AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene43828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43828.t1 MTR_5g071070 95.615 707 28 1 1 707 1 704 0.0 1367
MS.gene43828.t1 MTR_5g071070 96.000 625 22 1 83 707 1 622 0.0 1245
MS.gene43828.t1 MTR_5g082830 49.712 694 296 13 30 706 25 682 0.0 637
MS.gene43828.t1 MTR_1g075890 54.141 652 206 14 1 642 1 569 0.0 612
MS.gene43828.t1 MTR_7g092070 42.105 684 289 20 35 663 47 678 7.57e-155 466
MS.gene43828.t1 MTR_3g029590 39.835 728 338 18 33 702 43 728 8.55e-148 448
MS.gene43828.t1 MTR_3g464280 44.204 647 198 17 1 641 1 490 6.91e-143 427
MS.gene43828.t1 MTR_3g464260 48.583 494 167 12 39 529 29 438 1.77e-132 402
MS.gene43828.t1 MTR_3g464260 43.836 146 50 7 571 706 405 528 3.15e-17 85.9
MS.gene43828.t1 MTR_3g070880 46.404 431 161 5 33 462 8 369 6.21e-124 379
MS.gene43828.t1 MTR_3g070880 36.022 186 100 7 515 698 347 515 1.80e-18 89.7
MS.gene43828.t1 MTR_1g050438 40.221 542 256 15 35 538 15 526 9.66e-109 342
MS.gene43828.t1 MTR_0728s0020 40.221 542 256 15 35 538 31 542 3.19e-108 342
MS.gene43828.t1 MTR_3g435590 45.232 367 169 7 32 378 29 383 3.69e-97 308
MS.gene43828.t1 MTR_3g464290 40.326 491 186 18 199 675 68 465 1.91e-79 261
MS.gene43828.t1 MTR_3g435680 41.194 335 139 10 138 451 44 341 1.60e-72 241
MS.gene43828.t1 MTR_3g464270 38.761 436 176 15 229 660 8 356 2.92e-69 231
MS.gene43828.t1 MTR_8g102100 43.498 223 115 3 162 381 21 235 1.47e-54 192
MS.gene43828.t1 MTR_6g090380 57.971 138 48 2 196 332 77 205 6.94e-52 184
MS.gene43828.t1 MTR_3g103960 49.419 172 73 3 202 372 32 190 1.34e-51 181
MS.gene43828.t1 MTR_2g090605 61.261 111 43 0 230 340 77 187 3.29e-47 172
MS.gene43828.t1 MTR_4g078660 57.009 107 46 0 226 332 56 162 4.90e-44 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene43828.t1 AT5G58620 46.898 693 271 17 23 706 2 606 0.0 570
MS.gene43828.t1 AT2G40140 42.857 714 281 18 1 706 1 595 1.39e-174 512
MS.gene43828.t1 AT2G40140 42.857 714 281 18 1 706 1 595 1.39e-174 512
MS.gene43828.t1 AT2G41900 39.756 737 301 23 35 702 48 710 2.03e-142 434
MS.gene43828.t1 AT3G55980 49.789 474 195 13 1 462 1 443 6.53e-142 428
MS.gene43828.t1 AT3G55980 32.975 279 126 11 446 706 344 579 3.21e-21 98.6
MS.gene43828.t1 AT3G55980 49.789 474 195 13 1 462 68 510 3.23e-141 428
MS.gene43828.t1 AT3G55980 38.071 197 82 8 514 706 486 646 9.30e-21 97.4
MS.gene43828.t1 AT5G12850 38.701 739 318 26 30 702 37 706 5.59e-139 424
MS.gene43828.t1 AT4G29190 52.273 176 83 1 212 387 62 236 1.70e-54 191
MS.gene43828.t1 AT2G25900 66.964 112 37 0 226 337 86 197 4.21e-53 186
MS.gene43828.t1 AT2G25900 66.964 112 37 0 226 337 86 197 4.21e-53 186
MS.gene43828.t1 AT2G19810 63.333 120 44 0 215 334 63 182 8.87e-53 186
MS.gene43828.t1 AT5G07500 52.703 148 66 1 189 332 7 154 1.51e-49 174
MS.gene43828.t1 AT1G03790 51.634 153 66 3 197 345 53 201 2.78e-47 172
MS.gene43828.t1 AT5G44260 55.970 134 54 2 210 342 44 173 3.32e-45 166

Find 188 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTCTTCAACCTGCTTT+TGG 0.190182 5.2:-59850191 None:intergenic
TCAGACATGTCTTCTGTTTC+CGG 0.194365 5.2:+59849511 MS.gene43828:CDS
GATGTATCGGCTTATATTCT+TGG 0.209122 5.2:+59849239 MS.gene43828:CDS
CTGAGGAAATCATCTTCTTT+TGG 0.219994 5.2:+59850829 MS.gene43828:CDS
CTCTTCATTGTGCGGTTGTT+GGG 0.225881 5.2:+59849312 MS.gene43828:CDS
AAAGTTGGTTCGAACAAATT+AGG 0.237750 5.2:+59849167 MS.gene43828:CDS
GGGCTCACCCGATGGAAATT+TGG 0.238746 5.2:+59850774 MS.gene43828:CDS
CTAGCTGCAGCTGGAGTTAA+AGG 0.264190 5.2:-59850871 None:intergenic
GAGGATGCTACAAGCTCTTT+TGG 0.287126 5.2:+59849469 MS.gene43828:CDS
ATACTACCGGGGAACTAAAT+AGG 0.291926 5.2:+59850377 MS.gene43828:CDS
TGATTGGATCGCCGACTTAT+AGG 0.298767 5.2:+59850602 MS.gene43828:CDS
CAAGGGCTTATTCTCATGAT+TGG 0.318225 5.2:+59849690 MS.gene43828:CDS
GTGTCCCTTGTCCTGAGTTT+CGG 0.340392 5.2:+59849783 MS.gene43828:CDS
GCTCTTCATTGTGCGGTTGT+TGG 0.359015 5.2:+59849311 MS.gene43828:CDS
GATTCATATTCGGACGCATT+TGG 0.363999 5.2:-59850534 None:intergenic
TGCAGATGCTGATTCATATT+CGG 0.365840 5.2:-59850544 None:intergenic
ACGCCGCCTTTGACTTCATC+TGG 0.368423 5.2:+59850094 MS.gene43828:CDS
GTCTTTCCTCTCCTTCCAAC+TGG 0.371979 5.2:+59850305 MS.gene43828:CDS
CAATGGAACAGATTCGATTC+CGG 0.374222 5.2:+59851020 MS.gene43828:CDS
TATATAGTACCGATGAGTTT+AGG 0.375544 5.2:+59849639 MS.gene43828:CDS
TCCTGTGCCCTAGCTGCAGC+TGG 0.377666 5.2:-59850880 None:intergenic
CATTCCACTTCCAGCGTGAT+TGG 0.381137 5.2:+59850586 MS.gene43828:CDS
CCTTGGATTGAAGATAGAAT+TGG 0.386827 5.2:-59849444 None:intergenic
CTGCAACAAAACTATTCTTC+AGG 0.389322 5.2:+59850562 MS.gene43828:CDS
CGCCCCTTGTATGCTTCTAC+CGG 0.390009 5.2:+59849959 MS.gene43828:CDS
GATGGGGTTGGTTTGTGGTA+TGG 0.391400 5.2:+59849140 MS.gene43828:CDS
AGCAAAATCTTGATAATCTC+GGG 0.396619 5.2:-59849350 None:intergenic
AAAATTTCTTCAAGGTTTGT+AGG 0.404437 5.2:-59850415 None:intergenic
ATTCAGATATTGCAATGCTT+AGG 0.408619 5.2:+59850233 MS.gene43828:CDS
CTTGATGCTGCAGGAGCAGC+AGG 0.412363 5.2:+59850484 MS.gene43828:CDS
TGGAATTTATGCAACATTGA+TGG 0.416189 5.2:-59850451 None:intergenic
GAGACCCGAAAATTTCTTCA+AGG 0.416968 5.2:-59850423 None:intergenic
TTCAGATATTGCAATGCTTA+GGG 0.419562 5.2:+59850234 MS.gene43828:CDS
TCGGCTTATATTCTTGGAAC+AGG 0.420142 5.2:+59849245 MS.gene43828:CDS
TTGTCAAAAGGATTTGATCA+TGG 0.420181 5.2:+59848992 MS.gene43828:CDS
AGAATTTCTCTTGATGCTGC+AGG 0.423695 5.2:+59850475 MS.gene43828:CDS
TATATCCCATTCTTAATGTC+TGG 0.426530 5.2:-59849620 None:intergenic
CTCATGGTTGCAGCTATGTA+TGG 0.426552 5.2:+59849209 MS.gene43828:CDS
GCTTGTAGCATCCTCTTCCT+TGG 0.429452 5.2:-59849461 None:intergenic
CCACATGGCTGCAGCAGCAA+TGG 0.430817 5.2:-59850128 None:intergenic
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 5.2:+59849672 MS.gene43828:CDS
TAGTTCCCCGGTAGTATGAT+TGG 0.431664 5.2:-59850371 None:intergenic
AAGCAAAATCTTGATAATCT+CGG 0.433411 5.2:-59849351 None:intergenic
CTTATATTCTTGGAACAGGT+CGG 0.443594 5.2:+59849249 MS.gene43828:CDS
ATGTTGATGGGGTTGGTTTG+TGG 0.450945 5.2:+59849135 MS.gene43828:CDS
CACATGGCTGCAGCAGCAAT+GGG 0.454215 5.2:-59850127 None:intergenic
GAGTGTCCCTTTGTTCATCC+AGG 0.455762 5.2:+59849716 MS.gene43828:CDS
GGTTGCGATGTTGATGGGGT+TGG 0.455769 5.2:+59849128 MS.gene43828:CDS
CTTATAGGTTTGATCCATCC+AGG 0.456499 5.2:+59850617 MS.gene43828:CDS
GCAGTACTGTAATATGATCT+AGG 0.457857 5.2:-59849998 None:intergenic
CACCCGATGGAAATTTGGAT+TGG 0.458700 5.2:+59850779 MS.gene43828:CDS
AGCGAAACAATCAAATCAAC+TGG 0.459199 5.2:-59849419 None:intergenic
AATCTGTTCCATTGTTAAGA+TGG 0.459769 5.2:-59851011 None:intergenic
AGTTGATTTGATTGTTTCGC+TGG 0.460352 5.2:+59849421 MS.gene43828:CDS
CAGCTATAATGATATTTCCT+TGG 0.464131 5.2:-59849761 None:intergenic
CGATCCAATCACGCTGGAAG+TGG 0.465663 5.2:-59850590 None:intergenic
TGTCAAAAGGATTTGATCAT+GGG 0.468107 5.2:+59848993 MS.gene43828:CDS
GTCAAAGAACCCGGAAAAGA+TGG 0.468932 5.2:-59850349 None:intergenic
CTTCTTTGCTCACAAGGTCG+AGG 0.469734 5.2:+59849931 MS.gene43828:CDS
ACGAGGGTTGCGATGTTGAT+GGG 0.471244 5.2:+59849123 MS.gene43828:CDS
TCTCTTCCAGACATTAAGAA+TGG 0.478120 5.2:+59849614 MS.gene43828:CDS
CTTTAACTCCAGCTGCAGCT+AGG 0.479692 5.2:+59850872 MS.gene43828:CDS
GGAGCAATTGTACATGGATC+AGG 0.480663 5.2:+59851050 MS.gene43828:CDS
CTCTTCCAGACATTAAGAAT+GGG 0.482849 5.2:+59849615 MS.gene43828:CDS
TACTGCTTCTACATTAGAGA+TGG 0.486960 5.2:+59850015 MS.gene43828:CDS
TATGTGAATGGGAATAAAGA+AGG 0.487426 5.2:+59849023 MS.gene43828:CDS
CGGAAAGGATCGTGCAGTAA+AGG 0.487429 5.2:+59849803 MS.gene43828:CDS
CACTTCAGCTTCCCAAAAGC+AGG 0.487868 5.2:+59850179 MS.gene43828:CDS
AGATTCGATTCCGGCTTGGT+TGG 0.488203 5.2:+59851029 MS.gene43828:CDS
AGCTGGAGTTAAAGGAGTAC+TGG 0.489995 5.2:-59850863 None:intergenic
TTATATTCTTGGAACAGGTC+GGG 0.491005 5.2:+59849250 MS.gene43828:CDS
TCTTCATTGTGCGGTTGTTG+GGG 0.492583 5.2:+59849313 MS.gene43828:CDS
TTGTGGTATGGAAGGAAAGT+TGG 0.493676 5.2:+59849152 MS.gene43828:CDS
ATGGGGTGTGAGTATGTGAA+TGG 0.494445 5.2:+59849011 MS.gene43828:CDS
CAGGTCGGGTTGATGTTAAT+CGG 0.495738 5.2:+59849264 MS.gene43828:CDS
GTATGGAAGCTTGGATGTAT+CGG 0.499389 5.2:+59849226 MS.gene43828:CDS
TCTGGAAGAGAGACATCAAC+AGG 0.501027 5.2:-59849602 None:intergenic
TTTAACTCCAGCTGCAGCTA+GGG 0.502176 5.2:+59850873 MS.gene43828:CDS
AGGAGATGGAATAGCAGAAC+CGG 0.503649 5.2:-59849978 None:intergenic
ATGGAGAACCAAGTGACATT+GGG 0.506623 5.2:-59850048 None:intergenic
GGACGCATTTGGATTCCAGT+TGG 0.507506 5.2:-59850523 None:intergenic
CCCGGAAAAGATGGACTGTT+AGG 0.507891 5.2:-59850340 None:intergenic
CTATGAACCAGATGTGTCTT+GGG 0.508226 5.2:+59850909 MS.gene43828:CDS
TCTTTGACCAATCATACTAC+CGG 0.508255 5.2:+59850364 MS.gene43828:CDS
TCCAGCTGCAGCTAGGGCAC+AGG 0.510410 5.2:+59850879 MS.gene43828:CDS
CCCAAAAGCAGGTTGAAGAC+TGG 0.511273 5.2:+59850190 MS.gene43828:CDS
ACACGGCTTTGCAAGGATGA+AGG 0.512844 5.2:+59849887 MS.gene43828:CDS
TGCAGCTATGTATGGAAGCT+TGG 0.514902 5.2:+59849217 MS.gene43828:CDS
GAATTAACCCAAGACACATC+TGG 0.517792 5.2:-59850916 None:intergenic
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 5.2:+59849673 MS.gene43828:CDS
ATGCAAGGCGACGCGATCCA+AGG 0.519136 5.2:+59849744 MS.gene43828:CDS
TCTCAGCTACAATCTCCAAC+TGG 0.520042 5.2:+59850508 MS.gene43828:CDS
TTAGCGTTGAAGATCAGAAA+AGG 0.521469 5.2:+59850977 MS.gene43828:CDS
CACCGCGCTCGATAAAGCTC+TGG 0.521693 5.2:-59850693 None:intergenic
CGAAAACCTATTTAGTTCCC+CGG 0.522116 5.2:-59850383 None:intergenic
GATGGAGAACCAAGTGACAT+TGG 0.523747 5.2:-59850049 None:intergenic
AACGAGGGTTGCGATGTTGA+TGG 0.524302 5.2:+59849122 MS.gene43828:CDS
GAACAGATTCGATTCCGGCT+TGG 0.527010 5.2:+59851025 MS.gene43828:CDS
TCAATTAGCCCAATGTCACT+TGG 0.534086 5.2:+59850040 MS.gene43828:CDS
TTGGGTTAATTCACTTGTGA+AGG 0.538508 5.2:+59850927 MS.gene43828:CDS
GTCCAATCCAAATTTCCATC+GGG 0.538779 5.2:-59850781 None:intergenic
TTGGTTGGAGCAATTGTACA+TGG 0.540592 5.2:+59851044 MS.gene43828:CDS
CCATTGCTGCTGCAGCCATG+TGG 0.541307 5.2:+59850128 MS.gene43828:CDS
ACTATGAACCAGATGTGTCT+TGG 0.542920 5.2:+59850908 MS.gene43828:CDS
ACTGCTTCTACATTAGAGAT+GGG 0.544371 5.2:+59850016 MS.gene43828:CDS
TACAATTGCTCCAACCAAGC+CGG 0.546247 5.2:-59851039 None:intergenic
GTCAAAGGCGGCGTTGAGGA+GGG 0.547086 5.2:-59850085 None:intergenic
CTATCTTCAATCCAAGGAAG+AGG 0.548194 5.2:+59849450 MS.gene43828:CDS
AGTTTGCTTCTTTGCTCACA+AGG 0.549883 5.2:+59849925 MS.gene43828:CDS
CACGATCCTTTCCGAAACTC+AGG 0.550059 5.2:-59849794 None:intergenic
GCGAAAGCAGCAACTACTGA+TGG 0.552696 5.2:+59850270 MS.gene43828:CDS
CTTTGACCAATCATACTACC+GGG 0.556639 5.2:+59850365 MS.gene43828:CDS
CCAATTCTATCTTCAATCCA+AGG 0.560551 5.2:+59849444 MS.gene43828:CDS
TCTAACTGGGGCTCACCCGA+TGG 0.560712 5.2:+59850766 MS.gene43828:CDS
AGCCGTGTCTTATACTGCGC+AGG 0.561388 5.2:-59849872 None:intergenic
CTGTAATATGATCTAGGAGA+TGG 0.561399 5.2:-59849992 None:intergenic
AGTCAAAGGCGGCGTTGAGG+AGG 0.561805 5.2:-59850086 None:intergenic
TCAATGTCATCAATTGTCTC+CGG 0.563566 5.2:-59849530 None:intergenic
TTCATCCAGGGGAAAATGCA+AGG 0.563820 5.2:+59849729 MS.gene43828:CDS
AGAACCGGTAGAAGCATACA+AGG 0.565045 5.2:-59849963 None:intergenic
CTACTGATGGATGAGATGTC+CGG 0.565792 5.2:+59850283 MS.gene43828:CDS
GGGTTGGTTTGTGGTATGGA+AGG 0.567780 5.2:+59849144 MS.gene43828:CDS
GTTGATGTTAATCGGTCTAG+TGG 0.567818 5.2:+59849272 MS.gene43828:CDS
AGCCGACGCGGATAACTCCC+TGG 0.572603 5.2:-59850635 None:intergenic
TCAGCTGCAGATGATGTGGT+TGG 0.573637 5.2:+59849080 MS.gene43828:CDS
GAGGGTGGTATCAAAACAGA+TGG 0.574942 5.2:-59850067 None:intergenic
TGAAGAGAGGACACCTCTCA+TGG 0.576333 5.2:+59849193 MS.gene43828:CDS
ACAAATTAGGTTATGAAGAG+AGG 0.576520 5.2:+59849180 MS.gene43828:CDS
AGTGTCCCTTTGTTCATCCA+GGG 0.576667 5.2:+59849717 MS.gene43828:CDS
GACGCGGATAACTCCCTGGA+TGG 0.578369 5.2:-59850631 None:intergenic
ATGGAATGATTCCAGTTGGA+AGG 0.579291 5.2:-59850316 None:intergenic
CAATCACGCTGGAAGTGGAA+TGG 0.579963 5.2:-59850585 None:intergenic
CCTTTCCGAAACTCAGGACA+AGG 0.580350 5.2:-59849788 None:intergenic
GTATAAGACACGGCTTTGCA+AGG 0.581068 5.2:+59849880 MS.gene43828:CDS
GTTGGAAGGAGAGGAAAGAC+CGG 0.583195 5.2:-59850302 None:intergenic
ATGATTCCAGTTGGAAGGAG+AGG 0.583775 5.2:-59850311 None:intergenic
AGTCCAATCCAAATTTCCAT+CGG 0.586204 5.2:-59850782 None:intergenic
ATGAAGAGCAGTAGCACCAT+CGG 0.586647 5.2:-59849297 None:intergenic
ATGTGAATGGGAATAAAGAA+GGG 0.588204 5.2:+59849024 MS.gene43828:CDS
ATCTGAATTAACATCTCTTG+CGG 0.589707 5.2:-59850218 None:intergenic
CCTTGTCCTGAGTTTCGGAA+AGG 0.590059 5.2:+59849788 MS.gene43828:CDS
AGGCATGGAATGATTCCAGT+TGG 0.590112 5.2:-59850320 None:intergenic
ATCAACTGGTCGGTTACCGT+TGG 0.595630 5.2:-59849405 None:intergenic
TGGGGTGTGAGTATGTGAAT+GGG 0.600624 5.2:+59849012 MS.gene43828:CDS
ATGACATTGACGAATATCAA+AGG 0.602422 5.2:+59849543 MS.gene43828:CDS
AATTTGGATTGGACTTCACA+CGG 0.603583 5.2:+59850790 MS.gene43828:CDS
TGCTACTGCTCTTCATTGTG+CGG 0.605703 5.2:+59849304 MS.gene43828:CDS
GAGAATGAAGCTCAGAATGA+CGG 0.613447 5.2:-59850723 None:intergenic
AAAAGATGGACTGTTAGGCA+TGG 0.613610 5.2:-59850335 None:intergenic
TGGATGAACAAAGGGACACT+CGG 0.617153 5.2:-59849714 None:intergenic
AATCGGTCTAGTGGATCCGA+TGG 0.617627 5.2:+59849281 MS.gene43828:CDS
CTGCAGCGCCATCTTAACAA+TGG 0.619796 5.2:+59851003 MS.gene43828:CDS
TGTATACATCCTAAACTCAT+CGG 0.621538 5.2:-59849648 None:intergenic
GTATGATTGGTCAAAGAACC+CGG 0.622363 5.2:-59850358 None:intergenic
TACATAGCTGCAACCATGAG+AGG 0.624576 5.2:-59849206 None:intergenic
GCAAAATCTTGATAATCTCG+GGG 0.625212 5.2:-59849349 None:intergenic
CAGCATCAAGAGAAATTCTG+TGG 0.626015 5.2:-59850471 None:intergenic
ATCCAGGGAGTTATCCGCGT+CGG 0.626258 5.2:+59850633 MS.gene43828:CDS
TGAGAATAAGCCCTTGAACA+AGG 0.627841 5.2:-59849683 None:intergenic
GTCAAAAGGATTTGATCATG+GGG 0.630254 5.2:+59848994 MS.gene43828:CDS
TTATAGGTTTGATCCATCCA+GGG 0.631529 5.2:+59850618 MS.gene43828:CDS
GATGGATCAAACCTATAAGT+CGG 0.632076 5.2:-59850613 None:intergenic
GTGTCCCTTTGTTCATCCAG+GGG 0.633464 5.2:+59849718 MS.gene43828:CDS
CGAGGGTTGCGATGTTGATG+GGG 0.634282 5.2:+59849124 MS.gene43828:CDS
CTTCATTGTGCGGTTGTTGG+GGG 0.635961 5.2:+59849314 MS.gene43828:CDS
AAACAATCAAATCAACTGGT+CGG 0.641933 5.2:-59849415 None:intergenic
CTAAACTGATGAGATTCTTG+CGG 0.645883 5.2:-59850958 None:intergenic
GACGCTCCAGATGAAGTCAA+AGG 0.647006 5.2:-59850100 None:intergenic
AAAGGCGGCGTTGAGGAGGG+TGG 0.647882 5.2:-59850082 None:intergenic
GCTAGTGCTGTTGATGCCAA+CGG 0.653244 5.2:+59849389 MS.gene43828:CDS
ATTAGACGGTGTCTGCCACA+TGG 0.653248 5.2:-59850143 None:intergenic
TAAAGAAGGGCAGTATCATG+AGG 0.655064 5.2:+59849037 MS.gene43828:CDS
TGGAGTTAAAGGAGTACTGG+TGG 0.655843 5.2:-59850860 None:intergenic
TGAAGTCAAAGGCGGCGTTG+AGG 0.657176 5.2:-59850089 None:intergenic
AGCCAGAGCTTTATCGAGCG+CGG 0.658939 5.2:+59850691 MS.gene43828:CDS
AGTCGGCGATCCAATCACGC+TGG 0.662021 5.2:-59850596 None:intergenic
GAGAAGAACTGAATAAGCTG+AGG 0.666361 5.2:+59850812 MS.gene43828:CDS
TGCTTAGGGTTGAAACTCAG+CGG 0.673294 5.2:+59850248 MS.gene43828:CDS
AACCGGTAGAAGCATACAAG+GGG 0.673738 5.2:-59849961 None:intergenic
GAACCGGTAGAAGCATACAA+GGG 0.683674 5.2:-59849962 None:intergenic
ATCCTGCGCAGTATAAGACA+CGG 0.689588 5.2:+59849870 MS.gene43828:CDS
CAAAATCTTGATAATCTCGG+GGG 0.705772 5.2:-59849348 None:intergenic
TCTTGCATTCAAAGCCGACG+CGG 0.707580 5.2:-59850647 None:intergenic
TTTGACCAATCATACTACCG+GGG 0.715395 5.2:+59850366 MS.gene43828:CDS
GATTCTTGTGACTATGCACA+CGG 0.716065 5.2:+59849827 MS.gene43828:CDS
CTTTCCGAAACTCAGGACAA+GGG 0.724035 5.2:-59849787 None:intergenic
GTAGGGATCGAAACATTAGA+CGG 0.728881 5.2:-59850157 None:intergenic
GCTCCAGATGAAGTCAAAGG+CGG 0.730706 5.2:-59850097 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAAAACTTGTCAAA+AGG + chr5.2:59848980-59848999 MS.gene43828:CDS 20.0%
! AAAATTTCTTCAAGGTTTGT+AGG - chr5.2:59850418-59850437 None:intergenic 25.0%
!! AAGCAAAATCTTGATAATCT+CGG - chr5.2:59849354-59849373 None:intergenic 25.0%
!! ACAAACCTTGAAGAAATTTT+CGG + chr5.2:59850418-59850437 MS.gene43828:CDS 25.0%
AAAAAATGCGATTGAAAACG+AGG + chr5.2:59849106-59849125 MS.gene43828:CDS 30.0%
AAAAATGCGATTGAAAACGA+GGG + chr5.2:59849107-59849126 MS.gene43828:CDS 30.0%
AAACAATCAAATCAACTGGT+CGG - chr5.2:59849418-59849437 None:intergenic 30.0%
AATCTGTTCCATTGTTAAGA+TGG - chr5.2:59851014-59851033 None:intergenic 30.0%
ACAAATTAGGTTATGAAGAG+AGG + chr5.2:59849180-59849199 MS.gene43828:CDS 30.0%
ATCTGAATTAACATCTCTTG+CGG - chr5.2:59850221-59850240 None:intergenic 30.0%
ATGACATTGACGAATATCAA+AGG + chr5.2:59849543-59849562 MS.gene43828:CDS 30.0%
ATGTGAATGGGAATAAAGAA+GGG + chr5.2:59849024-59849043 MS.gene43828:CDS 30.0%
ATTCAGATATTGCAATGCTT+AGG + chr5.2:59850233-59850252 MS.gene43828:CDS 30.0%
CAGCTATAATGATATTTCCT+TGG - chr5.2:59849764-59849783 None:intergenic 30.0%
TATATCCCATTCTTAATGTC+TGG - chr5.2:59849623-59849642 None:intergenic 30.0%
TATGTGAATGGGAATAAAGA+AGG + chr5.2:59849023-59849042 MS.gene43828:CDS 30.0%
TGGAATTTATGCAACATTGA+TGG - chr5.2:59850454-59850473 None:intergenic 30.0%
TGTATACATCCTAAACTCAT+CGG - chr5.2:59849651-59849670 None:intergenic 30.0%
TGTCAAAAGGATTTGATCAT+GGG + chr5.2:59848993-59849012 MS.gene43828:CDS 30.0%
TTCAGATATTGCAATGCTTA+GGG + chr5.2:59850234-59850253 MS.gene43828:CDS 30.0%
TTGTCAAAAGGATTTGATCA+TGG + chr5.2:59848992-59849011 MS.gene43828:CDS 30.0%
! AGCAAAATCTTGATAATCTC+GGG - chr5.2:59849353-59849372 None:intergenic 30.0%
! CAAACCTTGAAGAAATTTTC+GGG + chr5.2:59850419-59850438 MS.gene43828:CDS 30.0%
!! AAAGTTGGTTCGAACAAATT+AGG + chr5.2:59849167-59849186 MS.gene43828:CDS 30.0%
!! TATATAGTACCGATGAGTTT+AGG + chr5.2:59849639-59849658 MS.gene43828:CDS 30.0%
ACTGCTTCTACATTAGAGAT+GGG + chr5.2:59850016-59850035 MS.gene43828:CDS 35.0%
AGCGAAACAATCAAATCAAC+TGG - chr5.2:59849422-59849441 None:intergenic 35.0%
AGTCCAATCCAAATTTCCAT+CGG - chr5.2:59850785-59850804 None:intergenic 35.0%
CCAATTCTATCTTCAATCCA+AGG + chr5.2:59849444-59849463 MS.gene43828:CDS 35.0%
CCTTGGATTGAAGATAGAAT+TGG - chr5.2:59849447-59849466 None:intergenic 35.0%
CTAAACTGATGAGATTCTTG+CGG - chr5.2:59850961-59850980 None:intergenic 35.0%
CTCTTCCAGACATTAAGAAT+GGG + chr5.2:59849615-59849634 MS.gene43828:CDS 35.0%
CTGCAACAAAACTATTCTTC+AGG + chr5.2:59850562-59850581 MS.gene43828:CDS 35.0%
CTGTAATATGATCTAGGAGA+TGG - chr5.2:59849995-59850014 None:intergenic 35.0%
CTTATATTCTTGGAACAGGT+CGG + chr5.2:59849249-59849268 MS.gene43828:CDS 35.0%
GATGGATCAAACCTATAAGT+CGG - chr5.2:59850616-59850635 None:intergenic 35.0%
GCAGTACTGTAATATGATCT+AGG - chr5.2:59850001-59850020 None:intergenic 35.0%
GTCAAAAGGATTTGATCATG+GGG + chr5.2:59848994-59849013 MS.gene43828:CDS 35.0%
TACTGCTTCTACATTAGAGA+TGG + chr5.2:59850015-59850034 MS.gene43828:CDS 35.0%
TCAATGTCATCAATTGTCTC+CGG - chr5.2:59849533-59849552 None:intergenic 35.0%
TCTCTTCCAGACATTAAGAA+TGG + chr5.2:59849614-59849633 MS.gene43828:CDS 35.0%
TCTTTGACCAATCATACTAC+CGG + chr5.2:59850364-59850383 MS.gene43828:CDS 35.0%
TTATAGGTTTGATCCATCCA+GGG + chr5.2:59850618-59850637 MS.gene43828:CDS 35.0%
TTATATTCTTGGAACAGGTC+GGG + chr5.2:59849250-59849269 MS.gene43828:CDS 35.0%
TTGGGTTAATTCACTTGTGA+AGG + chr5.2:59850927-59850946 MS.gene43828:CDS 35.0%
! AATTTGGATTGGACTTCACA+CGG + chr5.2:59850790-59850809 MS.gene43828:CDS 35.0%
! CAAAATCTTGATAATCTCGG+GGG - chr5.2:59849351-59849370 None:intergenic 35.0%
! CAAGATTTTGCTTGATGCAT+CGG + chr5.2:59849361-59849380 MS.gene43828:CDS 35.0%
! CTGAGGAAATCATCTTCTTT+TGG + chr5.2:59850829-59850848 MS.gene43828:CDS 35.0%
! GCAAAATCTTGATAATCTCG+GGG - chr5.2:59849352-59849371 None:intergenic 35.0%
! TTAGCGTTGAAGATCAGAAA+AGG + chr5.2:59850977-59850996 MS.gene43828:CDS 35.0%
!! AGTTGATTTGATTGTTTCGC+TGG + chr5.2:59849421-59849440 MS.gene43828:CDS 35.0%
!! GATGTATCGGCTTATATTCT+TGG + chr5.2:59849239-59849258 MS.gene43828:CDS 35.0%
!! TGCAGATGCTGATTCATATT+CGG - chr5.2:59850547-59850566 None:intergenic 35.0%
!!! AGCCTTATGCTTTTTCTAAC+TGG + chr5.2:59850752-59850771 MS.gene43828:CDS 35.0%
!!! CCTTATGCTTTTTCTAACTG+GGG + chr5.2:59850754-59850773 MS.gene43828:CDS 35.0%
!!! GCCTTATGCTTTTTCTAACT+GGG + chr5.2:59850753-59850772 MS.gene43828:CDS 35.0%
!!! GGATAATCTTTTGAAACACG+AGG - chr5.2:59849584-59849603 None:intergenic 35.0%
ACTATGAACCAGATGTGTCT+TGG + chr5.2:59850908-59850927 MS.gene43828:CDS 40.0%
AGAATTTCTCTTGATGCTGC+AGG + chr5.2:59850475-59850494 MS.gene43828:CDS 40.0%
ATACTACCGGGGAACTAAAT+AGG + chr5.2:59850377-59850396 MS.gene43828:CDS 40.0%
ATGGAATGATTCCAGTTGGA+AGG - chr5.2:59850319-59850338 None:intergenic 40.0%
ATGGAGAACCAAGTGACATT+GGG - chr5.2:59850051-59850070 None:intergenic 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr5.2:59849690-59849709 MS.gene43828:CDS 40.0%
CAATGGAACAGATTCGATTC+CGG + chr5.2:59851020-59851039 MS.gene43828:CDS 40.0%
CAGCATCAAGAGAAATTCTG+TGG - chr5.2:59850474-59850493 None:intergenic 40.0%
CTATCTTCAATCCAAGGAAG+AGG + chr5.2:59849450-59849469 MS.gene43828:CDS 40.0%
CTATGAACCAGATGTGTCTT+GGG + chr5.2:59850909-59850928 MS.gene43828:CDS 40.0%
CTTATAGGTTTGATCCATCC+AGG + chr5.2:59850617-59850636 MS.gene43828:CDS 40.0%
CTTTGACCAATCATACTACC+GGG + chr5.2:59850365-59850384 MS.gene43828:CDS 40.0%
GAATTAACCCAAGACACATC+TGG - chr5.2:59850919-59850938 None:intergenic 40.0%
GAGAAGAACTGAATAAGCTG+AGG + chr5.2:59850812-59850831 MS.gene43828:CDS 40.0%
GAGAATGAAGCTCAGAATGA+CGG - chr5.2:59850726-59850745 None:intergenic 40.0%
GAGACCCGAAAATTTCTTCA+AGG - chr5.2:59850426-59850445 None:intergenic 40.0%
GATTCATATTCGGACGCATT+TGG - chr5.2:59850537-59850556 None:intergenic 40.0%
GATTCTTGTGACTATGCACA+CGG + chr5.2:59849827-59849846 MS.gene43828:CDS 40.0%
GTAGGGATCGAAACATTAGA+CGG - chr5.2:59850160-59850179 None:intergenic 40.0%
GTATGGAAGCTTGGATGTAT+CGG + chr5.2:59849226-59849245 MS.gene43828:CDS 40.0%
GTCCAATCCAAATTTCCATC+GGG - chr5.2:59850784-59850803 None:intergenic 40.0%
GTTGATGTTAATCGGTCTAG+TGG + chr5.2:59849272-59849291 MS.gene43828:CDS 40.0%
TAAAGAAGGGCAGTATCATG+AGG + chr5.2:59849037-59849056 MS.gene43828:CDS 40.0%
TCAATTAGCCCAATGTCACT+TGG + chr5.2:59850040-59850059 MS.gene43828:CDS 40.0%
TCAGACATGTCTTCTGTTTC+CGG + chr5.2:59849511-59849530 MS.gene43828:CDS 40.0%
TCGGCTTATATTCTTGGAAC+AGG + chr5.2:59849245-59849264 MS.gene43828:CDS 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr5.2:59849686-59849705 None:intergenic 40.0%
TTGGTTGGAGCAATTGTACA+TGG + chr5.2:59851044-59851063 MS.gene43828:CDS 40.0%
TTGTGGTATGGAAGGAAAGT+TGG + chr5.2:59849152-59849171 MS.gene43828:CDS 40.0%
TTTGACCAATCATACTACCG+GGG + chr5.2:59850366-59850385 MS.gene43828:CDS 40.0%
! AGTTTGCTTCTTTGCTCACA+AGG + chr5.2:59849925-59849944 MS.gene43828:CDS 40.0%
! ATGCTACAAGCTCTTTTGGA+TGG + chr5.2:59849473-59849492 MS.gene43828:CDS 40.0%
! ATTTTCAGCTGCAGATGATG+TGG + chr5.2:59849076-59849095 MS.gene43828:CDS 40.0%
! ATTTTCCCCTGGATGAACAA+AGG - chr5.2:59849726-59849745 None:intergenic 40.0%
! CCCCAGTTAGAAAAAGCATA+AGG - chr5.2:59850757-59850776 None:intergenic 40.0%
! CGAAAACCTATTTAGTTCCC+CGG - chr5.2:59850386-59850405 None:intergenic 40.0%
! CGGGGAACTAAATAGGTTTT+CGG + chr5.2:59850384-59850403 MS.gene43828:CDS 40.0%
! GAAAAAGCATAAGGCTTAGC+AGG - chr5.2:59850748-59850767 None:intergenic 40.0%
! GAGCTGCTGCATTTTCAAAA+CGG + chr5.2:59850668-59850687 MS.gene43828:CDS 40.0%
! GGAACTAAATAGGTTTTCGG+GGG + chr5.2:59850387-59850406 MS.gene43828:CDS 40.0%
! GGGAACTAAATAGGTTTTCG+GGG + chr5.2:59850386-59850405 MS.gene43828:CDS 40.0%
! GGGGAACTAAATAGGTTTTC+GGG + chr5.2:59850385-59850404 MS.gene43828:CDS 40.0%
! GTATGATTGGTCAAAGAACC+CGG - chr5.2:59850361-59850380 None:intergenic 40.0%
! TTTTCCCCTGGATGAACAAA+GGG - chr5.2:59849725-59849744 None:intergenic 40.0%
!! AAAAGATGGACTGTTAGGCA+TGG - chr5.2:59850338-59850357 None:intergenic 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr5.2:59849673-59849692 MS.gene43828:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr5.2:59849672-59849691 MS.gene43828:CDS 40.0%
!! TTTTGGGAAGCTGAAGTGTA+GGG - chr5.2:59850177-59850196 None:intergenic 40.0%
AGGAGATGGAATAGCAGAAC+CGG - chr5.2:59849981-59850000 None:intergenic 45.0%
AGGCATGGAATGATTCCAGT+TGG - chr5.2:59850323-59850342 None:intergenic 45.0%
AGTGTCCCTTTGTTCATCCA+GGG + chr5.2:59849717-59849736 MS.gene43828:CDS 45.0%
ATCCTGCGCAGTATAAGACA+CGG + chr5.2:59849870-59849889 MS.gene43828:CDS 45.0%
ATGAAGAGCAGTAGCACCAT+CGG - chr5.2:59849300-59849319 None:intergenic 45.0%
ATGATTCCAGTTGGAAGGAG+AGG - chr5.2:59850314-59850333 None:intergenic 45.0%
ATGGGGTGTGAGTATGTGAA+TGG + chr5.2:59849011-59849030 MS.gene43828:CDS 45.0%
CACCCGATGGAAATTTGGAT+TGG + chr5.2:59850779-59850798 MS.gene43828:CDS 45.0%
CTCATGGTTGCAGCTATGTA+TGG + chr5.2:59849209-59849228 MS.gene43828:CDS 45.0%
CTCTTCATTGTGCGGTTGTT+GGG + chr5.2:59849312-59849331 MS.gene43828:CDS 45.0%
CTTTCCGAAACTCAGGACAA+GGG - chr5.2:59849790-59849809 None:intergenic 45.0%
GAGGGTGGTATCAAAACAGA+TGG - chr5.2:59850070-59850089 None:intergenic 45.0%
GATGGAGAACCAAGTGACAT+TGG - chr5.2:59850052-59850071 None:intergenic 45.0%
GGAGCAATTGTACATGGATC+AGG + chr5.2:59851050-59851069 MS.gene43828:CDS 45.0%
GTATAAGACACGGCTTTGCA+AGG + chr5.2:59849880-59849899 MS.gene43828:CDS 45.0%
GTCAAAGAACCCGGAAAAGA+TGG - chr5.2:59850352-59850371 None:intergenic 45.0%
TACAATTGCTCCAACCAAGC+CGG - chr5.2:59851042-59851061 None:intergenic 45.0%
TACATAGCTGCAACCATGAG+AGG - chr5.2:59849209-59849228 None:intergenic 45.0%
TAGTTCCCCGGTAGTATGAT+TGG - chr5.2:59850374-59850393 None:intergenic 45.0%
TCTCAGCTACAATCTCCAAC+TGG + chr5.2:59850508-59850527 MS.gene43828:CDS 45.0%
TCTGGAAGAGAGACATCAAC+AGG - chr5.2:59849605-59849624 None:intergenic 45.0%
TCTTCATTGTGCGGTTGTTG+GGG + chr5.2:59849313-59849332 MS.gene43828:CDS 45.0%
TGCAGCTATGTATGGAAGCT+TGG + chr5.2:59849217-59849236 MS.gene43828:CDS 45.0%
TGCTACTGCTCTTCATTGTG+CGG + chr5.2:59849304-59849323 MS.gene43828:CDS 45.0%
TGCTTAGGGTTGAAACTCAG+CGG + chr5.2:59850248-59850267 MS.gene43828:CDS 45.0%
TGGATGAACAAAGGGACACT+CGG - chr5.2:59849717-59849736 None:intergenic 45.0%
TGGGGTGTGAGTATGTGAAT+GGG + chr5.2:59849012-59849031 MS.gene43828:CDS 45.0%
TTCATCCAGGGGAAAATGCA+AGG + chr5.2:59849729-59849748 MS.gene43828:CDS 45.0%
TTTAACTCCAGCTGCAGCTA+GGG + chr5.2:59850873-59850892 MS.gene43828:CDS 45.0%
! AACCGGTAGAAGCATACAAG+GGG - chr5.2:59849964-59849983 None:intergenic 45.0%
! AGAACCGGTAGAAGCATACA+AGG - chr5.2:59849966-59849985 None:intergenic 45.0%
! AGCTGGAGTTAAAGGAGTAC+TGG - chr5.2:59850866-59850885 None:intergenic 45.0%
! CCTAACAGTCCATCTTTTCC+GGG + chr5.2:59850340-59850359 MS.gene43828:CDS 45.0%
! CTACTGATGGATGAGATGTC+CGG + chr5.2:59850283-59850302 MS.gene43828:CDS 45.0%
! GAACCGGTAGAAGCATACAA+GGG - chr5.2:59849965-59849984 None:intergenic 45.0%
! GAGGATGCTACAAGCTCTTT+TGG + chr5.2:59849469-59849488 MS.gene43828:CDS 45.0%
! GATTTTGCTTGATGCATCGG+CGG + chr5.2:59849364-59849383 MS.gene43828:CDS 45.0%
! GCCTAACAGTCCATCTTTTC+CGG + chr5.2:59850339-59850358 MS.gene43828:CDS 45.0%
! GCTCTTTTGGATGGTACAGA+CGG + chr5.2:59849482-59849501 MS.gene43828:CDS 45.0%
! TCCAGTCTTCAACCTGCTTT+TGG - chr5.2:59850194-59850213 None:intergenic 45.0%
!! ATGTTGATGGGGTTGGTTTG+TGG + chr5.2:59849135-59849154 MS.gene43828:CDS 45.0%
!! CAGGTCGGGTTGATGTTAAT+CGG + chr5.2:59849264-59849283 MS.gene43828:CDS 45.0%
!! CCAGTCTTCAACCTGCTTTT+GGG - chr5.2:59850193-59850212 None:intergenic 45.0%
!! CTTTTGGGAAGCTGAAGTGT+AGG - chr5.2:59850178-59850197 None:intergenic 45.0%
!! TGATTGGATCGCCGACTTAT+AGG + chr5.2:59850602-59850621 MS.gene43828:CDS 45.0%
!! TGGAGTTAAAGGAGTACTGG+TGG - chr5.2:59850863-59850882 None:intergenic 45.0%
!!! CACACGGTATTTTTGAGTGC+TGG + chr5.2:59849843-59849862 MS.gene43828:CDS 45.0%
AACGAGGGTTGCGATGTTGA+TGG + chr5.2:59849122-59849141 MS.gene43828:CDS 50.0%
ACACGGCTTTGCAAGGATGA+AGG + chr5.2:59849887-59849906 MS.gene43828:CDS 50.0%
ACGAGGGTTGCGATGTTGAT+GGG + chr5.2:59849123-59849142 MS.gene43828:CDS 50.0%
ATCAACTGGTCGGTTACCGT+TGG - chr5.2:59849408-59849427 None:intergenic 50.0%
ATTAGACGGTGTCTGCCACA+TGG - chr5.2:59850146-59850165 None:intergenic 50.0%
CAATCACGCTGGAAGTGGAA+TGG - chr5.2:59850588-59850607 None:intergenic 50.0%
CACGATCCTTTCCGAAACTC+AGG - chr5.2:59849797-59849816 None:intergenic 50.0%
CACTTCAGCTTCCCAAAAGC+AGG + chr5.2:59850179-59850198 MS.gene43828:CDS 50.0%
CATTCCACTTCCAGCGTGAT+TGG + chr5.2:59850586-59850605 MS.gene43828:CDS 50.0%
CCTTGTCCTGAGTTTCGGAA+AGG + chr5.2:59849788-59849807 MS.gene43828:CDS 50.0%
CCTTTCCGAAACTCAGGACA+AGG - chr5.2:59849791-59849810 None:intergenic 50.0%
CGGAAAGGATCGTGCAGTAA+AGG + chr5.2:59849803-59849822 MS.gene43828:CDS 50.0%
CTAGCTGCAGCTGGAGTTAA+AGG - chr5.2:59850874-59850893 None:intergenic 50.0%
CTGCAGCGCCATCTTAACAA+TGG + chr5.2:59851003-59851022 MS.gene43828:CDS 50.0%
CTTCATTGTGCGGTTGTTGG+GGG + chr5.2:59849314-59849333 MS.gene43828:CDS 50.0%
CTTCTTTGCTCACAAGGTCG+AGG + chr5.2:59849931-59849950 MS.gene43828:CDS 50.0%
CTTTAACTCCAGCTGCAGCT+AGG + chr5.2:59850872-59850891 MS.gene43828:CDS 50.0%
GAACAGATTCGATTCCGGCT+TGG + chr5.2:59851025-59851044 MS.gene43828:CDS 50.0%
GACGCTCCAGATGAAGTCAA+AGG - chr5.2:59850103-59850122 None:intergenic 50.0%
GAGTGTCCCTTTGTTCATCC+AGG + chr5.2:59849716-59849735 MS.gene43828:CDS 50.0%
GCGAAAGCAGCAACTACTGA+TGG + chr5.2:59850270-59850289 MS.gene43828:CDS 50.0%
GCTCCAGATGAAGTCAAAGG+CGG - chr5.2:59850100-59850119 None:intergenic 50.0%
GCTCTTCATTGTGCGGTTGT+TGG + chr5.2:59849311-59849330 MS.gene43828:CDS 50.0%
GCTTGTAGCATCCTCTTCCT+TGG - chr5.2:59849464-59849483 None:intergenic 50.0%
GGACGCATTTGGATTCCAGT+TGG - chr5.2:59850526-59850545 None:intergenic 50.0%
GTCTTTCCTCTCCTTCCAAC+TGG + chr5.2:59850305-59850324 MS.gene43828:CDS 50.0%
GTGTCCCTTGTCCTGAGTTT+CGG + chr5.2:59849783-59849802 MS.gene43828:CDS 50.0%
GTGTCCCTTTGTTCATCCAG+GGG + chr5.2:59849718-59849737 MS.gene43828:CDS 50.0%
GTTGGAAGGAGAGGAAAGAC+CGG - chr5.2:59850305-59850324 None:intergenic 50.0%
TCAGCTGCAGATGATGTGGT+TGG + chr5.2:59849080-59849099 MS.gene43828:CDS 50.0%
TCTTGCATTCAAAGCCGACG+CGG - chr5.2:59850650-59850669 None:intergenic 50.0%
TGAAGAGAGGACACCTCTCA+TGG + chr5.2:59849193-59849212 MS.gene43828:CDS 50.0%
! AATCGGTCTAGTGGATCCGA+TGG + chr5.2:59849281-59849300 MS.gene43828:CDS 50.0%
! CCCAAAAGCAGGTTGAAGAC+TGG + chr5.2:59850190-59850209 MS.gene43828:CDS 50.0%
! CTTGATAATCTCGGGGGAAG+CGG - chr5.2:59849345-59849364 None:intergenic 50.0%
! GCTAGTGCTGTTGATGCCAA+CGG + chr5.2:59849389-59849408 MS.gene43828:CDS 50.0%
!! AGATTCGATTCCGGCTTGGT+TGG + chr5.2:59851029-59851048 MS.gene43828:CDS 50.0%
!! CCCGGAAAAGATGGACTGTT+AGG - chr5.2:59850343-59850362 None:intergenic 50.0%
!! GATGGGGTTGGTTTGTGGTA+TGG + chr5.2:59849140-59849159 MS.gene43828:CDS 50.0%
!! GGGTTGGTTTGTGGTATGGA+AGG + chr5.2:59849144-59849163 MS.gene43828:CDS 50.0%
AGCCGTGTCTTATACTGCGC+AGG - chr5.2:59849875-59849894 None:intergenic 55.0%
ATCCAGGGAGTTATCCGCGT+CGG + chr5.2:59850633-59850652 MS.gene43828:CDS 55.0%
CACATGGCTGCAGCAGCAAT+GGG - chr5.2:59850130-59850149 None:intergenic 55.0%
CGAGGGTTGCGATGTTGATG+GGG + chr5.2:59849124-59849143 MS.gene43828:CDS 55.0%
CGATCCAATCACGCTGGAAG+TGG - chr5.2:59850593-59850612 None:intergenic 55.0%
CGCCCCTTGTATGCTTCTAC+CGG + chr5.2:59849959-59849978 MS.gene43828:CDS 55.0%
GGGCTCACCCGATGGAAATT+TGG + chr5.2:59850774-59850793 MS.gene43828:CDS 55.0%
TGAAGTCAAAGGCGGCGTTG+AGG - chr5.2:59850092-59850111 None:intergenic 55.0%
! ACGCCGCCTTTGACTTCATC+TGG + chr5.2:59850094-59850113 MS.gene43828:CDS 55.0%
! AGCCAGAGCTTTATCGAGCG+CGG + chr5.2:59850691-59850710 MS.gene43828:CDS 55.0%
! GGTTGCGATGTTGATGGGGT+TGG + chr5.2:59849128-59849147 MS.gene43828:CDS 55.0%
AGTCGGCGATCCAATCACGC+TGG - chr5.2:59850599-59850618 None:intergenic 60.0%
ATGCAAGGCGACGCGATCCA+AGG + chr5.2:59849744-59849763 MS.gene43828:CDS 60.0%
CACCGCGCTCGATAAAGCTC+TGG - chr5.2:59850696-59850715 None:intergenic 60.0%
CCACATGGCTGCAGCAGCAA+TGG - chr5.2:59850131-59850150 None:intergenic 60.0%
CCATTGCTGCTGCAGCCATG+TGG + chr5.2:59850128-59850147 MS.gene43828:CDS 60.0%
CTTGATGCTGCAGGAGCAGC+AGG + chr5.2:59850484-59850503 MS.gene43828:CDS 60.0%
GACGCGGATAACTCCCTGGA+TGG - chr5.2:59850634-59850653 None:intergenic 60.0%
TCTAACTGGGGCTCACCCGA+TGG + chr5.2:59850766-59850785 MS.gene43828:CDS 60.0%
! AGTCAAAGGCGGCGTTGAGG+AGG - chr5.2:59850089-59850108 None:intergenic 60.0%
! CGTCGCCTTGCATTTTCCCC+TGG - chr5.2:59849737-59849756 None:intergenic 60.0%
! GTCAAAGGCGGCGTTGAGGA+GGG - chr5.2:59850088-59850107 None:intergenic 60.0%
AGCCGACGCGGATAACTCCC+TGG - chr5.2:59850638-59850657 None:intergenic 65.0%
TCCAGCTGCAGCTAGGGCAC+AGG + chr5.2:59850879-59850898 MS.gene43828:CDS 65.0%
TCCTGTGCCCTAGCTGCAGC+TGG - chr5.2:59850883-59850902 None:intergenic 65.0%
! AAAGGCGGCGTTGAGGAGGG+TGG - chr5.2:59850085-59850104 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 59848966 59851089 59848966 ID=MS.gene43828
chr5.2 mRNA 59848966 59851089 59848966 ID=MS.gene43828.t1;Parent=MS.gene43828
chr5.2 exon 59848966 59851089 59848966 ID=MS.gene43828.t1.exon1;Parent=MS.gene43828.t1
chr5.2 CDS 59848966 59851089 59848966 ID=cds.MS.gene43828.t1;Parent=MS.gene43828.t1
Gene Sequence

>MS.gene43828

ATGTGCAGTGATTCTAAGAAAAAAACTTGTCAAAAGGATTTGATCATGGGGTGTGAGTATGTGAATGGGAATAAAGAAGGGCAGTATCATGAGGTTTCTTATTTGCTTGAATTTTCAGCTGCAGATGATGTGGTTGGTTTAAAAAATGCGATTGAAAACGAGGGTTGCGATGTTGATGGGGTTGGTTTGTGGTATGGAAGGAAAGTTGGTTCGAACAAATTAGGTTATGAAGAGAGGACACCTCTCATGGTTGCAGCTATGTATGGAAGCTTGGATGTATCGGCTTATATTCTTGGAACAGGTCGGGTTGATGTTAATCGGTCTAGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCGGTTGTTGGGGGTTCTGCCGCTTCCCCCGAGATTATCAAGATTTTGCTTGATGCATCGGCGGATGCTAGTGCTGTTGATGCCAACGGTAACCGACCAGTTGATTTGATTGTTTCGCTGGCCAATTCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCTCTTTTGGATGGTACAGACGGTGCTGATCAGACATGTCTTCTGTTTCCGGAGACAATTGATGACATTGACGAATATCAAAGGCAAGATGTAAACACGCCTCGTGTTTCAAAAGATTATCCTGTTGATGTCTCTCTTCCAGACATTAAGAATGGGATATATAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTCGGAAAGGATCGTGCAGTAAAGGAGATTCTTGTGACTATGCACACGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATAAGACACGGCTTTGCAAGGATGAAGGTTCATGCATGAGAAGAGTTTGCTTCTTTGCTCACAAGGTCGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCTAGATCATATTACAGTACTGCTTCTACATTAGAGATGGGTTCAATTAGCCCAATGTCACTTGGTTCTCCATCTGTTTTGATACCACCCTCCTCAACGCCGCCTTTGACTTCATCTGGAGCGTCGTCTCCCATTGCTGCTGCAGCCATGTGGCAGACACCGTCTAATGTTTCGATCCCTACACTTCAGCTTCCCAAAAGCAGGTTGAAGACTGGAATGACCGCAAGAGATGTTAATTCAGATATTGCAATGCTTAGGGTTGAAACTCAGCGGCGAAAGCAGCAACTACTGATGGATGAGATGTCCGGTCTTTCCTCTCCTTCCAACTGGAATCATTCCATGCCTAACAGTCCATCTTTTCCGGGTTCTTTGACCAATCATACTACCGGGGAACTAAATAGGTTTTCGGGGGTGAATCCTACAAACCTTGAAGAAATTTTCGGGTCTCTTGATCCATCAATGTTGCATAAATTCCACAGAATTTCTCTTGATGCTGCAGGAGCAGCAGGATCTCAGCTACAATCTCCAACTGGAATCCAAATGCGTCCGAATATGAATCAGCATCTGCAACAAAACTATTCTTCAGGCCATTCCACTTCCAGCGTGATTGGATCGCCGACTTATAGGTTTGATCCATCCAGGGAGTTATCCGCGTCGGCTTTGAATGCAAGAGCTGCTGCATTTTCAAAACGGAGCCAGAGCTTTATCGAGCGCGGTGTCACAAACCGTCATTCTGAGCTTCATTCTCCTGCTAAGCCTTATGCTTTTTCTAACTGGGGCTCACCCGATGGAAATTTGGATTGGACTTCACACGGAGAAGAACTGAATAAGCTGAGGAAATCATCTTCTTTTGGATTTCGAACCACCAGTACTCCTTTAACTCCAGCTGCAGCTAGGGCACAGGAAAATGACTATGAACCAGATGTGTCTTGGGTTAATTCACTTGTGAAGGATGCTACACCGCAAGAATCTCATCAGTTTAGCGTTGAAGATCAGAAAAGGAAACTGCAGCGCCATCTTAACAATGGAACAGATTCGATTCCGGCTTGGTTGGAGCAATTGTACATGGATCAGGAGCAAATAGTGCAGTGA
Protein sequence

>MS.gene43828.t1

MCSDSKKKTCQKDLIMGCEYVNGNKEGQYHEVSYLLEFSAADDVVGLKNAIENEGCDVDGVGLWYGRKVGSNKLGYEERTPLMVAAMYGSLDVSAYILGTGRVDVNRSSGSDGATALHCAVVGGSAASPEIIKILLDASADASAVDANGNRPVDLIVSLANSIFNPRKRMLQALLDGTDGADQTCLLFPETIDDIDEYQRQDVNTPRVSKDYPVDVSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYKTRLCKDEGSCMRRVCFFAHKVEELRPLYASTGSAIPSPRSYYSTASTLEMGSISPMSLGSPSVLIPPSSTPPLTSSGASSPIAAAAMWQTPSNVSIPTLQLPKSRLKTGMTARDVNSDIAMLRVETQRRKQQLLMDEMSGLSSPSNWNHSMPNSPSFPGSLTNHTTGELNRFSGVNPTNLEEIFGSLDPSMLHKFHRISLDAAGAAGSQLQSPTGIQMRPNMNQHLQQNYSSGHSTSSVIGSPTYRFDPSRELSASALNARAAAFSKRSQSFIERGVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFGFRTTSTPLTPAAARAQENDYEPDVSWVNSLVKDATPQESHQFSVEDQKRKLQRHLNNGTDSIPAWLEQLYMDQEQIVQ