AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57026

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57026.t1 MTR_5g071070 96.181 707 24 1 1 707 1 704 0.0 1417
MS.gene57026.t1 MTR_5g071070 96.640 625 18 1 83 707 1 622 0.0 1251
MS.gene57026.t1 MTR_5g082830 49.568 694 297 13 30 706 25 682 0.0 634
MS.gene57026.t1 MTR_1g075890 54.294 652 205 14 1 642 1 569 0.0 617
MS.gene57026.t1 MTR_7g092070 42.229 682 291 19 35 663 47 678 2.47e-155 468
MS.gene57026.t1 MTR_3g029590 39.669 726 342 18 33 702 43 728 3.03e-147 446
MS.gene57026.t1 MTR_3g464280 44.049 647 199 17 1 641 1 490 3.68e-142 425
MS.gene57026.t1 MTR_3g464260 48.583 494 167 12 39 529 29 438 9.10e-133 402
MS.gene57026.t1 MTR_3g464260 44.521 146 49 7 571 706 405 528 1.15e-17 87.4
MS.gene57026.t1 MTR_3g070880 46.404 431 161 5 33 462 8 369 3.19e-124 380
MS.gene57026.t1 MTR_3g070880 32.569 218 121 9 483 698 322 515 4.06e-18 88.6
MS.gene57026.t1 MTR_1g050438 40.331 543 256 15 35 539 15 527 3.23e-109 343
MS.gene57026.t1 MTR_0728s0020 40.331 543 256 15 35 539 31 543 9.22e-109 343
MS.gene57026.t1 MTR_3g435590 45.232 367 169 7 32 378 29 383 4.51e-97 308
MS.gene57026.t1 MTR_3g464290 40.530 491 185 18 199 675 68 465 1.21e-79 262
MS.gene57026.t1 MTR_3g435680 41.194 335 139 10 138 451 44 341 1.15e-72 241
MS.gene57026.t1 MTR_3g464270 38.303 436 178 14 229 660 8 356 1.39e-68 229
MS.gene57026.t1 MTR_8g102100 43.498 223 115 3 162 381 21 235 1.42e-54 192
MS.gene57026.t1 MTR_6g090380 57.971 138 48 2 196 332 77 205 6.09e-52 185
MS.gene57026.t1 MTR_3g103960 49.419 172 73 3 202 372 32 190 1.35e-51 181
MS.gene57026.t1 MTR_2g090605 61.261 111 43 0 230 340 77 187 2.83e-47 173
MS.gene57026.t1 MTR_4g078660 57.009 107 46 0 226 332 56 162 3.60e-44 161
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57026.t1 AT5G58620 47.126 696 265 19 23 706 2 606 0.0 572
MS.gene57026.t1 AT2G40140 42.297 714 285 17 1 706 1 595 1.06e-173 510
MS.gene57026.t1 AT2G40140 42.297 714 285 17 1 706 1 595 1.06e-173 510
MS.gene57026.t1 AT2G41900 39.808 731 309 21 35 702 48 710 2.93e-144 438
MS.gene57026.t1 AT3G55980 50.000 474 194 13 1 462 1 443 3.73e-142 428
MS.gene57026.t1 AT3G55980 38.071 197 82 8 514 706 419 579 2.35e-21 99.4
MS.gene57026.t1 AT3G55980 50.000 474 194 13 1 462 68 510 1.27e-141 429
MS.gene57026.t1 AT3G55980 38.071 197 82 8 514 706 486 646 4.19e-21 98.6
MS.gene57026.t1 AT5G12850 38.267 750 306 25 30 702 37 706 1.59e-139 426
MS.gene57026.t1 AT4G29190 52.273 176 83 1 212 387 62 236 1.54e-54 191
MS.gene57026.t1 AT2G25900 66.964 112 37 0 226 337 86 197 3.47e-53 186
MS.gene57026.t1 AT2G25900 66.964 112 37 0 226 337 86 197 3.47e-53 186
MS.gene57026.t1 AT2G19810 63.333 120 44 0 215 334 63 182 8.01e-53 187
MS.gene57026.t1 AT5G07500 52.703 148 66 1 189 332 7 154 1.21e-49 174
MS.gene57026.t1 AT1G03790 51.634 153 66 3 197 345 53 201 2.46e-47 172
MS.gene57026.t1 AT5G44260 55.970 134 54 2 210 342 44 173 2.37e-45 167

Find 191 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAGTCTTCAACCTGCTTT+TGG 0.190182 5.1:-54824216 None:intergenic
TCAGACATGTCTTCTGTTTC+CGG 0.194365 5.1:+54823536 MS.gene57026:CDS
GATGTATCGGCTTATATTCT+TGG 0.209122 5.1:+54823264 MS.gene57026:CDS
CTCTTCATTGTGCGGTTGTT+GGG 0.225881 5.1:+54823337 MS.gene57026:CDS
AAAGTTGGTTCGAACAAATT+AGG 0.237750 5.1:+54823192 MS.gene57026:CDS
GGGCTCACCCGATGGAAATT+TGG 0.238746 5.1:+54824799 MS.gene57026:CDS
CTAGCTGCAGCTGGAGTTAA+AGG 0.264190 5.1:-54824896 None:intergenic
GAGGATGCTACAAGCTCTTT+TGG 0.287126 5.1:+54823494 MS.gene57026:CDS
CAAGGGCTTATTCTCATGAT+TGG 0.318225 5.1:+54823715 MS.gene57026:CDS
ATACGACCGGGGAACTAAAT+AGG 0.321029 5.1:+54824402 MS.gene57026:CDS
CTGCAACAAAACTATTCTTT+AGG 0.322445 5.1:+54824587 MS.gene57026:CDS
CTGAGGAAATCATCTTCATT+TGG 0.338854 5.1:+54824854 MS.gene57026:CDS
GTGTCCCTTGTCCTGAGTTT+CGG 0.340392 5.1:+54823808 MS.gene57026:CDS
GCTCTTCATTGTGCGGTTGT+TGG 0.359015 5.1:+54823336 MS.gene57026:CDS
GATTCATATTCGGACGCATT+TGG 0.363999 5.1:-54824559 None:intergenic
ACCTATAGGTTTGATCCATC+TGG 0.364237 5.1:+54824641 MS.gene57026:CDS
TGCAGATGCTGATTCATATT+CGG 0.365840 5.1:-54824569 None:intergenic
ACGCCGCCTTTGACTTCATC+TGG 0.368423 5.1:+54824119 MS.gene57026:CDS
GTCTTTCCTCTCCTTCCAAC+TGG 0.371979 5.1:+54824330 MS.gene57026:CDS
TATATAGTACCGATGAGTTT+AGG 0.375544 5.1:+54823664 MS.gene57026:CDS
TCCTGTGCCCTAGCTGCAGC+TGG 0.377666 5.1:-54824905 None:intergenic
CCTTGGATTGAAGATAGAAT+TGG 0.386827 5.1:-54823469 None:intergenic
CGCCCCTTGTATGCTTCTAC+CGG 0.390009 5.1:+54823984 MS.gene57026:CDS
GATGGGGTTGGTTTGTGGTA+TGG 0.391400 5.1:+54823165 MS.gene57026:CDS
AGCAAAATCTTGATAATCTC+GGG 0.396619 5.1:-54823375 None:intergenic
CATTCCACTTCTAGTGTGAT+TGG 0.397045 5.1:+54824611 MS.gene57026:CDS
CACATGGCTGCAGCAGCAAC+GGG 0.402327 5.1:-54824152 None:intergenic
ATTCAGATATTGCAATGCTT+AGG 0.408619 5.1:+54824258 MS.gene57026:CDS
AAAATGTCTTCAAGGTTTGT+AGG 0.409953 5.1:-54824440 None:intergenic
TGGAATTTATGCAACATTGA+TGG 0.416189 5.1:-54824476 None:intergenic
AATCTGTTCCGTTGTTAAGA+TGG 0.416969 5.1:-54825036 None:intergenic
TTCAGATATTGCAATGCTTA+GGG 0.419562 5.1:+54824259 MS.gene57026:CDS
TCGGCTTATATTCTTGGAAC+AGG 0.420142 5.1:+54823270 MS.gene57026:CDS
TTGTCAAAAGGATTTGATCA+TGG 0.420181 5.1:+54823017 MS.gene57026:CDS
TGATTGGATCGCCAACCTAT+AGG 0.421260 5.1:+54824627 MS.gene57026:CDS
TATATCCCATTCTTAATGTC+TGG 0.426530 5.1:-54823645 None:intergenic
CTCATGGTTGCAGCTATGTA+TGG 0.426552 5.1:+54823234 MS.gene57026:CDS
GCTTGTAGCATCCTCTTCCT+TGG 0.429452 5.1:-54823486 None:intergenic
GAAAAGGCATAAGGCTTAGC+AGG 0.430069 5.1:-54824770 None:intergenic
TCAAAGTGAAGCCTTGTTCA+AGG 0.431149 5.1:+54823697 MS.gene57026:CDS
AAGCAAAATCTTGATAATCT+CGG 0.433411 5.1:-54823376 None:intergenic
CTTGATGCTGCAGGAGCAGC+AGG 0.434896 5.1:+54824509 MS.gene57026:CDS
GAGACCCGAAAATGTCTTCA+AGG 0.438096 5.1:-54824448 None:intergenic
CTTATATTCTTGGAACAGGT+CGG 0.443594 5.1:+54823274 MS.gene57026:CDS
ATGTTGATGGGGTTGGTTTG+TGG 0.450945 5.1:+54823160 MS.gene57026:CDS
GTATGGTTGGTCGAAGAAAC+CGG 0.454341 5.1:-54824383 None:intergenic
GAGTGTCCCTTTGTTCATCC+AGG 0.455762 5.1:+54823741 MS.gene57026:CDS
GGTTGCGATGTTGATGGGGT+TGG 0.455769 5.1:+54823153 MS.gene57026:CDS
GCAGTACTGTAATATGATCT+AGG 0.457857 5.1:-54824023 None:intergenic
CACCCGATGGAAATTTGGAT+TGG 0.458700 5.1:+54824804 MS.gene57026:CDS
AGCGAAACAATCAAATCAAC+TGG 0.459199 5.1:-54823444 None:intergenic
AGTTGATTTGATTGTTTCGC+TGG 0.460352 5.1:+54823446 MS.gene57026:CDS
CCACATGGCTGCAGCAGCAA+CGG 0.462166 5.1:-54824153 None:intergenic
CAGCTATAATGATATTTCCT+TGG 0.464131 5.1:-54823786 None:intergenic
TGTCAAAAGGATTTGATCAT+GGG 0.468107 5.1:+54823018 MS.gene57026:CDS
CTTCTTTGCTCACAAGGTCG+AGG 0.469734 5.1:+54823956 MS.gene57026:CDS
ACGAGGGTTGCGATGTTGAT+GGG 0.471244 5.1:+54823148 MS.gene57026:CDS
TTGGGTTAATTCGCTTGTAA+AGG 0.474557 5.1:+54824952 MS.gene57026:CDS
TCTCTTCCAGACATTAAGAA+TGG 0.478120 5.1:+54823639 MS.gene57026:CDS
AGAATTTCACTTGATGCTGC+AGG 0.479378 5.1:+54824500 MS.gene57026:CDS
CTTTAACTCCAGCTGCAGCT+AGG 0.479692 5.1:+54824897 MS.gene57026:CDS
GGAGCAATTGTACATGGATC+AGG 0.480663 5.1:+54825075 MS.gene57026:CDS
CCCTTCAGCTTCCCAAAAGC+AGG 0.481050 5.1:+54824204 MS.gene57026:CDS
CTCTTCCAGACATTAAGAAT+GGG 0.482849 5.1:+54823640 MS.gene57026:CDS
GTCGAAGAAACCGGAAAAGA+TGG 0.483591 5.1:-54824374 None:intergenic
TACAATTGCTCCAACCAAGC+TGG 0.485537 5.1:-54825064 None:intergenic
TACTGCTTCTACATTAGAGA+TGG 0.486960 5.1:+54824040 MS.gene57026:CDS
TATGTGAATGGGAATAAAGA+AGG 0.487426 5.1:+54823048 MS.gene57026:CDS
CGGAAAGGATCGTGCAGTAA+AGG 0.487429 5.1:+54823828 MS.gene57026:CDS
ACCGGAAAAGATGGACTGTT+AGG 0.489839 5.1:-54824365 None:intergenic
AGCTGGAGTTAAAGGAGTAC+TGG 0.489995 5.1:-54824888 None:intergenic
TTATATTCTTGGAACAGGTC+GGG 0.491005 5.1:+54823275 MS.gene57026:CDS
TCTTCATTGTGCGGTTGTTG+GGG 0.492583 5.1:+54823338 MS.gene57026:CDS
TTGTGGTATGGAAGGAAAGT+TGG 0.493676 5.1:+54823177 MS.gene57026:CDS
ATGGGGTGTGAGTATGTGAA+TGG 0.494445 5.1:+54823036 MS.gene57026:CDS
AGATTCGATTCCAGCTTGGT+TGG 0.494600 5.1:+54825054 MS.gene57026:CDS
CAGGTCGGGTTGATGTTAAT+CGG 0.495738 5.1:+54823289 MS.gene57026:CDS
GTATGGAAGCTTGGATGTAT+CGG 0.499389 5.1:+54823251 MS.gene57026:CDS
CACTGCGCTCGATAAAGCTC+TGG 0.499905 5.1:-54824718 None:intergenic
TCTGGAAGAGAGACATCAAC+AGG 0.501027 5.1:-54823627 None:intergenic
CCCAGATGGATCAAACCTAT+AGG 0.501454 5.1:-54824642 None:intergenic
TTTAACTCCAGCTGCAGCTA+GGG 0.502176 5.1:+54824898 MS.gene57026:CDS
TATTTAGTTCCCCGGTCGTA+TGG 0.502935 5.1:-54824400 None:intergenic
AGGAGATGGAATAGCAGAAC+CGG 0.503649 5.1:-54824003 None:intergenic
TCTCAGTTACAATCTCCAAC+TGG 0.504676 5.1:+54824533 MS.gene57026:CDS
ATGGAGAACCAAGTGACATT+GGG 0.506623 5.1:-54824073 None:intergenic
GGACGCATTTGGATTCCAGT+TGG 0.507506 5.1:-54824548 None:intergenic
CCTATAGGTTTGATCCATCT+GGG 0.508102 5.1:+54824642 MS.gene57026:CDS
CTATGAACCAGATGTGTCTT+GGG 0.508226 5.1:+54824934 MS.gene57026:CDS
TCCAGCTGCAGCTAGGGCAC+AGG 0.510410 5.1:+54824904 MS.gene57026:CDS
CCCAAAAGCAGGTTGAAGAC+TGG 0.511273 5.1:+54824215 MS.gene57026:CDS
ACACGGCTTTGCAAGGATGA+AGG 0.512844 5.1:+54823912 MS.gene57026:CDS
TGCAGCTATGTATGGAAGCT+TGG 0.514902 5.1:+54823242 MS.gene57026:CDS
GAATTAACCCAAGACACATC+TGG 0.514995 5.1:-54824941 None:intergenic
TAGTTCCCCGGTCGTATGGT+TGG 0.517395 5.1:-54824396 None:intergenic
CAAAGTGAAGCCTTGTTCAA+GGG 0.517860 5.1:+54823698 MS.gene57026:CDS
ATGCAAGGCGACGCGATCCA+AGG 0.519136 5.1:+54823769 MS.gene57026:CDS
TTAGCGTTGAAGATCAGAAA+AGG 0.521469 5.1:+54825002 MS.gene57026:CDS
GATGGAGAACCAAGTGACAT+TGG 0.523747 5.1:-54824074 None:intergenic
AACGAGGGTTGCGATGTTGA+TGG 0.524302 5.1:+54823147 MS.gene57026:CDS
CGAAAACCTATTTAGTTCCC+CGG 0.524607 5.1:-54824408 None:intergenic
GCTCTGGCTCCGCTTTGAAA+AGG 0.525597 5.1:-54824702 None:intergenic
TCAATTAGCCCAATGTCACT+TGG 0.534086 5.1:+54824065 MS.gene57026:CDS
CCCCAGTTAGAAAAGGCATA+AGG 0.538596 5.1:-54824779 None:intergenic
GTCCAATCCAAATTTCCATC+GGG 0.538779 5.1:-54824806 None:intergenic
TCTTCGACCAACCATACGAC+CGG 0.541735 5.1:+54824389 MS.gene57026:CDS
CGATCCAATCACACTAGAAG+TGG 0.542472 5.1:-54824615 None:intergenic
GGGTGAGCCCCAGTTAGAAA+AGG 0.542739 5.1:-54824786 None:intergenic
ACTATGAACCAGATGTGTCT+TGG 0.542920 5.1:+54824933 MS.gene57026:CDS
ACTGCTTCTACATTAGAGAT+GGG 0.544371 5.1:+54824041 MS.gene57026:CDS
TTGGTTGGAGCAATTGTACA+TGG 0.546263 5.1:+54825069 MS.gene57026:CDS
GTCAAAGGCGGCGTTGAGGA+GGG 0.547086 5.1:-54824110 None:intergenic
CTATCTTCAATCCAAGGAAG+AGG 0.548194 5.1:+54823475 MS.gene57026:CDS
AGTTTGCTTCTTTGCTCACA+AGG 0.549883 5.1:+54823950 MS.gene57026:CDS
CACGATCCTTTCCGAAACTC+AGG 0.550059 5.1:-54823819 None:intergenic
GCGAAAGCAGCAACTACTGA+TGG 0.552696 5.1:+54824295 MS.gene57026:CDS
CTTCGACCAACCATACGACC+GGG 0.555663 5.1:+54824390 MS.gene57026:CDS
GAACAGATTCGATTCCAGCT+TGG 0.556097 5.1:+54825050 MS.gene57026:CDS
CCAATTCTATCTTCAATCCA+AGG 0.560551 5.1:+54823469 MS.gene57026:CDS
AGCCGTGTCTTATACTGCGC+AGG 0.561388 5.1:-54823897 None:intergenic
CTGTAATATGATCTAGGAGA+TGG 0.561399 5.1:-54824017 None:intergenic
AGTCAAAGGCGGCGTTGAGG+AGG 0.561805 5.1:-54824111 None:intergenic
TCAATGTCATCAATTGTCTC+CGG 0.563566 5.1:-54823555 None:intergenic
TTCATCCAGGGGAAAATGCA+AGG 0.563820 5.1:+54823754 MS.gene57026:CDS
AGAACCGGTAGAAGCATACA+AGG 0.565045 5.1:-54823988 None:intergenic
CTACTGATGGATGAGATGTC+CGG 0.565792 5.1:+54824308 MS.gene57026:CDS
GGGTTGGTTTGTGGTATGGA+AGG 0.567780 5.1:+54823169 MS.gene57026:CDS
GTTGATGTTAATCGGTCTAG+TGG 0.567818 5.1:+54823297 MS.gene57026:CDS
TCTAACTGGGGCTCACCCGA+TGG 0.570083 5.1:+54824791 MS.gene57026:CDS
TCAGCTGCAGATGATGTGGT+TGG 0.573637 5.1:+54823105 MS.gene57026:CDS
GAGGGTGGTATCAAAACAGA+TGG 0.574942 5.1:-54824092 None:intergenic
TGAAGAGAGGACACCTCTCA+TGG 0.576333 5.1:+54823218 MS.gene57026:CDS
ACAAATTAGGTTATGAAGAG+AGG 0.576520 5.1:+54823205 MS.gene57026:CDS
AGTGTCCCTTTGTTCATCCA+GGG 0.576667 5.1:+54823742 MS.gene57026:CDS
ATGGAATGATTCCAGTTGGA+AGG 0.579291 5.1:-54824341 None:intergenic
CCTTTCCGAAACTCAGGACA+AGG 0.580350 5.1:-54823813 None:intergenic
GTATAAGACACGGCTTTGCA+AGG 0.581068 5.1:+54823905 MS.gene57026:CDS
GTTGGAAGGAGAGGAAAGAC+CGG 0.583195 5.1:-54824327 None:intergenic
ATGATTCCAGTTGGAAGGAG+AGG 0.583775 5.1:-54824336 None:intergenic
GATGGATCAAACCTATAGGT+TGG 0.584232 5.1:-54824638 None:intergenic
AGTCCAATCCAAATTTCCAT+CGG 0.586204 5.1:-54824807 None:intergenic
ATGAAGAGCAGTAGCACCAT+CGG 0.586647 5.1:-54823322 None:intergenic
ATGTGAATGGGAATAAAGAA+GGG 0.588204 5.1:+54823049 MS.gene57026:CDS
GACGCGGATAACTCCCCAGA+TGG 0.588308 5.1:-54824656 None:intergenic
CCTTGTCCTGAGTTTCGGAA+AGG 0.590059 5.1:+54823813 MS.gene57026:CDS
AGGCATGGAATGATTCCAGT+TGG 0.590112 5.1:-54824345 None:intergenic
CCGTTGCTGCTGCAGCCATG+TGG 0.592506 5.1:+54824153 MS.gene57026:CDS
CAATCACACTAGAAGTGGAA+TGG 0.595527 5.1:-54824610 None:intergenic
ATCAACTGGTCGGTTACCGT+TGG 0.595630 5.1:-54823430 None:intergenic
ATCTGAATTAATATCTCTAG+CGG 0.595917 5.1:-54824243 None:intergenic
TGGGGTGTGAGTATGTGAAT+GGG 0.600624 5.1:+54823037 MS.gene57026:CDS
ATGACATTGACGAATATCAA+AGG 0.602422 5.1:+54823568 MS.gene57026:CDS
ATCTGGGGAGTTATCCGCGT+CGG 0.603525 5.1:+54824658 MS.gene57026:CDS
AATTTGGATTGGACTTCACA+CGG 0.603583 5.1:+54824815 MS.gene57026:CDS
CAGCATCAAGTGAAATTCTG+TGG 0.605687 5.1:-54824496 None:intergenic
TGCTACTGCTCTTCATTGTG+CGG 0.605703 5.1:+54823329 MS.gene57026:CDS
GAGAATGAAGCTCAGAATGA+CGG 0.613447 5.1:-54824748 None:intergenic
AAAAGATGGACTGTTAGGCA+TGG 0.613610 5.1:-54824360 None:intergenic
TGGATGAACAAAGGGACACT+CGG 0.617153 5.1:-54823739 None:intergenic
AATCGGTCTAGTGGATCCGA+TGG 0.617627 5.1:+54823306 MS.gene57026:CDS
TGTATACATCCTAAACTCAT+CGG 0.621538 5.1:-54823673 None:intergenic
TACATAGCTGCAACCATGAG+AGG 0.624576 5.1:-54823231 None:intergenic
GCAAAATCTTGATAATCTCG+GGG 0.625212 5.1:-54823374 None:intergenic
TGAGAATAAGCCCTTGAACA+AGG 0.627841 5.1:-54823708 None:intergenic
GTCAAAAGGATTTGATCATG+GGG 0.630254 5.1:+54823019 MS.gene57026:CDS
GTGTCCCTTTGTTCATCCAG+GGG 0.633464 5.1:+54823743 MS.gene57026:CDS
CGAGGGTTGCGATGTTGATG+GGG 0.634282 5.1:+54823149 MS.gene57026:CDS
CTTCATTGTGCGGTTGTTGG+GGG 0.635961 5.1:+54823339 MS.gene57026:CDS
GATGCTCCAGATGAAGTCAA+AGG 0.639371 5.1:-54824125 None:intergenic
AAACAATCAAATCAACTGGT+CGG 0.641933 5.1:-54823440 None:intergenic
CTAAACTGATGAGATTCTTG+CGG 0.647291 5.1:-54824983 None:intergenic
AAAGGCGGCGTTGAGGAGGG+TGG 0.647882 5.1:-54824107 None:intergenic
GCTAGTGCTGTTGATGCCAA+CGG 0.653244 5.1:+54823414 MS.gene57026:CDS
ATTAGACGGTGTCTGCCACA+TGG 0.653248 5.1:-54824168 None:intergenic
TAAAGAAGGGCAGTATCATG+AGG 0.655064 5.1:+54823062 MS.gene57026:CDS
TGGAGTTAAAGGAGTACTGG+TGG 0.655843 5.1:-54824885 None:intergenic
TGAAGTCAAAGGCGGCGTTG+AGG 0.657176 5.1:-54824114 None:intergenic
GAGAAGAACTGAATAAGCTG+AGG 0.666361 5.1:+54824837 MS.gene57026:CDS
TTCGACCAACCATACGACCG+GGG 0.672912 5.1:+54824391 MS.gene57026:CDS
TGCTTAGGGTTGAAACTCAG+CGG 0.673294 5.1:+54824273 MS.gene57026:CDS
AACCGGTAGAAGCATACAAG+GGG 0.673738 5.1:-54823986 None:intergenic
GAACCGGTAGAAGCATACAA+GGG 0.683674 5.1:-54823987 None:intergenic
CTGCAGCGCCATCTTAACAA+CGG 0.687526 5.1:+54825028 MS.gene57026:CDS
CTATAGGTTTGATCCATCTG+GGG 0.687753 5.1:+54824643 MS.gene57026:CDS
ATCCTGCGCAGTATAAGACA+CGG 0.689588 5.1:+54823895 MS.gene57026:CDS
CAAAATCTTGATAATCTCGG+GGG 0.705772 5.1:-54823373 None:intergenic
TCTTGCATTCAAAGCCGACG+CGG 0.707580 5.1:-54824672 None:intergenic
GATTCTTGTGACTATGCACA+CGG 0.716065 5.1:+54823852 MS.gene57026:CDS
CTTTCCGAAACTCAGGACAA+GGG 0.724035 5.1:-54823812 None:intergenic
GTAGGGATCGAAACATTAGA+CGG 0.728881 5.1:-54824182 None:intergenic
GCTCCAGATGAAGTCAAAGG+CGG 0.734283 5.1:-54824122 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAGAAAAAAACTTGTCAAA+AGG + chr5.1:54823005-54823024 MS.gene57026:CDS 20.0%
! ATCTGAATTAATATCTCTAG+CGG - chr5.1:54824246-54824265 None:intergenic 25.0%
!! AAGCAAAATCTTGATAATCT+CGG - chr5.1:54823379-54823398 None:intergenic 25.0%
AAAAAATGCGATTGAAAACG+AGG + chr5.1:54823131-54823150 MS.gene57026:CDS 30.0%
AAAAATGCGATTGAAAACGA+GGG + chr5.1:54823132-54823151 MS.gene57026:CDS 30.0%
AAAATGTCTTCAAGGTTTGT+AGG - chr5.1:54824443-54824462 None:intergenic 30.0%
AAACAATCAAATCAACTGGT+CGG - chr5.1:54823443-54823462 None:intergenic 30.0%
ACAAATTAGGTTATGAAGAG+AGG + chr5.1:54823205-54823224 MS.gene57026:CDS 30.0%
ATGACATTGACGAATATCAA+AGG + chr5.1:54823568-54823587 MS.gene57026:CDS 30.0%
ATGTGAATGGGAATAAAGAA+GGG + chr5.1:54823049-54823068 MS.gene57026:CDS 30.0%
ATTCAGATATTGCAATGCTT+AGG + chr5.1:54824258-54824277 MS.gene57026:CDS 30.0%
CAGCTATAATGATATTTCCT+TGG - chr5.1:54823789-54823808 None:intergenic 30.0%
CTGCAACAAAACTATTCTTT+AGG + chr5.1:54824587-54824606 MS.gene57026:CDS 30.0%
TATATCCCATTCTTAATGTC+TGG - chr5.1:54823648-54823667 None:intergenic 30.0%
TATGTGAATGGGAATAAAGA+AGG + chr5.1:54823048-54823067 MS.gene57026:CDS 30.0%
TGGAATTTATGCAACATTGA+TGG - chr5.1:54824479-54824498 None:intergenic 30.0%
TGTATACATCCTAAACTCAT+CGG - chr5.1:54823676-54823695 None:intergenic 30.0%
TGTCAAAAGGATTTGATCAT+GGG + chr5.1:54823018-54823037 MS.gene57026:CDS 30.0%
TTCAGATATTGCAATGCTTA+GGG + chr5.1:54824259-54824278 MS.gene57026:CDS 30.0%
TTGTCAAAAGGATTTGATCA+TGG + chr5.1:54823017-54823036 MS.gene57026:CDS 30.0%
! ACAAACCTTGAAGACATTTT+CGG + chr5.1:54824443-54824462 MS.gene57026:CDS 30.0%
! AGCAAAATCTTGATAATCTC+GGG - chr5.1:54823378-54823397 None:intergenic 30.0%
!! AAAGTTGGTTCGAACAAATT+AGG + chr5.1:54823192-54823211 MS.gene57026:CDS 30.0%
!! TATATAGTACCGATGAGTTT+AGG + chr5.1:54823664-54823683 MS.gene57026:CDS 30.0%
AATCTGTTCCGTTGTTAAGA+TGG - chr5.1:54825039-54825058 None:intergenic 35.0%
ACTGCTTCTACATTAGAGAT+GGG + chr5.1:54824041-54824060 MS.gene57026:CDS 35.0%
AGCGAAACAATCAAATCAAC+TGG - chr5.1:54823447-54823466 None:intergenic 35.0%
AGTCCAATCCAAATTTCCAT+CGG - chr5.1:54824810-54824829 None:intergenic 35.0%
CCAATTCTATCTTCAATCCA+AGG + chr5.1:54823469-54823488 MS.gene57026:CDS 35.0%
CCTTGGATTGAAGATAGAAT+TGG - chr5.1:54823472-54823491 None:intergenic 35.0%
CTAAACTGATGAGATTCTTG+CGG - chr5.1:54824986-54825005 None:intergenic 35.0%
CTCTTCCAGACATTAAGAAT+GGG + chr5.1:54823640-54823659 MS.gene57026:CDS 35.0%
CTGAGGAAATCATCTTCATT+TGG + chr5.1:54824854-54824873 MS.gene57026:CDS 35.0%
CTGTAATATGATCTAGGAGA+TGG - chr5.1:54824020-54824039 None:intergenic 35.0%
CTTATATTCTTGGAACAGGT+CGG + chr5.1:54823274-54823293 MS.gene57026:CDS 35.0%
GCAGTACTGTAATATGATCT+AGG - chr5.1:54824026-54824045 None:intergenic 35.0%
GTCAAAAGGATTTGATCATG+GGG + chr5.1:54823019-54823038 MS.gene57026:CDS 35.0%
TACTGCTTCTACATTAGAGA+TGG + chr5.1:54824040-54824059 MS.gene57026:CDS 35.0%
TCAATGTCATCAATTGTCTC+CGG - chr5.1:54823558-54823577 None:intergenic 35.0%
TCTCTTCCAGACATTAAGAA+TGG + chr5.1:54823639-54823658 MS.gene57026:CDS 35.0%
TTATATTCTTGGAACAGGTC+GGG + chr5.1:54823275-54823294 MS.gene57026:CDS 35.0%
TTGGGTTAATTCGCTTGTAA+AGG + chr5.1:54824952-54824971 MS.gene57026:CDS 35.0%
! AATTTGGATTGGACTTCACA+CGG + chr5.1:54824815-54824834 MS.gene57026:CDS 35.0%
! CAAAATCTTGATAATCTCGG+GGG - chr5.1:54823376-54823395 None:intergenic 35.0%
! CAAACCTTGAAGACATTTTC+GGG + chr5.1:54824444-54824463 MS.gene57026:CDS 35.0%
! CAAGATTTTGCTTGATGCAT+CGG + chr5.1:54823386-54823405 MS.gene57026:CDS 35.0%
! GCAAAATCTTGATAATCTCG+GGG - chr5.1:54823377-54823396 None:intergenic 35.0%
! TTAGCGTTGAAGATCAGAAA+AGG + chr5.1:54825002-54825021 MS.gene57026:CDS 35.0%
!! AGTTGATTTGATTGTTTCGC+TGG + chr5.1:54823446-54823465 MS.gene57026:CDS 35.0%
!! GATGTATCGGCTTATATTCT+TGG + chr5.1:54823264-54823283 MS.gene57026:CDS 35.0%
!! TGCAGATGCTGATTCATATT+CGG - chr5.1:54824572-54824591 None:intergenic 35.0%
!!! GGATAATCTTTTGAAACACG+AGG - chr5.1:54823609-54823628 None:intergenic 35.0%
ACCTATAGGTTTGATCCATC+TGG + chr5.1:54824641-54824660 MS.gene57026:CDS 40.0%
ACTATGAACCAGATGTGTCT+TGG + chr5.1:54824933-54824952 MS.gene57026:CDS 40.0%
AGAATTTCACTTGATGCTGC+AGG + chr5.1:54824500-54824519 MS.gene57026:CDS 40.0%
ATGGAATGATTCCAGTTGGA+AGG - chr5.1:54824344-54824363 None:intergenic 40.0%
ATGGAGAACCAAGTGACATT+GGG - chr5.1:54824076-54824095 None:intergenic 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr5.1:54823715-54823734 MS.gene57026:CDS 40.0%
CAATCACACTAGAAGTGGAA+TGG - chr5.1:54824613-54824632 None:intergenic 40.0%
CAGCATCAAGTGAAATTCTG+TGG - chr5.1:54824499-54824518 None:intergenic 40.0%
CATTCCACTTCTAGTGTGAT+TGG + chr5.1:54824611-54824630 MS.gene57026:CDS 40.0%
CCTATAGGTTTGATCCATCT+GGG + chr5.1:54824642-54824661 MS.gene57026:CDS 40.0%
CTATAGGTTTGATCCATCTG+GGG + chr5.1:54824643-54824662 MS.gene57026:CDS 40.0%
CTATCTTCAATCCAAGGAAG+AGG + chr5.1:54823475-54823494 MS.gene57026:CDS 40.0%
CTATGAACCAGATGTGTCTT+GGG + chr5.1:54824934-54824953 MS.gene57026:CDS 40.0%
GAATTAACCCAAGACACATC+TGG - chr5.1:54824944-54824963 None:intergenic 40.0%
GAGAAGAACTGAATAAGCTG+AGG + chr5.1:54824837-54824856 MS.gene57026:CDS 40.0%
GAGAATGAAGCTCAGAATGA+CGG - chr5.1:54824751-54824770 None:intergenic 40.0%
GATGGATCAAACCTATAGGT+TGG - chr5.1:54824641-54824660 None:intergenic 40.0%
GATTCATATTCGGACGCATT+TGG - chr5.1:54824562-54824581 None:intergenic 40.0%
GATTCTTGTGACTATGCACA+CGG + chr5.1:54823852-54823871 MS.gene57026:CDS 40.0%
GTAGGGATCGAAACATTAGA+CGG - chr5.1:54824185-54824204 None:intergenic 40.0%
GTATGGAAGCTTGGATGTAT+CGG + chr5.1:54823251-54823270 MS.gene57026:CDS 40.0%
GTCCAATCCAAATTTCCATC+GGG - chr5.1:54824809-54824828 None:intergenic 40.0%
GTTGATGTTAATCGGTCTAG+TGG + chr5.1:54823297-54823316 MS.gene57026:CDS 40.0%
TAAAGAAGGGCAGTATCATG+AGG + chr5.1:54823062-54823081 MS.gene57026:CDS 40.0%
TCAATTAGCCCAATGTCACT+TGG + chr5.1:54824065-54824084 MS.gene57026:CDS 40.0%
TCAGACATGTCTTCTGTTTC+CGG + chr5.1:54823536-54823555 MS.gene57026:CDS 40.0%
TCGGCTTATATTCTTGGAAC+AGG + chr5.1:54823270-54823289 MS.gene57026:CDS 40.0%
TCTCAGTTACAATCTCCAAC+TGG + chr5.1:54824533-54824552 MS.gene57026:CDS 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr5.1:54823711-54823730 None:intergenic 40.0%
TTGGTTGGAGCAATTGTACA+TGG + chr5.1:54825069-54825088 MS.gene57026:CDS 40.0%
TTGTGGTATGGAAGGAAAGT+TGG + chr5.1:54823177-54823196 MS.gene57026:CDS 40.0%
! AGTTTGCTTCTTTGCTCACA+AGG + chr5.1:54823950-54823969 MS.gene57026:CDS 40.0%
! ATGCTACAAGCTCTTTTGGA+TGG + chr5.1:54823498-54823517 MS.gene57026:CDS 40.0%
! ATTTTCAGCTGCAGATGATG+TGG + chr5.1:54823101-54823120 MS.gene57026:CDS 40.0%
! ATTTTCCCCTGGATGAACAA+AGG - chr5.1:54823751-54823770 None:intergenic 40.0%
! CCTTATGCCTTTTCTAACTG+GGG + chr5.1:54824779-54824798 MS.gene57026:CDS 40.0%
! CGAAAACCTATTTAGTTCCC+CGG - chr5.1:54824411-54824430 None:intergenic 40.0%
! CGGGGAACTAAATAGGTTTT+CGG + chr5.1:54824409-54824428 MS.gene57026:CDS 40.0%
! GCCTTATGCCTTTTCTAACT+GGG + chr5.1:54824778-54824797 MS.gene57026:CDS 40.0%
! GGAACTAAATAGGTTTTCGG+GGG + chr5.1:54824412-54824431 MS.gene57026:CDS 40.0%
! GGGAACTAAATAGGTTTTCG+GGG + chr5.1:54824411-54824430 MS.gene57026:CDS 40.0%
! GGGGAACTAAATAGGTTTTC+GGG + chr5.1:54824410-54824429 MS.gene57026:CDS 40.0%
! TTTTCCCCTGGATGAACAAA+GGG - chr5.1:54823750-54823769 None:intergenic 40.0%
!! AAAAGATGGACTGTTAGGCA+TGG - chr5.1:54824363-54824382 None:intergenic 40.0%
!! AGCCTTATGCCTTTTCTAAC+TGG + chr5.1:54824777-54824796 MS.gene57026:CDS 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr5.1:54823698-54823717 MS.gene57026:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr5.1:54823697-54823716 MS.gene57026:CDS 40.0%
AGATTCGATTCCAGCTTGGT+TGG + chr5.1:54825054-54825073 MS.gene57026:CDS 45.0%
AGGAGATGGAATAGCAGAAC+CGG - chr5.1:54824006-54824025 None:intergenic 45.0%
AGGCATGGAATGATTCCAGT+TGG - chr5.1:54824348-54824367 None:intergenic 45.0%
AGTGTCCCTTTGTTCATCCA+GGG + chr5.1:54823742-54823761 MS.gene57026:CDS 45.0%
ATACGACCGGGGAACTAAAT+AGG + chr5.1:54824402-54824421 MS.gene57026:CDS 45.0%
ATCCTGCGCAGTATAAGACA+CGG + chr5.1:54823895-54823914 MS.gene57026:CDS 45.0%
ATGAAGAGCAGTAGCACCAT+CGG - chr5.1:54823325-54823344 None:intergenic 45.0%
ATGATTCCAGTTGGAAGGAG+AGG - chr5.1:54824339-54824358 None:intergenic 45.0%
ATGGGGTGTGAGTATGTGAA+TGG + chr5.1:54823036-54823055 MS.gene57026:CDS 45.0%
CACCCGATGGAAATTTGGAT+TGG + chr5.1:54824804-54824823 MS.gene57026:CDS 45.0%
CCCAGATGGATCAAACCTAT+AGG - chr5.1:54824645-54824664 None:intergenic 45.0%
CGATCCAATCACACTAGAAG+TGG - chr5.1:54824618-54824637 None:intergenic 45.0%
CTCATGGTTGCAGCTATGTA+TGG + chr5.1:54823234-54823253 MS.gene57026:CDS 45.0%
CTCTTCATTGTGCGGTTGTT+GGG + chr5.1:54823337-54823356 MS.gene57026:CDS 45.0%
CTTTCCGAAACTCAGGACAA+GGG - chr5.1:54823815-54823834 None:intergenic 45.0%
GAACAGATTCGATTCCAGCT+TGG + chr5.1:54825050-54825069 MS.gene57026:CDS 45.0%
GAGACCCGAAAATGTCTTCA+AGG - chr5.1:54824451-54824470 None:intergenic 45.0%
GAGGGTGGTATCAAAACAGA+TGG - chr5.1:54824095-54824114 None:intergenic 45.0%
GATGCTCCAGATGAAGTCAA+AGG - chr5.1:54824128-54824147 None:intergenic 45.0%
GATGGAGAACCAAGTGACAT+TGG - chr5.1:54824077-54824096 None:intergenic 45.0%
GGAGCAATTGTACATGGATC+AGG + chr5.1:54825075-54825094 MS.gene57026:CDS 45.0%
GTATAAGACACGGCTTTGCA+AGG + chr5.1:54823905-54823924 MS.gene57026:CDS 45.0%
GTCGAAGAAACCGGAAAAGA+TGG - chr5.1:54824377-54824396 None:intergenic 45.0%
TACAATTGCTCCAACCAAGC+TGG - chr5.1:54825067-54825086 None:intergenic 45.0%
TACATAGCTGCAACCATGAG+AGG - chr5.1:54823234-54823253 None:intergenic 45.0%
TCTGGAAGAGAGACATCAAC+AGG - chr5.1:54823630-54823649 None:intergenic 45.0%
TCTTCATTGTGCGGTTGTTG+GGG + chr5.1:54823338-54823357 MS.gene57026:CDS 45.0%
TGATTGGATCGCCAACCTAT+AGG + chr5.1:54824627-54824646 MS.gene57026:CDS 45.0%
TGCAGCTATGTATGGAAGCT+TGG + chr5.1:54823242-54823261 MS.gene57026:CDS 45.0%
TGCTACTGCTCTTCATTGTG+CGG + chr5.1:54823329-54823348 MS.gene57026:CDS 45.0%
TGCTTAGGGTTGAAACTCAG+CGG + chr5.1:54824273-54824292 MS.gene57026:CDS 45.0%
TGGATGAACAAAGGGACACT+CGG - chr5.1:54823742-54823761 None:intergenic 45.0%
TGGGGTGTGAGTATGTGAAT+GGG + chr5.1:54823037-54823056 MS.gene57026:CDS 45.0%
TTCATCCAGGGGAAAATGCA+AGG + chr5.1:54823754-54823773 MS.gene57026:CDS 45.0%
TTTAACTCCAGCTGCAGCTA+GGG + chr5.1:54824898-54824917 MS.gene57026:CDS 45.0%
! AACCGGTAGAAGCATACAAG+GGG - chr5.1:54823989-54824008 None:intergenic 45.0%
! AGAACCGGTAGAAGCATACA+AGG - chr5.1:54823991-54824010 None:intergenic 45.0%
! AGCTGGAGTTAAAGGAGTAC+TGG - chr5.1:54824891-54824910 None:intergenic 45.0%
! CCCCAGTTAGAAAAGGCATA+AGG - chr5.1:54824782-54824801 None:intergenic 45.0%
! CTACTGATGGATGAGATGTC+CGG + chr5.1:54824308-54824327 MS.gene57026:CDS 45.0%
! GAAAAGGCATAAGGCTTAGC+AGG - chr5.1:54824773-54824792 None:intergenic 45.0%
! GAACCGGTAGAAGCATACAA+GGG - chr5.1:54823990-54824009 None:intergenic 45.0%
! GAGGATGCTACAAGCTCTTT+TGG + chr5.1:54823494-54823513 MS.gene57026:CDS 45.0%
! GATTTTGCTTGATGCATCGG+CGG + chr5.1:54823389-54823408 MS.gene57026:CDS 45.0%
! GCCTAACAGTCCATCTTTTC+CGG + chr5.1:54824364-54824383 MS.gene57026:CDS 45.0%
! GCTCTTTTGGATGGTACAGA+CGG + chr5.1:54823507-54823526 MS.gene57026:CDS 45.0%
! GTATGGTTGGTCGAAGAAAC+CGG - chr5.1:54824386-54824405 None:intergenic 45.0%
! TATTTAGTTCCCCGGTCGTA+TGG - chr5.1:54824403-54824422 None:intergenic 45.0%
! TCCAGTCTTCAACCTGCTTT+TGG - chr5.1:54824219-54824238 None:intergenic 45.0%
!! ACCGGAAAAGATGGACTGTT+AGG - chr5.1:54824368-54824387 None:intergenic 45.0%
!! ATGTTGATGGGGTTGGTTTG+TGG + chr5.1:54823160-54823179 MS.gene57026:CDS 45.0%
!! CAGGTCGGGTTGATGTTAAT+CGG + chr5.1:54823289-54823308 MS.gene57026:CDS 45.0%
!! CCAGTCTTCAACCTGCTTTT+GGG - chr5.1:54824218-54824237 None:intergenic 45.0%
!! TGGAGTTAAAGGAGTACTGG+TGG - chr5.1:54824888-54824907 None:intergenic 45.0%
!! TTTTGGGAAGCTGAAGGGTA+GGG - chr5.1:54824202-54824221 None:intergenic 45.0%
!!! CACACGGTATTTTTGAGTGC+TGG + chr5.1:54823868-54823887 MS.gene57026:CDS 45.0%
AACGAGGGTTGCGATGTTGA+TGG + chr5.1:54823147-54823166 MS.gene57026:CDS 50.0%
ACACGGCTTTGCAAGGATGA+AGG + chr5.1:54823912-54823931 MS.gene57026:CDS 50.0%
ACGAGGGTTGCGATGTTGAT+GGG + chr5.1:54823148-54823167 MS.gene57026:CDS 50.0%
ATCAACTGGTCGGTTACCGT+TGG - chr5.1:54823433-54823452 None:intergenic 50.0%
ATTAGACGGTGTCTGCCACA+TGG - chr5.1:54824171-54824190 None:intergenic 50.0%
CACGATCCTTTCCGAAACTC+AGG - chr5.1:54823822-54823841 None:intergenic 50.0%
CCTTGTCCTGAGTTTCGGAA+AGG + chr5.1:54823813-54823832 MS.gene57026:CDS 50.0%
CCTTTCCGAAACTCAGGACA+AGG - chr5.1:54823816-54823835 None:intergenic 50.0%
CGGAAAGGATCGTGCAGTAA+AGG + chr5.1:54823828-54823847 MS.gene57026:CDS 50.0%
CTAGCTGCAGCTGGAGTTAA+AGG - chr5.1:54824899-54824918 None:intergenic 50.0%
CTGCAGCGCCATCTTAACAA+CGG + chr5.1:54825028-54825047 MS.gene57026:CDS 50.0%
CTTCATTGTGCGGTTGTTGG+GGG + chr5.1:54823339-54823358 MS.gene57026:CDS 50.0%
CTTCTTTGCTCACAAGGTCG+AGG + chr5.1:54823956-54823975 MS.gene57026:CDS 50.0%
CTTTAACTCCAGCTGCAGCT+AGG + chr5.1:54824897-54824916 MS.gene57026:CDS 50.0%
GAGTGTCCCTTTGTTCATCC+AGG + chr5.1:54823741-54823760 MS.gene57026:CDS 50.0%
GCGAAAGCAGCAACTACTGA+TGG + chr5.1:54824295-54824314 MS.gene57026:CDS 50.0%
GCTCCAGATGAAGTCAAAGG+CGG - chr5.1:54824125-54824144 None:intergenic 50.0%
GCTCTTCATTGTGCGGTTGT+TGG + chr5.1:54823336-54823355 MS.gene57026:CDS 50.0%
GCTTGTAGCATCCTCTTCCT+TGG - chr5.1:54823489-54823508 None:intergenic 50.0%
GGACGCATTTGGATTCCAGT+TGG - chr5.1:54824551-54824570 None:intergenic 50.0%
GTCTTTCCTCTCCTTCCAAC+TGG + chr5.1:54824330-54824349 MS.gene57026:CDS 50.0%
GTGTCCCTTGTCCTGAGTTT+CGG + chr5.1:54823808-54823827 MS.gene57026:CDS 50.0%
GTGTCCCTTTGTTCATCCAG+GGG + chr5.1:54823743-54823762 MS.gene57026:CDS 50.0%
GTTGGAAGGAGAGGAAAGAC+CGG - chr5.1:54824330-54824349 None:intergenic 50.0%
TCAGCTGCAGATGATGTGGT+TGG + chr5.1:54823105-54823124 MS.gene57026:CDS 50.0%
TCTTCGACCAACCATACGAC+CGG + chr5.1:54824389-54824408 MS.gene57026:CDS 50.0%
TCTTGCATTCAAAGCCGACG+CGG - chr5.1:54824675-54824694 None:intergenic 50.0%
TGAAGAGAGGACACCTCTCA+TGG + chr5.1:54823218-54823237 MS.gene57026:CDS 50.0%
! AATCGGTCTAGTGGATCCGA+TGG + chr5.1:54823306-54823325 MS.gene57026:CDS 50.0%
! CCCAAAAGCAGGTTGAAGAC+TGG + chr5.1:54824215-54824234 MS.gene57026:CDS 50.0%
! GAGCTGCTGCCTTTTCAAAG+CGG + chr5.1:54824693-54824712 MS.gene57026:CDS 50.0%
! GCTAGTGCTGTTGATGCCAA+CGG + chr5.1:54823414-54823433 MS.gene57026:CDS 50.0%
!! ACCTGCTTTTGGGAAGCTGA+AGG - chr5.1:54824208-54824227 None:intergenic 50.0%
!! CCTGCTTTTGGGAAGCTGAA+GGG - chr5.1:54824207-54824226 None:intergenic 50.0%
!! CTTTTGGGAAGCTGAAGGGT+AGG - chr5.1:54824203-54824222 None:intergenic 50.0%
!! GATGGGGTTGGTTTGTGGTA+TGG + chr5.1:54823165-54823184 MS.gene57026:CDS 50.0%
!! GGGTTGGTTTGTGGTATGGA+AGG + chr5.1:54823169-54823188 MS.gene57026:CDS 50.0%
AGCCGTGTCTTATACTGCGC+AGG - chr5.1:54823900-54823919 None:intergenic 55.0%
ATCTGGGGAGTTATCCGCGT+CGG + chr5.1:54824658-54824677 MS.gene57026:CDS 55.0%
CACTGCGCTCGATAAAGCTC+TGG - chr5.1:54824721-54824740 None:intergenic 55.0%
CCCTTCAGCTTCCCAAAAGC+AGG + chr5.1:54824204-54824223 MS.gene57026:CDS 55.0%
CGAGGGTTGCGATGTTGATG+GGG + chr5.1:54823149-54823168 MS.gene57026:CDS 55.0%
CGCCCCTTGTATGCTTCTAC+CGG + chr5.1:54823984-54824003 MS.gene57026:CDS 55.0%
CTTCGACCAACCATACGACC+GGG + chr5.1:54824390-54824409 MS.gene57026:CDS 55.0%
GGGCTCACCCGATGGAAATT+TGG + chr5.1:54824799-54824818 MS.gene57026:CDS 55.0%
GGGTGAGCCCCAGTTAGAAA+AGG - chr5.1:54824789-54824808 None:intergenic 55.0%
TAGTTCCCCGGTCGTATGGT+TGG - chr5.1:54824399-54824418 None:intergenic 55.0%
TGAAGTCAAAGGCGGCGTTG+AGG - chr5.1:54824117-54824136 None:intergenic 55.0%
TTCGACCAACCATACGACCG+GGG + chr5.1:54824391-54824410 MS.gene57026:CDS 55.0%
! ACGCCGCCTTTGACTTCATC+TGG + chr5.1:54824119-54824138 MS.gene57026:CDS 55.0%
! GGTTGCGATGTTGATGGGGT+TGG + chr5.1:54823153-54823172 MS.gene57026:CDS 55.0%
!! GCTCTGGCTCCGCTTTGAAA+AGG - chr5.1:54824705-54824724 None:intergenic 55.0%
ATGCAAGGCGACGCGATCCA+AGG + chr5.1:54823769-54823788 MS.gene57026:CDS 60.0%
CACATGGCTGCAGCAGCAAC+GGG - chr5.1:54824155-54824174 None:intergenic 60.0%
CCACATGGCTGCAGCAGCAA+CGG - chr5.1:54824156-54824175 None:intergenic 60.0%
CTTGATGCTGCAGGAGCAGC+AGG + chr5.1:54824509-54824528 MS.gene57026:CDS 60.0%
GACGCGGATAACTCCCCAGA+TGG - chr5.1:54824659-54824678 None:intergenic 60.0%
TCTAACTGGGGCTCACCCGA+TGG + chr5.1:54824791-54824810 MS.gene57026:CDS 60.0%
! AGTCAAAGGCGGCGTTGAGG+AGG - chr5.1:54824114-54824133 None:intergenic 60.0%
! CGTCGCCTTGCATTTTCCCC+TGG - chr5.1:54823762-54823781 None:intergenic 60.0%
! GTCAAAGGCGGCGTTGAGGA+GGG - chr5.1:54824113-54824132 None:intergenic 60.0%
CCGTTGCTGCTGCAGCCATG+TGG + chr5.1:54824153-54824172 MS.gene57026:CDS 65.0%
TCCAGCTGCAGCTAGGGCAC+AGG + chr5.1:54824904-54824923 MS.gene57026:CDS 65.0%
TCCTGTGCCCTAGCTGCAGC+TGG - chr5.1:54824908-54824927 None:intergenic 65.0%
! AAAGGCGGCGTTGAGGAGGG+TGG - chr5.1:54824110-54824129 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 54822991 54825114 54822991 ID=MS.gene57026
chr5.1 mRNA 54822991 54825114 54822991 ID=MS.gene57026.t1;Parent=MS.gene57026
chr5.1 exon 54822991 54825114 54822991 ID=MS.gene57026.t1.exon1;Parent=MS.gene57026.t1
chr5.1 CDS 54822991 54825114 54822991 ID=cds.MS.gene57026.t1;Parent=MS.gene57026.t1
Gene Sequence

>MS.gene57026

ATGTGCAGTGATTCTAAGAAAAAAACTTGTCAAAAGGATTTGATCATGGGGTGTGAGTATGTGAATGGGAATAAAGAAGGGCAGTATCATGAGGTTTCTTATTTGCTTGAATTTTCAGCTGCAGATGATGTGGTTGGTTTAAAAAATGCGATTGAAAACGAGGGTTGCGATGTTGATGGGGTTGGTTTGTGGTATGGAAGGAAAGTTGGTTCGAACAAATTAGGTTATGAAGAGAGGACACCTCTCATGGTTGCAGCTATGTATGGAAGCTTGGATGTATCGGCTTATATTCTTGGAACAGGTCGGGTTGATGTTAATCGGTCTAGTGGATCCGATGGTGCTACTGCTCTTCATTGTGCGGTTGTTGGGGGTTCTGCTGCTTCCCCCGAGATTATCAAGATTTTGCTTGATGCATCGGCGGATGCTAGTGCTGTTGATGCCAACGGTAACCGACCAGTTGATTTGATTGTTTCGCTGGCCAATTCTATCTTCAATCCAAGGAAGAGGATGCTACAAGCTCTTTTGGATGGTACAGACGGTGCTGATCAGACATGTCTTCTGTTTCCGGAGACAATTGATGACATTGACGAATATCAAAGGCAAGATGTAAACACGCCTCGTGTTTCAAAAGATTATCCTGTTGATGTCTCTCTTCCAGACATTAAGAATGGGATATATAGTACCGATGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAGGCGACGCGATCCAAGGAAATATCATTATAGCTGTGTCCCTTGTCCTGAGTTTCGGAAAGGATCGTGCAGTAAAGGAGATTCTTGTGACTATGCACACGGTATTTTTGAGTGCTGGCTTCATCCTGCGCAGTATAAGACACGGCTTTGCAAGGATGAAGGTTCATGCATGAGAAGAGTTTGCTTCTTTGCTCACAAGGTCGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCTAGATCATATTACAGTACTGCTTCTACATTAGAGATGGGTTCAATTAGCCCAATGTCACTTGGTTCTCCATCTGTTTTGATACCACCCTCCTCAACGCCGCCTTTGACTTCATCTGGAGCATCGTCTCCCGTTGCTGCTGCAGCCATGTGGCAGACACCGTCTAATGTTTCGATCCCTACCCTTCAGCTTCCCAAAAGCAGGTTGAAGACTGGAATGACCGCTAGAGATATTAATTCAGATATTGCAATGCTTAGGGTTGAAACTCAGCGGCGAAAGCAGCAACTACTGATGGATGAGATGTCCGGTCTTTCCTCTCCTTCCAACTGGAATCATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTCGACCAACCATACGACCGGGGAACTAAATAGGTTTTCGGGGGTGAATCCTACAAACCTTGAAGACATTTTCGGGTCTCTTGATCCATCAATGTTGCATAAATTCCACAGAATTTCACTTGATGCTGCAGGAGCAGCAGGATCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCGAATATGAATCAGCATCTGCAACAAAACTATTCTTTAGGCCATTCCACTTCTAGTGTGATTGGATCGCCAACCTATAGGTTTGATCCATCTGGGGAGTTATCCGCGTCGGCTTTGAATGCAAGAGCTGCTGCCTTTTCAAAGCGGAGCCAGAGCTTTATCGAGCGCAGTGTCACAAACCGTCATTCTGAGCTTCATTCTCCTGCTAAGCCTTATGCCTTTTCTAACTGGGGCTCACCCGATGGAAATTTGGATTGGACTTCACACGGAGAAGAACTGAATAAGCTGAGGAAATCATCTTCATTTGGATTTCGAACCACCAGTACTCCTTTAACTCCAGCTGCAGCTAGGGCACAGGAAAATGACTATGAACCAGATGTGTCTTGGGTTAATTCGCTTGTAAAGGATGCTACGCCGCAAGAATCTCATCAGTTTAGCGTTGAAGATCAGAAAAGGAAACTGCAGCGCCATCTTAACAACGGAACAGATTCGATTCCAGCTTGGTTGGAGCAATTGTACATGGATCAGGAGCAAATAGTGCAGTGA
Protein sequence

>MS.gene57026.t1

MCSDSKKKTCQKDLIMGCEYVNGNKEGQYHEVSYLLEFSAADDVVGLKNAIENEGCDVDGVGLWYGRKVGSNKLGYEERTPLMVAAMYGSLDVSAYILGTGRVDVNRSSGSDGATALHCAVVGGSAASPEIIKILLDASADASAVDANGNRPVDLIVSLANSIFNPRKRMLQALLDGTDGADQTCLLFPETIDDIDEYQRQDVNTPRVSKDYPVDVSLPDIKNGIYSTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYKTRLCKDEGSCMRRVCFFAHKVEELRPLYASTGSAIPSPRSYYSTASTLEMGSISPMSLGSPSVLIPPSSTPPLTSSGASSPVAAAAMWQTPSNVSIPTLQLPKSRLKTGMTARDINSDIAMLRVETQRRKQQLLMDEMSGLSSPSNWNHSMPNSPSFPVSSTNHTTGELNRFSGVNPTNLEDIFGSLDPSMLHKFHRISLDAAGAAGSQLQSPTGIQMRPNMNQHLQQNYSLGHSTSSVIGSPTYRFDPSGELSASALNARAAAFSKRSQSFIERSVTNRHSELHSPAKPYAFSNWGSPDGNLDWTSHGEELNKLRKSSSFGFRTTSTPLTPAAARAQENDYEPDVSWVNSLVKDATPQESHQFSVEDQKRKLQRHLNNGTDSIPAWLEQLYMDQEQIVQ