3:56455895-56455914 None:intergenic 40.0%
ATGGAGAACCAAGTGACATT+GGG - chr5.3:56455627-56455646 None:intergenic 40.0%
CAGCATCAAGTGAAATTCTG+TGG - chr5.3:56456050-56456069 None:intergenic 40.0%
CAGCATCTGCAACAAAACTA+TGG + chr5.3:56456132-56456151 MS.gene009841:CDS 40.0%
CCTATAGGTTTGATCCATCT+GGG + chr5.3:56456187-56456206 MS.gene009841:CDS 40.0%
CTATAGGTTTGATCCATCTG+GGG + chr5.3:56456188-56456207 MS.gene009841:CDS 40.0%
CTATGAACCAGATGTGTCTT+GGG + chr5.3:56456479-56456498 MS.gene009841:CDS 40.0%
GAATTAACCCAAGACACATC+TGG - chr5.3:56456489-56456508 None:intergenic 40.0%
GAGAAGAACTGAATAAGCTG+AGG + chr5.3:56456382-56456401 MS.gene009841:CDS 40.0%
GAGAATGAAGCTCAGAATGA+CGG - chr5.3:56456296-56456315 None:intergenic 40.0%
GATGGATCAAACCTATAGGT+CGG - chr5.3:56456186-56456205 None:intergenic 40.0%
GATTCTTGTGACTATGCACA+CGG + chr5.3:56455403-56455422 MS.gene009841:CDS 40.0%
GTAGGGATCGAAACATTAGA+CGG - chr5.3:56455736-56455755 None:intergenic 40.0%
GTCCAATCCAAATTTCCATC+GGG - chr5.3:56456354-56456373 None:intergenic 40.0%
GTCGAAGAAACCGAAAAAGA+TGG - chr5.3:56455928-56455947 None:intergenic 40.0%
TAAAGAAGGGCAGTATCATG+AGG + chr5.3:56454613-56454632 MS.gene009841:CDS 40.0%
TCAATTAGCCCAATGTCACT+TGG + chr5.3:56455616-56455635 MS.gene009841:CDS 40.0%
TCAGACATGTCTTCTGTTTC+CGG + chr5.3:56455087-56455106 MS.gene009841:CDS 40.0%
TTGGTTGGAGCAATTGTACA+TGG + chr5.3:56456614-56456633 MS.gene009841:CDS 40.0%
TTGTGGTATGGAAGGAAAGT+TGG + chr5.3:56454728-56454747 MS.gene009841:CDS 40.0%
! AGTTTGCTTCTTTGCTCACA+AGG + chr5.3:56455501-56455520 MS.gene009841:CDS 40.0%
! ATGCTACAAGCTCTTTTGGA+GGG + chr5.3:56455049-56455068 MS.gene009841:CDS 40.0%
! ATTTTCAGCTGCAGATGATG+TGG + chr5.3:56454652-56454671 MS.gene009841:CDS 40.0%
! ATTTTCCCCTGGATGAACAA+AGG - chr5.3:56455302-56455321 None:intergenic 40.0%
! CCTTATGCCTTTTCTAACTG+GGG + chr5.3:56456324-56456343 MS.gene009841:CDS 40.0%
! CGAAAACCTATTTAGTTCCC+CGG - chr5.3:56455962-56455981 None:intergenic 40.0%
! CGGGGAACTAAATAGGTTTT+CGG + chr5.3:56455960-56455979 MS.gene009841:CDS 40.0%
! GCCTAACAGTCCATCTTTTT+CGG + chr5.3:56455915-56455934 MS.gene009841:CDS 40.0%
! GCCTTATGCCTTTTCTAACT+GGG + chr5.3:56456323-56456342 MS.gene009841:CDS 40.0%
! GGAACTAAATAGGTTTTCGG+GGG + chr5.3:56455963-56455982 MS.gene009841:CDS 40.0%
! GGGAACTAAATAGGTTTTCG+GGG + chr5.3:56455962-56455981 MS.gene009841:CDS 40.0%
! GGGGAACTAAATAGGTTTTC+GGG + chr5.3:56455961-56455980 MS.gene009841:CDS 40.0%
! TCCAGTCTTCAATCTGCTTT+TGG - chr5.3:56455770-56455789 None:intergenic 40.0%
! TTTTCCCCTGGATGAACAAA+GGG - chr5.3:56455301-56455320 None:intergenic 40.0%
!! AAAAGATGGACTGTTAGGCA+TGG - chr5.3:56455914-56455933 None:intergenic 40.0%
!! ACCGAAAAAGATGGACTGTT+AGG - chr5.3:56455919-56455938 None:intergenic 40.0%
!! AGCCTTATGCCTTTTCTAAC+TGG + chr5.3:56456322-56456341 MS.gene009841:CDS 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr5.3:56455249-56455268 MS.gene009841:CDS 40.0%
!! CCAGTCTTCAATCTGCTTTT+GGG - chr5.3:56455769-56455788 None:intergenic 40.0%
!! CGTTGATTTGATTGTATCGC+TGG + chr5.3:56454997-56455016 MS.gene009841:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr5.3:56455248-56455267 MS.gene009841:CDS 40.0%
AGGAGATGGAATAGCAGAAC+CGG - chr5.3:56455557-56455576 None:intergenic 45.0%
AGGCATGGAATGATTCCAGT+TGG - chr5.3:56455899-56455918 None:intergenic 45.0%
AGTGTCCCTTTGTTCATCCA+GGG + chr5.3:56455293-56455312 MS.gene009841:CDS 45.0%
ATACGACCGGGGAACTAAAT+AGG + chr5.3:56455953-56455972 MS.gene009841:CDS 45.0%
ATCCTGCGCAGTATAAGACA+CGG + chr5.3:56455446-56455465 MS.gene009841:CDS 45.0%
ATGAAGAGCAGTAGCACCAT+CGG - chr5.3:56454876-56454895 None:intergenic 45.0%
ATGATTCCAGTTGGAAGGAG+AGG - chr5.3:56455890-56455909 None:intergenic 45.0%
ATGGGGTGTGAGTATGTGAA+TGG + chr5.3:56454587-56454606 MS.gene009841:CDS 45.0%
CAACGGAACAGATTCGATTC+CGG + chr5.3:56456590-56456609 MS.gene009841:CDS 45.0%
CAAGGGCCTATTCTCATGAT+TGG + chr5.3:56455266-56455285 MS.gene009841:CDS 45.0%
CACCCGATGGAAATTTGGAT+TGG + chr5.3:56456349-56456368 MS.gene009841:CDS 45.0%
CCCAAAAGCAGATTGAAGAC+TGG + chr5.3:56455766-56455785 MS.gene009841:CDS 45.0%
CCCAGATGGATCAAACCTAT+AGG - chr5.3:56456190-56456209 None:intergenic 45.0%
CTCATGGTTGCTGCTATGTA+TGG + chr5.3:56454785-56454804 MS.gene009841:CDS 45.0%
CTCGGTCCAATCATGAGAAT+AGG - chr5.3:56455275-56455294 None:intergenic 45.0%
CTCTTCATTGTGCGGTTGTT+GGG + chr5.3:56454888-56454907 MS.gene009841:CDS 45.0%
CTTCTTTGCTCACAAGGTTG+AGG + chr5.3:56455507-56455526 MS.gene009841:CDS 45.0%
CTTTCCGAAACTCAGGACAA+GGG - chr5.3:56455366-56455385 None:intergenic 45.0%
GAGACCCGAAAATGTCTTCA+AGG - chr5.3:56456002-56456021 None:intergenic 45.0%
GAGGGTGGTATCAAAACAGA+TGG - chr5.3:56455646-56455665 None:intergenic 45.0%
GATGCTCCAGATGAAGTCAA+AGG - chr5.3:56455679-56455698 None:intergenic 45.0%
GATGGAGAACCAAGTGACAT+TGG - chr5.3:56455628-56455647 None:intergenic 45.0%
GCTGCTATGTATGGAAGCTT+GGG + chr5.3:56454794-56454813 MS.gene009841:CDS 45.0%
GGACGTATTTGGATTCCAGT+CGG - chr5.3:56456102-56456121 None:intergenic 45.0%
GGAGCAATTGTACATGGATC+AGG + chr5.3:56456620-56456639 MS.gene009841:CDS 45.0%
GTATAAGACACGGCTTTGCA+AGG + chr5.3:56455456-56455475 MS.gene009841:CDS 45.0%
TACAATTGCTCCAACCAAGC+CGG - chr5.3:56456612-56456631 None:intergenic 45.0%
TACATAGCAGCAACCATGAG+AGG - chr5.3:56454785-56454804 None:intergenic 45.0%
TCTCAGTTACAATCTCCGAC+TGG + chr5.3:56456084-56456103 MS.gene009841:CDS 45.0%
TCTGGAAGAGAGACATCAAC+AGG - chr5.3:56455181-56455200 None:intergenic 45.0%
TCTTCATTGTGCGGTTGTTG+GGG + chr5.3:56454889-56454908 MS.gene009841:CDS 45.0%
TGAGAATAGGCCCTTGAACA+AGG - chr5.3:56455262-56455281 None:intergenic 45.0%
TGCTACTGCTCTTCATTGTG+CGG + chr5.3:56454880-56454899 MS.gene009841:CDS 45.0%
TGCTGCTATGTATGGAAGCT+TGG + chr5.3:56454793-56454812 MS.gene009841:CDS 45.0%
TGCTTAGGGTTGAAACTCAG+CGG + chr5.3:56455824-56455843 MS.gene009841:CDS 45.0%
TGGATGAACAAAGGGACACT+CGG - chr5.3:56455293-56455312 None:intergenic 45.0%
TGGGGTGTGAGTATGTGAAT+GGG + chr5.3:56454588-56454607 MS.gene009841:CDS 45.0%
TTCATCCAGGGGAAAATGCA+AGG + chr5.3:56455305-56455324 MS.gene009841:CDS 45.0%
TTTAACTCCAGCTGCAGCTA+GGG + chr5.3:56456443-56456462 MS.gene009841:CDS 45.0%
! AACCGGTAGAAGCATACAAG+GGG - chr5.3:56455540-56455559 None:intergenic 45.0%
! AATCGTTCTAGTGGATCCGA+TGG + chr5.3:56454857-56454876 MS.gene009841:CDS 45.0%
! AGAACCGGTAGAAGCATACA+AGG - chr5.3:56455542-56455561 None:intergenic 45.0%
! AGCTGGAGTTAAAGGAGTAC+TGG - chr5.3:56456436-56456455 None:intergenic 45.0%
! CCCCAGTTAGAAAAGGCATA+AGG - chr5.3:56456327-56456346 None:intergenic 45.0%
! GAAAAGGCATAAGGCTTAGC+AGG - chr5.3:56456318-56456337 None:intergenic 45.0%
! GAACCGGTAGAAGCATACAA+GGG - chr5.3:56455541-56455560 None:intergenic 45.0%
! GAGCTGCTGCATTTTCAAAG+CGG + chr5.3:56456238-56456257 MS.gene009841:CDS 45.0%
! GAGGATGCTACAAGCTCTTT+TGG + chr5.3:56455045-56455064 MS.gene009841:CDS 45.0%
! GATGCTACAAGCTCTTTTGG+AGG + chr5.3:56455048-56455067 MS.gene009841:CDS 45.0%
! GATTTTGCTTGATGCATCGG+CGG + chr5.3:56454940-56454959 MS.gene009841:CDS 45.0%
! GCAACTACTGATGGATGAGA+TGG + chr5.3:56455855-56455874 MS.gene009841:CDS 45.0%
! TATTTAGTTCCCCGGTCGTA+TGG - chr5.3:56455954-56455973 None:intergenic 45.0%
!! ATCTGCTTTTGGGAAGCTGA+AGG - chr5.3:56455759-56455778 None:intergenic 45.0%
!! ATGTTGATGGGGTTGGTTTG+TGG + chr5.3:56454711-56454730 MS.gene009841:CDS 45.0%
!! TCTGCTTTTGGGAAGCTGAA+GGG - chr5.3:56455758-56455777 None:intergenic 45.0%
!! TGGAGTTAAAGGAGTACTGG+TGG - chr5.3:56456433-56456452 None:intergenic 45.0%
!! TTTTGGGAAGCTGAAGGGTA+GGG - chr5.3:56455753-56455772 None:intergenic 45.0%
!!! CACACGGTATTTTTGAGTGC+TGG + chr5.3:56455419-56455438 MS.gene009841:CDS 45.0%
AACGAGGGTTGCGATGTTGA+TGG + chr5.3:56454698-56454717 MS.gene009841:CDS 50.0%
ACACGGCTTTGCAAGGATGA+AGG + chr5.3:56455463-56455482 MS.gene009841:CDS 50.0%
ACGAGGGTTGCGATGTTGAT+GGG + chr5.3:56454699-56454718 MS.gene009841:CDS 50.0%
AGATCCAATCGCACTGGAAG+TGG - chr5.3:56456163-56456182 None:intergenic 50.0%
ATCTGGGGAGTTATCTGCGT+CGG + chr5.3:56456203-56456222 MS.gene009841:CDS 50.0%
ATTAGACGGTGTCTGCCACA+TGG - chr5.3:56455722-56455741 None:intergenic 50.0%
CAATCGCACTGGAAGTGGAA+TGG - chr5.3:56456158-56456177 None:intergenic 50.0%
CACGATCCTTTCCGAAACTC+AGG - chr5.3:56455373-56455392 None:intergenic 50.0%
CATTCCACTTCCAGTGCGAT+TGG + chr5.3:56456156-56456175 MS.gene009841:CDS 50.0%
CCTTGTCCTGAGTTTCGGAA+AGG + chr5.3:56455364-56455383 MS.gene009841:CDS 50.0%
CCTTTCCGAAACTCAGGACA+AGG - chr5.3:56455367-56455386 None:intergenic 50.0%
CGATTGGATCTCCGACCTAT+AGG + chr5.3:56456172-56456191 MS.gene009841:CDS 50.0%
CGGAAAGGATCGTGCAGTAA+AGG + chr5.3:56455379-56455398 MS.gene009841:CDS 50.0%
CTAGCTGCAGCTGGAGTTAA+AGG - chr5.3:56456444-56456463 None:intergenic 50.0%
CTGCAGCGCCATCTTAACAA+CGG + chr5.3:56456573-56456592 MS.gene009841:CDS 50.0%
CTTCATTGTGCGGTTGTTGG+GGG + chr5.3:56454890-56454909 MS.gene009841:CDS 50.0%
CTTTAACTCCAGCTGCAGCT+AGG + chr5.3:56456442-56456461 MS.gene009841:CDS 50.0%
GAACAGATTCGATTCCGGCT+TGG + chr5.3:56456595-56456614 MS.gene009841:CDS 50.0%
GAGTGTCCCTTTGTTCATCC+AGG + chr5.3:56455292-56455311 MS.gene009841:CDS 50.0%
GCGAAAGCAGCAACTACTGA+TGG + chr5.3:56455846-56455865 MS.gene009841:CDS 50.0%
GCTCCAGATGAAGTCAAAGG+CGG - chr5.3:56455676-56455695 None:intergenic 50.0%
GCTCTTCATTGTGCGGTTGT+TGG + chr5.3:56454887-56454906 MS.gene009841:CDS 50.0%
GTCTTTCCTCTCCTTCCAAC+TGG + chr5.3:56455881-56455900 MS.gene009841:CDS 50.0%
GTGTCCCTTGTCCTGAGTTT+CGG + chr5.3:56455359-56455378 MS.gene009841:CDS 50.0%
GTGTCCCTTTGTTCATCCAG+GGG + chr5.3:56455294-56455313 MS.gene009841:CDS 50.0%
GTTGGAAGGAGAGGAAAGAC+CGG - chr5.3:56455881-56455900 None:intergenic 50.0%
TCAGCTGCAGATGATGTGGT+TGG + chr5.3:56454656-56454675 MS.gene009841:CDS 50.0%
TCTTCGACCAACCATACGAC+CGG + chr5.3:56455940-56455959 MS.gene009841:CDS 50.0%
TGAAGAGAGGACACCTCTCA+TGG + chr5.3:56454769-56454788 MS.gene009841:CDS 50.0%
! CTACTGATGGATGAGATGGC+CGG + chr5.3:56455859-56455878 MS.gene009841:CDS 50.0%
! GCTAGTGCTGTTGATGCCAA+CGG + chr5.3:56454965-56454984 MS.gene009841:CDS 50.0%
!! AGATTCGATTCCGGCTTGGT+TGG + chr5.3:56456599-56456618 MS.gene009841:CDS 50.0%
!! CAAGCTCTTTTGGAGGGTAC+TGG + chr5.3:56455055-56455074 MS.gene009841:CDS 50.0%
!! CTTTTGGGAAGCTGAAGGGT+AGG - chr5.3:56455754-56455773 None:intergenic 50.0%
!! GATGGGGTTGGTTTGTGGTA+TGG + chr5.3:56454716-56454735 MS.gene009841:CDS 50.0%
!! GGGTTGGTTTGTGGTATGGA+AGG + chr5.3:56454720-56454739 MS.gene009841:CDS 50.0%
AGCCGTGTCTTATACTGCGC+AGG - chr5.3:56455451-56455470 None:intergenic 55.0%
ATCAACGGGTCGGTTACCGT+TGG - chr5.3:56454984-56455003 None:intergenic 55.0%
CGAGGGTTGCGATGTTGATG+GGG + chr5.3:56454700-56454719 MS.gene009841:CDS 55.0%
CGCCCCTTGTATGCTTCTAC+CGG + chr5.3:56455535-56455554 MS.gene009841:CDS 55.0%
CTTCGACCAACCATACGACC+GGG + chr5.3:56455941-56455960 MS.gene009841:CDS 55.0%
GACGCAGATAACTCCCCAGA+TGG - chr5.3:56456204-56456223 None:intergenic 55.0%
GGGCTCACCCGATGGAAATT+TGG + chr5.3:56456344-56456363 MS.gene009841:CDS 55.0%
GGGTGAGCCCCAGTTAGAAA+AGG - chr5.3:56456334-56456353 None:intergenic 55.0%
TAGTTCCCCGGTCGTATGGT+TGG - chr5.3:56455950-56455969 None:intergenic 55.0%
TGAAGTCAAAGGCGGCGTTG+AGG - chr5.3:56455668-56455687 None:intergenic 55.0%
TTCGACCAACCATACGACCG+GGG + chr5.3:56455942-56455961 MS.gene009841:CDS 55.0%
! ACGCCGCCTTTGACTTCATC+TGG + chr5.3:56455670-56455689 MS.gene009841:CDS 55.0%
! AGCCAGAGCTTTATCGAGCG+CGG + chr5.3:56456261-56456280 MS.gene009841:CDS 55.0%
! GGTTGCGATGTTGATGGGGT+TGG + chr5.3:56454704-56454723 MS.gene009841:CDS 55.0%
!!! GCTCTTTTGGAGGGTACTGG+CGG + chr5.3:56455058-56455077 MS.gene009841:CDS 55.0%
ATGCAAGGCGACGCGATCCA+AGG + chr5.3:56455320-56455339 MS.gene009841:CDS 60.0%
CACATGGCTGCAGCAGCAAC+GGG - chr5.3:56455706-56455725 None:intergenic 60.0%
CACCGCGCTCGATAAAGCTC+TGG - chr5.3:56456266-56456285 None:intergenic 60.0%
CCACATGGCTGCAGCAGCAA+CGG - chr5.3:56455707-56455726 None:intergenic 60.0%
CTTGATGCTGCAGGAGCAGC+AGG + chr5.3:56456060-56456079 MS.gene009841:CDS 60.0%
GGTCGGAGATCCAATCGCAC+TGG - chr5.3:56456169-56456188 None:intergenic 60.0%
TCTAACTGGGGCTCACCCGA+TGG + chr5.3:56456336-56456355 MS.gene009841:CDS 60.0%
! AGTCAAAGGCGGCGTTGAGG+AGG - chr5.3:56455665-56455684 None:intergenic 60.0%
! CGTCGCCTTGCATTTTCCCC+TGG - chr5.3:56455313-56455332 None:intergenic 60.0%
! GTCAAAGGCGGCGTTGAGGA+GGG - chr5.3:56455664-56455683 None:intergenic 60.0%
CCGTTGCTGCTGCAGCCATG+TGG + chr5.3:56455704-56455723 MS.gene009841:CDS 65.0%
TCCAGCTGCAGCTAGGGCAC+AGG + chr5.3:56456449-56456468 MS.gene009841:CDS 65.0%
TCCTGTGCCCTAGCTGCAGC+TGG - chr5.3:56456453-56456472 None:intergenic 65.0%
! AAAGGCGGCGTTGAGGAGGG+TGG - chr5.3:56455661-56455680 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.3 gene 56454542 56456659 56454542 ID=MS.gene009841
chr5.3 mRNA 56454542 56456659 56454542 ID=MS.gene009841.t1;Parent=MS.gene009841
chr5.3 exon 56454542 56456659 56454542 ID=MS.gene009841.t1.exon1;Parent=MS.gene009841.t1
chr5.3 CDS 56454542 56456659 56454542 ID=cds.MS.gene009841.t1;Parent=MS.gene009841.t1
Gene Sequence

>MS.gene009841

ATGTGCGGTGATTCTAAGAAAAAAACTTGTCAAAAGGATTTGATCATGGGGTGTGAGTATGTGAATGGGAATAAAGAAGGGCAGTATCATGAGGTTTCTTATTTGCTTGAATTTTCAGCTGCAGATGATGTGGTTGGTTTAAAAAATGTGATTGAAAACGAGGGTTGCGATGTTGATGGGGTTGGTTTGTGGTATGGAAGGAAAGTTGGTTCGAACAAATTAGGTTATGAAGAGAGGACACCTCTCATGGTTGCTGCTATGTATGGAAGCTTGGGTGTATCTGCTTATATTCTTGGAACAGGTCGGGTTGATGTTAATCGTTCTAGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCGGTTGTTGGGGGTTCTGCTGCTTCCCCTGAGATTATCAAGATTTTGCTTGATGCATCGGCGGATGCTAGTGCTGTTGATGCCAACGGTAACCGACCCGTTGATTTGATTGTATCGCTGGCCAATTCTATCTTCAATCAAAGGAAGAGGATGCTACAAGCTCTTTTGGAGGGTACTGGCGGTGCTGATCAGACATGTCTTCTGTTTCCGGAGACAATTGATGACATTGACGAATATCAAAGGCAAGATGTAAACACGCCTCGTGTTTCAAAAGATTATCCTGTTGATGTCTCTCTTCCAGACATTAAGAATGGGATATATAGTACCGATGAGTTTAGGATGTATACGTTCAAAGTGAAGCCTTGTTCAAGGGCCTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTCGGAAAGGATCGTGCAGTAAAGGAGATTCTTGTGACTATGCACACGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATAAGACACGGCTTTGCAAGGATGAAGGTTCATGCATGAGAAGAGTTTGCTTCTTTGCTCACAAGGTTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCTAGATCATATTACAGTACTGCTTCTACATTAGAGATGGGTTCAATTAGCCCAATGTCACTTGGTTCTCCATCTGTTTTGATACCACCCTCCTCAACGCCGCCTTTGACTTCATCTGGAGCATCGTCTCCCGTTGCTGCTGCAGCCATGTGGCAGACACCGTCTAATGTTTCGATCCCTACCCTTCAGCTTCCCAAAAGCAGATTGAAGACTGGAATGACCGCTAGAGATATTAATTCAGATATTGCAATGCTTAGGGTTGAAACTCAGCGGCGAAAGCAGCAACTACTGATGGATGAGATGGCCGGTCTTTCCTCTCCTTCCAACTGGAATCATTCCATGCCTAACAGTCCATCTTTTTCGGTTTCTTCGACCAACCATACGACCGGGGAACTAAATAGGTTTTCGGGGGTGAATCCTACAAACCTTGAAGACATTTTCGGGTCTCTTGATCCATCAATGTTGCATAAATTCCACAGAATTTCACTTGATGCTGCAGGAGCAGCAGGATCTCAGTTACAATCTCCGACTGGAATCCAAATACGTCCGAATATGAATCAGCATCTGCAACAAAACTATGGCCATTCCACTTCCAGTGCGATTGGATCTCCGACCTATAGGTTTGATCCATCTGGGGAGTTATCTGCGTCGGCTTTGAATGCAAGAGCTGCTGCATTTTCAAAGCGGAGCCAGAGCTTTATCGAGCGCGGTGTCACAAACCGTCATTCTGAGCTTCATTCTCCTGCTAAGCCTTATGCCTTTTCTAACTGGGGCTCACCCGATGGAAATTTGGATTGGACTTCACACGGAGAAGAACTGAATAAGCTGAGGAAATCATCTTCTTTTGGATTTCGAACCACCAGTACTCCTTTAACTCCAGCTGCAGCTAGGGCACAGGAAAATGACTATGAACCAGATGTGTCTTGGGTTAATTCACTTGTAAAGGATGCTACACCGCAAGAATCTCATCAGTTTAGCGTTGAAGATCAGAAAAGGAAACTGCAGCGCCATCTTAACAACGGAACAGATTCGATTCCGGCTTGGTTGGAGCAATTGTACATGGATCAGGAGCAAATAGTGCAGTGA
Protein sequence

>MS.gene009841.t1

MCGDSKKKTCQKDLIMGCEYVNGNKEGQYHEVSYLLEFSAADDVVGLKNVIENEGCDVDGVGLWYGRKVGSNKLGYEERTPLMVAAMYGSLGVSAYILGTGRVDVNRSSGSDGATALHCAVVGGSAASPEIIKILLDASADASAVDANGNRPVDLIVSLANSIFNQRKRMLQALLEGTGGADQTCLLFPETIDDIDEYQRQDVNTPRVSKDYPVDVSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYKTRLCKDEGSCMRRVCFFAHKVEELRPLYASTGSAIPSPRSYYSTASTLEMGSISPMSLGSPSVLIPPSSTPPLTSSGASSPVAAAAMWQTPSNVSIPTLQLPKSRLKTGMTARDINSDIAMLRVETQRRKQQLLMDEMAGLSSPSNWNHSMPNSPSFSVSSTNHTTGELNRFSGVNPTNLEDIFGSLDPSMLHKFHRISLDAAGAAGSQLQSPTGIQIRPNMNQHLQQNYGHSTSSAIGSPTYRFDPSGELSASALNARAAAFSKRSQSFIERGVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFGFRTTSTPLTPAAARAQENDYEPDVSWVNSLVKDATPQESHQFSVEDQKRKLQRHLNNGTDSIPAWLEQLYMDQEQIVQ