AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene29657

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29657.t1 MTR_5g082830 98.097 683 13 0 1 683 1 683 0.0 1390
MS.gene29657.t1 MTR_5g071070 48.476 722 313 14 1 682 1 703 0.0 640
MS.gene29657.t1 MTR_5g071070 49.375 640 270 13 78 682 1 621 0.0 579
MS.gene29657.t1 MTR_1g075890 44.444 693 289 17 1 643 1 647 4.49e-175 514
MS.gene29657.t1 MTR_7g092070 42.818 724 305 22 30 683 47 731 2.30e-168 500
MS.gene29657.t1 MTR_3g070880 62.250 400 86 7 16 414 1 336 1.32e-165 485
MS.gene29657.t1 MTR_3g070880 52.282 241 87 9 439 674 298 515 9.32e-55 196
MS.gene29657.t1 MTR_3g029590 40.496 726 317 22 28 678 43 728 9.42e-147 444
MS.gene29657.t1 MTR_3g464260 46.485 441 159 10 33 463 28 401 1.38e-116 360
MS.gene29657.t1 MTR_3g464260 31.507 219 104 9 477 683 345 529 4.48e-14 75.9
MS.gene29657.t1 MTR_3g464280 39.241 632 234 20 1 624 1 490 3.23e-110 342
MS.gene29657.t1 MTR_1g050438 37.452 526 254 13 30 509 15 511 9.27e-104 328
MS.gene29657.t1 MTR_0728s0020 37.452 526 254 13 30 509 31 527 2.20e-103 328
MS.gene29657.t1 MTR_3g435590 43.552 411 195 7 1 385 1 400 2.71e-103 323
MS.gene29657.t1 MTR_3g435680 46.048 291 119 6 133 398 44 321 9.79e-75 246
MS.gene29657.t1 MTR_3g464290 36.008 511 209 17 150 640 39 451 5.16e-71 238
MS.gene29657.t1 MTR_3g464270 36.300 427 190 15 216 638 8 356 1.70e-59 204
MS.gene29657.t1 MTR_8g102100 48.826 213 100 4 213 420 77 285 1.84e-54 191
MS.gene29657.t1 MTR_6g090380 68.519 108 34 0 212 319 98 205 1.84e-51 183
MS.gene29657.t1 MTR_3g103960 52.795 161 61 3 207 366 43 189 5.95e-49 173
MS.gene29657.t1 MTR_2g090605 64.865 111 37 1 217 325 77 187 8.21e-48 174
MS.gene29657.t1 MTR_4g078660 60.748 107 42 0 213 319 56 162 6.53e-46 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene29657.t1 AT2G40140 50.933 697 227 20 1 683 1 596 0.0 600
MS.gene29657.t1 AT2G40140 50.933 697 227 20 1 683 1 596 0.0 600
MS.gene29657.t1 AT5G58620 49.554 672 247 15 28 683 12 607 0.0 590
MS.gene29657.t1 AT3G55980 50.217 691 225 17 1 683 1 580 0.0 581
MS.gene29657.t1 AT3G55980 60.671 417 146 6 1 413 68 470 2.03e-168 497
MS.gene29657.t1 AT3G55980 46.277 188 65 7 498 683 494 647 4.90e-28 120
MS.gene29657.t1 AT2G41900 40.393 713 319 19 30 683 48 713 5.53e-144 437
MS.gene29657.t1 AT5G12850 40.470 724 307 25 25 678 37 706 1.47e-143 436
MS.gene29657.t1 AT5G07500 62.698 126 47 0 194 319 29 154 3.06e-55 189
MS.gene29657.t1 AT4G29190 46.256 227 110 4 195 420 58 273 1.65e-54 191
MS.gene29657.t1 AT2G25900 68.224 107 34 0 213 319 86 192 3.29e-51 181
MS.gene29657.t1 AT2G25900 68.224 107 34 0 213 319 86 192 3.29e-51 181
MS.gene29657.t1 AT2G19810 63.559 118 43 0 202 319 63 180 1.06e-50 181
MS.gene29657.t1 AT1G03790 55.263 152 54 3 213 360 78 219 7.85e-49 176
MS.gene29657.t1 AT5G44260 62.963 108 39 1 213 319 56 163 3.31e-44 163

Find 200 sgRNAs with CRISPR-Local

Find 214 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGAAGGTGGTTCATGTTT+TGG 0.196801 5.1:-64901516 None:intergenic
CTGAGGAAATCCGCTTCTTT+TGG 0.202534 5.1:+64901820 MS.gene29657:CDS
CTGCCACATGTTTCCACTCT+TGG 0.215837 5.1:-64901128 None:intergenic
CTTATGATTGCTTCCTTGTT+TGG 0.250098 5.1:+64900236 MS.gene29657:CDS
GACATAAACAACGGTGTATA+TGG 0.256569 5.1:+64900626 MS.gene29657:CDS
ACTCGCAAGAATCTCCTTTC+TGG 0.258493 5.1:-64900820 None:intergenic
CGATTTGGACAACGAATTAA+AGG 0.268967 5.1:-64900468 None:intergenic
TGTAGTTGAGATAGTAAATT+AGG 0.275386 5.1:-64901409 None:intergenic
ATCTGTTGTGTGGGTGTTGA+TGG 0.295601 5.1:-64901448 None:intergenic
GTCGTCCGGCCTTTCAGATT+GGG 0.298046 5.1:+64901744 MS.gene29657:CDS
TGTCGTCCGGCCTTTCAGAT+TGG 0.305721 5.1:+64901743 MS.gene29657:CDS
CGCCCTGTGTATGCTTCCAC+TGG 0.306630 5.1:+64900962 MS.gene29657:CDS
GCTCTTCATTGTGCTGTTGC+TGG 0.308167 5.1:+64900338 MS.gene29657:CDS
CAACACCTTCCTACGCGATT+TGG 0.321673 5.1:-64900483 None:intergenic
CGGAGTTTGTGGTTCCGATA+TGG 0.322011 5.1:+64900310 MS.gene29657:CDS
TACACAGGGCGCAGCTCTTC+GGG 0.323359 5.1:-64900950 None:intergenic
TTGGGTTAATTCATTGGTTA+AGG 0.328824 5.1:+64901903 MS.gene29657:CDS
TGCCACATGTTTCCACTCTT+GGG 0.340074 5.1:-64901127 None:intergenic
CAGCTGCAGTGATGAATTCT+AGG 0.343853 5.1:+64901620 MS.gene29657:CDS
AGAAGTAGATGAGAAGGGTT+TGG 0.348805 5.1:+64900139 MS.gene29657:CDS
TGTCTCTTGGGTTAATTCAT+TGG 0.351526 5.1:+64901897 MS.gene29657:CDS
TCTGAGAATTCCGGTGTATA+TGG 0.353483 5.1:+64901934 MS.gene29657:CDS
CGCCTTCCAACTCTTCCTGC+AGG 0.355846 5.1:+64901719 MS.gene29657:CDS
TTTGGCCCATGTTCATGTTT+TGG 0.358068 5.1:-64901498 None:intergenic
TATATGGATCAGATGAGTTT+AGG 0.370932 5.1:+64900642 MS.gene29657:CDS
ATACACAGGGCGCAGCTCTT+CGG 0.372892 5.1:-64900951 None:intergenic
ATTTGAATGAAGAAGGCTTT+TGG 0.383843 5.1:+64900162 MS.gene29657:CDS
GACATCAGGCTCAGCATGTT+GGG 0.385432 5.1:-64901878 None:intergenic
CTCCTCCTTGCATTCTCACC+TGG 0.394967 5.1:-64900737 None:intergenic
ATGCTGAGCCTGATGTCTCT+TGG 0.404935 5.1:+64901884 MS.gene29657:CDS
CCCCACTGGGAAACTCGATT+GGG 0.408358 5.1:+64901771 MS.gene29657:CDS
CAAGACCCTTTGCGAAACTC+TGG 0.410056 5.1:-64900797 None:intergenic
TTCTGTTGAATTCGCTGTTA+CGG 0.410177 5.1:-64901336 None:intergenic
GTCAATTCCACTAGCTGAAT+AGG 0.414997 5.1:-64901008 None:intergenic
GAGGAAGGCATATTGTTTGA+TGG 0.415999 5.1:-64901547 None:intergenic
CGCAAAGGGTCTTGCCAGAA+AGG 0.418356 5.1:+64900806 MS.gene29657:CDS
TGGGATGCAGTTGGTGCTGC+TGG 0.418675 5.1:-64901859 None:intergenic
GTCAAGCTCTTGCTTGATGC+CGG 0.418825 5.1:+64900386 MS.gene29657:CDS
TATGGTGAGGGCTTCCTCAC+TGG 0.419808 5.1:-64901571 None:intergenic
CGTCCTTGCAAAGCCTTGTT+CGG 0.424614 5.1:-64900886 None:intergenic
CAGCTGTAAGGGTATTTCCT+TGG 0.426047 5.1:-64900764 None:intergenic
ATTGATGTCAACGGAGTTTG+TGG 0.428144 5.1:+64900299 MS.gene29657:CDS
TCGGGCAACGATATATCAAT+AGG 0.428410 5.1:-64900605 None:intergenic
GTCGAGTATATTCTTTCGAC+AGG 0.429694 5.1:+64900272 MS.gene29657:CDS
CTGCAGCTGCCGCATATTCT+CGG 0.430426 5.1:-64901959 None:intergenic
AAGAGGTCATCAAGGTTAGT+TGG 0.431942 5.1:-64901373 None:intergenic
GTGAGGAAGCCCTCACCATA+TGG 0.432783 5.1:+64901574 MS.gene29657:CDS
GCACTCTTCAAACGGCTACC+TGG 0.432870 5.1:-64901187 None:intergenic
AGCTGTAAGGGTATTTCCTT+GGG 0.442755 5.1:-64900763 None:intergenic
CCACTAGCTGAATAGGACTT+TGG 0.443786 5.1:-64901001 None:intergenic
GATGTTCCATCTGAGAATTC+CGG 0.446112 5.1:+64901925 MS.gene29657:CDS
AATTCGCTGTTACGGAAAGA+TGG 0.453909 5.1:-64901328 None:intergenic
GGGCAGGGAACACAGCTGTA+AGG 0.457289 5.1:-64900776 None:intergenic
GTTTAGGATGTACAGTTTCA+AGG 0.458638 5.1:+64900658 MS.gene29657:CDS
TGCTGAGCCTGATGTCTCTT+GGG 0.461989 5.1:+64901885 MS.gene29657:CDS
TATACACCGTTGTTTATGTC+GGG 0.462321 5.1:-64900623 None:intergenic
GGTTTGGATTTGAATGAAGA+AGG 0.464213 5.1:+64900155 MS.gene29657:CDS
CCCTTTGCGAAACTCTGGGC+AGG 0.465980 5.1:-64900792 None:intergenic
CACTCAAAGCACTCTTCAAA+CGG 0.468740 5.1:-64901195 None:intergenic
TGAGATGGAATTGCTCGGTC+TGG 0.469920 5.1:+64901234 MS.gene29657:CDS
GGCTTCCTCACTGGAGAGGA+AGG 0.472160 5.1:-64901562 None:intergenic
CTACCTGGGAGCTGCAACGA+TGG 0.472506 5.1:-64901172 None:intergenic
CAAGAGAGAAGTAGATGAGA+AGG 0.474046 5.1:+64900133 MS.gene29657:CDS
TGGCGCATCTGCATTGCACT+TGG 0.475619 5.1:-64901478 None:intergenic
TTCTCACCTGGATGAACAAA+GGG 0.476487 5.1:-64900725 None:intergenic
AAGAGAGAAGTAGATGAGAA+GGG 0.478152 5.1:+64900134 MS.gene29657:CDS
AACAAGGAAGCAATCATAAG+AGG 0.482396 5.1:-64900233 None:intergenic
CATGGAGGATAAGCTTCAAA+AGG 0.484482 5.1:+64900052 MS.gene29657:CDS
GCTGGCGCAATCAGATCAAC+CGG 0.486158 5.1:-64900446 None:intergenic
CACTCTTCAAACGGCTACCT+GGG 0.486258 5.1:-64901186 None:intergenic
CACCACGGTCAATGAAACTT+TGG 0.491260 5.1:-64901669 None:intergenic
GGTGCTGCAACTCACCATCT+TGG 0.497686 5.1:+64901688 MS.gene29657:CDS
AACACCACCCATGTCTCCCT+TGG 0.506352 5.1:+64901090 MS.gene29657:CDS
AAACTCGATTGGGGTGTAAA+CGG 0.506355 5.1:+64901781 MS.gene29657:CDS
ATGAAGAGCAGTGGCCATAT+CGG 0.506470 5.1:-64900324 None:intergenic
TGTGGGTGTTGATGGTTGCA+TGG 0.506859 5.1:-64901440 None:intergenic
AGGCTTTGCAAGGACGAGAC+TGG 0.506964 5.1:+64900893 MS.gene29657:CDS
CACTCTAGTGCTTCCAAACA+AGG 0.508719 5.1:-64900249 None:intergenic
TCTTCCTGCAGGGTGTCGTC+CGG 0.509386 5.1:+64901730 MS.gene29657:CDS
TGAAGAGTGCTTTGAGTGCA+AGG 0.510749 5.1:+64901200 MS.gene29657:CDS
TTGGCTGCGCTGCTTTGCAA+AGG 0.511458 5.1:-64901650 None:intergenic
CTTCATTGTGCTGTTGCTGG+TGG 0.512690 5.1:+64900341 MS.gene29657:CDS
TCGTCCGGCCTTTCAGATTG+GGG 0.513214 5.1:+64901745 MS.gene29657:CDS
AGCCTTGTTCGGTATTGTGC+GGG 0.515045 5.1:-64900875 None:intergenic
CCACCCATGTCTCCCTTGGC+AGG 0.517296 5.1:+64901094 MS.gene29657:CDS
AGACATCAGGCTCAGCATGT+TGG 0.517932 5.1:-64901879 None:intergenic
TTGTACATCTGCTCCACCCA+TGG 0.518688 5.1:-64902012 None:intergenic
TGATGCTAGTGGAAACAAAC+CGG 0.520501 5.1:+64900427 MS.gene29657:CDS
AATTTACTATCTCAACTACA+TGG 0.520900 5.1:+64901412 MS.gene29657:CDS
TCGAGACGTGCTTCCACCAT+GGG 0.522786 5.1:+64901996 MS.gene29657:CDS
TTCATCCAGGTGAGAATGCA+AGG 0.523324 5.1:+64900732 MS.gene29657:CDS
ATTCGCTGTTACGGAAAGAT+GGG 0.523731 5.1:-64901327 None:intergenic
GGAACCCCAATCTGAAAGGC+CGG 0.526956 5.1:-64901749 None:intergenic
AAGAATTGGATCGAAGAAGA+TGG 0.527469 5.1:+64900193 MS.gene29657:CDS
CGACACCCTGCAGGAAGAGT+TGG 0.530364 5.1:-64901725 None:intergenic
GTACAAAGAGCAGGAGCAGA+TGG 0.534247 5.1:+64902029 MS.gene29657:CDS
CCACCATCGTTGCAGCTCCC+AGG 0.534409 5.1:+64901169 MS.gene29657:CDS
CCCTGCCCAGAGTTTCGCAA+AGG 0.536018 5.1:+64900791 MS.gene29657:CDS
GAATTAACCCAAGAGACATC+AGG 0.537150 5.1:-64901892 None:intergenic
GGAGCAGATGTACAAAGAGC+AGG 0.537466 5.1:+64902020 MS.gene29657:CDS
CCAAAGTCCTATTCAGCTAG+TGG 0.541639 5.1:+64901001 MS.gene29657:CDS
GCCTTCCAACTCTTCCTGCA+GGG 0.542634 5.1:+64901720 MS.gene29657:CDS
CCTGCCCAGAGTTTCGCAAA+GGG 0.543026 5.1:+64900792 MS.gene29657:CDS
GAGTGTCCCTTTGTTCATCC+AGG 0.543113 5.1:+64900719 MS.gene29657:CDS
ATTTCTGAATCCAAAAGAAG+CGG 0.548536 5.1:-64901830 None:intergenic
GTTGTCCAAATCGCGTAGGA+AGG 0.549554 5.1:+64900478 MS.gene29657:CDS
GGGAGATGATGAACCTGCCA+AGG 0.553827 5.1:-64901107 None:intergenic
AGAAGATGGAATCTGAAAAG+AGG 0.553960 5.1:+64900207 MS.gene29657:CDS
CGAGGGCTTACTCTCACGAT+TGG 0.553989 5.1:+64900693 MS.gene29657:CDS
TGGAGAATGCATCTGTTGTG+TGG 0.555021 5.1:-64901458 None:intergenic
TTGGACAACGAATTAAAGGC+TGG 0.557548 5.1:-64900464 None:intergenic
GGCAGGGAACACAGCTGTAA+GGG 0.559340 5.1:-64900775 None:intergenic
ATATACACCGTTGTTTATGT+CGG 0.561652 5.1:-64900624 None:intergenic
GCTGATGAATCAAATCCATA+TGG 0.562833 5.1:-64901589 None:intergenic
AAGCCTTGTTCGGTATTGTG+CGG 0.563056 5.1:-64900876 None:intergenic
TTCTTCATCAGACTGTGCCA+TGG 0.563892 5.1:+64900034 MS.gene29657:CDS
AAGACCCTTTGCGAAACTCT+GGG 0.564593 5.1:-64900796 None:intergenic
CATCACTGCAGCTGCTACTG+CGG 0.565349 5.1:-64901611 None:intergenic
AAGGCCGGACGACACCCTGC+AGG 0.568796 5.1:-64901734 None:intergenic
GACCCAGTGGAAGCATACAC+AGG 0.570204 5.1:-64900965 None:intergenic
GATCTTGAGATGGAATTGCT+CGG 0.572830 5.1:+64901229 MS.gene29657:CDS
CCTGGGAGCTGCAACGATGG+TGG 0.572925 5.1:-64901169 None:intergenic
GATGCGCCAAAACATGAACA+TGG 0.573046 5.1:+64901492 MS.gene29657:CDS
AGACGTGCTTCCACCATGGG+TGG 0.573955 5.1:+64901999 MS.gene29657:CDS
CTTGTTTGGAAGCACTAGAG+TGG 0.576155 5.1:+64900250 MS.gene29657:CDS
TGAACCTGCCAAGGGAGACA+TGG 0.576779 5.1:-64901098 None:intergenic
AGACAATTCAAGCAAGATTG+AGG 0.577524 5.1:-64900087 None:intergenic
ATGGAGGATAAGCTTCAAAA+GGG 0.579380 5.1:+64900053 MS.gene29657:CDS
ATCCCGCACAATACCGAACA+AGG 0.579739 5.1:+64900873 MS.gene29657:CDS
AAGACAATCAGCATCTGCAC+CGG 0.580324 5.1:-64900405 None:intergenic
GTCGAGACGTGCTTCCACCA+TGG 0.580527 5.1:+64901995 MS.gene29657:CDS
TGAGAGTAAGCCCTCGAGCA+TGG 0.580982 5.1:-64900686 None:intergenic
ATGGATAACTTGCGCGAAGG+TGG 0.584205 5.1:-64901528 None:intergenic
AAGGAGCGTCCATCTCCCCT+TGG 0.584326 5.1:-64900544 None:intergenic
TGAACTCATCCAAGGGGAGA+TGG 0.584869 5.1:+64900535 MS.gene29657:CDS
CAAATCGCGTAGGAAGGTGT+TGG 0.585250 5.1:+64900484 MS.gene29657:CDS
GCTGATTGTCTTGATGCTAG+TGG 0.585414 5.1:+64900416 MS.gene29657:CDS
GGAGAATGCATCTGTTGTGT+GGG 0.590736 5.1:-64901457 None:intergenic
GAAGAGTGCTTTGAGTGCAA+GGG 0.591839 5.1:+64901201 MS.gene29657:CDS
ATTTACTATCTCAACTACAT+GGG 0.597158 5.1:+64901413 MS.gene29657:CDS
ATACCGAACAAGGCTTTGCA+AGG 0.600596 5.1:+64900883 MS.gene29657:CDS
TAGGATCAGCTGATGCTAAG+AGG 0.602013 5.1:-64901390 None:intergenic
CAAGGTGAAGCCATGCTCGA+GGG 0.603335 5.1:+64900676 MS.gene29657:CDS
TCAAGGTGAAGCCATGCTCG+AGG 0.606783 5.1:+64900675 MS.gene29657:CDS
GAATCAAATCCATATGGTGA+GGG 0.607337 5.1:-64901583 None:intergenic
AGGATTTGGATTATGTGCAG+TGG 0.608930 5.1:+64899996 None:intergenic
GTAAGTGCTGAACTCATCCA+AGG 0.609847 5.1:+64900527 MS.gene29657:CDS
ATTCTCACCTGGATGAACAA+AGG 0.616516 5.1:-64900726 None:intergenic
TGGATGAACAAAGGGACACT+CGG 0.617153 5.1:-64900717 None:intergenic
GGTTCATCATCTCCCAAGAG+TGG 0.617657 5.1:+64901115 MS.gene29657:CDS
GGTGTTGAAACAGTTGACAT+AGG 0.621294 5.1:-64901073 None:intergenic
ATTCGTTGTCCAAATCGCGT+AGG 0.621353 5.1:+64900474 MS.gene29657:CDS
GCCCTGTGTATGCTTCCACT+GGG 0.623417 5.1:+64900963 MS.gene29657:CDS
TCAGCATGTTGGGATGCAGT+TGG 0.624317 5.1:-64901868 None:intergenic
CTGATGCTAAGAGGTCATCA+AGG 0.625709 5.1:-64901381 None:intergenic
TGAATCAAATCCATATGGTG+AGG 0.627563 5.1:-64901584 None:intergenic
GCTGAATAGGACTTTGGTGA+AGG 0.628923 5.1:-64900995 None:intergenic
TATACACCGGAATTCTCAGA+TGG 0.629638 5.1:-64901931 None:intergenic
CCCACTGGGAAACTCGATTG+GGG 0.632471 5.1:+64901772 MS.gene29657:CDS
TACATCTGCTCCACCCATGG+TGG 0.632978 5.1:-64902009 None:intergenic
ATGCAAGGAGGAGAGACCCA+AGG 0.635278 5.1:+64900747 MS.gene29657:CDS
GGAGATGATGAACCTGCCAA+GGG 0.637245 5.1:-64901106 None:intergenic
CCTTTGCGAAACTCTGGGCA+GGG 0.637831 5.1:-64900791 None:intergenic
GAACCTGCCAAGGGAGACAT+GGG 0.638207 5.1:-64901097 None:intergenic
AGCCAAAGTTTCATTGACCG+TGG 0.638346 5.1:+64901667 MS.gene29657:CDS
TATATGGTGCCGAGAATATG+CGG 0.638645 5.1:+64901950 MS.gene29657:CDS
TGAGGGCTTCCTCACTGGAG+AGG 0.638650 5.1:-64901566 None:intergenic
TTCATCAGACTGTGCCATGG+AGG 0.642039 5.1:+64900037 MS.gene29657:CDS
AACAGCACAATGAAGAGCAG+TGG 0.643629 5.1:-64900333 None:intergenic
TAAGTGCTGAACTCATCCAA+GGG 0.645605 5.1:+64900528 MS.gene29657:CDS
CCCCAATCGAGTTTCCCAGT+GGG 0.652420 5.1:-64901772 None:intergenic
GCTGCAACGATGGTGGAGTG+AGG 0.652628 5.1:-64901162 None:intergenic
ACAGGGAAGATTGATGTCAA+CGG 0.653698 5.1:+64900290 MS.gene29657:CDS
CCCAATCGAGTTTCCCAGTG+GGG 0.653880 5.1:-64901771 None:intergenic
TGTTGCTGCTGCTGACGACG+AGG 0.659234 5.1:-64901262 None:intergenic
ATGCGCCAAAACATGAACAT+GGG 0.661793 5.1:+64901493 MS.gene29657:CDS
CCAATCGAGTTTCCCAGTGG+GGG 0.662085 5.1:-64901770 None:intergenic
CTCCCAAGAGTGGAAACATG+TGG 0.663242 5.1:+64901125 MS.gene29657:CDS
AAGGGATCTCGATCTTGAGA+TGG 0.663328 5.1:+64901219 MS.gene29657:CDS
GCTGTTACGGAAAGATGGGG+AGG 0.665128 5.1:-64901323 None:intergenic
ACCCCAATCGAGTTTCCCAG+TGG 0.665168 5.1:-64901773 None:intergenic
AAGGCGGAGAAAGTCCAAGA+TGG 0.665195 5.1:-64901702 None:intergenic
GATTCTTGCGAGTATGCACA+TGG 0.667439 5.1:+64900830 MS.gene29657:CDS
ACCCAGTGGAAGCATACACA+GGG 0.670101 5.1:-64900964 None:intergenic
TTCGCTGTTACGGAAAGATG+GGG 0.672071 5.1:-64901326 None:intergenic
GTGACGAGCTGAACAAGCTG+AGG 0.679618 5.1:+64901803 MS.gene29657:CDS
GATGAGGAGCTAAGAGACAA+CGG 0.680167 5.1:-64901046 None:intergenic
CTGCAGGAAGAGTTGGAAGG+CGG 0.680425 5.1:-64901718 None:intergenic
GATGGTGAGTTGCAGCACCA+CGG 0.682458 5.1:-64901684 None:intergenic
AGTTGACATAGGCAAAGATG+AGG 0.688585 5.1:-64901062 None:intergenic
ACCCTGCAGGAAGAGTTGGA+AGG 0.691550 5.1:-64901721 None:intergenic
ATTCTCGGCACCATATACAC+CGG 0.692075 5.1:-64901944 None:intergenic
TCGAGTATATTCTTTCGACA+GGG 0.693087 5.1:+64900273 MS.gene29657:CDS
TTGATGGATAACTTGCGCGA+AGG 0.700054 5.1:-64901531 None:intergenic
AAGTGCTGAACTCATCCAAG+GGG 0.716976 5.1:+64900529 MS.gene29657:CDS
ATATGCCTTCCTCTCCAGTG+AGG 0.717918 5.1:+64901557 MS.gene29657:CDS
TGAAGGCATAGCTGACCCAG+TGG 0.718756 5.1:-64900978 None:intergenic
TCGTTGCCCGACATAAACAA+CGG 0.735153 5.1:+64900617 MS.gene29657:CDS
CCTGCCAAGGGAGACATGGG+TGG 0.744203 5.1:-64901094 None:intergenic
ATCCAGGTGAGAATGCAAGG+AGG 0.764804 5.1:+64900735 MS.gene29657:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AATTTACTATCTCAACTACA+TGG + chr5.1:64901412-64901431 MS.gene29657:CDS 25.0%
! ATTTACTATCTCAACTACAT+GGG + chr5.1:64901413-64901432 MS.gene29657:CDS 25.0%
! TGTAGTTGAGATAGTAAATT+AGG - chr5.1:64901412-64901431 None:intergenic 25.0%
!! TCTTTTGGATTCAGAAATAA+TGG + chr5.1:64901835-64901854 MS.gene29657:CDS 25.0%
ATATACACCGTTGTTTATGT+CGG - chr5.1:64900627-64900646 None:intergenic 30.0%
ATTTCTGAATCCAAAAGAAG+CGG - chr5.1:64901833-64901852 None:intergenic 30.0%
CCTTTCTCATTGAAAAAAGA+AGG + chr5.1:64900563-64900582 MS.gene29657:CDS 30.0%
TATATGGATCAGATGAGTTT+AGG + chr5.1:64900642-64900661 MS.gene29657:CDS 30.0%
TTCTCATTGAAAAAAGAAGG+TGG + chr5.1:64900566-64900585 MS.gene29657:CDS 30.0%
! ATTTGAATGAAGAAGGCTTT+TGG + chr5.1:64900162-64900181 MS.gene29657:CDS 30.0%
! TTGGGTTAATTCATTGGTTA+AGG + chr5.1:64901903-64901922 MS.gene29657:CDS 30.0%
! TTTTGGTATGGTAGAAGAAT+TGG + chr5.1:64900179-64900198 MS.gene29657:CDS 30.0%
!!! CCTTCTTTTTTCAATGAGAA+AGG - chr5.1:64900566-64900585 None:intergenic 30.0%
AACAAGGAAGCAATCATAAG+AGG - chr5.1:64900236-64900255 None:intergenic 35.0%
AAGAATTGGATCGAAGAAGA+TGG + chr5.1:64900193-64900212 MS.gene29657:CDS 35.0%
AAGAGAGAAGTAGATGAGAA+GGG + chr5.1:64900134-64900153 MS.gene29657:CDS 35.0%
AGAAGATGGAATCTGAAAAG+AGG + chr5.1:64900207-64900226 MS.gene29657:CDS 35.0%
AGACAATTCAAGCAAGATTG+AGG - chr5.1:64900090-64900109 None:intergenic 35.0%
ATGGAGGATAAGCTTCAAAA+GGG + chr5.1:64900053-64900072 MS.gene29657:CDS 35.0%
CTTATGATTGCTTCCTTGTT+TGG + chr5.1:64900236-64900255 MS.gene29657:CDS 35.0%
GAATCAAATCCATATGGTGA+GGG - chr5.1:64901586-64901605 None:intergenic 35.0%
GACATAAACAACGGTGTATA+TGG + chr5.1:64900626-64900645 MS.gene29657:CDS 35.0%
GCTGATGAATCAAATCCATA+TGG - chr5.1:64901592-64901611 None:intergenic 35.0%
GGTTTGGATTTGAATGAAGA+AGG + chr5.1:64900155-64900174 MS.gene29657:CDS 35.0%
TATACACCGTTGTTTATGTC+GGG - chr5.1:64900626-64900645 None:intergenic 35.0%
TCGAGTATATTCTTTCGACA+GGG + chr5.1:64900273-64900292 MS.gene29657:CDS 35.0%
TGAATCAAATCCATATGGTG+AGG - chr5.1:64901587-64901606 None:intergenic 35.0%
TGTCTCTTGGGTTAATTCAT+TGG + chr5.1:64901897-64901916 MS.gene29657:CDS 35.0%
TTCTGTTGAATTCGCTGTTA+CGG - chr5.1:64901339-64901358 None:intergenic 35.0%
! AATGAAGAAGGCTTTTGGTA+TGG + chr5.1:64900167-64900186 MS.gene29657:CDS 35.0%
! CGATTTGGACAACGAATTAA+AGG - chr5.1:64900471-64900490 None:intergenic 35.0%
! GTTTAGGATGTACAGTTTCA+AGG + chr5.1:64900658-64900677 MS.gene29657:CDS 35.0%
AAACTCGATTGGGGTGTAAA+CGG + chr5.1:64901781-64901800 MS.gene29657:CDS 40.0%
AAGAGGTCATCAAGGTTAGT+TGG - chr5.1:64901376-64901395 None:intergenic 40.0%
AATTCGCTGTTACGGAAAGA+TGG - chr5.1:64901331-64901350 None:intergenic 40.0%
ACAGGGAAGATTGATGTCAA+CGG + chr5.1:64900290-64900309 MS.gene29657:CDS 40.0%
AGAAGTAGATGAGAAGGGTT+TGG + chr5.1:64900139-64900158 MS.gene29657:CDS 40.0%
AGTTGACATAGGCAAAGATG+AGG - chr5.1:64901065-64901084 None:intergenic 40.0%
ATGCGCCAAAACATGAACAT+GGG + chr5.1:64901493-64901512 MS.gene29657:CDS 40.0%
ATTCGCTGTTACGGAAAGAT+GGG - chr5.1:64901330-64901349 None:intergenic 40.0%
ATTCTCACCTGGATGAACAA+AGG - chr5.1:64900729-64900748 None:intergenic 40.0%
ATTGATGTCAACGGAGTTTG+TGG + chr5.1:64900299-64900318 MS.gene29657:CDS 40.0%
CAAGAGAGAAGTAGATGAGA+AGG + chr5.1:64900133-64900152 MS.gene29657:CDS 40.0%
CATGGAGGATAAGCTTCAAA+AGG + chr5.1:64900052-64900071 MS.gene29657:CDS 40.0%
GAATTAACCCAAGAGACATC+AGG - chr5.1:64901895-64901914 None:intergenic 40.0%
GATCTTGAGATGGAATTGCT+CGG + chr5.1:64901229-64901248 MS.gene29657:CDS 40.0%
GATGTTCCATCTGAGAATTC+CGG + chr5.1:64901925-64901944 MS.gene29657:CDS 40.0%
GTCAATTCCACTAGCTGAAT+AGG - chr5.1:64901011-64901030 None:intergenic 40.0%
GTCGAGTATATTCTTTCGAC+AGG + chr5.1:64900272-64900291 MS.gene29657:CDS 40.0%
TATACACCGGAATTCTCAGA+TGG - chr5.1:64901934-64901953 None:intergenic 40.0%
TCGGGCAACGATATATCAAT+AGG - chr5.1:64900608-64900627 None:intergenic 40.0%
TCTGAGAATTCCGGTGTATA+TGG + chr5.1:64901934-64901953 MS.gene29657:CDS 40.0%
TGATGCTAGTGGAAACAAAC+CGG + chr5.1:64900427-64900446 MS.gene29657:CDS 40.0%
TTCTCACCTGGATGAACAAA+GGG - chr5.1:64900728-64900747 None:intergenic 40.0%
TTGGACAACGAATTAAAGGC+TGG - chr5.1:64900467-64900486 None:intergenic 40.0%
! CACTCAAAGCACTCTTCAAA+CGG - chr5.1:64901198-64901217 None:intergenic 40.0%
! GAGGAAGGCATATTGTTTGA+TGG - chr5.1:64901550-64901569 None:intergenic 40.0%
! GGTGTTGAAACAGTTGACAT+AGG - chr5.1:64901076-64901095 None:intergenic 40.0%
! TATATGGTGCCGAGAATATG+CGG + chr5.1:64901950-64901969 MS.gene29657:CDS 40.0%
! TTTGGCCCATGTTCATGTTT+TGG - chr5.1:64901501-64901520 None:intergenic 40.0%
!! AGCTGTAAGGGTATTTCCTT+GGG - chr5.1:64900766-64900785 None:intergenic 40.0%
!! GTGTTGGAGATGTTTTTGAG+AGG + chr5.1:64900500-64900519 MS.gene29657:CDS 40.0%
!! TAAGTGCTGAACTCATCCAA+GGG + chr5.1:64900528-64900547 MS.gene29657:CDS 40.0%
!!! CTTTTGAAGCTTATCCTCCA+TGG - chr5.1:64900054-64900073 None:intergenic 40.0%
AACAGCACAATGAAGAGCAG+TGG - chr5.1:64900336-64900355 None:intergenic 45.0%
AAGACAATCAGCATCTGCAC+CGG - chr5.1:64900408-64900427 None:intergenic 45.0%
AAGACCCTTTGCGAAACTCT+GGG - chr5.1:64900799-64900818 None:intergenic 45.0%
AAGGGATCTCGATCTTGAGA+TGG + chr5.1:64901219-64901238 MS.gene29657:CDS 45.0%
ACTCGCAAGAATCTCCTTTC+TGG - chr5.1:64900823-64900842 None:intergenic 45.0%
AGCCAAAGTTTCATTGACCG+TGG + chr5.1:64901667-64901686 MS.gene29657:CDS 45.0%
ATACCGAACAAGGCTTTGCA+AGG + chr5.1:64900883-64900902 MS.gene29657:CDS 45.0%
ATGAAGAGCAGTGGCCATAT+CGG - chr5.1:64900327-64900346 None:intergenic 45.0%
ATTCGTTGTCCAAATCGCGT+AGG + chr5.1:64900474-64900493 MS.gene29657:CDS 45.0%
ATTCTCGGCACCATATACAC+CGG - chr5.1:64901947-64901966 None:intergenic 45.0%
CACCACGGTCAATGAAACTT+TGG - chr5.1:64901672-64901691 None:intergenic 45.0%
CACTCTAGTGCTTCCAAACA+AGG - chr5.1:64900252-64900271 None:intergenic 45.0%
CAGCTGCAGTGATGAATTCT+AGG + chr5.1:64901620-64901639 MS.gene29657:CDS 45.0%
CCAAAGTCCTATTCAGCTAG+TGG + chr5.1:64901001-64901020 MS.gene29657:CDS 45.0%
CCACTAGCTGAATAGGACTT+TGG - chr5.1:64901004-64901023 None:intergenic 45.0%
CTGATGCTAAGAGGTCATCA+AGG - chr5.1:64901384-64901403 None:intergenic 45.0%
GATGAGGAGCTAAGAGACAA+CGG - chr5.1:64901049-64901068 None:intergenic 45.0%
GATGCGCCAAAACATGAACA+TGG + chr5.1:64901492-64901511 MS.gene29657:CDS 45.0%
GATTCTTGCGAGTATGCACA+TGG + chr5.1:64900830-64900849 MS.gene29657:CDS 45.0%
GCTGAATAGGACTTTGGTGA+AGG - chr5.1:64900998-64901017 None:intergenic 45.0%
GCTGATTGTCTTGATGCTAG+TGG + chr5.1:64900416-64900435 MS.gene29657:CDS 45.0%
GGAGAATGCATCTGTTGTGT+GGG - chr5.1:64901460-64901479 None:intergenic 45.0%
TAGGATCAGCTGATGCTAAG+AGG - chr5.1:64901393-64901412 None:intergenic 45.0%
TCGTTGCCCGACATAAACAA+CGG + chr5.1:64900617-64900636 MS.gene29657:CDS 45.0%
TGCCACATGTTTCCACTCTT+GGG - chr5.1:64901130-64901149 None:intergenic 45.0%
TGGAGAATGCATCTGTTGTG+TGG - chr5.1:64901461-64901480 None:intergenic 45.0%
TGGATGAACAAAGGGACACT+CGG - chr5.1:64900720-64900739 None:intergenic 45.0%
TTCATCCAGGTGAGAATGCA+AGG + chr5.1:64900732-64900751 MS.gene29657:CDS 45.0%
TTCGCTGTTACGGAAAGATG+GGG - chr5.1:64901329-64901348 None:intergenic 45.0%
TTCTTCATCAGACTGTGCCA+TGG + chr5.1:64900034-64900053 MS.gene29657:CDS 45.0%
! CTGAGGAAATCCGCTTCTTT+TGG + chr5.1:64901820-64901839 MS.gene29657:CDS 45.0%
! TTGATGGATAACTTGCGCGA+AGG - chr5.1:64901534-64901553 None:intergenic 45.0%
!! AAGCCTTGTTCGGTATTGTG+CGG - chr5.1:64900879-64900898 None:intergenic 45.0%
!! AAGTGCTGAACTCATCCAAG+GGG + chr5.1:64900529-64900548 MS.gene29657:CDS 45.0%
!! ATCTGTTGTGTGGGTGTTGA+TGG - chr5.1:64901451-64901470 None:intergenic 45.0%
!! CAGCTGTAAGGGTATTTCCT+TGG - chr5.1:64900767-64900786 None:intergenic 45.0%
!! CTTGTTTGGAAGCACTAGAG+TGG + chr5.1:64900250-64900269 MS.gene29657:CDS 45.0%
!! GAAGAGTGCTTTGAGTGCAA+GGG + chr5.1:64901201-64901220 MS.gene29657:CDS 45.0%
!! GGAGATGTTTTTGAGAGGTG+AGG + chr5.1:64900505-64900524 MS.gene29657:CDS 45.0%
!! GTAAGTGCTGAACTCATCCA+AGG + chr5.1:64900527-64900546 MS.gene29657:CDS 45.0%
!! TGAAGAGTGCTTTGAGTGCA+AGG + chr5.1:64901200-64901219 MS.gene29657:CDS 45.0%
!!! CACATGGTGTTTTCGAGTCA+TGG + chr5.1:64900846-64900865 MS.gene29657:CDS 45.0%
AAGGCGGAGAAAGTCCAAGA+TGG - chr5.1:64901705-64901724 None:intergenic 50.0%
AGACATCAGGCTCAGCATGT+TGG - chr5.1:64901882-64901901 None:intergenic 50.0%
ATATGCCTTCCTCTCCAGTG+AGG + chr5.1:64901557-64901576 MS.gene29657:CDS 50.0%
ATCCAGGTGAGAATGCAAGG+AGG + chr5.1:64900735-64900754 MS.gene29657:CDS 50.0%
ATCCCGCACAATACCGAACA+AGG + chr5.1:64900873-64900892 MS.gene29657:CDS 50.0%
ATGCTGAGCCTGATGTCTCT+TGG + chr5.1:64901884-64901903 MS.gene29657:CDS 50.0%
CAACACCTTCCTACGCGATT+TGG - chr5.1:64900486-64900505 None:intergenic 50.0%
CAAGACCCTTTGCGAAACTC+TGG - chr5.1:64900800-64900819 None:intergenic 50.0%
CACTCTTCAAACGGCTACCT+GGG - chr5.1:64901189-64901208 None:intergenic 50.0%
CGGAGTTTGTGGTTCCGATA+TGG + chr5.1:64900310-64900329 MS.gene29657:CDS 50.0%
CTCCCAAGAGTGGAAACATG+TGG + chr5.1:64901125-64901144 MS.gene29657:CDS 50.0%
CTGCCACATGTTTCCACTCT+TGG - chr5.1:64901131-64901150 None:intergenic 50.0%
GACATCAGGCTCAGCATGTT+GGG - chr5.1:64901881-64901900 None:intergenic 50.0%
GAGTGTCCCTTTGTTCATCC+AGG + chr5.1:64900719-64900738 MS.gene29657:CDS 50.0%
GGAGATGATGAACCTGCCAA+GGG - chr5.1:64901109-64901128 None:intergenic 50.0%
GGAGCAGATGTACAAAGAGC+AGG + chr5.1:64902020-64902039 MS.gene29657:CDS 50.0%
GGTTCATCATCTCCCAAGAG+TGG + chr5.1:64901115-64901134 MS.gene29657:CDS 50.0%
GTACAAAGAGCAGGAGCAGA+TGG + chr5.1:64902029-64902048 MS.gene29657:CDS 50.0%
GTCAAGCTCTTGCTTGATGC+CGG + chr5.1:64900386-64900405 MS.gene29657:CDS 50.0%
GTTGTCCAAATCGCGTAGGA+AGG + chr5.1:64900478-64900497 MS.gene29657:CDS 50.0%
TCAGCATGTTGGGATGCAGT+TGG - chr5.1:64901871-64901890 None:intergenic 50.0%
TGAACTCATCCAAGGGGAGA+TGG + chr5.1:64900535-64900554 MS.gene29657:CDS 50.0%
TGAGATGGAATTGCTCGGTC+TGG + chr5.1:64901234-64901253 MS.gene29657:CDS 50.0%
TGCTGAGCCTGATGTCTCTT+GGG + chr5.1:64901885-64901904 MS.gene29657:CDS 50.0%
TTCATCAGACTGTGCCATGG+AGG + chr5.1:64900037-64900056 MS.gene29657:CDS 50.0%
TTGTACATCTGCTCCACCCA+TGG - chr5.1:64902015-64902034 None:intergenic 50.0%
! ACCCAGTGGAAGCATACACA+GGG - chr5.1:64900967-64900986 None:intergenic 50.0%
! ATGGATAACTTGCGCGAAGG+TGG - chr5.1:64901531-64901550 None:intergenic 50.0%
! CAAATCGCGTAGGAAGGTGT+TGG + chr5.1:64900484-64900503 MS.gene29657:CDS 50.0%
! CGCGAAGGTGGTTCATGTTT+TGG - chr5.1:64901519-64901538 None:intergenic 50.0%
! CTTCATTGTGCTGTTGCTGG+TGG + chr5.1:64900341-64900360 MS.gene29657:CDS 50.0%
! GCTCTTCATTGTGCTGTTGC+TGG + chr5.1:64900338-64900357 MS.gene29657:CDS 50.0%
!! AGCCTTGTTCGGTATTGTGC+GGG - chr5.1:64900878-64900897 None:intergenic 50.0%
!! CGTCCTTGCAAAGCCTTGTT+CGG - chr5.1:64900889-64900908 None:intergenic 50.0%
!! TGTGGGTGTTGATGGTTGCA+TGG - chr5.1:64901443-64901462 None:intergenic 50.0%
!!! TGGTTCTGAGTTTTCGCTCG+AGG + chr5.1:64900361-64900380 MS.gene29657:CDS 50.0%
AACACCACCCATGTCTCCCT+TGG + chr5.1:64901090-64901109 MS.gene29657:CDS 55.0%
ACCCCAATCGAGTTTCCCAG+TGG - chr5.1:64901776-64901795 None:intergenic 55.0%
ACCCTGCAGGAAGAGTTGGA+AGG - chr5.1:64901724-64901743 None:intergenic 55.0%
AGGCTTTGCAAGGACGAGAC+TGG + chr5.1:64900893-64900912 MS.gene29657:CDS 55.0%
ATACACAGGGCGCAGCTCTT+CGG - chr5.1:64900954-64900973 None:intergenic 55.0%
ATGCAAGGAGGAGAGACCCA+AGG + chr5.1:64900747-64900766 MS.gene29657:CDS 55.0%
CAAGGTGAAGCCATGCTCGA+GGG + chr5.1:64900676-64900695 MS.gene29657:CDS 55.0%
CATCACTGCAGCTGCTACTG+CGG - chr5.1:64901614-64901633 None:intergenic 55.0%
CCAATCGAGTTTCCCAGTGG+GGG - chr5.1:64901773-64901792 None:intergenic 55.0%
CCCAATCGAGTTTCCCAGTG+GGG - chr5.1:64901774-64901793 None:intergenic 55.0%
CCCACTGGGAAACTCGATTG+GGG + chr5.1:64901772-64901791 MS.gene29657:CDS 55.0%
CCCCAATCGAGTTTCCCAGT+GGG - chr5.1:64901775-64901794 None:intergenic 55.0%
CCCCACTGGGAAACTCGATT+GGG + chr5.1:64901771-64901790 MS.gene29657:CDS 55.0%
CCTGCCCAGAGTTTCGCAAA+GGG + chr5.1:64900792-64900811 MS.gene29657:CDS 55.0%
CCTTTGCGAAACTCTGGGCA+GGG - chr5.1:64900794-64900813 None:intergenic 55.0%
CGAGGGCTTACTCTCACGAT+TGG + chr5.1:64900693-64900712 MS.gene29657:CDS 55.0%
CGCAAAGGGTCTTGCCAGAA+AGG + chr5.1:64900806-64900825 MS.gene29657:CDS 55.0%
CTCCTCCTTGCATTCTCACC+TGG - chr5.1:64900740-64900759 None:intergenic 55.0%
CTGCAGCTGCCGCATATTCT+CGG - chr5.1:64901962-64901981 None:intergenic 55.0%
CTGCAGGAAGAGTTGGAAGG+CGG - chr5.1:64901721-64901740 None:intergenic 55.0%
GAACCTGCCAAGGGAGACAT+GGG - chr5.1:64901100-64901119 None:intergenic 55.0%
GATGGTGAGTTGCAGCACCA+CGG - chr5.1:64901687-64901706 None:intergenic 55.0%
GCACTCTTCAAACGGCTACC+TGG - chr5.1:64901190-64901209 None:intergenic 55.0%
GCCCTGTGTATGCTTCCACT+GGG + chr5.1:64900963-64900982 MS.gene29657:CDS 55.0%
GCCTTCCAACTCTTCCTGCA+GGG + chr5.1:64901720-64901739 MS.gene29657:CDS 55.0%
GCTGGCGCAATCAGATCAAC+CGG - chr5.1:64900449-64900468 None:intergenic 55.0%
GCTGTTACGGAAAGATGGGG+AGG - chr5.1:64901326-64901345 None:intergenic 55.0%
GGAACCCCAATCTGAAAGGC+CGG - chr5.1:64901752-64901771 None:intergenic 55.0%
GGCAGGGAACACAGCTGTAA+GGG - chr5.1:64900778-64900797 None:intergenic 55.0%
GGGAGATGATGAACCTGCCA+AGG - chr5.1:64901110-64901129 None:intergenic 55.0%
GTCGTCCGGCCTTTCAGATT+GGG + chr5.1:64901744-64901763 MS.gene29657:CDS 55.0%
GTGACGAGCTGAACAAGCTG+AGG + chr5.1:64901803-64901822 MS.gene29657:CDS 55.0%
GTGAGGAAGCCCTCACCATA+TGG + chr5.1:64901574-64901593 MS.gene29657:CDS 55.0%
TACATCTGCTCCACCCATGG+TGG - chr5.1:64902012-64902031 None:intergenic 55.0%
TATGGTGAGGGCTTCCTCAC+TGG - chr5.1:64901574-64901593 None:intergenic 55.0%
TCAAGGTGAAGCCATGCTCG+AGG + chr5.1:64900675-64900694 MS.gene29657:CDS 55.0%
TCGAGACGTGCTTCCACCAT+GGG + chr5.1:64901996-64902015 MS.gene29657:CDS 55.0%
TCGTCCGGCCTTTCAGATTG+GGG + chr5.1:64901745-64901764 MS.gene29657:CDS 55.0%
TGAACCTGCCAAGGGAGACA+TGG - chr5.1:64901101-64901120 None:intergenic 55.0%
TGAGAGTAAGCCCTCGAGCA+TGG - chr5.1:64900689-64900708 None:intergenic 55.0%
TGGCGCATCTGCATTGCACT+TGG - chr5.1:64901481-64901500 None:intergenic 55.0%
TGGGGGAACCCCAATCTGAA+AGG - chr5.1:64901756-64901775 None:intergenic 55.0%
TGTCGTCCGGCCTTTCAGAT+TGG + chr5.1:64901743-64901762 MS.gene29657:CDS 55.0%
! GACCCAGTGGAAGCATACAC+AGG - chr5.1:64900968-64900987 None:intergenic 55.0%
! GGTGCTGCAACTCACCATCT+TGG + chr5.1:64901688-64901707 MS.gene29657:CDS 55.0%
! TGAAGGCATAGCTGACCCAG+TGG - chr5.1:64900981-64901000 None:intergenic 55.0%
! TTGGCTGCGCTGCTTTGCAA+AGG - chr5.1:64901653-64901672 None:intergenic 55.0%
AGACGTGCTTCCACCATGGG+TGG + chr5.1:64901999-64902018 MS.gene29657:CDS 60.0%
CAGATTGGGGTTCCCCCACT+GGG + chr5.1:64901758-64901777 MS.gene29657:CDS 60.0%
CCCCCACTGGGAAACTCGAT+TGG + chr5.1:64901770-64901789 MS.gene29657:CDS 60.0%
CCCTGCCCAGAGTTTCGCAA+AGG + chr5.1:64900791-64900810 MS.gene29657:CDS 60.0%
CCCTTTGCGAAACTCTGGGC+AGG - chr5.1:64900795-64900814 None:intergenic 60.0%
CGACACCCTGCAGGAAGAGT+TGG - chr5.1:64901728-64901747 None:intergenic 60.0%
CGCCCTGTGTATGCTTCCAC+TGG + chr5.1:64900962-64900981 MS.gene29657:CDS 60.0%
CGCCTTCCAACTCTTCCTGC+AGG + chr5.1:64901719-64901738 MS.gene29657:CDS 60.0%
CTACCTGGGAGCTGCAACGA+TGG - chr5.1:64901175-64901194 None:intergenic 60.0%
GGCTTCCTCACTGGAGAGGA+AGG - chr5.1:64901565-64901584 None:intergenic 60.0%
GGGCAGGGAACACAGCTGTA+AGG - chr5.1:64900779-64900798 None:intergenic 60.0%
GTCGAGACGTGCTTCCACCA+TGG + chr5.1:64901995-64902014 MS.gene29657:CDS 60.0%
TACACAGGGCGCAGCTCTTC+GGG - chr5.1:64900953-64900972 None:intergenic 60.0%
TCAGATTGGGGTTCCCCCAC+TGG + chr5.1:64901757-64901776 MS.gene29657:CDS 60.0%
TGAGGGCTTCCTCACTGGAG+AGG - chr5.1:64901569-64901588 None:intergenic 60.0%
TGTTGCTGCTGCTGACGACG+AGG - chr5.1:64901265-64901284 None:intergenic 60.0%
!! AAGGAGCGTCCATCTCCCCT+TGG - chr5.1:64900547-64900566 None:intergenic 60.0%
!! GCTGCAACGATGGTGGAGTG+AGG - chr5.1:64901165-64901184 None:intergenic 60.0%
!! TCTTCCTGCAGGGTGTCGTC+CGG + chr5.1:64901730-64901749 MS.gene29657:CDS 60.0%
!! TGGGATGCAGTTGGTGCTGC+TGG - chr5.1:64901862-64901881 None:intergenic 60.0%
CCACCATCGTTGCAGCTCCC+AGG + chr5.1:64901169-64901188 MS.gene29657:CDS 65.0%
CCACCCATGTCTCCCTTGGC+AGG + chr5.1:64901094-64901113 MS.gene29657:CDS 65.0%
CCTGCCAAGGGAGACATGGG+TGG - chr5.1:64901097-64901116 None:intergenic 65.0%
CCTGGGAGCTGCAACGATGG+TGG - chr5.1:64901172-64901191 None:intergenic 65.0%
AAGGCCGGACGACACCCTGC+AGG - chr5.1:64901737-64901756 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 64900008 64902059 64900008 ID=MS.gene29657
chr5.1 mRNA 64900008 64902059 64900008 ID=MS.gene29657.t1;Parent=MS.gene29657
chr5.1 exon 64900008 64902059 64900008 ID=MS.gene29657.t1.exon1;Parent=MS.gene29657.t1
chr5.1 CDS 64900008 64902059 64900008 ID=cds.MS.gene29657.t1;Parent=MS.gene29657.t1
Gene Sequence

>MS.gene29657

ATGTGCAGTGGTTCAAAGAGTAAACTTTCTTCATCAGACTGTGCCATGGAGGATAAGCTTCAAAAGGGTGTTCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAGAGAGAAGTAGATGAGAAGGGTTTGGATTTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGAATCTGAAAAGAGGACTCCTCTTATGATTGCTTCCTTGTTTGGAAGCACTAGAGTGGTCGAGTATATTCTTTCGACAGGGAAGATTGATGTCAACGGAGTTTGTGGTTCCGATATGGCCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAGTTTTCGCTCGAGGTTGTCAAGCTCTTGCTTGATGCCGGTGCAGATGCTGATTGTCTTGATGCTAGTGGAAACAAACCGGTTGATCTGATTGCGCCAGCCTTTAATTCGTTGTCCAAATCGCGTAGGAAGGTGTTGGAGATGTTTTTGAGAGGTGAGGTAAGTGCTGAACTCATCCAAGGGGAGATGGACGCTCCTTTCTCATTGAAAAAAGAAGGTGGTGATAAGAAAGAGTTTCCTATTGATATATCGTTGCCCGACATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCTCACGATTGGACCGAGTGTCCCTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGTCTTGCCAGAAAGGAGATTCTTGCGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCCGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTTGCTCACAGACCCGAAGAGCTGCGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAGTCCTATTCAGCTAGTGGAATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCTCATCTTTGCCTATGTCAACTGTTTCAACACCACCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACATGTGGCAGAACAAATTAAACCTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGTTTGAAGAGTGCTTTGAGTGCAAGGGATCTCGATCTTGAGATGGAATTGCTCGGTCTGGATAGTCCTCGTCGTCAGCAGCAGCAACAACAACAACAACAATTGATTGAAGAGATTGCTAGAATCTCCTCCCCATCTTTCCGTAACAGCGAATTCAACAGAATTGCTGATTTGAATCCAACTAACCTTGATGACCTCTTAGCATCAGCTGATCCTAATTTACTATCTCAACTACATGGGCTTTCCATGCAACCATCAACACCCACACAACAGATGCATTCTCCAAGTGCAATGCAGATGCGCCAAAACATGAACATGGGCCAAAACATGAACCACCTTCGCGCAAGTTATCCATCAAACAATATGCCTTCCTCTCCAGTGAGGAAGCCCTCACCATATGGATTTGATTCATCAGCCGCAGTAGCAGCTGCAGTGATGAATTCTAGGTCTGCTGCCTTTGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGTGGTGCTGCAACTCACCATCTTGGACTTTCTCCGCCTTCCAACTCTTCCTGCAGGGTGTCGTCCGGCCTTTCAGATTGGGGTTCCCCCACTGGGAAACTCGATTGGGGTGTAAACGGTGACGAGCTGAACAAGCTGAGGAAATCCGCTTCTTTTGGATTCAGAAATAATGGACCAGCAGCACCAACTGCATCCCAACATGCTGAGCCTGATGTCTCTTGGGTTAATTCATTGGTTAAGGATGTTCCATCTGAGAATTCCGGTGTATATGGTGCCGAGAATATGCGGCAGCTGCAGCAATATGATCTGAGTCGAGACGTGCTTCCACCATGGGTGGAGCAGATGTACAAAGAGCAGGAGCAGATGGTAGCATGA
Protein sequence

>MS.gene29657.t1

MCSGSKSKLSSSDCAMEDKLQKGVHNSSILLELSASDDFDAFKREVDEKGLDLNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTRVVEYILSTGKIDVNGVCGSDMATALHCAVAGGSEFSLEVVKLLLDAGADADCLDASGNKPVDLIAPAFNSLSKSRRKVLEMFLRGEVSAELIQGEMDAPFSLKKEGGDKKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSASGIDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQQQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMHSPSAMQMRQNMNMGQNMNHLRASYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNSSCRVSSGLSDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGPAAPTASQHAEPDVSWVNSLVKDVPSENSGVYGAENMRQLQQYDLSRDVLPPWVEQMYKEQEQMVA