Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010381.t1 | XP_003611770.1 | 94.8 | 194 | 9 | 1 | 1 | 194 | 1 | 193 | 4.60E-99 | 370.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010381.t1 | Q9LQU4 | 63.4 | 145 | 44 | 3 | 52 | 194 | 15 | 152 | 8.9e-51 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010381.t1 | G7K803 | 94.8 | 194 | 9 | 1 | 1 | 194 | 1 | 193 | 3.3e-99 | 370.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene29964 | MS.gene010381 | PPI |
| MS.gene020495 | MS.gene010381 | PPI |
| MS.gene010381 | MS.gene29965 | PPI |
| MS.gene020496 | MS.gene010381 | PPI |
| MS.gene010381 | MS.gene047654 | PPI |
| MS.gene041113 | MS.gene010381 | PPI |
| MS.gene010381 | MS.gene015684 | PPI |
| MS.gene010381 | MS.gene015683 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010381.t1 | MTR_5g017650 | 97.938 | 194 | 3 | 1 | 1 | 194 | 1 | 193 | 2.73e-139 | 386 |
| MS.gene010381.t1 | MTR_8g104870 | 90.052 | 191 | 15 | 2 | 5 | 194 | 4 | 191 | 8.05e-111 | 314 |
| MS.gene010381.t1 | MTR_8g104890 | 59.794 | 194 | 53 | 5 | 1 | 194 | 1 | 169 | 9.04e-62 | 189 |
| MS.gene010381.t1 | MTR_4g086330 | 51.449 | 138 | 64 | 1 | 52 | 189 | 63 | 197 | 4.16e-47 | 153 |
| MS.gene010381.t1 | MTR_4g086320 | 54.386 | 114 | 49 | 1 | 52 | 165 | 50 | 160 | 7.45e-39 | 131 |
| MS.gene010381.t1 | MTR_8g104830 | 46.897 | 145 | 67 | 5 | 53 | 194 | 9 | 146 | 7.61e-39 | 130 |
| MS.gene010381.t1 | MTR_6g084940 | 39.506 | 162 | 84 | 4 | 33 | 194 | 2 | 149 | 2.21e-28 | 103 |
| MS.gene010381.t1 | MTR_2g101660 | 38.793 | 116 | 68 | 1 | 53 | 168 | 33 | 145 | 7.50e-25 | 95.5 |
| MS.gene010381.t1 | MTR_1g075550 | 50.407 | 123 | 53 | 3 | 46 | 168 | 9 | 123 | 8.47e-25 | 94.4 |
| MS.gene010381.t1 | MTR_2g101660 | 34.146 | 123 | 81 | 0 | 72 | 194 | 1 | 123 | 6.72e-21 | 84.0 |
| MS.gene010381.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 82 | 220 | 7.99e-16 | 73.2 |
| MS.gene010381.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 40 | 178 | 9.64e-16 | 72.0 |
| MS.gene010381.t1 | MTR_5g008240 | 35.294 | 153 | 70 | 8 | 52 | 189 | 106 | 244 | 1.49e-15 | 72.8 |
| MS.gene010381.t1 | MTR_5g008240 | 38.318 | 107 | 51 | 5 | 68 | 159 | 35 | 141 | 4.87e-12 | 62.0 |
| MS.gene010381.t1 | MTR_0172s0050 | 31.373 | 153 | 61 | 8 | 40 | 158 | 55 | 197 | 2.73e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010381.t1 | AT1G14870 | 61.184 | 152 | 50 | 3 | 45 | 194 | 8 | 152 | 2.66e-62 | 190 |
| MS.gene010381.t1 | AT5G35525 | 59.333 | 150 | 52 | 3 | 47 | 194 | 10 | 152 | 1.69e-57 | 178 |
| MS.gene010381.t1 | AT1G14870 | 65.289 | 121 | 39 | 1 | 45 | 165 | 8 | 125 | 1.47e-54 | 170 |
| MS.gene010381.t1 | AT1G14880 | 55.769 | 156 | 60 | 3 | 41 | 194 | 3 | 151 | 4.93e-53 | 167 |
| MS.gene010381.t1 | AT1G49030 | 51.200 | 125 | 58 | 1 | 52 | 176 | 87 | 208 | 1.92e-41 | 139 |
| MS.gene010381.t1 | AT1G68610 | 52.740 | 146 | 61 | 4 | 52 | 194 | 18 | 158 | 1.20e-40 | 135 |
| MS.gene010381.t1 | AT3G18470 | 49.587 | 121 | 58 | 1 | 52 | 172 | 4 | 121 | 1.44e-39 | 132 |
| MS.gene010381.t1 | AT3G18460 | 50.420 | 119 | 55 | 2 | 53 | 171 | 54 | 168 | 1.47e-36 | 126 |
| MS.gene010381.t1 | AT3G18450 | 37.736 | 159 | 75 | 3 | 14 | 172 | 33 | 167 | 2.36e-34 | 120 |
| MS.gene010381.t1 | AT1G58320 | 44.056 | 143 | 70 | 4 | 52 | 194 | 16 | 148 | 4.90e-30 | 108 |
| MS.gene010381.t1 | AT1G68630 | 40.141 | 142 | 76 | 3 | 53 | 194 | 29 | 161 | 2.94e-27 | 101 |
| MS.gene010381.t1 | AT1G52200 | 38.333 | 120 | 71 | 1 | 53 | 172 | 53 | 169 | 8.16e-25 | 95.9 |
| MS.gene010381.t1 | AT1G52200 | 38.053 | 113 | 67 | 1 | 53 | 165 | 53 | 162 | 1.33e-21 | 87.8 |
| MS.gene010381.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.14e-16 | 72.4 |
| MS.gene010381.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.14e-16 | 72.4 |
| MS.gene010381.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.14e-16 | 72.4 |
| MS.gene010381.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.14e-16 | 72.4 |
| MS.gene010381.t1 | AT2G40935 | 36.585 | 123 | 58 | 6 | 52 | 158 | 46 | 164 | 8.14e-16 | 72.4 |
| MS.gene010381.t1 | AT2G40935 | 37.069 | 116 | 53 | 6 | 62 | 158 | 39 | 153 | 3.00e-14 | 68.2 |
| MS.gene010381.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.70e-13 | 64.3 |
| MS.gene010381.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.70e-13 | 64.3 |
| MS.gene010381.t1 | AT2G40935 | 37.736 | 106 | 49 | 5 | 69 | 158 | 36 | 140 | 6.70e-13 | 64.3 |
| MS.gene010381.t1 | AT2G45010 | 28.889 | 135 | 64 | 4 | 53 | 158 | 62 | 193 | 1.26e-11 | 62.0 |
| MS.gene010381.t1 | AT2G45010 | 28.889 | 135 | 64 | 4 | 53 | 158 | 16 | 147 | 1.27e-11 | 61.2 |
Find 53 sgRNAs with CRISPR-Local
Find 79 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCTGGCTTTCCTTGTTC+TGG | 0.299814 | 5.4:-10800819 | None:intergenic |
| TGGTGTCCATGTATCACTTT+TGG | 0.308941 | 5.4:+10801148 | MS.gene010381:CDS |
| ACATTGATTTGTTGTGTGAT+TGG | 0.360755 | 5.4:+10801568 | MS.gene010381:CDS |
| GGTTTAGGCGGAGGAGGAGG+AGG | 0.361290 | 5.4:-10800930 | None:intergenic |
| TTTCAGGTTGCATAACGTTC+TGG | 0.367290 | 5.4:+10801128 | MS.gene010381:intron |
| CATTGATTTGTTGTGTGATT+GGG | 0.387322 | 5.4:+10801569 | MS.gene010381:CDS |
| ATACCTGTGGCTGCTGCTGC+TGG | 0.389577 | 5.4:-10800849 | None:intergenic |
| CGTGGATTTAACATGGTCAT+TGG | 0.401841 | 5.4:+10801733 | MS.gene010381:CDS |
| GTTTGTATTCTTGCTTCTAT+CGG | 0.402902 | 5.4:+10801599 | MS.gene010381:CDS |
| GGCTTTCCTTGTTCTGGTGG+TGG | 0.406957 | 5.4:-10800813 | None:intergenic |
| TTTAGGCGGAGGAGGAGGAG+GGG | 0.411929 | 5.4:-10800928 | None:intergenic |
| TGTCAATGATTTCTGCAACT+TGG | 0.449101 | 5.4:-10801171 | None:intergenic |
| CTCATGCCATGTTCAACTGC+TGG | 0.450375 | 5.4:-10801939 | None:intergenic |
| GCTGCTGGTTGATTGTATGC+TGG | 0.453996 | 5.4:-10800834 | None:intergenic |
| TTGCAGCATGTGGTGCTAGT+GGG | 0.454314 | 5.4:+10801536 | MS.gene010381:intron |
| AGAGGTTTAGGCGGAGGAGG+AGG | 0.475269 | 5.4:-10800933 | None:intergenic |
| CGCCTAAACCTCTAGTTGAA+TGG | 0.476264 | 5.4:+10800943 | MS.gene010381:CDS |
| ACTAGAGGTTTAGGCGGAGG+AGG | 0.486722 | 5.4:-10800936 | None:intergenic |
| GCTGGCTTTCCTTGTTCTGG+TGG | 0.504189 | 5.4:-10800816 | None:intergenic |
| AACATGGCATGAGCCGTTGA+AGG | 0.508025 | 5.4:+10801949 | MS.gene010381:CDS |
| GACCATTCAACTAGAGGTTT+AGG | 0.514640 | 5.4:-10800945 | None:intergenic |
| GCGACAACAATACGGTTTGA+AGG | 0.520833 | 5.4:+10801630 | MS.gene010381:CDS |
| GTAGTGCTGTTGTAGCTCAC+TGG | 0.527040 | 5.4:-10800873 | None:intergenic |
| TCAAAGATGCGACAACAATA+CGG | 0.532365 | 5.4:+10801622 | MS.gene010381:CDS |
| TCAACTAGAGGTTTAGGCGG+AGG | 0.533656 | 5.4:-10800939 | None:intergenic |
| GTTTAGGCGGAGGAGGAGGA+GGG | 0.534825 | 5.4:-10800929 | None:intergenic |
| GGCGTAATCTGATGAGGCAC+CGG | 0.545196 | 5.4:-10800907 | None:intergenic |
| TTTGCAGCATGTGGTGCTAG+TGG | 0.546904 | 5.4:+10801535 | MS.gene010381:intron |
| CGACAACAATACGGTTTGAA+GGG | 0.563752 | 5.4:+10801631 | MS.gene010381:CDS |
| TGCAGCATGTGGTGCTAGTG+GGG | 0.567597 | 5.4:+10801537 | MS.gene010381:intron |
| AGAGCAGCAATCACAAAGAC+CGG | 0.571890 | 5.4:-10800970 | None:intergenic |
| CCTCTAGTTGAATGGTCCAC+CGG | 0.573579 | 5.4:+10800951 | MS.gene010381:CDS |
| CTTGATTCATTGCTGCTGCG+AGG | 0.576909 | 5.4:+10801672 | MS.gene010381:CDS |
| CAATGACCATGTTAAATCCA+CGG | 0.577254 | 5.4:-10801732 | None:intergenic |
| ACTTGGCCAAAAGTGATACA+TGG | 0.588100 | 5.4:-10801154 | None:intergenic |
| CAACCAGCAGCAGCAGCCAC+AGG | 0.601150 | 5.4:+10800846 | MS.gene010381:CDS |
| AATGTTGAGCAACGGACTAG+AGG | 0.608581 | 5.4:+10801888 | MS.gene010381:CDS |
| GTTGCAGAAATCATTGACAA+AGG | 0.613366 | 5.4:+10801175 | MS.gene010381:CDS |
| CCGGTGGACCATTCAACTAG+AGG | 0.613837 | 5.4:-10800951 | None:intergenic |
| AGCACTACATCAGCGTACTC+CGG | 0.618111 | 5.4:+10800888 | MS.gene010381:CDS |
| CTCACGATATTCTTGACACA+AGG | 0.619435 | 5.4:-10801701 | None:intergenic |
| TTGGAATGGATAGGGTGGCA+TGG | 0.622573 | 5.4:+10801864 | MS.gene010381:intron |
| CATTCAACTAGAGGTTTAGG+CGG | 0.628932 | 5.4:-10800942 | None:intergenic |
| TGAAAACCGTGGATTTAACA+TGG | 0.630548 | 5.4:+10801726 | MS.gene010381:CDS |
| ATGTATCCACCACCAGAACA+AGG | 0.630755 | 5.4:+10800807 | MS.gene010381:CDS |
| GGCATGGTAATGTTGAGCAA+CGG | 0.640031 | 5.4:+10801880 | MS.gene010381:CDS |
| AGGAGGGGCGTAATCTGATG+AGG | 0.643098 | 5.4:-10800913 | None:intergenic |
| ACAGCTCCAGCAGTTGAACA+TGG | 0.645065 | 5.4:+10801933 | MS.gene010381:CDS |
| GTAGCTCACTGGAATACCTG+TGG | 0.652121 | 5.4:-10800862 | None:intergenic |
| ACGGACTAGAGGAATAGCAA+TGG | 0.686509 | 5.4:+10801899 | MS.gene010381:CDS |
| GCAGCAATCACAAAGACCGG+TGG | 0.689468 | 5.4:-10800967 | None:intergenic |
| TATCGTGAGCTTGAAAACCG+TGG | 0.692905 | 5.4:+10801715 | MS.gene010381:CDS |
| TAGAAGCAAGAATACAAACA+AGG | 0.701719 | 5.4:-10801595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATATTTATATATTTT+TGG | + | chr5.4:10801346-10801365 | MS.gene010381:intron | 0.0% |
| !! | TAATAGAAATAAGTTATTAA+TGG | + | chr5.4:10801467-10801486 | MS.gene010381:intron | 10.0% |
| !!! | TAATATAATTAGTTTAGTAA+AGG | - | chr5.4:10801031-10801050 | None:intergenic | 10.0% |
| !! | ATTGATGTTAAACAAATTAT+AGG | + | chr5.4:10801254-10801273 | MS.gene010381:intron | 15.0% |
| !!! | ATTTGTTATTAGAAATGAAT+AGG | - | chr5.4:10801217-10801236 | None:intergenic | 15.0% |
| !!! | TGTATTAATTAATTTTCACT+TGG | + | chr5.4:10801083-10801102 | MS.gene010381:intron | 15.0% |
| !! | AGAAACAAATACTAAACTAA+TGG | - | chr5.4:10801789-10801808 | None:intergenic | 20.0% |
| !!! | AAAGAGCACTTTTATTAAAT+TGG | - | chr5.4:10801297-10801316 | None:intergenic | 20.0% |
| !!! | AAGAGCACTTTTATTAAATT+GGG | - | chr5.4:10801296-10801315 | None:intergenic | 20.0% |
| !!! | ATAAAATTTGCATTTTGGAA+TGG | + | chr5.4:10801850-10801869 | MS.gene010381:intron | 20.0% |
| !!! | TAGCTATAAAATTTGCATTT+TGG | + | chr5.4:10801845-10801864 | MS.gene010381:intron | 20.0% |
| !!! | TTAGTTTAGTATTTGTTTCT+TGG | + | chr5.4:10801789-10801808 | MS.gene010381:intron | 20.0% |
| ! | AATTGTTGTGATTCAACTTA+AGG | + | chr5.4:10801501-10801520 | MS.gene010381:intron | 25.0% |
| !! | ATTCAACTTAAGGATTTTTG+TGG | + | chr5.4:10801511-10801530 | MS.gene010381:intron | 25.0% |
| !!! | TTGCATATCTAATTTGTTTC+AGG | + | chr5.4:10801112-10801131 | MS.gene010381:intron | 25.0% |
| ATAGTTATATAGCTAGCTGT+AGG | - | chr5.4:10801062-10801081 | None:intergenic | 30.0% | |
| GCAGAAAAGATTGAAAACAA+TGG | - | chr5.4:10801815-10801834 | None:intergenic | 30.0% | |
| GTTTGTATTCTTGCTTCTAT+CGG | + | chr5.4:10801599-10801618 | MS.gene010381:CDS | 30.0% | |
| TAGAAGCAAGAATACAAACA+AGG | - | chr5.4:10801598-10801617 | None:intergenic | 30.0% | |
| ! | ATTTGACTTCTTTGATGTGA+TGG | + | chr5.4:10801426-10801445 | MS.gene010381:intron | 30.0% |
| !! | ACATTGATTTGTTGTGTGAT+TGG | + | chr5.4:10801568-10801587 | MS.gene010381:CDS | 30.0% |
| !! | CATTGATTTGTTGTGTGATT+GGG | + | chr5.4:10801569-10801588 | MS.gene010381:CDS | 30.0% |
| !!! | ATTTGCATTTTGGAATGGAT+AGG | + | chr5.4:10801855-10801874 | MS.gene010381:intron | 30.0% |
| !!! | TTTGCATTTTGGAATGGATA+GGG | + | chr5.4:10801856-10801875 | MS.gene010381:intron | 30.0% |
| ATGAATAGGTGTCTTACAAG+TGG | - | chr5.4:10801203-10801222 | None:intergenic | 35.0% | |
| ATTACCACATGATACTTGCA+AGG | + | chr5.4:10801399-10801418 | MS.gene010381:intron | 35.0% | |
| CAATGACCATGTTAAATCCA+CGG | - | chr5.4:10801735-10801754 | None:intergenic | 35.0% | |
| GTTGCAGAAATCATTGACAA+AGG | + | chr5.4:10801175-10801194 | MS.gene010381:CDS | 35.0% | |
| TAATCCTTGCAAGTATCATG+TGG | - | chr5.4:10801406-10801425 | None:intergenic | 35.0% | |
| TCAAAGATGCGACAACAATA+CGG | + | chr5.4:10801622-10801641 | MS.gene010381:CDS | 35.0% | |
| TGAAAACCGTGGATTTAACA+TGG | + | chr5.4:10801726-10801745 | MS.gene010381:CDS | 35.0% | |
| TGTCAATGATTTCTGCAACT+TGG | - | chr5.4:10801174-10801193 | None:intergenic | 35.0% | |
| !!! | ACTTTTTCTAGGATCAGATG+AGG | - | chr5.4:10800997-10801016 | None:intergenic | 35.0% |
| !!! | ATGAGCGACTTACTTTTTCT+AGG | - | chr5.4:10801008-10801027 | None:intergenic | 35.0% |
| ACTTGGCCAAAAGTGATACA+TGG | - | chr5.4:10801157-10801176 | None:intergenic | 40.0% | |
| CATTCAACTAGAGGTTTAGG+CGG | - | chr5.4:10800945-10800964 | None:intergenic | 40.0% | |
| CGACAACAATACGGTTTGAA+GGG | + | chr5.4:10801631-10801650 | MS.gene010381:CDS | 40.0% | |
| CGTGGATTTAACATGGTCAT+TGG | + | chr5.4:10801733-10801752 | MS.gene010381:CDS | 40.0% | |
| CTCACGATATTCTTGACACA+AGG | - | chr5.4:10801704-10801723 | None:intergenic | 40.0% | |
| GACCATTCAACTAGAGGTTT+AGG | - | chr5.4:10800948-10800967 | None:intergenic | 40.0% | |
| ! | TGGTGTCCATGTATCACTTT+TGG | + | chr5.4:10801148-10801167 | MS.gene010381:CDS | 40.0% |
| !! | TTTCAGGTTGCATAACGTTC+TGG | + | chr5.4:10801128-10801147 | MS.gene010381:intron | 40.0% |
| !! | TTTTGTGGTTTTGCAGCATG+TGG | + | chr5.4:10801526-10801545 | MS.gene010381:intron | 40.0% |
| AGAGCAGCAATCACAAAGAC+CGG | - | chr5.4:10800973-10800992 | None:intergenic | 45.0% | |
| ATGTATCCACCACCAGAACA+AGG | + | chr5.4:10800807-10800826 | MS.gene010381:CDS | 45.0% | |
| CGCCTAAACCTCTAGTTGAA+TGG | + | chr5.4:10800943-10800962 | MS.gene010381:CDS | 45.0% | |
| GCGACAACAATACGGTTTGA+AGG | + | chr5.4:10801630-10801649 | MS.gene010381:CDS | 45.0% | |
| TATCGTGAGCTTGAAAACCG+TGG | + | chr5.4:10801715-10801734 | MS.gene010381:CDS | 45.0% | |
| ! | GGCATGGTAATGTTGAGCAA+CGG | + | chr5.4:10801880-10801899 | MS.gene010381:CDS | 45.0% |
| !! | AATGTTGAGCAACGGACTAG+AGG | + | chr5.4:10801888-10801907 | MS.gene010381:CDS | 45.0% |
| !! | ACGGACTAGAGGAATAGCAA+TGG | + | chr5.4:10801899-10801918 | MS.gene010381:CDS | 45.0% |
| !! | TATGCTGGCTTTCCTTGTTC+TGG | - | chr5.4:10800822-10800841 | None:intergenic | 45.0% |
| !!! | GCATTTTGGAATGGATAGGG+TGG | + | chr5.4:10801859-10801878 | MS.gene010381:intron | 45.0% |
| ACAGCTCCAGCAGTTGAACA+TGG | + | chr5.4:10801933-10801952 | MS.gene010381:CDS | 50.0% | |
| AGCACTACATCAGCGTACTC+CGG | + | chr5.4:10800888-10800907 | MS.gene010381:CDS | 50.0% | |
| CCTCTAGTTGAATGGTCCAC+CGG | + | chr5.4:10800951-10800970 | MS.gene010381:CDS | 50.0% | |
| CTCATGCCATGTTCAACTGC+TGG | - | chr5.4:10801942-10801961 | None:intergenic | 50.0% | |
| CTTGATTCATTGCTGCTGCG+AGG | + | chr5.4:10801672-10801691 | MS.gene010381:CDS | 50.0% | |
| GTAGCTCACTGGAATACCTG+TGG | - | chr5.4:10800865-10800884 | None:intergenic | 50.0% | |
| TCAACTAGAGGTTTAGGCGG+AGG | - | chr5.4:10800942-10800961 | None:intergenic | 50.0% | |
| TTGGAATGGATAGGGTGGCA+TGG | + | chr5.4:10801864-10801883 | MS.gene010381:intron | 50.0% | |
| ! | GCTGCTGGTTGATTGTATGC+TGG | - | chr5.4:10800837-10800856 | None:intergenic | 50.0% |
| ! | GTAGTGCTGTTGTAGCTCAC+TGG | - | chr5.4:10800876-10800895 | None:intergenic | 50.0% |
| ! | TTGCAGCATGTGGTGCTAGT+GGG | + | chr5.4:10801536-10801555 | MS.gene010381:intron | 50.0% |
| ! | TTTGCAGCATGTGGTGCTAG+TGG | + | chr5.4:10801535-10801554 | MS.gene010381:intron | 50.0% |
| ACTAGAGGTTTAGGCGGAGG+AGG | - | chr5.4:10800939-10800958 | None:intergenic | 55.0% | |
| CCGGTGGACCATTCAACTAG+AGG | - | chr5.4:10800954-10800973 | None:intergenic | 55.0% | |
| GCAGCAATCACAAAGACCGG+TGG | - | chr5.4:10800970-10800989 | None:intergenic | 55.0% | |
| GGCGTAATCTGATGAGGCAC+CGG | - | chr5.4:10800910-10800929 | None:intergenic | 55.0% | |
| GGCTTTCCTTGTTCTGGTGG+TGG | - | chr5.4:10800816-10800835 | None:intergenic | 55.0% | |
| ! | AGGAGGGGCGTAATCTGATG+AGG | - | chr5.4:10800916-10800935 | None:intergenic | 55.0% |
| ! | TGCAGCATGTGGTGCTAGTG+GGG | + | chr5.4:10801537-10801556 | MS.gene010381:intron | 55.0% |
| !! | GCTGGCTTTCCTTGTTCTGG+TGG | - | chr5.4:10800819-10800838 | None:intergenic | 55.0% |
| AGAGGTTTAGGCGGAGGAGG+AGG | - | chr5.4:10800936-10800955 | None:intergenic | 60.0% | |
| ATACCTGTGGCTGCTGCTGC+TGG | - | chr5.4:10800852-10800871 | None:intergenic | 60.0% | |
| GTTTAGGCGGAGGAGGAGGA+GGG | - | chr5.4:10800932-10800951 | None:intergenic | 60.0% | |
| TTTAGGCGGAGGAGGAGGAG+GGG | - | chr5.4:10800931-10800950 | None:intergenic | 60.0% | |
| CAACCAGCAGCAGCAGCCAC+AGG | + | chr5.4:10800846-10800865 | MS.gene010381:CDS | 65.0% | |
| GGTTTAGGCGGAGGAGGAGG+AGG | - | chr5.4:10800933-10800952 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 10800807 | 10801968 | 10800807 | ID=MS.gene010381 |
| chr5.4 | mRNA | 10800807 | 10801968 | 10800807 | ID=MS.gene010381.t1;Parent=MS.gene010381 |
| chr5.4 | exon | 10800807 | 10801014 | 10800807 | ID=MS.gene010381.t1.exon1;Parent=MS.gene010381.t1 |
| chr5.4 | CDS | 10800807 | 10801014 | 10800807 | ID=cds.MS.gene010381.t1;Parent=MS.gene010381.t1 |
| chr5.4 | exon | 10801134 | 10801205 | 10801134 | ID=MS.gene010381.t1.exon2;Parent=MS.gene010381.t1 |
| chr5.4 | CDS | 10801134 | 10801205 | 10801134 | ID=cds.MS.gene010381.t1;Parent=MS.gene010381.t1 |
| chr5.4 | exon | 10801542 | 10801754 | 10801542 | ID=MS.gene010381.t1.exon3;Parent=MS.gene010381.t1 |
| chr5.4 | CDS | 10801542 | 10801754 | 10801542 | ID=cds.MS.gene010381.t1;Parent=MS.gene010381.t1 |
| chr5.4 | exon | 10801877 | 10801968 | 10801877 | ID=MS.gene010381.t1.exon4;Parent=MS.gene010381.t1 |
| chr5.4 | CDS | 10801877 | 10801968 | 10801877 | ID=cds.MS.gene010381.t1;Parent=MS.gene010381.t1 |
| Gene Sequence |
| Protein sequence |
