AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene010250

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010250.t1 MTR_5g062230 93.309 553 37 0 1 553 1 553 0.0 1080
MS.gene010250.t1 MTR_6g039440 76.854 553 128 0 1 553 1 553 0.0 904
MS.gene010250.t1 MTR_6g008560 72.531 557 149 2 1 553 1 557 0.0 856
MS.gene010250.t1 MTR_3g464190 66.427 557 183 2 1 553 1 557 0.0 784
MS.gene010250.t1 MTR_4g048460 67.577 549 175 1 8 553 13 561 0.0 777
MS.gene010250.t1 MTR_5g094620 63.849 556 179 2 1 553 1 537 0.0 753
MS.gene010250.t1 MTR_5g073200 64.760 542 190 1 13 553 8 549 0.0 744
MS.gene010250.t1 MTR_5g073260 62.523 555 203 3 1 553 1 552 0.0 741
MS.gene010250.t1 MTR_4g081460 54.399 557 248 3 2 553 7 562 0.0 637
MS.gene010250.t1 MTR_6g008560 72.569 401 110 0 153 553 1 401 0.0 628
MS.gene010250.t1 MTR_4g048460 66.814 452 147 1 8 456 13 464 0.0 628
MS.gene010250.t1 MTR_2g082010 45.604 546 289 7 13 553 26 568 1.45e-169 493
MS.gene010250.t1 MTR_8g007515 43.956 546 298 6 14 553 13 556 4.87e-166 483
MS.gene010250.t1 MTR_2g081980 43.292 559 309 7 1 553 1 557 1.32e-164 479
MS.gene010250.t1 MTR_2g082060 42.143 560 302 10 1 553 9 553 1.60e-151 446
MS.gene010250.t1 MTR_4g019550 41.385 563 307 9 1 553 9 558 5.64e-148 437
MS.gene010250.t1 MTR_2g082050 39.723 506 244 9 50 551 9 457 2.69e-119 360
MS.gene010250.t1 MTR_4g045810 33.333 546 359 3 7 551 38 579 5.13e-108 335
MS.gene010250.t1 MTR_2g064425 33.516 546 353 6 9 552 48 585 2.58e-98 310
MS.gene010250.t1 MTR_2g089120 33.594 512 317 9 48 552 69 564 1.80e-93 297
MS.gene010250.t1 MTR_7g057340 76.744 172 40 0 382 553 1 172 2.69e-92 280
MS.gene010250.t1 MTR_2g064425 32.234 546 345 8 9 552 48 570 1.66e-90 289
MS.gene010250.t1 MTR_2g089130 32.996 494 312 7 64 552 84 563 3.01e-90 288
MS.gene010250.t1 MTR_8g057020 31.793 541 360 5 14 552 55 588 8.51e-90 288
MS.gene010250.t1 MTR_2g065450 31.408 554 363 6 7 552 45 589 1.00e-87 282
MS.gene010250.t1 MTR_7g057390 72.674 172 44 1 382 553 1 169 2.39e-84 259
MS.gene010250.t1 MTR_2g064425 40.217 368 211 5 9 374 48 408 2.25e-83 266
MS.gene010250.t1 MTR_4g092020 33.075 517 331 8 40 551 63 569 3.85e-81 265
MS.gene010250.t1 MTR_7g010710 28.986 552 383 6 2 549 5 551 6.48e-78 256
MS.gene010250.t1 MTR_4g092010 29.834 543 370 8 12 549 20 556 2.99e-77 254
MS.gene010250.t1 MTR_2g064425 38.315 368 203 7 9 374 48 393 2.78e-75 245
MS.gene010250.t1 MTR_5g094530 52.752 218 67 3 163 378 1 184 2.74e-70 224
MS.gene010250.t1 MTR_2g010960 26.680 506 356 7 38 531 1 503 1.00e-63 217
MS.gene010250.t1 MTR_6g064980 26.347 501 347 8 60 547 21 512 2.63e-56 197
MS.gene010250.t1 MTR_3g052120 27.921 505 349 10 52 547 14 512 5.09e-56 196
MS.gene010250.t1 MTR_3g063170 26.392 485 333 10 60 529 21 496 2.65e-55 194
MS.gene010250.t1 MTR_7g050990 52.747 182 75 2 197 378 28 198 3.15e-55 200
MS.gene010250.t1 MTR_3g063120 26.850 473 331 8 70 531 6 474 6.58e-55 193
MS.gene010250.t1 MTR_3g465090 26.250 480 344 8 60 531 21 498 1.61e-54 192
MS.gene010250.t1 MTR_3g063140 25.678 479 348 7 60 531 21 498 3.05e-53 189
MS.gene010250.t1 MTR_3g015080 48.837 172 50 2 382 553 1 134 9.77e-47 160
MS.gene010250.t1 MTR_6g065040 26.316 399 281 7 142 531 2 396 2.36e-45 165
MS.gene010250.t1 MTR_3g058160 27.146 431 277 14 66 467 64 486 2.47e-36 143
MS.gene010250.t1 MTR_3g058160 27.146 431 277 14 66 467 255 677 5.90e-36 143
MS.gene010250.t1 MTR_3g058160 27.146 431 277 14 66 467 275 697 7.13e-36 143
MS.gene010250.t1 MTR_3g058160 27.146 431 277 14 66 467 268 690 7.40e-36 143
MS.gene010250.t1 MTR_2g064295 26.494 385 257 9 66 427 255 636 1.88e-33 135
MS.gene010250.t1 MTR_3g058160 25.885 452 277 14 66 467 275 718 4.21e-33 135
MS.gene010250.t1 MTR_3g063160 29.197 274 180 6 60 325 21 288 1.44e-31 124
MS.gene010250.t1 MTR_2g012900 24.200 500 332 15 21 484 212 700 1.35e-29 124
MS.gene010250.t1 MTR_2g012870 23.992 471 323 13 21 468 212 670 4.03e-26 113
MS.gene010250.t1 MTR_7g094970 27.239 268 167 6 70 310 211 477 1.86e-21 99.0
MS.gene010250.t1 MTR_7g011663 28.244 262 160 5 68 302 347 607 4.91e-20 94.7
MS.gene010250.t1 MTR_7g011770 28.866 291 178 7 70 332 245 534 3.06e-19 92.0
MS.gene010250.t1 MTR_5g030050 27.273 264 159 7 70 309 3 257 6.48e-19 88.2
MS.gene010250.t1 MTR_5g081730 37.500 96 60 0 159 254 16 111 3.62e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene010250.t1 AT5G23960 41.176 544 311 5 14 553 7 545 1.64e-151 446
MS.gene010250.t1 AT5G23960 41.209 546 310 6 14 553 7 547 1.91e-151 446
MS.gene010250.t1 AT3G14490 37.729 546 330 5 14 553 60 601 1.62e-122 373
MS.gene010250.t1 AT1G70080 36.814 565 334 10 5 553 54 611 7.68e-122 372
MS.gene010250.t1 AT1G31950 33.333 543 348 6 19 553 70 606 6.44e-114 351
MS.gene010250.t1 AT3G29410 34.807 543 348 4 14 553 64 603 2.84e-113 349
MS.gene010250.t1 AT1G31950 33.272 544 348 7 19 553 70 607 3.20e-113 349
MS.gene010250.t1 AT1G33750 34.608 549 341 9 13 553 65 603 1.45e-111 345
MS.gene010250.t1 AT3G14520 33.579 542 348 6 19 553 68 604 3.01e-109 339
MS.gene010250.t1 AT5G44630 35.283 547 339 10 15 551 14 555 9.82e-109 336
MS.gene010250.t1 AT3G14540 33.886 543 345 6 19 553 65 601 1.44e-108 337
MS.gene010250.t1 AT3G29410 35.529 501 317 4 56 553 1 498 1.36e-107 331
MS.gene010250.t1 AT4G15870 35.754 537 319 11 24 551 77 596 4.97e-105 328
MS.gene010250.t1 AT4G13300 35.568 537 331 8 24 551 22 552 2.21e-104 325
MS.gene010250.t1 AT3G32030 33.457 541 350 7 19 553 68 604 4.01e-103 323
MS.gene010250.t1 AT4G20230 34.720 553 339 12 12 551 60 603 1.55e-100 317
MS.gene010250.t1 AT4G20230 34.608 549 341 10 12 549 72 613 2.22e-100 317
MS.gene010250.t1 AT4G20210 32.790 552 362 6 8 553 52 600 7.98e-100 314
MS.gene010250.t1 AT4G20200 33.759 548 350 7 14 553 62 604 6.03e-99 312
MS.gene010250.t1 AT4G13280 35.688 538 333 8 24 553 22 554 1.21e-97 307
MS.gene010250.t1 AT3G29190 34.142 536 344 6 24 553 69 601 4.73e-97 307
MS.gene010250.t1 AT4G16730 32.505 523 337 6 43 553 21 539 1.24e-94 299
MS.gene010250.t1 AT1G31950 34.234 444 282 5 19 456 70 509 4.27e-94 297
MS.gene010250.t1 AT4G16730 32.863 496 318 5 70 553 1 493 2.76e-92 291
MS.gene010250.t1 AT1G66020 33.880 549 348 9 14 553 56 598 1.66e-91 293
MS.gene010250.t1 AT2G23230 31.884 552 355 10 13 551 55 598 9.62e-91 291
MS.gene010250.t1 AT3G29110 33.394 545 352 7 14 551 55 595 1.24e-90 290
MS.gene010250.t1 AT2G23230 32.123 551 350 10 13 551 55 593 8.64e-90 288
MS.gene010250.t1 AT1G48800 32.558 559 360 10 2 549 50 602 1.48e-89 288
MS.gene010250.t1 AT3G14540 33.630 449 285 5 19 460 65 507 1.55e-87 280
MS.gene010250.t1 AT4G13280 34.572 538 309 9 24 553 22 524 1.51e-86 278
MS.gene010250.t1 AT4G16740 31.127 559 359 11 7 553 20 564 1.63e-84 273
MS.gene010250.t1 AT2G24210 30.727 550 356 9 13 551 45 580 3.58e-84 273
MS.gene010250.t1 AT3G25810 30.986 568 369 9 3 553 36 597 3.82e-84 273
MS.gene010250.t1 AT3G25830 30.526 570 370 10 3 553 32 594 5.73e-84 273
MS.gene010250.t1 AT3G25820 30.526 570 370 10 3 553 32 594 5.73e-84 273
MS.gene010250.t1 AT1G48820 32.169 544 317 12 13 549 62 560 1.88e-80 263
MS.gene010250.t1 AT1G61680 30.943 488 321 7 52 531 78 557 4.62e-78 256
MS.gene010250.t1 AT1G61680 30.738 488 315 8 52 531 78 550 3.13e-75 249
MS.gene010250.t1 AT5G48110 36.842 342 211 5 213 553 2 339 1.95e-74 240
MS.gene010250.t1 AT4G16740 33.943 383 232 8 7 378 20 392 1.48e-65 219
MS.gene010250.t1 AT1G66020 36.413 368 223 7 14 374 56 419 2.75e-64 216
MS.gene010250.t1 AT3G25820 31.762 403 254 7 3 391 32 427 3.57e-63 214
MS.gene010250.t1 AT4G16740 35.542 332 193 8 7 327 20 341 4.27e-56 193
MS.gene010250.t1 AT4G16740 35.542 332 193 8 7 327 20 341 4.27e-56 193
MS.gene010250.t1 AT3G25820 32.743 339 207 7 3 327 32 363 2.69e-53 186
MS.gene010250.t1 AT3G25820 32.743 339 207 7 3 327 32 363 2.69e-53 186
MS.gene010250.t1 AT1G79460 23.992 521 349 19 66 553 273 779 3.13e-25 110
MS.gene010250.t1 AT1G61120 23.930 514 354 16 65 553 283 784 9.58e-22 100
MS.gene010250.t1 AT4G02780 28.625 269 156 7 68 305 332 595 1.04e-19 93.6

Find 88 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCTCTCGCTGTGCTATTT+AGG 0.126479 5.1:+47981498 MS.gene010250:CDS
AGATGTGTTCACCAAGTTTA+AGG 0.132901 5.1:+47982115 MS.gene010250:intron
GACTACATGAAATTAATTTA+TGG 0.181873 5.1:+47982958 MS.gene010250:CDS
CACAAGAGCTATGTTGAAAA+TGG 0.199028 5.1:+47981449 MS.gene010250:CDS
TATTCATGGTGAGGAAATTT+TGG 0.203789 5.1:+47982217 MS.gene010250:CDS
CTCTCTCGCTGTGCTATTTA+GGG 0.207543 5.1:+47981499 MS.gene010250:CDS
CCACGGAGAACATCTTAAAT+TGG 0.212780 5.1:+47984784 MS.gene010250:CDS
AGCCAATCTTTGCAGGTTAA+TGG 0.266883 5.1:+47984839 MS.gene010250:CDS
TAAATTAATTTCATGTAGTC+TGG 0.305183 5.1:-47982955 None:intergenic
CAGAATTTCACCCAAATGTC+TGG 0.305980 5.1:+47981114 MS.gene010250:CDS
GGATTGTCGAATGTTGCTTC+TGG 0.309086 5.1:+47982641 MS.gene010250:CDS
AAATATTCTCCCCAGACATT+TGG 0.320286 5.1:-47981125 None:intergenic
GTCTAGGGAAGCTGCTATTC+AGG 0.321920 5.1:+47985225 MS.gene010250:CDS
ATTTCCTTGCTAGAGAATAC+TGG 0.329894 5.1:-47982687 None:intergenic
AGAACATGTTTGCTCATTGT+TGG 0.346684 5.1:+47985177 MS.gene010250:CDS
AGATTTCTTTGCTTGGCGTC+AGG 0.356623 5.1:-47981089 None:intergenic
GTGCCGCAGCCAATCTTTGC+AGG 0.361551 5.1:+47984832 MS.gene010250:CDS
ATCCATTAACCTGCAAAGAT+TGG 0.365552 5.1:-47984841 None:intergenic
CTAAAACTGGATGTTTAGAT+TGG 0.372183 5.1:-47985448 None:intergenic
AATATTCTCCCCAGACATTT+GGG 0.380119 5.1:-47981124 None:intergenic
AAGAAAAGGCATTGGAACTT+TGG 0.385858 5.1:-47985308 None:intergenic
GCCTCACATATGATTATTCA+TGG 0.405112 5.1:+47982203 MS.gene010250:CDS
CAGGTGGGATATTAGCATCT+TGG 0.406616 5.1:+47982924 MS.gene010250:intron
GACAAACCTTTCAATTGCCT+TGG 0.422328 5.1:-47982794 None:intergenic
TTCTGCAAGATTTCTTTGCT+TGG 0.427036 5.1:-47981096 None:intergenic
ACAATCCTTTGACGTGCATA+AGG 0.431987 5.1:-47982625 None:intergenic
TTAACTTCTTACATTGGAAT+GGG 0.433315 5.1:+47984753 MS.gene010250:CDS
AGTCAAATATGCTTTAAAAC+AGG 0.447406 5.1:+47982313 MS.gene010250:CDS
AGAAGGGAATTGCAATTGCT+TGG 0.448814 5.1:+47985254 MS.gene010250:CDS
GAGCAGGAAATGAGGAAAGA+AGG 0.449185 5.1:+47983009 MS.gene010250:CDS
ATTAACTTCTTACATTGGAA+TGG 0.453994 5.1:+47984752 MS.gene010250:CDS
TGCATGTACTCCTCTATAGT+TGG 0.456475 5.1:-47984693 None:intergenic
AAAGGCATTGGAACTTTGGT+TGG 0.460975 5.1:-47985304 None:intergenic
CACGGAGAACATCTTAAATT+GGG 0.470605 5.1:+47984785 MS.gene010250:CDS
GATGATACATATGATGCATA+TGG 0.472052 5.1:+47982745 MS.gene010250:CDS
TTAAAGATGGTGGAAGGAGT+TGG 0.472988 5.1:+47982585 MS.gene010250:intron
TCCTTGTTCGTCCTTAAACT+TGG 0.475484 5.1:-47982126 None:intergenic
TGCAAGAAAGTGACTCATTT+GGG 0.479387 5.1:-47982285 None:intergenic
GTGCAAGAAAGTGACTCATT+TGG 0.482880 5.1:-47982286 None:intergenic
TGAAGCAGTATGATATGTCT+AGG 0.485271 5.1:+47985209 MS.gene010250:CDS
AAACTATATACCAACTATAG+AGG 0.488005 5.1:+47984683 MS.gene010250:CDS
GTGACTCATTTGGGTGGCAA+TGG 0.495173 5.1:-47982276 None:intergenic
TTGATATTAACTTCTTACAT+TGG 0.498156 5.1:+47984747 MS.gene010250:CDS
TTTCCTTGCTAGAGAATACT+GGG 0.503157 5.1:-47982686 None:intergenic
AAGAAGTAGAGCAGGAAATG+AGG 0.507319 5.1:+47983001 MS.gene010250:CDS
CTAGCCTAGGCAAGTTCTTG+TGG 0.511392 5.1:-47982340 None:intergenic
TTGAGAGCACGAATAAGAAA+AGG 0.516227 5.1:-47985322 None:intergenic
GATTTCTTTGCTTGGCGTCA+GGG 0.518796 5.1:-47981088 None:intergenic
AGAATTTCACCCAAATGTCT+GGG 0.526240 5.1:+47981115 MS.gene010250:CDS
AATTAATTTATGGAACACTC+TGG 0.533198 5.1:+47982968 MS.gene010250:CDS
AAATTAATTTCATGTAGTCT+GGG 0.534467 5.1:-47982954 None:intergenic
TGATCTTTAAAGATGGTGGA+AGG 0.548329 5.1:+47982579 MS.gene010250:intron
ACGACATATTGAATCAATCA+AGG 0.552162 5.1:-47981372 None:intergenic
GACAATTACACGCATTCTGA+AGG 0.553092 5.1:+47985382 MS.gene010250:CDS
ATAGCACAGCGAGAGAGTAA+AGG 0.556765 5.1:-47981493 None:intergenic
AGCCCCAGTATTCTCTAGCA+AGG 0.562995 5.1:+47982683 MS.gene010250:CDS
TGCTATTCAGGAATGTCAGA+AGG 0.563311 5.1:+47985237 MS.gene010250:CDS
AACTGCCTTATGCACGTCAA+AGG 0.565440 5.1:+47982620 MS.gene010250:CDS
TGGCCTCAGTAATAAAACCT+TGG 0.569302 5.1:-47984647 None:intergenic
CAAGAACTTGCCTAGGCTAG+AGG 0.572557 5.1:+47982343 MS.gene010250:CDS
CTATCCACAAGAACTTGCCT+AGG 0.575079 5.1:+47982336 MS.gene010250:CDS
ATTGATTCAATATGTCGTCT+CGG 0.576187 5.1:+47981377 MS.gene010250:CDS
CAGATAAAAGTGGCAGTCCA+AGG 0.576980 5.1:+47984630 MS.gene010250:intron
TCAATATGCTTCAGAATCGA+TGG 0.579838 5.1:+47981151 MS.gene010250:CDS
GCACGAATAAGAAAAGGCAT+TGG 0.582827 5.1:-47985316 None:intergenic
TTTAAAGCATATTTGACTTG+TGG 0.583084 5.1:-47982308 None:intergenic
GGCAATGGACTCGAGGTGAG+TGG 0.598560 5.1:-47982261 None:intergenic
GAAGCAGTATGATATGTCTA+GGG 0.603557 5.1:+47985210 MS.gene010250:CDS
ACCAAGTTTAAGGACGAACA+AGG 0.604339 5.1:+47982125 MS.gene010250:CDS
ACATATGATTATTCATGGTG+AGG 0.605484 5.1:+47982208 MS.gene010250:CDS
TAACCTGCAAAGATTGGCTG+CGG 0.606263 5.1:-47984835 None:intergenic
AGACTAATCACCGACATCGA+AGG 0.614222 5.1:+47982161 MS.gene010250:CDS
TACCGTCGTGCCTCTAGCCT+AGG 0.623947 5.1:-47982353 None:intergenic
ACCATGAATAATCATATGTG+AGG 0.625662 5.1:-47982204 None:intergenic
TGCTTGGAAAGATATAAATG+AGG 0.630445 5.1:+47985270 MS.gene010250:CDS
TTTGGGTGGCAATGGACTCG+AGG 0.636802 5.1:-47982268 None:intergenic
GCTTAACATACCTTCGATGT+CGG 0.640694 5.1:-47982171 None:intergenic
AGTAGAGTTTCATCACGCGA+AGG 0.640741 5.1:-47982398 None:intergenic
GCTATTCAGGAATGTCAGAA+GGG 0.644959 5.1:+47985238 MS.gene010250:CDS
CCAATTTAAGATGTTCTCCG+TGG 0.645679 5.1:-47984784 None:intergenic
TTCGTGATGGCAGATAAAAG+TGG 0.680626 5.1:+47984620 MS.gene010250:intron
AAGAAAGTGACTCATTTGGG+TGG 0.686363 5.1:-47982282 None:intergenic
GAATTTCACCCAAATGTCTG+GGG 0.686951 5.1:+47981116 MS.gene010250:CDS
TTCCTTGCTAGAGAATACTG+GGG 0.699519 5.1:-47982685 None:intergenic
TGCCTAGGCTAGAGGCACGA+CGG 0.712538 5.1:+47982351 MS.gene010250:CDS
AGATTGGAACACGATCAACA+AGG 0.719811 5.1:-47985432 None:intergenic
GGATGAAATTGTCTCCAGCG+AGG 0.739710 5.1:+47984860 MS.gene010250:CDS
TGGAATGGGAGAAAATACCA+CGG 0.766243 5.1:+47984767 MS.gene010250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATAATTATATATTTTAT+GGG + chr5.1:47984915-47984934 MS.gene010250:intron 0.0%
!!! TAATATAATTATATATTTTA+TGG + chr5.1:47984914-47984933 MS.gene010250:intron 0.0%
!! AATATAAAAAAGTTATTAAC+AGG - chr5.1:47982554-47982573 None:intergenic 10.0%
!! ATTGTTCTTATTAAAATAAA+TGG - chr5.1:47983844-47983863 None:intergenic 10.0%
!!! AAAAATATTTTTTATAAGCA+GGG - chr5.1:47982873-47982892 None:intergenic 10.0%
!!! CTTTTAACTTTTTTAAATAT+AGG - chr5.1:47982897-47982916 None:intergenic 10.0%
!! ACAAATTGATTAATTTATCA+AGG - chr5.1:47984436-47984455 None:intergenic 15.0%
!! TACATTTACTATAAATTTCA+TGG + chr5.1:47984457-47984476 MS.gene010250:intron 15.0%
!! TGATTAATAAGATTCATTTA+AGG - chr5.1:47984024-47984043 None:intergenic 15.0%
!! TTAAGAAACTTAACATTATT+TGG + chr5.1:47984270-47984289 MS.gene010250:intron 15.0%
!!! AAAATATTTTTTATAAGCAG+GGG - chr5.1:47982872-47982891 None:intergenic 15.0%
!!! AATACAAAATTACTCTTTTT+AGG + chr5.1:47983402-47983421 MS.gene010250:intron 15.0%
!!! ACATTTTTTTTAGCTTATAT+TGG - chr5.1:47981940-47981959 None:intergenic 15.0%
!!! ATAAGCAAAATTTACTTTTT+AGG + chr5.1:47983205-47983224 MS.gene010250:intron 15.0%
!!! ATATAAGCAAAATTCTTTTT+AGG - chr5.1:47983294-47983313 None:intergenic 15.0%
!!! ATTTAATTCTAATTTTGTGA+AGG + chr5.1:47984217-47984236 MS.gene010250:intron 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG + chr5.1:47983301-47983320 MS.gene010250:intron 15.0%
!!! GAAAAATATTTTTTATAAGC+AGG - chr5.1:47982874-47982893 None:intergenic 15.0%
!!! TAAAAAGAGTAATTTTGTAT+TGG - chr5.1:47983403-47983422 None:intergenic 15.0%
!!! TAAGAAACTTAACATTATTT+TGG + chr5.1:47984271-47984290 MS.gene010250:intron 15.0%
!!! TGCTTATATATATTTTGAAA+CGG - chr5.1:47983192-47983211 None:intergenic 15.0%
!! AAATTAATTTCATGTAGTCT+GGG - chr5.1:47982957-47982976 None:intergenic 20.0%
!! AATAAAATATGTTTGAGTCA+TGG - chr5.1:47981570-47981589 None:intergenic 20.0%
!! AATTGATTAATTTATCAAGG+AGG - chr5.1:47984433-47984452 None:intergenic 20.0%
!! ATAATATCATAACCAATTAG+TGG - chr5.1:47981196-47981215 None:intergenic 20.0%
!! ATATCGTGTGAAATAAAATA+AGG - chr5.1:47985105-47985124 None:intergenic 20.0%
!! CATTCATTTAATGATATATG+TGG - chr5.1:47983269-47983288 None:intergenic 20.0%
!! GACTACATGAAATTAATTTA+TGG + chr5.1:47982958-47982977 MS.gene010250:CDS 20.0%
!! GTAACAAAACAAAATTAAAG+TGG + chr5.1:47982522-47982541 MS.gene010250:intron 20.0%
!! TAAATTAATTTCATGTAGTC+TGG - chr5.1:47982958-47982977 None:intergenic 20.0%
!! TATCGTGTGAAATAAAATAA+GGG - chr5.1:47985104-47985123 None:intergenic 20.0%
!! TGTAGTCAATGTTTATAAAA+TGG + chr5.1:47983531-47983550 MS.gene010250:intron 20.0%
!! TTGATATTAACTTCTTACAT+TGG + chr5.1:47984747-47984766 MS.gene010250:CDS 20.0%
!!! AAAAGTTAAAAGTGATTTTC+AGG + chr5.1:47982905-47982924 MS.gene010250:intron 20.0%
!!! ACATAATTTTTTGTGTACTA+AGG - chr5.1:47981975-47981994 None:intergenic 20.0%
!!! ATACTTTTGTTGAAATTAAG+CGG - chr5.1:47985005-47985024 None:intergenic 20.0%
!!! CATAATTTTTTGTGTACTAA+GGG - chr5.1:47981974-47981993 None:intergenic 20.0%
!!! TATATATATTTTGAAACGGA+GGG - chr5.1:47983188-47983207 None:intergenic 20.0%
!!! TATTAGCGTTAATTATTTCT+TGG + chr5.1:47985133-47985152 MS.gene010250:intron 20.0%
!!! TTATATATATTTTGAAACGG+AGG - chr5.1:47983189-47983208 None:intergenic 20.0%
!!! TTATTTTTTTATGCGACTAA+TGG + chr5.1:47982061-47982080 MS.gene010250:intron 20.0%
!!! TTCTTTTATAAAGTACTTCA+TGG - chr5.1:47983046-47983065 None:intergenic 20.0%
!!! TTGATTTTGATCTTTAAAGA+TGG + chr5.1:47982572-47982591 MS.gene010250:intron 20.0%
! AAACTATATACCAACTATAG+AGG + chr5.1:47984683-47984702 MS.gene010250:CDS 25.0%
! AATTAATTTATGGAACACTC+TGG + chr5.1:47982968-47982987 MS.gene010250:CDS 25.0%
! ATTAACTTCTTACATTGGAA+TGG + chr5.1:47984752-47984771 MS.gene010250:CDS 25.0%
! ATTTGTTTCCAACCAAATAA+AGG - chr5.1:47984199-47984218 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + chr5.1:47983230-47983249 MS.gene010250:intron 25.0%
! CTAGTAATAGAATCCTTAAT+GGG - chr5.1:47984960-47984979 None:intergenic 25.0%
! GAAACTTAACATTATTTGGT+TGG + chr5.1:47984274-47984293 MS.gene010250:intron 25.0%
! GATATATGTGGTTCATAATA+TGG - chr5.1:47983257-47983276 None:intergenic 25.0%
! TATTGAATAATGTCGACAAT+AGG + chr5.1:47981651-47981670 MS.gene010250:intron 25.0%
! TCTAGTAATAGAATCCTTAA+TGG - chr5.1:47984961-47984980 None:intergenic 25.0%
! TTAACTTCTTACATTGGAAT+GGG + chr5.1:47984753-47984772 MS.gene010250:CDS 25.0%
! TTTGTATTGGAAAACACAAT+AGG - chr5.1:47983390-47983409 None:intergenic 25.0%
!! TCATAATGTCTTGTTAGTTT+AGG + chr5.1:47984134-47984153 MS.gene010250:intron 25.0%
!! TTTTTCTTCATTTACGGATA+TGG - chr5.1:47981750-47981769 None:intergenic 25.0%
!!! AAAAAGTTCTAGTTCATCAA+TGG - chr5.1:47982773-47982792 None:intergenic 25.0%
!!! AGTCAAATATGCTTTAAAAC+AGG + chr5.1:47982313-47982332 MS.gene010250:CDS 25.0%
!!! ATATTGCTATTTCCACTAAT+TGG + chr5.1:47981181-47981200 MS.gene010250:intron 25.0%
!!! ATTTTGATCTTTAAAGATGG+TGG + chr5.1:47982575-47982594 MS.gene010250:intron 25.0%
!!! TAATATTTTAAATACCTCGC+TGG - chr5.1:47984877-47984896 None:intergenic 25.0%
!!! TTTAAAGCATATTTGACTTG+TGG - chr5.1:47982311-47982330 None:intergenic 25.0%
AAATATGTTTGAGTCATGGA+TGG - chr5.1:47981566-47981585 None:intergenic 30.0%
ACATATGATTATTCATGGTG+AGG + chr5.1:47982208-47982227 MS.gene010250:CDS 30.0%
ACCATGAATAATCATATGTG+AGG - chr5.1:47982207-47982226 None:intergenic 30.0%
ACGACATATTGAATCAATCA+AGG - chr5.1:47981375-47981394 None:intergenic 30.0%
ACTATTTCCCTAACAATATG+AGG - chr5.1:47983920-47983939 None:intergenic 30.0%
CTAATTTAGATGCTAACTGT+TGG - chr5.1:47982021-47982040 None:intergenic 30.0%
GATGATACATATGATGCATA+TGG + chr5.1:47982745-47982764 MS.gene010250:CDS 30.0%
GATTTATGGAACAAAAGAAC+TGG + chr5.1:47982827-47982846 MS.gene010250:intron 30.0%
TCTTGATCCTCATATTGTTA+GGG + chr5.1:47983910-47983929 MS.gene010250:intron 30.0%
TGCTTGGAAAGATATAAATG+AGG + chr5.1:47985270-47985289 MS.gene010250:CDS 30.0%
! ACCCTGTAAGTATTTCTTTT+GGG + chr5.1:47983462-47983481 MS.gene010250:intron 30.0%
! ATAGTTTTCTTTTAGCCATC+TGG - chr5.1:47984670-47984689 None:intergenic 30.0%
! ATTGATTCAATATGTCGTCT+CGG + chr5.1:47981377-47981396 MS.gene010250:CDS 30.0%
! TAATAGAATCCTTAATGGGT+AGG - chr5.1:47984956-47984975 None:intergenic 30.0%
! TATTCATGGTGAGGAAATTT+TGG + chr5.1:47982217-47982236 MS.gene010250:CDS 30.0%
! TCTCAATTTTTCGCGTTTTA+TGG + chr5.1:47985339-47985358 MS.gene010250:CDS 30.0%
! TGAACTAGAACTTTTTACCA+AGG + chr5.1:47982777-47982796 MS.gene010250:CDS 30.0%
! TGTTACTTGTTAGAGAGAAA+CGG - chr5.1:47981886-47981905 None:intergenic 30.0%
! TTAGCTTATATTGGTTACGA+GGG - chr5.1:47981931-47981950 None:intergenic 30.0%
! TTCCAAACTCTTTTTGATGT+AGG - chr5.1:47982460-47982479 None:intergenic 30.0%
! TTTAGCTTATATTGGTTACG+AGG - chr5.1:47981932-47981951 None:intergenic 30.0%
! TTTTTACCAAGGCAATTGAA+AGG + chr5.1:47982788-47982807 MS.gene010250:CDS 30.0%
!! AGTTAAAAGTGATTTTCAGG+TGG + chr5.1:47982908-47982927 MS.gene010250:intron 30.0%
!! CTTTAGAACACATGTTATCA+CGG + chr5.1:47985078-47985097 MS.gene010250:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG + chr5.1:47983585-47983604 MS.gene010250:intron 30.0%
!!! AGGTCTTACTTATTTTAGCA+AGG - chr5.1:47981714-47981733 None:intergenic 30.0%
!!! CCAGGTTTTTTCTTCATTTA+CGG - chr5.1:47981756-47981775 None:intergenic 30.0%
!!! GTTAAAAGTGATTTTCAGGT+GGG + chr5.1:47982909-47982928 MS.gene010250:intron 30.0%
!!! TCTTACTTATTTTAGCAAGG+TGG - chr5.1:47981711-47981730 None:intergenic 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG + chr5.1:47983305-47983324 MS.gene010250:intron 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG + chr5.1:47983304-47983323 MS.gene010250:intron 30.0%
AAAAAAACCCCTAAGACTCA+AGG + chr5.1:47981777-47981796 MS.gene010250:intron 35.0%
AAATATTCTCCCCAGACATT+TGG - chr5.1:47981128-47981147 None:intergenic 35.0%
AATATTCTCCCCAGACATTT+GGG - chr5.1:47981127-47981146 None:intergenic 35.0%
AGAACATGTTTGCTCATTGT+TGG + chr5.1:47985177-47985196 MS.gene010250:CDS 35.0%
AGAATTTCACCCAAATGTCT+GGG + chr5.1:47981115-47981134 MS.gene010250:CDS 35.0%
AGATGTGTTCACCAAGTTTA+AGG + chr5.1:47982115-47982134 MS.gene010250:intron 35.0%
AGCCTACATCAAAAAGAGTT+TGG + chr5.1:47982455-47982474 MS.gene010250:CDS 35.0%
ATCCATTAACCTGCAAAGAT+TGG - chr5.1:47984844-47984863 None:intergenic 35.0%
ATTTCCTTGCTAGAGAATAC+TGG - chr5.1:47982690-47982709 None:intergenic 35.0%
CACAAGAGCTATGTTGAAAA+TGG + chr5.1:47981449-47981468 MS.gene010250:CDS 35.0%
CACGGAGAACATCTTAAATT+GGG + chr5.1:47984785-47984804 MS.gene010250:CDS 35.0%
CCCCAAAAGAAATACTTACA+GGG - chr5.1:47983466-47983485 None:intergenic 35.0%
CCGTAAATGAAGAAAAAACC+TGG + chr5.1:47981753-47981772 MS.gene010250:intron 35.0%
CTTCATTTACGGATATGGTT+AGG - chr5.1:47981745-47981764 None:intergenic 35.0%
GAAGCAGTATGATATGTCTA+GGG + chr5.1:47985210-47985229 MS.gene010250:CDS 35.0%
GCATATGATTAGAGATAAGC+TGG - chr5.1:47981253-47981272 None:intergenic 35.0%
GCCTCACATATGATTATTCA+TGG + chr5.1:47982203-47982222 MS.gene010250:CDS 35.0%
GCTTATCTCTAATCATATGC+AGG + chr5.1:47981253-47981272 MS.gene010250:intron 35.0%
GTCATGGATGGATATATACT+TGG - chr5.1:47981554-47981573 None:intergenic 35.0%
GTCTTGATCCTCATATTGTT+AGG + chr5.1:47983909-47983928 MS.gene010250:intron 35.0%
TAAAGTTCGTCCAACAGTTT+AGG + chr5.1:47984160-47984179 MS.gene010250:intron 35.0%
TCAATATGCTTCAGAATCGA+TGG + chr5.1:47981151-47981170 MS.gene010250:CDS 35.0%
TGAAGCAGTATGATATGTCT+AGG + chr5.1:47985209-47985228 MS.gene010250:CDS 35.0%
TGCAAGAAAGTGACTCATTT+GGG - chr5.1:47982288-47982307 None:intergenic 35.0%
TGTCATCATAGCGAGATTTA+TGG + chr5.1:47982813-47982832 MS.gene010250:intron 35.0%
TGTGGCTAAAAAATAGGAAG+TGG - chr5.1:47983638-47983657 None:intergenic 35.0%
TTAACCGTTTGCTCGAATAA+TGG - chr5.1:47981230-47981249 None:intergenic 35.0%
TTACGGATATGGTTAGGTTT+AGG - chr5.1:47981739-47981758 None:intergenic 35.0%
TTCTGCAAGATTTCTTTGCT+TGG - chr5.1:47981099-47981118 None:intergenic 35.0%
TTTCCTTGCTAGAGAATACT+GGG - chr5.1:47982689-47982708 None:intergenic 35.0%
! ACTCTTTTTGATGTAGGCTT+TGG - chr5.1:47982454-47982473 None:intergenic 35.0%
! ATCAAGGTAACTTTTGCCAA+TGG - chr5.1:47981359-47981378 None:intergenic 35.0%
! CCCTGTAAGTATTTCTTTTG+GGG + chr5.1:47983463-47983482 MS.gene010250:intron 35.0%
! GACCCTGTAAGTATTTCTTT+TGG + chr5.1:47983461-47983480 MS.gene010250:intron 35.0%
! TAGTCTTACCTTGAGTCTTA+GGG - chr5.1:47981788-47981807 None:intergenic 35.0%
! TATATTGGTTACGAGGGTAT+AGG - chr5.1:47981925-47981944 None:intergenic 35.0%
! TTGAGAGCACGAATAAGAAA+AGG - chr5.1:47985325-47985344 None:intergenic 35.0%
!! AAGAAAAGGCATTGGAACTT+TGG - chr5.1:47985311-47985330 None:intergenic 35.0%
!! CATGTTAACTTGTGTCCTTA+GGG - chr5.1:47983442-47983461 None:intergenic 35.0%
!! GGTATAGGTTGTTGTTTATG+TGG - chr5.1:47981910-47981929 None:intergenic 35.0%
!! TCATGTTAACTTGTGTCCTT+AGG - chr5.1:47983443-47983462 None:intergenic 35.0%
!! TGATCTTTAAAGATGGTGGA+AGG + chr5.1:47982579-47982598 MS.gene010250:intron 35.0%
!! TTAGTCTTACCTTGAGTCTT+AGG - chr5.1:47981789-47981808 None:intergenic 35.0%
!! TTTTAATTGCCTGTTCGTGA+TGG + chr5.1:47984607-47984626 MS.gene010250:intron 35.0%
!!! AGTCCAAGGTTTTATTACTG+AGG + chr5.1:47984644-47984663 MS.gene010250:CDS 35.0%
AAGAAAGTGACTCATTTGGG+TGG - chr5.1:47982285-47982304 None:intergenic 40.0%
AAGAAGTAGAGCAGGAAATG+AGG + chr5.1:47983001-47983020 MS.gene010250:CDS 40.0%
ACAATCCTTTGACGTGCATA+AGG - chr5.1:47982628-47982647 None:intergenic 40.0%
ACCAAGTTTAAGGACGAACA+AGG + chr5.1:47982125-47982144 MS.gene010250:CDS 40.0%
AGAAGGGAATTGCAATTGCT+TGG + chr5.1:47985254-47985273 MS.gene010250:CDS 40.0%
AGATTGGAACACGATCAACA+AGG - chr5.1:47985435-47985454 None:intergenic 40.0%
AGCCAATCTTTGCAGGTTAA+TGG + chr5.1:47984839-47984858 MS.gene010250:CDS 40.0%
AGTCTTACCTTGAGTCTTAG+GGG - chr5.1:47981787-47981806 None:intergenic 40.0%
ATGAATCCATCGAAACCCTT+CGG - chr5.1:47984001-47984020 None:intergenic 40.0%
ATTATTCCGAAGGGTTTCGA+TGG + chr5.1:47983992-47984011 MS.gene010250:intron 40.0%
CAGAATTTCACCCAAATGTC+TGG + chr5.1:47981114-47981133 MS.gene010250:CDS 40.0%
CCACGGAGAACATCTTAAAT+TGG + chr5.1:47984784-47984803 MS.gene010250:CDS 40.0%
CCATCCATTATTCGAGCAAA+CGG + chr5.1:47981223-47981242 MS.gene010250:intron 40.0%
CGAACTGAGATTATTCCGAA+GGG + chr5.1:47983983-47984002 MS.gene010250:intron 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr5.1:47983661-47983680 None:intergenic 40.0%
CTCAAAAACTGAGATGCCAT+TGG + chr5.1:47981340-47981359 MS.gene010250:CDS 40.0%
GAATTTCACCCAAATGTCTG+GGG + chr5.1:47981116-47981135 MS.gene010250:CDS 40.0%
GACAAACCTTTCAATTGCCT+TGG - chr5.1:47982797-47982816 None:intergenic 40.0%
GACAATTACACGCATTCTGA+AGG + chr5.1:47985382-47985401 MS.gene010250:CDS 40.0%
GAGTTTGGTATCGTGTTAGT+AGG - chr5.1:47981827-47981846 None:intergenic 40.0%
GATATGGTTAGGTTTAGGCT+AGG - chr5.1:47981734-47981753 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr5.1:47983664-47983683 None:intergenic 40.0%
GCCCCAAAAGAAATACTTAC+AGG - chr5.1:47983467-47983486 None:intergenic 40.0%
GCTATTCAGGAATGTCAGAA+GGG + chr5.1:47985238-47985257 MS.gene010250:CDS 40.0%
GCTTAACATACCTTCGATGT+CGG - chr5.1:47982174-47982193 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr5.1:47983672-47983691 MS.gene010250:intron 40.0%
GTGCAAGAAAGTGACTCATT+TGG - chr5.1:47982289-47982308 None:intergenic 40.0%
GTTAAGCAAAGTCAACTGAG+TGG - chr5.1:47984054-47984073 None:intergenic 40.0%
GTTGTTTAACATGTGCCCTA+AGG + chr5.1:47983424-47983443 MS.gene010250:intron 40.0%
TAACATGTGCCTACCCATTA+AGG + chr5.1:47984944-47984963 MS.gene010250:intron 40.0%
TCCTTGTTCGTCCTTAAACT+TGG - chr5.1:47982129-47982148 None:intergenic 40.0%
TCGAACTGAGATTATTCCGA+AGG + chr5.1:47983982-47984001 MS.gene010250:intron 40.0%
TGCATGTACTCCTCTATAGT+TGG - chr5.1:47984696-47984715 None:intergenic 40.0%
TGCTATTCAGGAATGTCAGA+AGG + chr5.1:47985237-47985256 MS.gene010250:CDS 40.0%
TGGAATGGGAGAAAATACCA+CGG + chr5.1:47984767-47984786 MS.gene010250:CDS 40.0%
TGGCCTCAGTAATAAAACCT+TGG - chr5.1:47984650-47984669 None:intergenic 40.0%
TTCCTTGCTAGAGAATACTG+GGG - chr5.1:47982688-47982707 None:intergenic 40.0%
TTCGTGATGGCAGATAAAAG+TGG + chr5.1:47984620-47984639 MS.gene010250:intron 40.0%
TTTGGTATCGTGTTAGTAGG+TGG - chr5.1:47981824-47981843 None:intergenic 40.0%
! AATGCTAACTTGTGCTCTCA+AGG + chr5.1:47983145-47983164 MS.gene010250:intron 40.0%
! ACACTCAGCCTTTATTTGGT+TGG + chr5.1:47984188-47984207 MS.gene010250:intron 40.0%
! AGGAGGTGTGGCTAAAAAAT+AGG - chr5.1:47983644-47983663 None:intergenic 40.0%
! ATGCTAACTTGTGCTCTCAA+GGG + chr5.1:47983146-47983165 MS.gene010250:intron 40.0%
! CCAATTTAAGATGTTCTCCG+TGG - chr5.1:47984787-47984806 None:intergenic 40.0%
! GCACGAATAAGAAAAGGCAT+TGG - chr5.1:47985319-47985338 None:intergenic 40.0%
! TACTTGTTAGAGAGAAACGG+TGG - chr5.1:47981883-47981902 None:intergenic 40.0%
! TGTTTTCGAAGAAGTAGAGC+AGG + chr5.1:47982993-47983012 MS.gene010250:CDS 40.0%
! TTTTATCTGCCATCACGAAC+AGG - chr5.1:47984619-47984638 None:intergenic 40.0%
!! AAAGGCATTGGAACTTTGGT+TGG - chr5.1:47985307-47985326 None:intergenic 40.0%
!! GGAAATTTTGGAAGAGGCAT+TGG + chr5.1:47982229-47982248 MS.gene010250:CDS 40.0%
!! GTTTTATTACTGAGGCCAGA+TGG + chr5.1:47984652-47984671 MS.gene010250:CDS 40.0%
!! TGGTGAGGAAATTTTGGAAG+AGG + chr5.1:47982223-47982242 MS.gene010250:CDS 40.0%
!! TTAAAGATGGTGGAAGGAGT+TGG + chr5.1:47982585-47982604 MS.gene010250:intron 40.0%
!!! CTGTGCTATTTAGGGTTTTG+AGG + chr5.1:47981507-47981526 MS.gene010250:CDS 40.0%
!!! GTCTTAGGGGTTTTTTTTCC+AGG - chr5.1:47981774-47981793 None:intergenic 40.0%
!!! TTCTTTTGGGGCACTAGTTA+AGG + chr5.1:47983475-47983494 MS.gene010250:intron 40.0%
!!! TTTAGGGTTTTGAGGCAACA+AGG + chr5.1:47981515-47981534 MS.gene010250:CDS 40.0%
AACTGCCTTATGCACGTCAA+AGG + chr5.1:47982620-47982639 MS.gene010250:CDS 45.0%
AGACTAATCACCGACATCGA+AGG + chr5.1:47982161-47982180 MS.gene010250:CDS 45.0%
AGATTTCTTTGCTTGGCGTC+AGG - chr5.1:47981092-47981111 None:intergenic 45.0%
AGTAGAGTTTCATCACGCGA+AGG - chr5.1:47982401-47982420 None:intergenic 45.0%
AGTGTTCGCTCCTAAACTGT+TGG - chr5.1:47984173-47984192 None:intergenic 45.0%
ATAGCACAGCGAGAGAGTAA+AGG - chr5.1:47981496-47981515 None:intergenic 45.0%
ATCATTACCTAGTGCCCTAG+AGG + chr5.1:47983806-47983825 MS.gene010250:intron 45.0%
CAGATAAAAGTGGCAGTCCA+AGG + chr5.1:47984630-47984649 MS.gene010250:intron 45.0%
CAGGTGGGATATTAGCATCT+TGG + chr5.1:47982924-47982943 MS.gene010250:intron 45.0%
CTATCCACAAGAACTTGCCT+AGG + chr5.1:47982336-47982355 MS.gene010250:CDS 45.0%
GAGCAGGAAATGAGGAAAGA+AGG + chr5.1:47983009-47983028 MS.gene010250:CDS 45.0%
GATTTCTTTGCTTGGCGTCA+GGG - chr5.1:47981091-47981110 None:intergenic 45.0%
GCGAACACTCAGCCTTTATT+TGG + chr5.1:47984184-47984203 MS.gene010250:intron 45.0%
GGTCATGCTAACAACCTCTA+GGG - chr5.1:47983823-47983842 None:intergenic 45.0%
TATCGTGTTAGTAGGTGGCT+AGG - chr5.1:47981819-47981838 None:intergenic 45.0%
TGGTCATGCTAACAACCTCT+AGG - chr5.1:47983824-47983843 None:intergenic 45.0%
TGTTAGTAGGTGGCTAGGAT+GGG - chr5.1:47981814-47981833 None:intergenic 45.0%
! CCGTTTGCTCGAATAATGGA+TGG - chr5.1:47981226-47981245 None:intergenic 45.0%
! GGATTGTCGAATGTTGCTTC+TGG + chr5.1:47982641-47982660 MS.gene010250:CDS 45.0%
! GTGAGGTTGCATCTAGAGTT+TGG - chr5.1:47981842-47981861 None:intergenic 45.0%
! TAACCTGCAAAGATTGGCTG+CGG - chr5.1:47984838-47984857 None:intergenic 45.0%
!! ACTCTCTCGCTGTGCTATTT+AGG + chr5.1:47981498-47981517 MS.gene010250:CDS 45.0%
!! CTCTCTCGCTGTGCTATTTA+GGG + chr5.1:47981499-47981518 MS.gene010250:CDS 45.0%
!! TCATCTCTTTCTGAGGTGTG+AGG - chr5.1:47981859-47981878 None:intergenic 45.0%
!!! TATATTATAGATATTTTTTT+TGG - chr5.1:47984901-47984920 None:intergenic 5.0%
!!! TTTTAACTTTTTTAAATATA+GGG - chr5.1:47982896-47982915 None:intergenic 5.0%
AGCCACACCTCCTTGAATTG+TGG + chr5.1:47983651-47983670 MS.gene010250:intron 50.0%
AGCCCCAGTATTCTCTAGCA+AGG + chr5.1:47982683-47982702 MS.gene010250:CDS 50.0%
CAAGAACTTGCCTAGGCTAG+AGG + chr5.1:47982343-47982362 MS.gene010250:CDS 50.0%
CGGTGGATCATCTCTTTCTG+AGG - chr5.1:47981866-47981885 None:intergenic 50.0%
CTAGCCTAGGCAAGTTCTTG+TGG - chr5.1:47982343-47982362 None:intergenic 50.0%
GGATGAAATTGTCTCCAGCG+AGG + chr5.1:47984860-47984879 MS.gene010250:CDS 50.0%
GTCTAGGGAAGCTGCTATTC+AGG + chr5.1:47985225-47985244 MS.gene010250:CDS 50.0%
GTGACTCATTTGGGTGGCAA+TGG - chr5.1:47982279-47982298 None:intergenic 50.0%
GTGTTAGTAGGTGGCTAGGA+TGG - chr5.1:47981815-47981834 None:intergenic 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr5.1:47983656-47983675 None:intergenic 50.0%
! GCTGCGGCACGAACAATTTT+TGG - chr5.1:47984822-47984841 None:intergenic 50.0%
!! CTAACAACCTCTAGGGCACT+AGG - chr5.1:47983816-47983835 None:intergenic 50.0%
! TTTGGGTGGCAATGGACTCG+AGG - chr5.1:47982271-47982290 None:intergenic 55.0%
GTGCCGCAGCCAATCTTTGC+AGG + chr5.1:47984832-47984851 MS.gene010250:CDS 60.0%
TACCGTCGTGCCTCTAGCCT+AGG - chr5.1:47982356-47982375 None:intergenic 60.0%
! GGCAATGGACTCGAGGTGAG+TGG - chr5.1:47982264-47982283 None:intergenic 60.0%
! TGCCTAGGCTAGAGGCACGA+CGG + chr5.1:47982351-47982370 MS.gene010250:CDS 60.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 47981065 47985456 47981065 ID=MS.gene010250
chr5.1 mRNA 47981065 47985456 47981065 ID=MS.gene010250.t1;Parent=MS.gene010250
chr5.1 exon 47981065 47981172 47981065 ID=MS.gene010250.t1.exon1;Parent=MS.gene010250.t1
chr5.1 CDS 47981065 47981172 47981065 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47981275 47981554 47981275 ID=MS.gene010250.t1.exon2;Parent=MS.gene010250.t1
chr5.1 CDS 47981275 47981554 47981275 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47982117 47982489 47982117 ID=MS.gene010250.t1.exon3;Parent=MS.gene010250.t1
chr5.1 CDS 47982117 47982489 47982117 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47982591 47982809 47982591 ID=MS.gene010250.t1.exon4;Parent=MS.gene010250.t1
chr5.1 CDS 47982591 47982809 47982591 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47982927 47983065 47982927 ID=MS.gene010250.t1.exon5;Parent=MS.gene010250.t1
chr5.1 CDS 47982927 47983065 47982927 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47984633 47984881 47984633 ID=MS.gene010250.t1.exon6;Parent=MS.gene010250.t1
chr5.1 CDS 47984633 47984881 47984633 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
chr5.1 exon 47985163 47985456 47985163 ID=MS.gene010250.t1.exon7;Parent=MS.gene010250.t1
chr5.1 CDS 47985163 47985456 47985163 ID=cds.MS.gene010250.t1;Parent=MS.gene010250.t1
Gene Sequence

>MS.gene010250

ATGTCTACTGTAGCTTACTCTAACCCTGACGCCAAGCAAAGAAATCTTGCAGAATTTCACCCAAATGTCTGGGGAGAATATTTCATTCAATATGCTTCAGAATCGATGGTAAATATATATTGCTATTTCCACTAATTGGTTATGATATTATAAATGTTCCATCCATTATTCGAGCAAACGGTTAACCAGCTTATCTCTAATCATATGCAGGAACTTGATCAGAATATTGCAGCACAAATCGTTAAATTAAAAGATGAAGTGAGAAACATGCTTGTCTCAAAAACTGAGATGCCATTGGCAAAAGTTACCTTGATTGATTCAATATGTCGTCTCGGTGTTAGTTATCATTTTGAAAACGAGATTGACGAACTTTTGCAACATTTTCACAAGAGCTATGTTGAAAATGGAGAAATAGTTCTTGAAGACAGCCTTTACTCTCTCGCTGTGCTATTTAGGGTTTTGAGGCAACAAGGATTTTATGTTTCACCAAGTATATATCCATCCATGACTCAAACATATTTTATTTACATTTTTATTTCTTTATGAAAAAGATGTGAAAAACACTAAGATTACAATTTGTAAAAAATATTGAATAATGTCGACAATAGGAAATGAATTATGTCAACAAATTGCTCAAAATCAACCACCTTGCTAAAATAAGTAAGACCTAGCCTAAACCTAACCATATCCGTAAATGAAGAAAAAACCTGGAAAAAAAACCCCTAAGACTCAAGGTAAGACTAACGCCCATCCTAGCCACCTACTAACACGATACCAAACTCTAGATGCAACCTCACACCTCAGAAAGAGATGATCCACCGTTTCTCTCTAACAAGTAACAACCACATAAACAACAACCTATACCCTCGTAACCAATATAAGCTAAAAAAAATGTTGTCAAACAGACCCTTAGTACACAAAAAATTATGTGTGACTCAAATTATTTTTCATTTCCAACAGTTAGCATCTAAATTAGATACAAAATAATTTAGTTGATTATTTTTTTATGCGACTAATGGTTTTTAAATGTTTTTTCTTTATAAACACTCTAGATGTGTTCACCAAGTTTAAGGACGAACAAGGAAACTTTAATAAAAGACTAATCACCGACATCGAAGGTATGTTAAGCTTGTATGAAGCCTCACATATGATTATTCATGGTGAGGAAATTTTGGAAGAGGCATTGGCTTTTACGTCCACTCACCTCGAGTCCATTGCCACCCAAATGAGTCACTTTCTTGCACCACAAGTCAAATATGCTTTAAAACAGGCTATCCACAAGAACTTGCCTAGGCTAGAGGCACGACGGTACATTTCTATTTATGAGCAAAATCCTTCGCGTGATGAAACTCTACTCACTTTTGCGAAATTAGATTTTAATTTACTCCAAAGCCTACATCAAAAAGAGTTTGGAAACATTTGCAAGTAAGTACTTCAATCATACACTCAGATTCTTTGTAACAAAACAAAATTAAAGTGGTCATATCCTGTTAATAACTTTTTTATATTGATTTTGATCTTTAAAGATGGTGGAAGGAGTTGGACTTCTCTAGTAAACTGCCTTATGCACGTCAAAGGATTGTCGAATGTTGCTTCTGGATTTTGACTGCATATTTTGAGCCCCAGTATTCTCTAGCAAGGAAATTAGCGACGAAAGTAATCGCGATGTTATCAATCATTGATGATACATATGATGCATATGGAACCATTGATGAACTAGAACTTTTTACCAAGGCAATTGAAAGGTTTGTCATCATAGCGAGATTTATGGAACAAAAGAACTGGAACATATATTTGCATTTCTCCCCTGCTTATAAAAAATATTTTTCCCTATATTTAAAAAAGTTAAAAGTGATTTTCAGGTGGGATATTAGCATCTTGGATGATCTCCCAGACTACATGAAATTAATTTATGGAACACTCTGGAATGTTTTCGAAGAAGTAGAGCAGGAAATGAGGAAAGAAGGAAAGCTCTATACCATGAAGTACTTTATAAAAGAAGTATGAGTTTGTGCTTTCTCTAATTAATTATTAGCAACAAAACATGAGCAATAACTTATTTATACATATAAGTATGACAAATGCTAACTTGTGCTCTCAAGGGCACATATTAAGATACTCCCTCCGTTTCAAAATATATATAAGCAAAATTTACTTTTTAGGTTCATTCATTTAATGATGTATGTGGTCCATATTATGAACCACATATATCATTAAATGAATGAACCTAAAAAGAATTTTGCTTATATTTTGAAACGGAGGGAGTACTTATTATAGAAATACACATATCAAAAGACGTGCATTCAACTTCTTAAAAGTTGTCCTATTGTGTTTTCCAATACAAAATTACTCTTTTTAGGTTGTTTAACATGTGCCCTAAGGACACAAGTTAACATGACCCTGTAAGTATTTCTTTTGGGGCACTAGTTAAGGATACTTAATAAAGTAAAACAACATTGAAACTTGTGTAGTCAATGTTTATAAAATGGAAAATGTTATTTCTCTAGAAAAATAGCATCAAGAATTTTTCAAGACACATGTGGTAAGTTTTAATTGCATGATTTATTTGTCCACTTCCTATTTTTTAGCCACACCTCCTTGAATTGTGGCAAATAGTGCATTGTGATTGGCTACTCTTTATTCTTGAAGAATTCTTGATGTTTTTTTTTCTTGATAAATAGCATTGCTCTTATGAAATACTATAAAAAGTGTTGTGTTCATGCAAAAGTTTTTTTTTTTTTATCATTACCTAGTGCCCTAGAGGTTGTTAGCATGACCATTTATTTTAATAAGAACAATCAATAAATCAGCACGAGATTGTATCAATTTTAATGATAATATTTTGTCTTGATCCTCATATTGTTAGGGAAATAGTGAATTGATAATCTAGCTGATTAAGAATTGTTTAAATTATGATTCGAACTGAGATTATTCCGAAGGGTTTCGATGGATTCATCCTTAAATGAATCTTATTAATCACTTAAGACCACTCAGTTGACTTTGCTTAACTCAACTATTAAACATAGTTGTCATTTATGTTTCTTTCTTTTTAACGCAGTCATTTATGTTTCATAATGTCTTGTTAGTTTAGGAGTTAAAGTTCGTCCAACAGTTTAGGAGCGAACACTCAGCCTTTATTTGGTTGGAAACAAATTTAATTCTAATTTTGTGAAGGAATTTTTTGTACACAATTTATTTTGTGAAGTTAAGAAACTTAACATTATTTGGTTGGAAACAAATTTAATTCTAATTTTGTGAAGGAATTTTTTGTACACAAATTATTTTGTGAAGTTAAGAAACTTAACATTATTTTGGTACATATAAGAGAGATCAAATTACACTTGCATATAATACTTGAGTACAGTCCTCCTTGATAAATTAATCAATTTGTGTACATTTACTATAAATTTCATGGATTAATTTAAAGTTTATATCTATGCAATTTGTGCTCATTATGAGTATGTAAACTGAATTACGTTGTGAAAGAAGTATGATTTTTCATTATTAATTATTAAGAAATGAGTATCTTCTTAATTCTATTGTTTTAATTGCCTGTTCGTGATGGCAGATAAAAGTGGCAGTCCAAGGTTTTATTACTGAGGCCAGATGGCTAAAAGAAAACTATATACCAACTATAGAGGAGTACATGCACAAATCAACAAAATCATCTTGTTACACTTTGTTGATATTAACTTCTTACATTGGAATGGGAGAAAATACCACGGAGAACATCTTAAATTGGGTAACAAATGAACCAAAAATTGTTCGTGCCGCAGCCAATCTTTGCAGGTTAATGGATGAAATTGTCTCCAGCGAGGTATTTAAAATATTATCCAAAAAAAATATCTATAATATAATTATATATTTTATGGGAATTGCTAACATGTGCCTACCCATTAAGGATTCTATTACTAGAAATTATGTATTGAAAATTATGCCGCTTAATTTCAACAAAAGTATAATATTAATTTTTCTTAAAGAATGCTTTCTATTAATAGAAACTTTAACATGTTCTTTAGAACACATGTTATCACGGCCCTTATTTTATTTCACACGATATAAATTAAATATTAGCGTTAATTATTTCTTGGTGTACAGTTTGAGCATAAAAGAGAACATGTTTGCTCATTGTTGGATTGCTACATGAAGCAGTATGATATGTCTAGGGAAGCTGCTATTCAGGAATGTCAGAAGGGAATTGCAATTGCTTGGAAAGATATAAATGAGGAATGTCTTAGACCAACCAAAGTTCCAATGCCTTTTCTTATTCGTGCTCTCAATTTTTCGCGTTTTATGGATGTGATTTACAAAGATAAAGACAATTACACGCATTCTGAAGGACTTATGAAGATGTATGTCAAAGAAGTCCTTGTTGATCGTGTTCCAATCTAA
Protein sequence

>MS.gene010250.t1

MSTVAYSNPDAKQRNLAEFHPNVWGEYFIQYASESMELDQNIAAQIVKLKDEVRNMLVSKTEMPLAKVTLIDSICRLGVSYHFENEIDELLQHFHKSYVENGEIVLEDSLYSLAVLFRVLRQQGFYVSPNVFTKFKDEQGNFNKRLITDIEGMLSLYEASHMIIHGEEILEEALAFTSTHLESIATQMSHFLAPQVKYALKQAIHKNLPRLEARRYISIYEQNPSRDETLLTFAKLDFNLLQSLHQKEFGNICKWWKELDFSSKLPYARQRIVECCFWILTAYFEPQYSLARKLATKVIAMLSIIDDTYDAYGTIDELELFTKAIERWDISILDDLPDYMKLIYGTLWNVFEEVEQEMRKEGKLYTMKYFIKEIKVAVQGFITEARWLKENYIPTIEEYMHKSTKSSCYTLLILTSYIGMGENTTENILNWVTNEPKIVRAAANLCRLMDEIVSSEFEHKREHVCSLLDCYMKQYDMSREAAIQECQKGIAIAWKDINEECLRPTKVPMPFLIRALNFSRFMDVIYKDKDNYTHSEGLMKMYVKEVLVDRVPI