Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010006.t1 | AES98394.1 | 82.9 | 240 | 31 | 2 | 2 | 231 | 1 | 240 | 9.10E-110 | 406.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010006.t1 | Q9FMM4 | 37.7 | 69 | 41 | 2 | 160 | 227 | 612 | 679 | 4.1e-10 | 66.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010006.t1 | G7KD92 | 82.9 | 240 | 31 | 2 | 2 | 231 | 1 | 240 | 6.6e-110 | 406.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene017995 | MS.gene010006 | PPI |
MS.gene93489 | MS.gene010006 | PPI |
MS.gene015160 | MS.gene010006 | PPI |
MS.gene010343 | MS.gene010006 | PPI |
MS.gene010006 | MS.gene28214 | PPI |
MS.gene010006 | MS.gene93488 | PPI |
MS.gene055988 | MS.gene010006 | PPI |
MS.gene010006 | MS.gene017970 | PPI |
MS.gene010006 | MS.gene94530 | PPI |
MS.gene28215 | MS.gene010006 | PPI |
MS.gene041075 | MS.gene010006 | PPI |
MS.gene79416 | MS.gene010006 | PPI |
MS.gene94534 | MS.gene010006 | PPI |
MS.gene28213 | MS.gene010006 | PPI |
MS.gene94527 | MS.gene010006 | PPI |
MS.gene94533 | MS.gene010006 | PPI |
MS.gene94532 | MS.gene010006 | PPI |
MS.gene97792 | MS.gene010006 | PPI |
MS.gene047623 | MS.gene010006 | PPI |
MS.gene010006 | MS.gene94537 | PPI |
MS.gene010006 | MS.gene52667 | PPI |
MS.gene79417 | MS.gene010006 | PPI |
MS.gene93487 | MS.gene010006 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010006.t1 | MTR_5g068000 | 82.573 | 241 | 32 | 2 | 2 | 232 | 1 | 241 | 2.03e-141 | 395 |
MS.gene010006.t1 | MTR_5g016960 | 50.769 | 65 | 28 | 3 | 168 | 232 | 538 | 598 | 4.16e-12 | 65.5 |
MS.gene010006.t1 | MTR_3g025940 | 39.189 | 74 | 43 | 2 | 160 | 232 | 375 | 447 | 1.68e-11 | 63.5 |
MS.gene010006.t1 | MTR_5g016920 | 50.980 | 51 | 24 | 1 | 182 | 232 | 98 | 147 | 6.50e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene010006.t1 | AT3G15070 | 45.161 | 62 | 33 | 1 | 168 | 229 | 412 | 472 | 1.41e-11 | 63.9 |
MS.gene010006.t1 | AT3G15070 | 45.161 | 62 | 33 | 1 | 168 | 229 | 412 | 472 | 1.41e-11 | 63.9 |
MS.gene010006.t1 | AT5G42940 | 37.681 | 69 | 41 | 2 | 160 | 227 | 612 | 679 | 1.83e-11 | 63.5 |
MS.gene010006.t1 | AT5G42940 | 37.681 | 69 | 41 | 2 | 160 | 227 | 612 | 679 | 1.83e-11 | 63.5 |
MS.gene010006.t1 | AT4G34040 | 40.741 | 54 | 31 | 1 | 176 | 229 | 611 | 663 | 3.21e-11 | 62.8 |
MS.gene010006.t1 | AT2G15530 | 45.098 | 51 | 27 | 1 | 179 | 229 | 629 | 678 | 5.88e-11 | 62.0 |
MS.gene010006.t1 | AT5G67120 | 48.000 | 50 | 25 | 1 | 177 | 226 | 220 | 268 | 8.00e-11 | 60.8 |
Find 49 sgRNAs with CRISPR-Local
Find 80 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGTCGTGAGAATCTTGAATT+TGG | 0.134776 | 5.3:-54328843 | MS.gene010006:CDS |
AAAGCTCCAATCAACCTTTA+AGG | 0.240288 | 5.3:-54329331 | MS.gene010006:CDS |
AAATTTACCTGCGACCTTAA+AGG | 0.244607 | 5.3:+54329317 | None:intergenic |
GAACAACAAGTAACAATTAA+TGG | 0.277286 | 5.3:-54329679 | MS.gene010006:CDS |
TCCATTGTTTCTCTCACTTT+AGG | 0.294080 | 5.3:+54329622 | None:intergenic |
GATGTAATGTCAGGAAAATT+TGG | 0.316379 | 5.3:-54328624 | MS.gene010006:intron |
TTTGACGTTCCCAAGCAATT+TGG | 0.318565 | 5.3:+54329351 | None:intergenic |
AAGATTCTCACGACGAATAT+TGG | 0.334926 | 5.3:+54328851 | None:intergenic |
CATCTTCCACAACCGATTAA+TGG | 0.339547 | 5.3:-54329100 | MS.gene010006:CDS |
GAGAGAAACAATGGAGTATA+TGG | 0.346210 | 5.3:-54329614 | MS.gene010006:intron |
CTGCGACCTTAAAGGTTGAT+TGG | 0.360105 | 5.3:+54329325 | None:intergenic |
CTTCAAGCAATTTCAAAAGT+AGG | 0.364624 | 5.3:-54329849 | MS.gene010006:CDS |
GTCGTGAGAATCTTGAATTT+GGG | 0.369527 | 5.3:-54328842 | MS.gene010006:CDS |
AAGACTGGCTCCTAGCTATA+AGG | 0.376635 | 5.3:-54328541 | MS.gene010006:CDS |
GTGACGAAGACGTTCTCTTT+CGG | 0.384876 | 5.3:+54329750 | None:intergenic |
GGTTGGTTTGGACCATTAAT+CGG | 0.394654 | 5.3:+54329088 | None:intergenic |
GTTTCTCTCACTTTAGGATC+AGG | 0.407404 | 5.3:+54329628 | None:intergenic |
TGGGGTAACACAGGTTGGTT+TGG | 0.407758 | 5.3:+54329076 | None:intergenic |
TATTATAGGTCCAAATTGCT+TGG | 0.412627 | 5.3:-54329361 | MS.gene010006:intron |
TTCAAGCAATTTCAAAAGTA+GGG | 0.416269 | 5.3:-54329848 | MS.gene010006:CDS |
TGTTCAACAATCTGACCAAC+TGG | 0.418248 | 5.3:+54329697 | None:intergenic |
GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.3:+54329808 | None:intergenic |
AATAGCTCTGGGTACATAGC+TGG | 0.462378 | 5.3:+54329820 | None:intergenic |
CATTAATCGGTTGTGGAAGA+TGG | 0.472050 | 5.3:+54329101 | None:intergenic |
CTTCTACTTTGCGTATCCAT+CGG | 0.475904 | 5.3:+54328883 | None:intergenic |
ACAATTGTGCTGCATTTGTC+TGG | 0.487482 | 5.3:-54328799 | MS.gene010006:intron |
ATTATAGGTCCAAATTGCTT+GGG | 0.489909 | 5.3:-54329360 | MS.gene010006:intron |
TATGCCCTCTTTGCAATACA+AGG | 0.492492 | 5.3:-54328514 | MS.gene010006:CDS |
TGTCAGGAAAATTTGGCTGC+TGG | 0.496813 | 5.3:-54328617 | MS.gene010006:intron |
TTTGGACCATTAATCGGTTG+TGG | 0.503702 | 5.3:+54329094 | None:intergenic |
TCACGTAGATATTGAAAGAC+TGG | 0.509822 | 5.3:+54329787 | None:intergenic |
CAATCAACCTTTAAGGTCGC+AGG | 0.515350 | 5.3:-54329324 | MS.gene010006:intron |
ACATGAGTTGCATCAAAGAC+TGG | 0.516295 | 5.3:-54328556 | MS.gene010006:CDS |
TGGAGAAGAAATTGAAAGAC+TGG | 0.520154 | 5.3:-54328597 | MS.gene010006:CDS |
AAGAACATTATGATGTCTCT+AGG | 0.527328 | 5.3:-54329892 | None:intergenic |
GAAATTACTAAGATTCCAGT+TGG | 0.554578 | 5.3:-54329712 | MS.gene010006:CDS |
GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.3:+54329809 | None:intergenic |
ATGCCCTTGTATTGCAAAGA+GGG | 0.563590 | 5.3:+54328510 | None:intergenic |
GGCATACATTCCTTATAGCT+AGG | 0.586348 | 5.3:+54328531 | None:intergenic |
TCCTAAAGTGAGAGAAACAA+TGG | 0.600914 | 5.3:-54329623 | MS.gene010006:CDS |
TCGTGAGAATCTTGAATTTG+GGG | 0.614713 | 5.3:-54328841 | MS.gene010006:CDS |
ATGTCTCTAGGTCGAACTGA+AGG | 0.617564 | 5.3:-54329880 | MS.gene010006:CDS |
TGCAGAAACTTAACAACCGA+TGG | 0.625238 | 5.3:-54328899 | MS.gene010006:CDS |
GCTCTGGGTACATAGCTGGA+AGG | 0.649258 | 5.3:+54329824 | None:intergenic |
TATGCCCTTGTATTGCAAAG+AGG | 0.660563 | 5.3:+54328509 | None:intergenic |
AGAATAACTATATACAGCCA+CGG | 0.685225 | 5.3:-54328926 | MS.gene010006:CDS |
ATGCCCTCTTTGCAATACAA+GGG | 0.686099 | 5.3:-54328513 | MS.gene010006:CDS |
TTAAGTTTCTGCAGCCACCG+TGG | 0.730006 | 5.3:+54328909 | None:intergenic |
ATAACTATATACAGCCACGG+TGG | 0.806563 | 5.3:-54328923 | MS.gene010006:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATGTTACATTTACTAATT+AGG | - | chr5.3:54328928-54328947 | MS.gene010006:intron | 15.0% |
!! | TATATTGCAACTATTTAATT+AGG | + | chr5.3:54328893-54328912 | None:intergenic | 15.0% |
!! | TATGTTACATTTACTAATTA+GGG | - | chr5.3:54328929-54328948 | MS.gene010006:intron | 15.0% |
!! | TTATTCTTCAATTAAAATCA+AGG | + | chr5.3:54329440-54329459 | None:intergenic | 15.0% |
!! | AACATTTACAATATCATTTG+AGG | - | chr5.3:54329617-54329636 | MS.gene010006:CDS | 20.0% |
!! | ATAGTTGCAATATAAGAAAA+AGG | - | chr5.3:54328899-54328918 | MS.gene010006:CDS | 20.0% |
!! | TCAACTTCTAATCAAATATT+TGG | - | chr5.3:54329195-54329214 | MS.gene010006:intron | 20.0% |
!! | TCTAATCAAATATTTGGTAT+TGG | - | chr5.3:54329201-54329220 | MS.gene010006:intron | 20.0% |
!!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.3:54328812-54328831 | MS.gene010006:CDS | 20.0% |
! | AACAAATTTGATGTAATGTC+AGG | - | chr5.3:54329746-54329765 | MS.gene010006:CDS | 25.0% |
! | ATAATTTGATTGCTGAAGAT+GGG | + | chr5.3:54329325-54329344 | None:intergenic | 25.0% |
! | GAACAACAAGTAACAATTAA+TGG | - | chr5.3:54328700-54328719 | MS.gene010006:intron | 25.0% |
! | GTGTGTATTTATTTGAATCT+TGG | - | chr5.3:54328847-54328866 | MS.gene010006:CDS | 25.0% |
! | TTCAAGCAATTTCAAAAGTA+GGG | - | chr5.3:54328531-54328550 | MS.gene010006:CDS | 25.0% |
!! | AAAGTTTCACTCTTGTTTAT+TGG | - | chr5.3:54328961-54328980 | MS.gene010006:intron | 25.0% |
!! | AAGTTTCACTCTTGTTTATT+GGG | - | chr5.3:54328962-54328981 | MS.gene010006:intron | 25.0% |
!! | TATCATTTGAGGTTAACTTA+AGG | - | chr5.3:54329628-54329647 | MS.gene010006:CDS | 25.0% |
!!! | AAATTCATGGAATTTGTTGT+TGG | - | chr5.3:54328825-54328844 | MS.gene010006:CDS | 25.0% |
AAATTATCATGCTCAAAACG+AGG | - | chr5.3:54329338-54329357 | MS.gene010006:CDS | 30.0% | |
AGAATAACTATATACAGCCA+CGG | - | chr5.3:54329453-54329472 | MS.gene010006:intron | 30.0% | |
ATCTACGTGAGACTAAAAAA+AGG | - | chr5.3:54328605-54328624 | MS.gene010006:CDS | 30.0% | |
ATTATAGGTCCAAATTGCTT+GGG | - | chr5.3:54329019-54329038 | MS.gene010006:intron | 30.0% | |
CTTCAAGCAATTTCAAAAGT+AGG | - | chr5.3:54328530-54328549 | MS.gene010006:CDS | 30.0% | |
GAAATTACTAAGATTCCAGT+TGG | - | chr5.3:54328667-54328686 | MS.gene010006:intron | 30.0% | |
GATAATTTGATTGCTGAAGA+TGG | + | chr5.3:54329326-54329345 | None:intergenic | 30.0% | |
GATGTAATGTCAGGAAAATT+TGG | - | chr5.3:54329755-54329774 | MS.gene010006:CDS | 30.0% | |
TAATTTGATTGCTGAAGATG+GGG | + | chr5.3:54329324-54329343 | None:intergenic | 30.0% | |
TATTATAGGTCCAAATTGCT+TGG | - | chr5.3:54329018-54329037 | MS.gene010006:intron | 30.0% | |
TCTACGTGAGACTAAAAAAA+GGG | - | chr5.3:54328606-54328625 | MS.gene010006:CDS | 30.0% | |
!!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.3:54329004-54329023 | MS.gene010006:intron | 30.0% |
AAAGCTCCAATCAACCTTTA+AGG | - | chr5.3:54329048-54329067 | MS.gene010006:intron | 35.0% | |
AAATTTACCTGCGACCTTAA+AGG | + | chr5.3:54329065-54329084 | None:intergenic | 35.0% | |
AAGATTCTCACGACGAATAT+TGG | + | chr5.3:54329531-54329550 | None:intergenic | 35.0% | |
GACTAGAGAAAACTACGATT+TGG | + | chr5.3:54329174-54329193 | None:intergenic | 35.0% | |
GAGAGAAACAATGGAGTATA+TGG | - | chr5.3:54328765-54328784 | MS.gene010006:intron | 35.0% | |
GATCATCTTCAAATAGCTCT+GGG | + | chr5.3:54328573-54328592 | None:intergenic | 35.0% | |
GTCGTGAGAATCTTGAATTT+GGG | - | chr5.3:54329537-54329556 | MS.gene010006:intron | 35.0% | |
TCACGTAGATATTGAAAGAC+TGG | + | chr5.3:54328595-54328614 | None:intergenic | 35.0% | |
TCCTAAAGTGAGAGAAACAA+TGG | - | chr5.3:54328756-54328775 | MS.gene010006:intron | 35.0% | |
TCGTGAGAATCTTGAATTTG+GGG | - | chr5.3:54329538-54329557 | MS.gene010006:intron | 35.0% | |
TGGAGAAGAAATTGAAAGAC+TGG | - | chr5.3:54329782-54329801 | MS.gene010006:CDS | 35.0% | |
! | CAGCACAATTGTGTATTTTC+GGG | + | chr5.3:54329572-54329591 | None:intergenic | 35.0% |
! | GCAGCACAATTGTGTATTTT+CGG | + | chr5.3:54329573-54329592 | None:intergenic | 35.0% |
! | TCCATTGTTTCTCTCACTTT+AGG | + | chr5.3:54328760-54328779 | None:intergenic | 35.0% |
ACAATTGTGCTGCATTTGTC+TGG | - | chr5.3:54329580-54329599 | MS.gene010006:intron | 40.0% | |
ACATGAGTTGCATCAAAGAC+TGG | - | chr5.3:54329823-54329842 | MS.gene010006:CDS | 40.0% | |
ATAACTATATACAGCCACGG+TGG | - | chr5.3:54329456-54329475 | MS.gene010006:intron | 40.0% | |
ATGCCCTCTTTGCAATACAA+GGG | - | chr5.3:54329866-54329885 | MS.gene010006:CDS | 40.0% | |
ATGCCCTTGTATTGCAAAGA+GGG | + | chr5.3:54329872-54329891 | None:intergenic | 40.0% | |
CATCTTCCACAACCGATTAA+TGG | - | chr5.3:54329279-54329298 | MS.gene010006:intron | 40.0% | |
CATTAATCGGTTGTGGAAGA+TGG | + | chr5.3:54329281-54329300 | None:intergenic | 40.0% | |
CGTCGTGAGAATCTTGAATT+TGG | - | chr5.3:54329536-54329555 | MS.gene010006:intron | 40.0% | |
CTTCTACTTTGCGTATCCAT+CGG | + | chr5.3:54329499-54329518 | None:intergenic | 40.0% | |
GCTGCATTTGTCTGGTAATT+AGG | - | chr5.3:54329588-54329607 | MS.gene010006:intron | 40.0% | |
GGATCATCTTCAAATAGCTC+TGG | + | chr5.3:54328574-54328593 | None:intergenic | 40.0% | |
GGCATACATTCCTTATAGCT+AGG | + | chr5.3:54329851-54329870 | None:intergenic | 40.0% | |
TATGCCCTCTTTGCAATACA+AGG | - | chr5.3:54329865-54329884 | MS.gene010006:CDS | 40.0% | |
TATGCCCTTGTATTGCAAAG+AGG | + | chr5.3:54329873-54329892 | None:intergenic | 40.0% | |
TCTGATCCTGAAAAACTCGT+TGG | + | chr5.3:54329227-54329246 | None:intergenic | 40.0% | |
TGCAGAAACTTAACAACCGA+TGG | - | chr5.3:54329480-54329499 | MS.gene010006:intron | 40.0% | |
TGTTCAACAATCTGACCAAC+TGG | + | chr5.3:54328685-54328704 | None:intergenic | 40.0% | |
TTTGACGTTCCCAAGCAATT+TGG | + | chr5.3:54329031-54329050 | None:intergenic | 40.0% | |
TTTGGACCATTAATCGGTTG+TGG | + | chr5.3:54329288-54329307 | None:intergenic | 40.0% | |
! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.3:54329218-54329237 | MS.gene010006:intron | 40.0% |
!! | CAATTGTGTATTTTCGGGAC+TGG | + | chr5.3:54329567-54329586 | None:intergenic | 40.0% |
!! | GGTTGGTTTGGACCATTAAT+CGG | + | chr5.3:54329294-54329313 | None:intergenic | 40.0% |
!! | GTTTCTCTCACTTTAGGATC+AGG | + | chr5.3:54328754-54328773 | None:intergenic | 40.0% |
!!! | ACGAGTTTTTCAGGATCAGA+CGG | - | chr5.3:54329227-54329246 | MS.gene010006:intron | 40.0% |
ATGTCTCTAGGTCGAACTGA+AGG | - | chr5.3:54328499-54328518 | MS.gene010006:CDS | 45.0% | |
GTGACGAAGACGTTCTCTTT+CGG | + | chr5.3:54328632-54328651 | None:intergenic | 45.0% | |
TGTCAGGAAAATTTGGCTGC+TGG | - | chr5.3:54329762-54329781 | MS.gene010006:CDS | 45.0% | |
! | AAGACTGGCTCCTAGCTATA+AGG | - | chr5.3:54329838-54329857 | MS.gene010006:CDS | 45.0% |
! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.3:54329057-54329076 | None:intergenic | 45.0% |
!! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.3:54328562-54328581 | None:intergenic | 45.0% |
!! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.3:54329055-54329074 | MS.gene010006:intron | 45.0% |
GAAGATGGGGTAACACAGGT+TGG | + | chr5.3:54329311-54329330 | None:intergenic | 50.0% | |
TGCTGAAGATGGGGTAACAC+AGG | + | chr5.3:54329315-54329334 | None:intergenic | 50.0% | |
TTAAGTTTCTGCAGCCACCG+TGG | + | chr5.3:54329473-54329492 | None:intergenic | 50.0% | |
!! | TGGGGTAACACAGGTTGGTT+TGG | + | chr5.3:54329306-54329325 | None:intergenic | 50.0% |
! | GCTCTGGGTACATAGCTGGA+AGG | + | chr5.3:54328558-54328577 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.3 | gene | 54328496 | 54329905 | 54328496 | ID=MS.gene010006 |
chr5.3 | mRNA | 54328496 | 54329905 | 54328496 | ID=MS.gene010006.t1;Parent=MS.gene010006 |
chr5.3 | exon | 54329615 | 54329905 | 54329615 | ID=MS.gene010006.t1.exon1;Parent=MS.gene010006.t1 |
chr5.3 | CDS | 54329615 | 54329905 | 54329615 | ID=cds.MS.gene010006.t1;Parent=MS.gene010006.t1 |
chr5.3 | exon | 54329325 | 54329375 | 54329325 | ID=MS.gene010006.t1.exon2;Parent=MS.gene010006.t1 |
chr5.3 | CDS | 54329325 | 54329375 | 54329325 | ID=cds.MS.gene010006.t1;Parent=MS.gene010006.t1 |
chr5.3 | exon | 54329087 | 54329161 | 54329087 | ID=MS.gene010006.t1.exon3;Parent=MS.gene010006.t1 |
chr5.3 | CDS | 54329087 | 54329161 | 54329087 | ID=cds.MS.gene010006.t1;Parent=MS.gene010006.t1 |
chr5.3 | exon | 54328800 | 54328946 | 54328800 | ID=MS.gene010006.t1.exon4;Parent=MS.gene010006.t1 |
chr5.3 | CDS | 54328800 | 54328946 | 54328800 | ID=cds.MS.gene010006.t1;Parent=MS.gene010006.t1 |
chr5.3 | exon | 54328496 | 54328633 | 54328496 | ID=MS.gene010006.t1.exon5;Parent=MS.gene010006.t1 |
chr5.3 | CDS | 54328496 | 54328633 | 54328496 | ID=cds.MS.gene010006.t1;Parent=MS.gene010006.t1 |
Gene Sequence |
Protein sequence |