Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010008.t1 | AES98394.1 | 69.5 | 226 | 24 | 1 | 5 | 185 | 4 | 229 | 4.70E-80 | 307.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010008.t1 | Q9FMM4 | 34.5 | 58 | 38 | 0 | 123 | 180 | 611 | 668 | 4.1e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010008.t1 | G7KD92 | 69.5 | 226 | 24 | 1 | 5 | 185 | 4 | 229 | 3.4e-80 | 307.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94534 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene017970 | PPI |
| MS.gene94527 | MS.gene010008 | PPI |
| MS.gene28215 | MS.gene010008 | PPI |
| MS.gene94533 | MS.gene010008 | PPI |
| MS.gene94532 | MS.gene010008 | PPI |
| MS.gene041075 | MS.gene010008 | PPI |
| MS.gene97792 | MS.gene010008 | PPI |
| MS.gene047623 | MS.gene010008 | PPI |
| MS.gene28213 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene94530 | PPI |
| MS.gene93487 | MS.gene010008 | PPI |
| MS.gene017995 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene94537 | PPI |
| MS.gene015160 | MS.gene010008 | PPI |
| MS.gene010343 | MS.gene010008 | PPI |
| MS.gene79417 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene52667 | PPI |
| MS.gene93489 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene28214 | PPI |
| MS.gene79416 | MS.gene010008 | PPI |
| MS.gene010008 | MS.gene93488 | PPI |
| MS.gene055988 | MS.gene010008 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010008.t1 | MTR_5g068000 | 69.469 | 226 | 24 | 1 | 5 | 185 | 4 | 229 | 5.57e-104 | 299 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTCGTGAGAATCTTGAATT+TGG | 0.134776 | 5.3:-54257557 | MS.gene010008:CDS |
| TAGCTGGCAGGTTCATATTT+TGG | 0.213108 | 5.3:+54259338 | None:intergenic |
| AAATATACCTGCGACCTTAA+AGG | 0.219184 | 5.3:+54258815 | None:intergenic |
| AAAGCTCCAATCAACCTTTA+AGG | 0.240288 | 5.3:-54258829 | MS.gene010008:CDS |
| GTCTTAATCTTCTAGTTTAT+AGG | 0.260336 | 5.3:-54256958 | MS.gene010008:intron |
| GAACAACAAGTAACAATTAA+TGG | 0.277286 | 5.3:-54259181 | MS.gene010008:CDS |
| AAGATTCTCACGACGAATAT+TGG | 0.334926 | 5.3:+54257565 | None:intergenic |
| TTTGACGTCCCCAAGCAATT+TGG | 0.345197 | 5.3:+54258849 | None:intergenic |
| GTCGTGAGAATCTTGAATTT+GGG | 0.369527 | 5.3:-54257556 | MS.gene010008:CDS |
| GGAATCTTTGCAGTTTCAAC+TGG | 0.379486 | 5.3:+54259220 | None:intergenic |
| CTGCGACCTTAAAGGTTGAT+TGG | 0.396566 | 5.3:+54258823 | None:intergenic |
| GAGAGAAACGATGGAGTATA+TGG | 0.405916 | 5.3:-54259116 | MS.gene010008:intron |
| ATTATAGGTCCAAATTGCTT+GGG | 0.412553 | 5.3:-54258858 | MS.gene010008:intron |
| TGTTCAACAATCTGACCAAC+TGG | 0.418248 | 5.3:+54259199 | None:intergenic |
| GGATCATCTTCAAATAGCTC+TGG | 0.423511 | 5.3:+54259310 | None:intergenic |
| TATTATAGGTCCAAATTGCT+TGG | 0.426107 | 5.3:-54258859 | MS.gene010008:intron |
| ACAATCATGCTGCATTTGTC+TGG | 0.461362 | 5.3:-54257513 | MS.gene010008:intron |
| TCTAGTAGATATTTGAAGAC+TGG | 0.482679 | 5.3:+54259289 | None:intergenic |
| TTTACAACAATGAACACTAA+AGG | 0.485501 | 5.3:-54259692 | None:intergenic |
| ACATGAGTTGCATTAAAGAC+TGG | 0.489249 | 5.3:-54257291 | MS.gene010008:CDS |
| AATAGCTCTGGGTACATAGC+TGG | 0.495886 | 5.3:+54259322 | None:intergenic |
| GTTTCTCTCACTGTAGGATC+AGG | 0.501959 | 5.3:+54259130 | None:intergenic |
| CTTCTACATTGCGTATCCAC+CGG | 0.512860 | 5.3:+54257597 | None:intergenic |
| CAATCAACCTTTAAGGTCGC+AGG | 0.515350 | 5.3:-54258822 | MS.gene010008:intron |
| GATCATCTTCAAATAGCTCT+GGG | 0.557026 | 5.3:+54259311 | None:intergenic |
| GGATGCAGAAGCTTACCAAC+CGG | 0.573678 | 5.3:-54257616 | MS.gene010008:intron |
| GCTCTGGGTACATAGCTGGC+AGG | 0.577845 | 5.3:+54259326 | None:intergenic |
| TACATTGCGTATCCACCGGT+TGG | 0.594807 | 5.3:+54257601 | None:intergenic |
| GGCATACATTCTTAACAGCT+AGG | 0.595469 | 5.3:+54257266 | None:intergenic |
| GAAACTGCAAAGATTCCAGT+TGG | 0.606921 | 5.3:-54259214 | MS.gene010008:CDS |
| ATGTATCTAGGTCGAACTGA+AGG | 0.608971 | 5.3:-54259382 | MS.gene010008:intron |
| TCGTGAGAATCTTGAATTTG+GGG | 0.614713 | 5.3:-54257555 | MS.gene010008:CDS |
| TTATAGGTCCAAATTGCTTG+GGG | 0.620684 | 5.3:-54258857 | MS.gene010008:intron |
| TGCAGAAGCTTACCAACCGG+TGG | 0.631045 | 5.3:-54257613 | MS.gene010008:intron |
| TCTACTAGAGACTACAAAGA+GGG | 0.646438 | 5.3:-54259275 | MS.gene010008:CDS |
| TCCTACAGTGAGAGAAACGA+TGG | 0.649419 | 5.3:-54259125 | MS.gene010008:CDS |
| TCCATCGTTTCTCTCACTGT+AGG | 0.658197 | 5.3:+54259124 | None:intergenic |
| ATCTACTAGAGACTACAAAG+AGG | 0.668788 | 5.3:-54259276 | MS.gene010008:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAATTATAATTCTAAATTT+CGG | + | chr5.3:54257163-54257182 | None:intergenic | 10.0% |
| !! | AAAGAATTCAATTAAAATCA+AGG | + | chr5.3:54258968-54258987 | None:intergenic | 15.0% |
| !! | ATAATCACATATCATATATA+TGG | + | chr5.3:54258605-54258624 | None:intergenic | 15.0% |
| !! | ATTTCAATTAATGATGAAAA+TGG | - | chr5.3:54259415-54259434 | MS.gene010008:intron | 15.0% |
| !! | TATTAATTGTCAATTAGATT+GGG | - | chr5.3:54259536-54259555 | MS.gene010008:intron | 15.0% |
| !! | TTATACTACAACTATTAATT+AGG | + | chr5.3:54257647-54257666 | None:intergenic | 15.0% |
| !!! | TATGTTTGATTTACTAATTA+GGG | - | chr5.3:54257683-54257702 | MS.gene010008:intron | 15.0% |
| !!! | TTATGTTTGATTTACTAATT+AGG | - | chr5.3:54257682-54257701 | MS.gene010008:intron | 15.0% |
| !! | AAAAACATTATGATGTATCT+AGG | - | chr5.3:54257240-54257259 | MS.gene010008:intron | 20.0% |
| !! | ATAGTTGTAGTATAAGAAAA+AGG | - | chr5.3:54257652-54257671 | MS.gene010008:intron | 20.0% |
| !! | GTATTAATTGTCAATTAGAT+TGG | - | chr5.3:54259535-54259554 | MS.gene010008:intron | 20.0% |
| !! | TAATATATGTCCTTGAAAAT+GGG | - | chr5.3:54259469-54259488 | MS.gene010008:intron | 20.0% |
| !! | TATATGAATTCTCATGTATA+AGG | + | chr5.3:54258577-54258596 | None:intergenic | 20.0% |
| !! | TATCATATATATCACATGAT+AGG | + | chr5.3:54257187-54257206 | None:intergenic | 20.0% |
| !! | TCAACTTCTAATCAATTATT+TGG | - | chr5.3:54258677-54258696 | MS.gene010008:intron | 20.0% |
| !! | TCTAATCAATTATTTGGTAT+TGG | - | chr5.3:54258683-54258702 | MS.gene010008:intron | 20.0% |
| !!! | AAAATTGCACATTTTTCAAA+TGG | - | chr5.3:54258383-54258402 | MS.gene010008:intron | 20.0% |
| !!! | AAATTGCACATTTTTCAAAT+GGG | - | chr5.3:54258384-54258403 | MS.gene010008:intron | 20.0% |
| !!! | AATCTTCTAAAGTAAATTCA+TGG | - | chr5.3:54257565-54257584 | MS.gene010008:CDS | 20.0% |
| !!! | ATCTTCTAAAGTAAATTCAT+GGG | - | chr5.3:54257566-54257585 | MS.gene010008:CDS | 20.0% |
| !!! | ATCTTTTATTGTTGTTGTTT+TGG | - | chr5.3:54259577-54259596 | MS.gene010008:intron | 20.0% |
| !!! | CATATTTCTATAAGCTTTTT+AGG | - | chr5.3:54258487-54258506 | MS.gene010008:intron | 20.0% |
| !!! | TAATTAGGTTTTTTAACGTT+AGG | - | chr5.3:54259144-54259163 | MS.gene010008:CDS | 20.0% |
| ! | AAAATCTGGAAAAAACTATG+AGG | + | chr5.3:54259626-54259645 | None:intergenic | 25.0% |
| ! | AACAAATTTGATGTAATGTC+AGG | - | chr5.3:54259266-54259285 | MS.gene010008:CDS | 25.0% |
| ! | AATAAAAATATATACAGCCG+CGG | - | chr5.3:54258994-54259013 | MS.gene010008:intron | 25.0% |
| ! | AATATATGTCCTTGAAAATG+GGG | - | chr5.3:54259470-54259489 | MS.gene010008:intron | 25.0% |
| ! | ATAATTTGATTGCTGAAGAT+GGG | + | chr5.3:54258807-54258826 | None:intergenic | 25.0% |
| ! | CTAATATATGTCCTTGAAAA+TGG | - | chr5.3:54259468-54259487 | MS.gene010008:intron | 25.0% |
| ! | GAACAACAAGTAACAATTAA+TGG | - | chr5.3:54257453-54257472 | MS.gene010008:intron | 25.0% |
| ! | GCATGTATTTATTTGAATCT+TGG | - | chr5.3:54257601-54257620 | MS.gene010008:CDS | 25.0% |
| ! | GTAGTATAAGAAAAAGGAAT+TGG | - | chr5.3:54257658-54257677 | MS.gene010008:intron | 25.0% |
| ! | TCAATTAATGATGAAAATGG+AGG | - | chr5.3:54259418-54259437 | MS.gene010008:intron | 25.0% |
| ! | TTGTGTCAAATATTATGAGA+CGG | + | chr5.3:54258181-54258200 | None:intergenic | 25.0% |
| !! | AAAGTTTGACTCTTGTTTAA+TGG | - | chr5.3:54257718-54257737 | MS.gene010008:intron | 25.0% |
| !! | AAGTTTGACTCTTGTTTAAT+GGG | - | chr5.3:54257719-54257738 | MS.gene010008:intron | 25.0% |
| !! | ATAAATTATCCCCATTTTCA+AGG | + | chr5.3:54259482-54259501 | None:intergenic | 25.0% |
| !! | TCTAGCTTGTAATTAAAATC+TGG | + | chr5.3:54259640-54259659 | None:intergenic | 25.0% |
| !!! | AATTCATGGGAATTTGTTTT+TGG | - | chr5.3:54257579-54257598 | MS.gene010008:CDS | 25.0% |
| !!! | ACTTTATAGCTTTGTAAGTA+TGG | + | chr5.3:54258116-54258135 | None:intergenic | 25.0% |
| !!! | ATATTTTGGGTCATGTAATT+AGG | - | chr5.3:54256991-54257010 | MS.gene010008:intron | 25.0% |
| !!! | GTCTTAATCTTCTAGTTTAT+AGG | - | chr5.3:54259676-54259695 | MS.gene010008:intron | 25.0% |
| AAATTATCATGCTCAAAACG+AGG | - | chr5.3:54258820-54258839 | MS.gene010008:intron | 30.0% | |
| ATTATAGGTCCAAATTGCTT+GGG | - | chr5.3:54257776-54257795 | MS.gene010008:intron | 30.0% | |
| GACTAGAGAAAACTACAATT+TGG | + | chr5.3:54258656-54258675 | None:intergenic | 30.0% | |
| GATAATTTGATTGCTGAAGA+TGG | + | chr5.3:54258808-54258827 | None:intergenic | 30.0% | |
| TAATTTGATTGCTGAAGATG+GGG | + | chr5.3:54258806-54258825 | None:intergenic | 30.0% | |
| TATTATAGGTCCAAATTGCT+TGG | - | chr5.3:54257775-54257794 | MS.gene010008:intron | 30.0% | |
| TCTAGTAGATATTTGAAGAC+TGG | + | chr5.3:54257348-54257367 | None:intergenic | 30.0% | |
| TGCTTGCATTGTTAATCATT+TGG | - | chr5.3:54257207-54257226 | MS.gene010008:intron | 30.0% | |
| TTACTAAAAGATCTCTACCA+TGG | + | chr5.3:54257120-54257139 | None:intergenic | 30.0% | |
| TTTGTAAGTATGGATCTCTT+AGG | + | chr5.3:54258106-54258125 | None:intergenic | 30.0% | |
| ! | ATGTATTGACATGCGTAATA+AGG | + | chr5.3:54258208-54258227 | None:intergenic | 30.0% |
| !!! | AGGAAGAAGTTTTTGATTTG+TGG | - | chr5.3:54259445-54259464 | MS.gene010008:intron | 30.0% |
| !!! | CACTAGTTTTCGTGTATTAT+AGG | - | chr5.3:54257761-54257780 | MS.gene010008:intron | 30.0% |
| AAAGCTCCAATCAACCTTTA+AGG | - | chr5.3:54257805-54257824 | MS.gene010008:intron | 35.0% | |
| AAATATACCTGCGACCTTAA+AGG | + | chr5.3:54257822-54257841 | None:intergenic | 35.0% | |
| AAGATTCTCACGACGAATAT+TGG | + | chr5.3:54259072-54259091 | None:intergenic | 35.0% | |
| ACATGAGTTGCATTAAAGAC+TGG | - | chr5.3:54259343-54259362 | MS.gene010008:CDS | 35.0% | |
| ATCTACTAGAGACTACAAAG+AGG | - | chr5.3:54257358-54257377 | MS.gene010008:intron | 35.0% | |
| ATGCCCACTTTGCAATAAAA+GGG | - | chr5.3:54259386-54259405 | MS.gene010008:intron | 35.0% | |
| CAATTACCGTTACAATACCA+TGG | - | chr5.3:54257100-54257119 | MS.gene010008:intron | 35.0% | |
| GATCATCTTCAAATAGCTCT+GGG | + | chr5.3:54257326-54257345 | None:intergenic | 35.0% | |
| GGGTCATGTAATTAGGTTTA+TGG | - | chr5.3:54256998-54257017 | MS.gene010008:intron | 35.0% | |
| GTCAAATATTATGAGACGGA+GGG | + | chr5.3:54258177-54258196 | None:intergenic | 35.0% | |
| GTCGTGAGAATCTTGAATTT+GGG | - | chr5.3:54259078-54259097 | MS.gene010008:intron | 35.0% | |
| TATGCCCACTTTGCAATAAA+AGG | - | chr5.3:54259385-54259404 | MS.gene010008:intron | 35.0% | |
| TCGTGAGAATCTTGAATTTG+GGG | - | chr5.3:54259079-54259098 | MS.gene010008:intron | 35.0% | |
| TCTACTAGAGACTACAAAGA+GGG | - | chr5.3:54257359-54257378 | MS.gene010008:intron | 35.0% | |
| TCTCTACCATGGTATTGTAA+CGG | + | chr5.3:54257109-54257128 | None:intergenic | 35.0% | |
| TGTCAAATATTATGAGACGG+AGG | + | chr5.3:54258178-54258197 | None:intergenic | 35.0% | |
| TTATAGGTCCAAATTGCTTG+GGG | - | chr5.3:54257777-54257796 | MS.gene010008:intron | 35.0% | |
| TTCAAATGGGTCATCTATTG+CGG | - | chr5.3:54258397-54258416 | MS.gene010008:intron | 35.0% | |
| ! | AGATTGGGAAGTCTTTTCTT+TGG | - | chr5.3:54259551-54259570 | MS.gene010008:intron | 35.0% |
| ! | ATCCCCTTTTATTGCAAAGT+GGG | + | chr5.3:54259392-54259411 | None:intergenic | 35.0% |
| ! | CAGCATGATTGTGTATTTTC+GGG | + | chr5.3:54259113-54259132 | None:intergenic | 35.0% |
| ! | GATTGGGAAGTCTTTTCTTT+GGG | - | chr5.3:54259552-54259571 | MS.gene010008:intron | 35.0% |
| ! | GCAGCATGATTGTGTATTTT+CGG | + | chr5.3:54259114-54259133 | None:intergenic | 35.0% |
| ! | TATCCCCTTTTATTGCAAAG+TGG | + | chr5.3:54259393-54259412 | None:intergenic | 35.0% |
| AAAAATATATACAGCCGCGG+TGG | - | chr5.3:54258997-54259016 | MS.gene010008:intron | 40.0% | |
| ACAATCATGCTGCATTTGTC+TGG | - | chr5.3:54259121-54259140 | MS.gene010008:CDS | 40.0% | |
| ATGATGAAAATGGAGGCTGA+AGG | - | chr5.3:54259425-54259444 | MS.gene010008:intron | 40.0% | |
| ATGTATCTAGGTCGAACTGA+AGG | - | chr5.3:54257252-54257271 | MS.gene010008:intron | 40.0% | |
| CATCTTCCACAGCCAATTAA+TGG | - | chr5.3:54258761-54258780 | MS.gene010008:intron | 40.0% | |
| CATTAATTGGCTGTGGAAGA+TGG | + | chr5.3:54258763-54258782 | None:intergenic | 40.0% | |
| CGTCGTGAGAATCTTGAATT+TGG | - | chr5.3:54259077-54259096 | MS.gene010008:intron | 40.0% | |
| GAAACTGCAAAGATTCCAGT+TGG | - | chr5.3:54257420-54257439 | MS.gene010008:intron | 40.0% | |
| GAGAGAAACGATGGAGTATA+TGG | - | chr5.3:54257518-54257537 | MS.gene010008:CDS | 40.0% | |
| GCTGCATTTGTCTGGTAATT+AGG | - | chr5.3:54259129-54259148 | MS.gene010008:CDS | 40.0% | |
| GGAATCTTTGCAGTTTCAAC+TGG | + | chr5.3:54257417-54257436 | None:intergenic | 40.0% | |
| GGATCATCTTCAAATAGCTC+TGG | + | chr5.3:54257327-54257346 | None:intergenic | 40.0% | |
| GGCATACATTCTTAACAGCT+AGG | + | chr5.3:54259371-54259390 | None:intergenic | 40.0% | |
| TCAAATGGGTCATCTATTGC+GGG | - | chr5.3:54258398-54258417 | MS.gene010008:intron | 40.0% | |
| TGCCCACTTTGCAATAAAAG+GGG | - | chr5.3:54259387-54259406 | MS.gene010008:intron | 40.0% | |
| TGTTCAACAATCTGACCAAC+TGG | + | chr5.3:54257438-54257457 | None:intergenic | 40.0% | |
| TTTGGACCATTAATTGGCTG+TGG | + | chr5.3:54258770-54258789 | None:intergenic | 40.0% | |
| ! | TAGCTGGCAGGTTCATATTT+TGG | + | chr5.3:54257299-54257318 | None:intergenic | 40.0% |
| ! | TATTGGCCAACGAGTTTTTC+AGG | - | chr5.3:54258700-54258719 | MS.gene010008:intron | 40.0% |
| ! | TGTCAGGAAAATTTTGCTGC+TGG | - | chr5.3:54259282-54259301 | MS.gene010008:CDS | 40.0% |
| !! | GGTTGGTTTGGACCATTAAT+TGG | + | chr5.3:54258776-54258795 | None:intergenic | 40.0% |
| CTTCTACATTGCGTATCCAC+CGG | + | chr5.3:54259040-54259059 | None:intergenic | 45.0% | |
| GTTTCTCTCACTGTAGGATC+AGG | + | chr5.3:54257507-54257526 | None:intergenic | 45.0% | |
| TCCATCGTTTCTCTCACTGT+AGG | + | chr5.3:54257513-54257532 | None:intergenic | 45.0% | |
| TCCGATCCTGAAAAACTCGT+TGG | + | chr5.3:54258709-54258728 | None:intergenic | 45.0% | |
| TCCTACAGTGAGAGAAACGA+TGG | - | chr5.3:54257509-54257528 | MS.gene010008:intron | 45.0% | |
| TTTGACGTCCCCAAGCAATT+TGG | + | chr5.3:54257788-54257807 | None:intergenic | 45.0% | |
| ! | CTGCGACCTTAAAGGTTGAT+TGG | + | chr5.3:54257814-54257833 | None:intergenic | 45.0% |
| !! | AATAGCTCTGGGTACATAGC+TGG | + | chr5.3:54257315-54257334 | None:intergenic | 45.0% |
| !! | CAATCAACCTTTAAGGTCGC+AGG | - | chr5.3:54257812-54257831 | MS.gene010008:intron | 45.0% |
| !!! | ACGAGTTTTTCAGGATCGGA+CGG | - | chr5.3:54258709-54258728 | MS.gene010008:intron | 45.0% |
| !!! | GCCAACGAGTTTTTCAGGAT+CGG | - | chr5.3:54258705-54258724 | MS.gene010008:intron | 45.0% |
| !!! | AATTAATACATTTATTTTTA+AGG | + | chr5.3:54259524-54259543 | None:intergenic | 5.0% |
| !!! | TTTTTTAATTGTAATATTTT+GGG | - | chr5.3:54256978-54256997 | MS.gene010008:intron | 5.0% |
| !!! | TTTTTTTAATTGTAATATTT+TGG | - | chr5.3:54256977-54256996 | MS.gene010008:intron | 5.0% |
| ATGGGTCATCTATTGCGGGA+CGG | - | chr5.3:54258402-54258421 | MS.gene010008:intron | 50.0% | |
| GAAGATGGGGTAACACTGGT+TGG | + | chr5.3:54258793-54258812 | None:intergenic | 50.0% | |
| GGATGCAGAAGCTTACCAAC+CGG | - | chr5.3:54259018-54259037 | MS.gene010008:intron | 50.0% | |
| TACATTGCGTATCCACCGGT+TGG | + | chr5.3:54259036-54259055 | None:intergenic | 50.0% | |
| TGCTGAAGATGGGGTAACAC+TGG | + | chr5.3:54258797-54258816 | None:intergenic | 50.0% | |
| ! | TGGGGTAACACTGGTTGGTT+TGG | + | chr5.3:54258788-54258807 | None:intergenic | 50.0% |
| GTAAGCTTCTGCATCCACCG+CGG | + | chr5.3:54259014-54259033 | None:intergenic | 55.0% | |
| GTCATCTATTGCGGGACGGA+GGG | - | chr5.3:54258406-54258425 | MS.gene010008:intron | 55.0% | |
| TGCAGAAGCTTACCAACCGG+TGG | - | chr5.3:54259021-54259040 | MS.gene010008:intron | 55.0% | |
| GGTCATCTATTGCGGGACGG+AGG | - | chr5.3:54258405-54258424 | MS.gene010008:intron | 60.0% | |
| ! | GCTCTGGGTACATAGCTGGC+AGG | + | chr5.3:54257311-54257330 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 54256951 | 54259705 | 54256951 | ID=MS.gene010008 |
| chr5.3 | mRNA | 54256951 | 54259705 | 54256951 | ID=MS.gene010008.t1;Parent=MS.gene010008 |
| chr5.3 | exon | 54259693 | 54259705 | 54259693 | ID=MS.gene010008.t1.exon1;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54259693 | 54259705 | 54259693 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| chr5.3 | exon | 54259117 | 54259394 | 54259117 | ID=MS.gene010008.t1.exon2;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54259117 | 54259394 | 54259117 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| chr5.3 | exon | 54258823 | 54258873 | 54258823 | ID=MS.gene010008.t1.exon3;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54258823 | 54258873 | 54258823 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| chr5.3 | exon | 54257514 | 54257630 | 54257514 | ID=MS.gene010008.t1.exon4;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54257514 | 54257630 | 54257514 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| chr5.3 | exon | 54257273 | 54257368 | 54257273 | ID=MS.gene010008.t1.exon5;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54257273 | 54257368 | 54257273 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| chr5.3 | exon | 54256951 | 54256965 | 54256951 | ID=MS.gene010008.t1.exon6;Parent=MS.gene010008.t1 |
| chr5.3 | CDS | 54256951 | 54256965 | 54256951 | ID=cds.MS.gene010008.t1;Parent=MS.gene010008.t1 |
| Gene Sequence |
| Protein sequence |
